genome.fa.s15218.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01015218.1 Kokia drynarioides strain JFW-HI SEQ_130262, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  183870

Tables:   1   

This is table  1  of  1  ( 62 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
623--886	29	9.0	29	80	9	277	33	34	2	29	1.72
623--886	59	4.5	58	82	7	311	33	34	2	29	1.72
623--944	59	5.5	58	81	11	304	32	33	3	29	1.75
624--944	29	11.0	28	77	14	260	32	33	3	29	1.75
4158--4210	18	2.8	18	77	13	54	69	3	1	24	1.15
8312--8346	18	1.9	18	94	0	61	8	34	31	25	1.86
11788--11835	18	2.8	16	80	20	53	47	0	4	47	1.21
11916--11954	18	2.2	18	85	0	51	28	10	15	46	1.78
12079--12147	31	2.3	28	83	11	84	34	10	2	52	1.50
16237--16273	7	5.3	7	100	0	74	16	0	56	27	1.40
17385--17414	2	15.0	2	100	0	60	50	0	0	50	1.00
18786--18824	15	2.6	15	83	0	51	5	17	0	76	0.96
19599--19640	15	2.9	15	82	3	50	71	0	9	19	1.13
25791--25865	31	2.4	31	84	8	91	57	9	8	25	1.57
39956--40001	24	2.0	24	84	12	62	50	4	4	41	1.42
44774--44888	37	3.1	37	86	3	153	34	30	19	15	1.93
46989--47046	30	1.9	30	85	0	80	39	1	12	46	1.51
47855--47889	7	5.0	7	100	0	70	28	28	28	14	1.95
53632--53657	2	13.0	2	100	0	52	50	0	0	50	1.00
56533--56782	127	2.0	127	99	0	491	31	12	20	35	1.90
70200--70242	22	2.0	22	85	0	59	53	0	0	46	1.00
72467--72572	12	8.9	12	66	13	58	33	12	14	40	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
72478--72565	23	3.8	24	81	4	90	31	11	15	40	1.83
72530--72576	23	2.0	23	88	8	69	44	10	12	31	1.77
73904--73948	23	1.9	23	86	4	63	20	8	6	64	1.44
77499--77549	19	2.7	20	85	14	72	43	0	5	50	1.26
88898--88931	17	1.9	17	88	5	50	44	14	5	35	1.70
89833--89872	16	2.4	16	87	4	53	57	10	0	32	1.32
94052--94078	14	1.9	14	100	0	54	51	14	7	25	1.68
94141--94200	6	10.2	6	79	13	63	65	11	3	20	1.39
94558--94628	31	2.3	31	86	11	94	22	11	21	45	1.83
95269--95301	16	2.1	16	94	5	59	0	39	0	60	0.97
96484--96830	72	4.7	72	79	6	297	35	13	25	25	1.92
96574--96830	75	3.5	73	81	6	279	37	11	26	24	1.90
104127--104177	4	12.8	4	83	8	68	0	25	0	74	0.82
104127--104187	12	5.1	11	78	11	50	1	24	0	73	0.92
105051--105193	21	6.8	21	90	0	196	34	30	25	9	1.87
114810--114989	29	6.1	28	75	12	148	29	3	31	36	1.74
114826--114987	59	2.7	59	81	2	200	30	2	30	36	1.71
116051--116077	13	2.1	13	100	0	54	22	14	7	55	1.64
117432--117473	20	2.1	20	100	0	84	30	38	26	4	1.77
118890--118926	6	6.3	6	96	3	67	0	70	13	16	1.17
125255--125337	17	4.8	18	82	10	84	42	1	4	51	1.30
125244--125333	34	2.6	36	82	7	105	38	1	5	54	1.31
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
125277--125322	6	8.0	6	76	9	51	41	0	4	54	1.20
125244--125337	35	2.7	34	85	8	109	40	1	5	53	1.31
125244--125353	18	6.3	17	77	9	105	41	0	4	52	1.28
127203--127551	30	11.7	30	79	6	345	33	29	3	32	1.75
127201--127551	59	5.9	60	82	4	397	33	29	3	33	1.75
140324--140360	14	2.6	14	86	4	56	43	0	0	56	0.99
141014--141041	2	14.0	2	100	0	56	50	0	0	50	1.00
142339--142394	6	9.3	6	98	0	85	0	21	51	26	1.48
146747--146808	32	1.9	32	86	0	88	30	11	19	38	1.87
160649--160756	55	2.0	55	84	0	144	25	7	14	51	1.68
162983--163045	32	2.0	32	96	0	117	63	9	9	17	1.50
163098--163137	19	2.0	20	85	4	55	67	7	0	25	1.16
168256--168298	23	1.9	23	85	4	61	58	6	9	25	1.54
176498--176523	2	13.0	2	100	0	52	50	0	0	50	1.00
176827--176888	27	2.2	27	83	11	72	61	0	1	37	1.06
176943--177020	38	2.1	37	86	9	106	29	12	8	48	1.72
179010--179063	27	2.0	27	100	0	108	40	7	7	44	1.60
179013--179071	27	2.2	27	90	0	91	42	6	8	42	1.61

Tables:   1

The End!