genome.fa.s15202.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01015202.1 Kokia drynarioides strain JFW-HI SEQ_130246, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  539317

Tables:   1   2   

This is table  1  of  2  ( 128 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6451--6479	13	2.3	13	94	5	51	86	0	0	13	0.58
11029--11112	33	2.5	33	82	0	114	36	20	25	17	1.94
21991--22032	13	3.1	13	83	16	50	42	0	4	52	1.22
26746--26773	4	7.0	4	100	0	56	50	0	0	50	1.00
35767--35808	6	7.0	6	94	0	66	11	50	21	16	1.77
46358--46430	29	2.4	30	77	9	76	28	4	17	49	1.65
46611--46669	31	2.0	29	83	6	73	49	16	3	30	1.63
65857--65896	6	6.7	6	100	0	80	17	35	30	17	1.93
87323--87382	24	2.5	24	83	0	75	50	10	11	28	1.71
93484--93517	17	1.9	18	88	5	52	20	14	11	52	1.73
94844--94998	60	2.6	60	95	0	274	22	21	18	38	1.94
95528--95830	60	5.0	60	78	9	287	38	15	17	28	1.90
95723--95859	61	2.3	60	80	2	150	41	16	14	27	1.87
102418--102448	3	10.0	3	93	6	53	35	0	0	64	0.94
130771--130815	14	3.4	14	71	22	51	37	8	6	46	1.61
130768--130824	26	2.2	26	100	0	114	40	7	7	45	1.58
132521--132641	54	2.2	54	97	1	224	50	8	19	21	1.74
142179--142232	22	2.5	22	78	6	56	72	11	12	3	1.25
142784--142837	26	2.1	25	89	3	81	50	5	5	38	1.49
143499--143703	65	3.2	65	86	7	292	30	18	10	40	1.84
153611--153665	24	2.3	24	83	0	65	25	12	12	49	1.76
154670--154704	17	2.1	17	100	0	70	54	28	17	0	1.43
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
155744--155775	2	16.5	2	93	6	57	50	0	0	50	1.00
158686--158710	2	12.5	2	100	0	50	52	0	48	0	1.00
160034--160065	2	16.0	2	100	0	64	50	0	0	50	1.00
160461--160488	7	4.0	7	100	0	56	14	71	14	0	1.15
165832--165872	18	2.3	18	86	0	55	48	2	0	48	1.14
165886--165928	10	4.2	10	82	5	50	72	4	0	23	1.04
170348--170385	2	19.0	2	100	0	76	0	50	0	50	1.00
173282--173315	2	17.0	2	93	0	59	52	0	0	47	1.00
176615--176649	15	2.4	15	90	4	54	85	2	0	11	0.69
183809--183856	26	1.9	24	84	16	62	31	20	0	47	1.50
184444--184485	20	2.1	20	100	0	84	23	21	14	40	1.90
193361--193409	19	2.6	19	96	0	89	46	0	20	32	1.51
194304--194337	13	2.6	13	100	0	68	41	41	5	11	1.66
195381--195442	28	2.2	28	88	0	88	29	9	27	33	1.88
195480--195585	29	3.7	29	77	14	87	33	3	28	34	1.75
195591--195637	21	2.2	21	92	7	78	31	0	29	38	1.58
195542--195695	79	1.9	80	83	6	197	31	1	31	35	1.69
195615--195850	59	4.0	59	88	1	332	30	4	31	33	1.77
195615--195850	30	8.0	30	80	8	270	30	4	31	33	1.77
197567--197629	17	3.7	16	87	8	81	53	3	0	42	1.16
197554--197602	24	2.1	23	88	3	71	48	2	0	48	1.12
197554--197629	34	2.2	33	81	6	89	52	2	0	44	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
197564--197629	6	11.3	6	72	23	52	53	3	0	43	1.16
204325--204632	29	10.5	28	75	13	230	33	3	27	34	1.75
204325--204543	59	3.7	59	76	13	163	33	4	29	32	1.78
204438--204632	59	3.4	56	82	12	225	32	3	27	36	1.73
212673--212833	75	2.1	75	97	0	304	48	10	0	40	1.38
217451--217517	19	3.5	19	75	4	62	38	20	8	31	1.84
220126--220158	8	4.1	8	100	0	66	36	12	51	0	1.39
222404--222435	2	16.0	2	93	0	55	46	0	3	50	1.17
223602--223713	60	1.9	58	85	7	154	40	16	14	28	1.88
225863--225896	15	2.2	16	89	5	52	5	70	2	20	1.21
239914--239964	19	2.7	19	82	14	61	74	0	5	19	1.02
239920--239966	24	2.0	24	87	8	69	72	0	6	21	1.07
239914--239964	9	5.4	9	82	15	59	74	0	5	19	1.02
247991--248346	177	2.0	176	96	0	658	44	13	15	25	1.84
