genome.fa.s15215.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01015215.1 Kokia drynarioides strain JFW-HI SEQ_130259, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  135527

Tables:   1   

This is table  1  of  1  ( 45 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45--96	15	3.2	15	73	19	50	53	0	0	46	1.00
47--104	19	3.3	19	72	18	61	48	0	1	50	1.11
728--775	20	2.3	20	78	3	51	68	6	10	14	1.37
1290--1353	32	2.0	31	82	8	76	43	0	10	45	1.39
4258--4308	21	2.4	21	86	0	75	54	13	3	27	1.56
5027--5062	18	2.0	18	88	0	54	47	19	8	25	1.77
6865--6916	22	2.3	22	90	3	77	23	25	15	36	1.93
13559--13625	32	2.2	31	94	5	118	37	5	5	50	1.51
20670--20719	20	2.4	21	81	15	52	42	10	0	48	1.37
32425--32538	31	3.8	31	68	20	89	25	20	11	42	1.85
32483--32557	29	2.5	31	80	4	91	28	16	12	44	1.83
33330--33370	22	1.9	22	90	5	66	21	7	26	43	1.79
34172--34245	31	2.4	31	84	6	87	50	2	8	39	1.46
34873--35018	42	3.5	42	75	7	134	28	21	24	24	1.99
34896--35026	42	3.1	42	76	4	138	29	21	22	27	1.99
38357--38399	18	2.4	18	88	7	61	53	0	0	46	1.00
42819--42878	30	2.0	30	83	6	77	43	3	1	51	1.28
46280--46310	8	3.9	8	100	0	62	48	0	0	51	1.00
48610--48724	41	2.8	41	84	3	126	39	17	20	22	1.93
48742--48780	20	1.9	20	84	5	51	35	15	33	15	1.89
51254--51297	17	2.4	18	81	11	54	50	0	6	43	1.29
53537--53576	21	1.9	21	90	10	64	70	5	0	25	1.08
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55512--55595	43	2.0	43	87	0	123	26	14	26	33	1.94
63269--63310	12	3.3	13	84	12	52	16	7	0	76	1.00
70789--70828	13	3.1	13	81	0	53	30	7	27	35	1.84
71083--71130	20	2.3	21	82	10	55	47	2	0	50	1.12
71154--71201	24	2.0	25	91	4	80	39	0	4	56	1.19
75345--75682	162	2.1	162	86	4	468	28	18	16	36	1.92
81276--81342	33	2.1	31	83	5	80	28	2	1	67	1.14
83380--83495	61	1.9	60	82	1	142	50	10	13	25	1.73
94363--94388	2	13.0	2	100	0	52	50	0	0	50	1.00
118394--118439	20	2.3	20	100	0	92	45	10	13	30	1.77
118820--118862	13	3.3	12	81	12	50	37	18	2	41	1.63
118820--118868	26	1.9	26	84	12	66	40	18	2	38	1.62
123120--123611	59	8.3	59	84	2	540	33	3	29	34	1.74
123120--123601	29	16.3	29	75	4	374	33	3	29	34	1.73
124595--124683	3	29.0	3	72	4	61	37	3	3	56	1.33
129148--129200	21	2.5	21	90	0	88	32	15	33	18	1.92
129151--129197	18	2.6	18	89	0	76	31	17	34	17	1.92
129820--129851	15	2.1	16	88	11	50	50	0	0	50	1.00
131201--131246	20	2.3	20	88	7	67	67	4	4	23	1.27
134267--134461	96	2.0	96	94	0	345	32	16	15	34	1.91
134660--134707	17	2.9	17	93	3	80	31	0	6	62	1.20
134658--134731	17	4.4	16	83	6	67	40	0	4	55	1.19
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
134812--134850	17	2.2	18	90	4	62	56	30	0	12	1.37

Tables:   1

The End!