genome.fa.s15214.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01015214.1 Kokia drynarioides strain JFW-HI SEQ_130258, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  162075

Tables:   1   

This is table  1  of  1  ( 66 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
543--593	22	2.3	22	86	3	66	13	1	5	78	1.02
590--635	23	2.0	23	86	4	65	10	17	17	54	1.70
6265--6302	19	2.0	20	89	5	60	47	0	0	52	1.00
7573--7640	31	2.2	31	94	5	120	41	11	5	41	1.66
9803--9902	53	1.9	52	81	6	121	43	7	15	35	1.73
10415--10492	24	3.3	23	70	24	63	42	0	2	55	1.13
10443--10483	16	2.6	16	75	24	50	36	0	0	63	0.95
12615--12682	34	2.0	34	100	0	136	29	26	14	29	1.95
13886--14433	30	18.8	29	78	5	550	28	3	31	36	1.74
13886--14437	59	9.4	59	90	3	744	28	3	31	36	1.74
15092--15133	4	10.2	4	84	5	57	0	21	0	78	0.75
15095--15141	21	2.2	21	88	3	67	2	21	0	76	0.89
15092--15133	12	3.4	12	90	6	66	0	21	0	78	0.75
16703--16744	12	3.4	12	83	6	57	40	0	59	0	0.97
16826--16862	16	2.2	18	90	9	60	56	0	0	43	0.99
16829--16862	17	1.9	18	88	5	52	61	0	0	38	0.96
19317--19454	65	2.2	62	83	7	161	43	9	13	34	1.76
20440--20514	9	8.0	9	73	12	53	36	6	1	56	1.34
20440--20508	19	3.6	19	73	13	61	37	7	1	53	1.38
21294--21328	12	2.9	12	86	0	52	51	20	5	22	1.68
21833--21895	21	3.2	21	63	28	57	47	15	6	30	1.71
24772--24978	103	2.0	103	83	5	263	41	16	13	28	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33091--33247	59	2.7	57	78	8	140	26	19	14	39	1.90
37575--37823	130	1.9	129	91	2	410	55	14	15	14	1.71
37577--37869	130	2.3	129	86	4	376	54	14	14	16	1.71
40212--40240	12	2.3	13	94	5	51	6	34	0	58	1.25
59481--59540	30	2.1	27	81	9	66	41	18	6	33	1.76
60897--60973	38	2.0	38	97	0	145	23	25	16	33	1.96
66073--66111	6	6.5	6	93	0	60	48	0	28	23	1.51
68411--68444	14	2.5	13	86	13	50	73	0	2	23	0.97
68852--68949	31	3.1	31	92	1	160	38	6	16	38	1.73
68852--68978	62	2.1	60	81	10	141	36	7	16	40	1.76
72095--72147	26	2.0	26	96	0	97	45	7	5	41	1.56
74714--74792	40	2.0	40	97	0	149	41	11	11	35	1.77
75038--75082	24	2.0	23	83	12	58	37	2	8	51	1.46
90171--92097	266	7.3	260	76	9	1315	37	24	12	24	1.91
90173--91592	524	2.7	521	84	6	1649	38	25	12	23	1.90
90131--92097	264	7.4	270	75	12	936	37	24	12	24	1.91
91441--92097	272	2.4	269	83	5	831	37	23	14	24	1.92
93572--93661	9	9.4	9	68	23	51	64	4	3	27	1.29
94154--94246	10	9.3	10	73	16	52	27	1	3	67	1.12
94201--94243	12	3.6	12	87	6	61	25	2	0	72	0.97
97301--97336	18	2.0	18	88	0	54	55	2	5	36	1.38
97691--97751	13	4.7	13	80	11	54	42	14	1	40	1.56
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
97704--97751	13	3.7	13	86	13	64	39	16	2	41	1.60
97690--97756	26	2.6	27	80	7	84	43	14	1	40	1.55
98007--98071	20	3.3	20	66	33	59	55	10	3	30	1.50
97995--98075	39	2.1	39	100	0	162	53	13	2	30	1.53
104198--104889	256	2.7	253	85	5	838	46	13	14	26	1.81
104663--104930	139	1.9	137	86	2	376	49	14	11	24	1.76
110515--110687	59	2.9	58	83	5	204	31	15	4	48	1.65
110527--110612	27	2.9	30	73	21	90	29	17	4	48	1.67
110768--110808	15	2.6	16	85	11	50	56	4	4	34	1.42
123529--123587	14	4.7	12	74	22	50	69	1	25	3	1.13
128829--128962	67	2.0	66	86	1	187	46	7	13	32	1.71
129653--129869	60	3.7	58	80	5	195	25	19	14	40	1.89
131189--131219	16	1.9	16	100	0	62	35	32	6	25	1.82
131429--131483	21	2.4	23	85	8	69	61	3	5	29	1.35
131438--131481	22	2.0	23	86	4	63	63	4	4	27	1.33
133863--133903	21	1.9	22	85	14	59	56	4	2	36	1.34
134540--134583	20	2.1	21	84	12	56	38	0	4	56	1.20
145118--145183	23	2.9	21	75	20	62	42	3	0	54	1.15
146376--146402	2	13.5	2	100	0	54	51	0	0	48	1.00
149674--149761	30	2.9	30	87	0	122	3	25	23	47	1.67
150537--150783	85	2.9	85	92	1	408	31	13	12	41	1.82
161573--161691	60	2.0	60	86	6	170	42	7	9	40	1.65

Tables:   1

The End!