genome.fa.s15213.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01015213.1 Kokia drynarioides strain JFW-HI SEQ_130257, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  191884

Tables:   1   

This is table  1  of  1  ( 76 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
135--230	6	16.5	6	70	18	69	50	3	2	44	1.29
136--229	11	8.2	11	70	23	52	51	3	2	43	1.29
164--262	34	2.9	35	82	7	121	53	5	1	40	1.30
135--262	17	7.4	16	73	18	96	50	4	1	42	1.32
6375--6422	11	4.4	11	79	7	53	68	4	6	20	1.28
6382--6422	21	1.9	22	85	5	57	70	4	7	17	1.28
6412--6451	20	2.1	19	85	4	53	70	12	0	17	1.18
6418--6531	53	2.1	54	80	6	126	67	16	3	12	1.35
6436--6552	24	4.7	24	72	12	83	68	17	4	9	1.33
11100--11140	6	6.8	6	94	0	64	56	29	14	0	1.39
23631--23715	38	2.4	35	84	11	104	34	17	14	34	1.90
26089--26163	32	2.3	32	81	6	89	44	0	0	56	0.99
33356--33658	151	2.0	151	100	0	606	45	17	11	26	1.81
38493--38534	22	2.0	22	85	4	59	80	2	0	16	0.81
45199--45243	19	2.3	19	80	7	54	40	0	6	53	1.27
45408--45457	25	2.0	25	88	7	75	46	0	6	48	1.27
46639--46692	24	2.2	25	80	9	67	38	1	5	53	1.35
65261--65315	24	2.3	23	82	17	60	56	9	25	9	1.60
68921--68999	27	2.9	27	96	3	142	15	25	18	40	1.90
70897--70929	17	1.9	17	93	0	57	51	3	6	39	1.42
79647--79682	18	2.0	18	100	0	72	50	16	11	22	1.77
81285--81372	11	8.1	11	70	12	56	15	3	11	69	1.31
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
81282--81367	14	6.2	14	73	16	65	16	3	10	69	1.30
81307--81369	33	1.9	33	86	0	90	15	4	11	68	1.36
81394--81424	12	2.7	11	90	9	53	29	0	0	70	0.87
85195--85259	29	2.4	27	76	7	69	41	12	6	40	1.67
86614--86654	17	2.2	18	87	12	57	26	0	2	70	0.99
94511--94840	171	1.9	172	91	0	536	19	17	10	52	1.73
101666--101709	16	2.8	16	79	3	54	47	0	2	50	1.13
103432--103495	27	2.4	27	82	17	80	37	0	1	60	1.06
103837--103888	24	2.2	24	82	3	61	48	5	3	42	1.45
105549--105586	2	19.0	2	84	10	51	50	2	2	44	1.30
107906--107947	20	2.0	21	86	13	61	50	0	11	38	1.40
111946--112058	51	2.2	52	81	7	133	45	2	12	39	1.56
117207--117277	23	3.1	23	70	11	65	26	33	14	25	1.94
119075--119152	24	2.9	27	76	21	76	65	2	0	32	1.06
119095--119133	16	2.5	15	84	8	51	66	0	0	33	0.92
119076--119139	24	2.6	26	80	16	82	64	1	0	34	1.03
119076--119140	26	2.5	27	83	14	84	64	1	0	33	1.03
120625--120986	183	2.0	182	85	1	492	21	20	26	30	1.98
120843--120996	81	1.9	81	83	0	200	23	18	25	32	1.97
125404--125620	75	2.9	75	99	0	425	21	16	14	47	1.82
127406--127464	31	1.9	31	82	6	75	45	8	3	42	1.51
132275--132434	84	1.9	84	83	5	207	13	25	21	38	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
134388--134416	8	3.8	8	90	9	51	93	6	0	0	0.36
134387--134416	15	2.0	15	100	0	60	93	6	0	0	0.35
135744--135777	9	3.8	9	88	0	50	44	8	11	35	1.72
136055--136080	3	8.7	3	100	0	52	30	0	0	69	0.89
144072--144271	109	1.8	109	81	6	253	39	15	14	31	1.87
145479--145520	18	2.3	18	100	0	84	21	26	23	28	1.99
148642--148671	9	3.4	9	90	9	53	90	0	0	10	0.47
148642--148671	8	3.6	8	95	4	51	90	0	0	10	0.47
151607--151636	15	2.0	15	93	0	51	23	0	6	70	1.11
157919--157956	20	1.9	20	94	0	67	26	0	5	68	1.11
158901--158934	17	2.1	16	88	5	50	73	0	0	26	0.83
160626--160706	6	14.0	6	78	12	89	44	1	2	51	1.22
160619--160706	17	5.1	17	87	1	122	44	1	2	52	1.21
160626--160693	23	3.2	22	74	23	74	44	0	1	54	1.09
160616--160693	11	6.9	11	78	8	77	42	0	1	56	1.07
162443--162707	30	8.9	29	82	8	243	35	28	3	31	1.75
162443--162707	60	4.5	59	80	8	279	35	28	3	31	1.75
166316--166352	17	2.2	17	90	0	56	18	27	0	54	1.44
166763--166808	21	2.2	21	88	11	69	58	13	0	28	1.35
169834--169861	13	2.2	13	100	0	56	50	14	0	35	1.43
172332--172375	18	2.4	19	76	7	54	4	36	2	56	1.32
178813--178987	97	1.8	96	87	3	262	39	13	17	29	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
179482--179535	6	9.3	6	80	8	58	53	5	0	40	1.24
179482--179554	11	6.2	12	71	7	51	54	5	2	36	1.38
179480--179566	17	5.0	17	80	5	93	52	6	2	37	1.41
179669--179984	59	5.4	58	79	8	241	36	14	15	33	1.88
179682--179984	119	2.6	116	83	6	378	34	15	16	33	1.90
179682--180025	60	5.8	58	81	8	349	34	16	17	31	1.92
179682--180022	119	2.9	117	78	4	366	34	16	17	31	1.92
181290--181337	22	2.2	22	100	0	96	45	25	29	0	1.53
183999--184043	22	2.1	22	83	4	56	42	2	13	42	1.56
186933--187008	23	3.2	23	76	10	64	10	23	22	43	1.84

Tables:   1

The End!