Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01000152.1 Kokia drynarioides strain JFW-HI SEQ_110814, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2354
ACGTcount: A:0.35, C:0.13, G:0.12, T:0.41


Found at i:975 original size:17 final size:20

Alignment explanation


    Indices: 934--977  Score: 58
    Period size: 17  Copynumber: 2.3  Consensus size: 20

        924 ATACCGAAAC

                                 
        934 TTAATATTTTAATCTATATAT
          1 TTAAT-TTTTAATCTATATAT

                                
        955 TTAATTTTTAA-C-ATA-AT
          1 TTAATTTTTAATCTATATAT

                  
        972 TTAATT
          1 TTAATT

        978 CATCTACTTT


Statistics
Matches: 23,  Mismatches: 0, Indels: 4
        0.85            0.00        0.15

Matches are distributed among these distances:
  17    8  0.35
  18    3  0.13
  19    1  0.04
  20    6  0.26
  21    5  0.22

ACGTcount: A:0.39, C:0.05, G:0.00, T:0.57


Consensus pattern (20 bp):   
TTAATTTTTAATCTATATAT
Done.