genome.fa.s15204.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01015204.1 Kokia drynarioides strain JFW-HI SEQ_130248, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  184191

Tables:   1   

This is table  1  of  1  ( 58 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2374--2406	17	1.9	17	93	0	57	51	3	3	42	1.32
8270--8320	21	2.4	21	83	6	68	47	29	0	23	1.52
12705--12742	14	2.7	14	91	0	58	44	28	5	21	1.73
14171--14212	18	2.3	19	80	19	54	64	2	2	30	1.19
20175--20303	65	2.0	65	96	0	240	28	13	14	43	1.83
25478--25522	3	15.0	3	90	0	72	28	33	4	33	1.77
25478--25519	15	2.8	15	100	0	84	28	33	4	33	1.78
38116--38193	18	4.1	19	80	14	81	39	1	5	53	1.31
38086--38194	19	5.3	20	74	20	84	39	0	3	55	1.24
38779--38817	19	2.1	19	90	0	60	38	0	0	61	0.96
42415--42857	220	2.0	219	90	1	690	34	18	29	16	1.94
47538--47662	30	4.3	28	81	11	128	32	2	26	38	1.69
47554--47664	30	3.8	29	85	8	161	34	1	27	36	1.67
47493--47664	59	2.9	59	86	2	231	33	4	26	35	1.77
48718--48787	30	2.3	30	76	16	72	40	2	2	54	1.30
48774--48823	24	2.1	23	85	10	66	40	4	4	52	1.39
51802--52158	80	4.5	79	91	3	554	33	22	17	26	1.96
51802--52163	159	2.3	160	92	2	595	33	22	17	26	1.96
52889--53020	63	2.1	62	80	9	153	48	0	3	47	1.19
54218--54305	45	2.0	44	91	6	144	37	11	13	37	1.81
58686--58771	31	2.8	31	80	5	104	47	10	9	32	1.70
61195--61233	20	2.0	20	89	0	60	33	2	2	61	1.23
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63327--63366	21	1.9	21	85	10	55	27	0	17	55	1.43
65455--65497	19	2.3	19	95	0	77	34	25	6	32	1.83
76620--76742	62	2.0	62	88	0	183	24	6	26	42	1.79
82413--82456	8	5.5	8	86	10	54	70	0	0	29	0.88
82415--82456	21	2.0	21	86	9	59	71	0	0	28	0.86
87110--87254	70	2.0	71	85	6	195	29	13	15	41	1.85
88880--88912	14	2.4	14	85	15	50	0	18	18	63	1.31
89474--89625	76	2.0	78	88	2	227	36	9	17	36	1.82
96080--96127	24	2.0	25	87	4	71	56	4	4	35	1.38
96904--96997	51	1.9	47	80	8	107	35	4	1	59	1.24
98696--98723	2	14.0	2	100	0	56	50	0	0	50	1.00
99721--99746	2	13.0	2	100	0	52	50	50	0	0	1.00
103024--103066	20	2.2	20	87	4	61	60	13	0	25	1.34
103614--103647	18	1.9	18	88	5	52	29	0	5	64	1.17
106013--106056	23	1.9	23	86	9	63	68	6	0	25	1.14
110138--110418	138	2.0	138	94	0	490	37	12	20	29	1.89
115113--115144	16	1.9	17	93	6	57	68	3	0	28	1.04
119882--119913	15	2.1	16	94	5	57	53	0	6	40	1.26
120307--120342	13	2.8	13	86	0	54	77	5	5	11	1.10
125527--125556	14	2.1	14	100	0	60	30	6	36	26	1.82
127365--127441	31	2.6	29	73	17	75	42	5	2	49	1.39
134910--134951	14	3.0	14	82	0	57	47	9	0	42	1.36
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
135770--135817	22	2.1	23	85	11	64	52	0	4	43	1.20
142140--142197	18	3.2	18	66	9	55	18	20	37	22	1.94
142132--142203	36	2.0	36	100	0	144	19	19	38	22	1.93
142591--142619	13	2.1	14	93	6	51	51	0	0	48	1.00
142604--142657	28	1.9	28	85	7	74	59	0	0	40	0.98
148536--148584	24	2.0	24	96	0	89	24	16	18	40	1.90
150692--150720	13	2.2	13	100	0	58	41	0	17	41	1.49
151416--151662	95	2.6	95	85	1	316	29	12	17	40	1.85
164775--164832	29	2.0	29	86	0	80	36	10	18	34	1.85
167626--167669	18	2.5	17	79	13	54	36	0	0	63	0.95
167669--167740	38	1.9	38	83	8	94	48	0	4	47	1.21
167647--167747	37	2.7	36	73	11	89	45	0	2	51	1.16
179646--179681	18	1.9	19	88	5	56	44	8	5	41	1.58
184003--184045	12	3.6	12	80	0	50	16	62	2	18	1.43

Tables:   1

The End!