genome.fa.s15212.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01015212.1 Kokia drynarioides strain JFW-HI SEQ_130256, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  177470

Tables:   1   

This is table  1  of  1  ( 57 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
519--717	30	6.8	29	82	12	212	36	29	3	30	1.74
519--717	58	3.4	56	83	10	199	36	29	3	30	1.74
791--862	28	2.6	28	100	0	144	38	30	2	27	1.71
6284--6330	23	2.0	24	83	8	60	74	4	8	12	1.19
6320--6392	18	4.3	17	75	16	62	76	4	17	1	1.01
6319--6391	31	2.4	29	80	10	83	78	4	16	1	0.98
6313--6392	34	2.4	36	74	18	82	76	3	17	2	1.05
7593--7928	50	6.7	49	72	13	227	39	20	25	14	1.90
7602--7791	101	1.9	101	91	0	308	38	22	24	14	1.91
7585--7818	101	2.3	99	81	5	299	39	20	25	14	1.91
7644--7926	150	1.9	150	90	1	451	40	20	25	14	1.90
8597--9290	205	3.4	205	89	2	991	36	18	22	21	1.95
9626--9721	17	5.6	17	74	7	77	37	4	6	52	1.46
11582--11802	29	7.8	29	75	13	192	35	26	2	35	1.69
11591--11802	59	3.8	58	76	16	230	34	26	2	35	1.70
11677--11729	21	2.6	21	88	5	74	32	30	1	35	1.69
11659--11756	48	2.0	49	92	4	162	31	30	3	34	1.73
11611--11775	78	2.1	80	84	7	221	35	27	2	35	1.70
13867--14022	36	4.3	36	92	0	240	34	21	12	31	1.90
16547--16585	20	2.0	20	85	10	53	46	23	5	25	1.73
16693--16746	20	2.7	20	88	0	81	50	11	7	31	1.66
18503--18563	11	5.5	11	72	14	54	47	1	0	50	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18503--18563	5	10.0	6	74	22	56	47	1	0	50	1.10
18502--18563	18	3.8	17	76	15	60	46	1	0	51	1.10
19158--19208	19	2.6	20	84	9	61	68	1	0	29	1.00
19492--19894	200	2.0	198	86	4	560	46	11	7	33	1.70
22034--22158	25	4.9	25	74	6	99	34	23	16	25	1.95
29454--31781	388	6.0	388	90	1	3329	31	22	17	29	1.96
29454--31781	775	3.0	774	89	1	3401	31	22	17	29	1.96
37259--37353	31	3.1	31	100	0	190	52	6	9	31	1.59
43267--43325	29	2.0	29	96	0	109	37	18	6	37	1.78
43274--43339	29	2.3	29	83	0	78	37	21	6	34	1.78
52777--52835	27	2.2	27	81	0	64	37	11	23	27	1.90
62852--62887	15	2.3	16	90	4	56	30	2	0	66	1.06
63015--63060	24	2.0	22	83	8	56	52	0	4	43	1.21
64489--64972	43	11.4	43	79	3	428	33	27	15	23	1.95
64489--64972	84	5.7	86	79	4	448	33	27	15	23	1.95
64503--64977	127	3.8	127	79	3	456	32	27	15	24	1.95
66566--66591	2	13.0	2	100	0	52	50	0	0	50	1.00
72377--72416	21	1.9	21	84	0	53	30	15	12	42	1.83
90011--90050	17	2.4	17	91	4	64	82	5	2	10	0.91
92728--92753	7	3.7	7	100	0	52	53	0	0	46	1.00
96386--96422	19	1.9	19	89	10	58	59	13	0	27	1.35
101585--101617	15	2.2	15	94	0	57	9	6	57	27	1.53
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
102452--102502	21	2.4	22	83	9	61	68	5	3	21	1.27
102507--102531	12	2.1	12	100	0	50	68	16	0	16	1.22
102560--102702	23	6.4	22	73	8	101	67	18	4	9	1.37
102526--102702	23	7.9	22	72	9	99	67	16	5	10	1.38
102526--102702	22	7.9	22	72	10	83	67	16	5	10	1.38
105194--105249	22	2.5	22	82	5	67	12	21	23	42	1.86
105244--105322	25	3.2	25	87	1	106	12	27	16	43	1.84
115983--116025	18	2.3	18	84	8	50	48	6	9	34	1.62
123877--123924	18	2.7	18	75	12	53	2	35	12	50	1.52
123911--123989	9	8.8	9	72	13	56	1	31	3	63	1.20
126652--126684	12	2.8	12	90	0	57	0	15	12	72	1.12
156138--156250	57	2.0	57	98	0	217	30	14	13	41	1.84
176891--176980	45	2.0	45	97	0	171	41	16	17	24	1.90

Tables:   1

The End!