Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01015207.1 Kokia drynarioides strain JFW-HI SEQ_130251, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5754
ACGTcount: A:0.33, C:0.14, G:0.13, T:0.36

Warning! 250 characters in sequence are not A, C, G, or T


Found at i:683 original size:20 final size:20

Alignment explanation


    Indices: 641--684  Score: 54
    Period size: 20  Copynumber: 2.2  Consensus size: 20

        631 ATTTATATCT

                          *  *  
        641 ATTTATATTTTTCATTTTAA
          1 ATTTATATTTTTCAATTAAA

                                 
        661 ATTTAT-TTTTTCAATTAAGA
          1 ATTTATATTTTTCAATTAA-A

                
        681 ATTT
          1 ATTT

        685 CATAACACTA


Statistics
Matches: 21,  Mismatches: 2, Indels: 2
        0.84            0.08        0.08

Matches are distributed among these distances:
  19   10  0.48
  20   11  0.52

ACGTcount: A:0.32, C:0.05, G:0.02, T:0.61


Consensus pattern (20 bp):   
ATTTATATTTTTCAATTAAA

Found at i:3311 original size:26 final size:26

Alignment explanation


    Indices: 3282--3338  Score: 105
    Period size: 26  Copynumber: 2.2  Consensus size: 26

       3272 TGAATTGGGA

                                      
       3282 TTTTCTTTTTATCATTTCTATAAACT
          1 TTTTCTTTTTATCATTTCTATAAACT

                                      
       3308 TTTTCTTTTTATCATTTCTATAAACT
          1 TTTTCTTTTTATCATTTCTATAAACT

            *    
       3334 GTTTC
          1 TTTTC

       3339 AAACAAGAAG


Statistics
Matches: 30,  Mismatches: 1, Indels: 0
        0.97            0.03        0.00

Matches are distributed among these distances:
  26   30  1.00

ACGTcount: A:0.21, C:0.16, G:0.02, T:0.61


Consensus pattern (26 bp):   
TTTTCTTTTTATCATTTCTATAAACT

Found at i:5275 original size:6 final size:6

Alignment explanation


    Indices: 5264--5290  Score: 54
    Period size: 6  Copynumber: 4.5  Consensus size: 6

       5254 GACACTGCCA

                                           
       5264 TCTGCT TCTGCT TCTGCT TCTGCT TCT
          1 TCTGCT TCTGCT TCTGCT TCTGCT TCT

       5291 TTTACCAAGT


Statistics
Matches: 21,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   6   21  1.00

ACGTcount: A:0.00, C:0.33, G:0.15, T:0.52


Consensus pattern (6 bp):   
TCTGCT

Done.