genome.fa.s15217.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01015217.1 Kokia drynarioides strain JFW-HI SEQ_130261, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  264354

Tables:   1   

This is table  1  of  1  ( 82 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1729--1782	28	1.9	28	88	0	81	24	35	11	29	1.90
16540--16588	25	2.0	24	84	4	62	46	2	0	51	1.12
28047--28200	51	3.0	51	100	0	308	42	13	11	31	1.80
30756--30806	23	2.2	23	89	0	75	41	3	3	50	1.39
31087--31125	16	2.4	16	84	12	53	35	0	0	64	0.94
31088--31124	17	2.2	16	90	4	56	32	0	0	67	0.91
31206--31297	39	2.2	41	79	11	116	58	7	0	33	1.26
32573--32616	22	2.0	24	82	13	58	65	4	2	27	1.23
34091--34157	31	2.2	31	78	13	75	34	14	13	37	1.86
40695--40765	30	2.4	30	83	4	90	40	11	19	28	1.86
40725--40809	28	3.0	28	70	16	66	45	7	20	27	1.76
40640--40830	89	2.1	89	81	5	217	43	13	17	25	1.85
40956--40994	18	2.3	16	82	8	51	64	0	2	33	1.08
46318--46366	20	2.5	21	71	21	52	32	2	6	59	1.34
46852--46901	19	2.6	19	78	15	57	52	4	4	40	1.39
46901--46925	5	5.0	5	100	0	50	60	0	0	40	0.97
47504--47536	2	17.0	2	93	6	59	51	0	0	48	1.00
60891--60927	17	2.2	17	95	4	67	59	0	8	32	1.27
70251--70523	105	2.6	103	80	6	291	41	19	14	24	1.89
70199--70565	104	3.5	102	77	8	330	40	20	14	25	1.89
80100--80126	13	2.1	13	100	0	54	33	44	7	14	1.73
81856--81994	69	2.0	69	98	0	269	29	5	20	44	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
81883--81990	34	3.1	34	64	12	94	28	5	18	47	1.71
84273--84320	2	24.0	2	100	0	96	50	0	0	50	1.00
84496--84543	15	3.1	17	77	19	52	47	8	2	41	1.45
84475--84576	29	3.5	29	69	20	79	49	4	2	43	1.39
87554--87582	15	1.9	15	100	0	58	34	6	6	51	1.55
87556--87588	14	2.3	15	89	5	50	45	6	6	42	1.53
87556--87589	15	2.3	15	89	0	50	47	5	5	41	1.52
88391--88549	58	2.7	59	80	7	164	37	5	27	30	1.78
88417--88558	59	2.5	59	83	5	175	35	5	26	32	1.80
88450--88882	59	7.3	59	79	9	254	32	5	29	33	1.79
88512--88890	30	12.7	30	77	6	342	32	5	28	33	1.79
88521--88890	89	4.2	89	83	6	405	32	5	28	33	1.79
90795--90830	2	18.0	2	100	0	72	50	0	0	50	1.00
93509--93579	33	2.2	32	78	12	83	42	2	0	54	1.14
98140--98187	15	3.0	15	78	21	53	72	0	0	27	0.84
98146--98185	18	2.2	18	86	8	55	77	0	0	22	0.77
98139--98193	27	2.0	26	83	13	67	72	0	0	27	0.85
98161--98193	15	2.1	15	94	5	57	72	0	0	27	0.85
99948--100106	54	3.0	54	79	7	189	37	14	23	25	1.92
100540--100724	54	3.4	54	78	3	140	35	14	22	28	1.92
101140--101338	54	3.7	54	75	4	186	38	18	19	24	1.93
101140--101338	108	1.8	108	80	4	240	38	18	19	24	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
100016--101797	614	2.9	616	82	5	2175	34	18	15	31	1.92
119508--119713	102	2.0	103	94	0	360	38	23	17	19	1.93
124047--124113	31	2.2	30	89	10	100	25	20	8	44	1.80
123999--124188	88	2.1	89	84	2	240	25	17	10	46	1.80
124062--124134	31	2.4	31	83	0	92	28	19	8	43	1.79
124355--124528	60	2.9	59	77	7	138	48	9	16	25	1.76
124415--124528	61	1.9	61	83	7	153	50	7	15	26	1.69
144781--144830	21	2.2	25	82	13	63	42	0	12	46	1.41
159527--159577	23	2.2	23	82	6	59	35	9	5	49	1.60
160448--160499	20	2.6	19	79	11	50	34	5	3	55	1.42
167384--167432	17	2.8	17	82	17	64	65	2	0	32	1.04
167915--167958	21	2.1	21	83	8	54	38	4	4	52	1.42
175012--175041	2	15.0	2	100	0	60	0	50	0	50	1.00
183650--183765	61	1.9	61	86	6	166	25	14	8	50	1.71
183998--184072	30	2.5	30	93	2	123	57	6	9	26	1.55
183998--184087	30	3.0	30	86	4	83	55	8	8	26	1.60
187561--187602	18	2.3	18	95	0	75	11	4	11	71	1.29
187550--187616	20	3.4	20	81	10	84	10	2	17	68	1.31
187559--187630	20	3.7	20	81	10	60	11	4	15	69	1.32
187618--187708	12	7.8	12	77	4	89	7	4	16	71	1.26
187629--187702	33	2.2	33	85	4	96	6	5	17	70	1.29
190973--191026	27	2.0	27	85	3	74	31	11	5	51	1.60
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
193893--193972	20	4.1	18	76	12	79	35	1	2	61	1.18
193893--193972	29	2.7	28	78	14	90	35	1	2	61	1.18
193981--194184	58	3.6	57	79	6	200	45	10	17	26	1.80
193981--194154	55	3.1	57	80	9	178	48	9	14	27	1.75
201832--201973	71	2.0	72	90	1	223	40	6	16	35	1.74
202092--202151	12	4.9	12	74	13	52	43	11	10	35	1.75
202075--202151	24	3.2	24	87	5	95	42	12	9	35	1.75
202093--202162	24	2.9	24	91	0	104	42	12	11	32	1.79
204809--204852	17	2.6	17	77	0	52	56	0	0	43	0.99
208467--208517	21	2.4	22	72	21	54	33	5	0	60	1.21
236464--236509	20	2.2	21	88	3	67	30	2	6	60	1.34
236646--236685	16	2.6	16	88	4	64	30	32	20	17	1.95
259475--259785	155	2.0	155	96	0	577	25	29	11	33	1.91
264208--264293	4	21.2	4	77	11	77	65	0	33	1	1.01
264208--264293	17	5.3	17	76	13	83	65	0	33	1	1.01
264207--264286	20	3.9	21	82	8	94	63	0	35	1	1.02

Tables:   1

The End!