genome.fa.s15198.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01015198.1 Kokia drynarioides strain JFW-HI SEQ_130242, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  201689

Tables:   1   

This is table  1  of  1  ( 67 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
866--894	2	14.5	2	100	0	58	48	0	0	51	1.00
4925--4953	14	2.0	15	93	6	51	58	0	0	41	0.98
11495--11596	23	4.4	23	83	2	116	9	24	22	43	1.83
18025--18073	20	2.4	21	77	19	59	38	2	4	55	1.31
24102--24166	25	2.6	25	80	7	69	66	1	1	30	1.10
30831--30870	21	2.0	21	85	14	57	52	0	0	47	1.00
30831--30868	19	1.9	19	89	5	58	52	0	0	47	1.00
30886--30932	24	1.9	25	91	4	78	34	19	17	29	1.94
42732--42903	59	2.9	60	80	3	168	46	11	18	23	1.82
46511--46551	2	21.0	2	95	5	75	51	0	0	48	1.00
53262--53315	26	2.1	26	100	0	108	44	18	0	37	1.50
54519--54570	20	2.6	20	81	9	70	51	1	1	44	1.23
55461--55623	22	7.1	23	79	6	118	13	25	22	39	1.90
55544--55622	23	3.3	24	82	8	108	12	30	18	37	1.89
55544--55648	48	2.2	48	87	3	149	13	31	19	36	1.90
63663--63800	69	2.0	69	85	0	186	23	13	19	44	1.85
63985--64031	24	2.0	24	83	4	60	36	6	6	51	1.53
75676--75712	6	6.2	6	87	12	58	32	13	18	35	1.90
78158--78352	104	1.9	104	95	0	354	26	22	16	34	1.95
81352--81410	29	2.0	30	83	3	75	47	13	8	30	1.73
85682--85909	123	1.9	119	83	3	294	37	14	20	27	1.92
89564--89621	29	2.0	29	100	0	116	37	34	0	27	1.57
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
89762--89797	18	2.0	18	94	0	63	69	19	0	11	1.18
91023--91098	40	1.9	39	100	0	143	25	5	6	61	1.41
91297--91345	11	4.5	10	78	16	53	34	4	0	61	1.15
91298--91345	12	4.3	11	78	21	55	33	4	0	62	1.14
91302--91354	23	2.2	24	87	9	74	39	7	0	52	1.30
95413--95533	23	5.3	22	85	4	107	11	21	25	41	1.87
96328--96370	11	4.1	11	82	11	54	51	0	2	46	1.13
96328--96392	20	3.4	19	75	12	62	49	0	1	49	1.10
97035--97077	7	6.3	7	79	15	54	44	0	55	0	0.99
97033--97077	13	3.4	13	90	3	72	46	0	53	0	1.00
97036--97091	26	2.2	26	83	6	69	46	1	51	0	1.11
97139--97172	18	2.0	18	88	11	54	38	0	0	61	0.96
97156--97221	11	6.4	11	70	19	52	45	1	0	53	1.09
97156--97215	20	2.9	21	80	12	70	48	1	0	50	1.11
97140--97212	29	2.6	27	83	12	92	43	1	0	54	1.08
100289--100363	36	2.1	36	100	0	150	42	0	2	54	1.14
101889--101913	1	25.0	1	100	0	50	100	0	0	0	0.00
102112--102138	13	2.1	13	100	0	54	25	7	22	44	1.79
113604--113640	19	1.9	19	88	0	56	43	13	16	27	1.85
114396--114420	7	3.6	7	100	0	50	12	0	0	88	0.53
119840--119971	59	2.2	59	84	1	165	35	16	13	34	1.88
120426--120489	31	2.1	31	82	11	78	46	9	6	37	1.61
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
129107--129166	31	1.9	31	86	0	84	40	20	3	36	1.69
131832--132028	105	1.9	105	89	1	304	27	16	20	35	1.94
135766--135824	31	1.9	30	83	10	75	40	5	3	50	1.41
136853--136898	14	3.3	14	79	14	51	23	2	0	73	0.94
136860--136898	14	2.9	13	82	17	53	23	0	0	76	0.78
143021--143055	16	2.2	16	94	0	61	42	5	11	40	1.65
145940--146005	31	2.1	30	81	10	71	36	10	18	34	1.85
150776--150823	20	2.3	21	86	13	64	39	0	0	60	0.97
150776--150829	20	2.6	20	82	5	63	38	0	0	61	0.96
150783--150836	28	2.0	27	82	10	65	42	0	1	55	1.10
151076--151108	16	2.0	17	88	5	50	30	3	0	66	1.06
154485--154533	24	2.0	24	84	0	62	53	30	0	16	1.43
160025--160084	31	1.9	31	89	0	93	45	13	20	21	1.85
166812--167121	158	2.0	158	85	7	425	44	22	11	22	1.84
166974--167349	187	2.0	190	87	3	546	43	24	10	21	1.83
173696--173776	32	2.7	29	80	17	85	39	7	0	53	1.29
173713--173778	32	2.1	32	91	5	107	43	6	0	50	1.27
174453--174483	10	3.1	10	90	0	53	12	6	0	80	0.89
175880--176403	264	2.0	264	91	1	863	35	12	18	33	1.89
180579--180604	3	8.7	3	100	0	52	34	0	0	65	0.93
197620--197646	13	2.1	13	100	0	54	44	0	0	55	0.99
198332--198370	17	2.3	17	86	8	53	38	0	7	53	1.30
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
200978--201010	15	2.2	15	100	0	66	45	12	6	36	1.66

Tables:   1

The End!