254804--254954	50	3.0	50	96	0	266	35	13	21	29	1.92
267984--268026	18	2.4	17	81	11	50	46	0	6	46	1.30
272241--272275	18	1.9	18	88	0	52	28	0	5	65	1.15
273422--273468	11	3.9	12	80	8	51	59	2	2	36	1.21
284676--284727	27	2.0	27	92	3	88	34	7	3	53	1.48
286116--286432	29	10.8	29	77	9	286	33	3	28	34	1.75
286086--286401	59	5.4	59	85	4	361	33	3	28	34	1.74
286127--286435	88	3.5	87	81	7	347	32	3	29	35	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
286127--286401	58	4.7	60	87	6	357	31	3	29	36	1.74
286081--286432	59	6.0	59	84	5	338	33	3	28	34	1.75
287474--287530	15	3.6	16	74	11	55	43	5	1	49	1.35
288256--288299	17	2.6	16	79	10	52	54	6	0	38	1.27
288290--288337	17	2.8	17	83	0	60	50	2	4	43	1.33
289621--289682	21	2.8	24	71	28	66	62	0	6	30	1.20
289621--289680	19	2.8	22	73	21	56	63	0	6	30	1.20
296340--296372	16	2.1	16	88	5	50	54	12	6	27	1.60
302796--302826	7	4.4	7	100	0	62	61	0	0	38	0.96
319472--319510	14	2.8	13	84	7	51	43	0	7	48	1.31
319464--319510	16	3.3	15	77	19	55	42	0	8	48	1.33
321337--321405	35	2.0	35	86	8	97	28	20	15	34	1.94
324922--324967	23	2.1	22	84	8	58	41	2	10	45	1.51
331142--331200	31	1.9	31	82	0	73	49	5	8	37	1.55
339567--339601	2	17.5	2	93	0	61	48	0	2	48	1.16
340136--340169	1	34.0	1	87	0	50	94	0	5	0	0.32
344257--344287	4	7.8	4	100	0	62	51	22	0	25	1.48
346444--346478	18	2.0	17	88	5	52	40	11	5	42	1.65
362121--363318	596	2.0	596	97	0	2263	19	30	17	33	1.95
365028--365052	12	2.1	12	100	0	50	16	52	8	24	1.70
365024--365094	27	2.6	27	80	4	81	19	46	4	29	1.69
365041--365095	15	3.9	15	72	13	53	20	45	3	30	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
369247--369298	6	8.7	6	86	0	77	32	5	13	48	1.66
371552--371635	42	2.0	42	100	0	168	19	16	16	47	1.83
376477--376767	29	9.9	29	70	13	195	31	31	4	31	1.79
376482--376776	30	10.0	29	70	12	183	31	31	5	31	1.79
376482--376756	59	4.7	60	85	4	364	32	30	4	32	1.78
376482--376796	119	2.7	116	82	5	291	32	30	5	32	1.79
380373--380435	29	2.1	29	82	8	72	50	7	0	41	1.31
382038--382129	29	3.2	28	84	6	103	32	1	30	35	1.65
386860--386912	16	3.2	17	78	7	65	64	0	0	35	0.94
386852--386931	29	2.8	27	74	12	70	63	0	0	36	0.94
386857--386908	26	2.0	26	85	7	70	65	0	0	34	0.93
386852--386914	15	4.2	15	71	18	51	66	0	0	33	0.92
388117--388287	91	1.9	89	83	4	218	15	15	7	61	1.54
388993--389049	29	2.0	28	82	3	69	26	5	8	59	1.48
392214--392244	4	7.8	4	100	0	62	0	0	22	77	0.77
393423--393464	21	2.0	22	90	4	68	52	2	0	45	1.13
397798--397863	29	2.3	28	84	5	78	24	12	16	46	1.81
408073--408099	2	13.5	2	100	0	54	51	0	0	48	1.00
416522--416546	8	3.1	8	100	0	50	48	0	0	52	1.00
418089--418178	42	2.2	41	86	7	137	51	8	1	38	1.41
418160--418192	15	2.2	15	100	0	66	60	12	0	27	1.32
432218--432263	11	4.3	11	81	13	51	76	0	21	2	0.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
432230--432266	13	2.7	13	91	8	56	81	0	18	0	0.70
433143--433404	61	4.4	58	76	10	237	32	20	20	25	1.97
442545--442717	49	3.5	49	77	3	177	31	13	26	29	1.94
442545--442740	98	2.0	98	80	2	223	30	13	27	28	1.94
443403--443439	18	2.1	18	94	0	65	16	5	35	43	1.71
444002--444044	21	2.1	20	83	12	52	76	2	9	11	1.10
456960--457011	22	2.4	22	90	3	79	50	0	26	23	1.50
461137--461175	3	13.0	3	100	0	78	66	0	33	0	0.92
466069--466110	17	2.6	16	77	7	50	73	7	14	4	1.21
481766--481799	18	1.9	18	88	5	52	29	0	5	64	1.17

Tables:   1   2