Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NTFQ01015219.1 Kokia drynarioides strain JFW-HI SEQ_130263, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 403163
ACGTcount: A:0.34, C:0.16, G:0.16, T:0.34
Warning! 256 characters in sequence are not A, C, G, or T
File 1 of 2
Found at i:2032 original size:16 final size:16
Alignment explanation
Indices: 2011--2060 Score: 52
Period size: 16 Copynumber: 3.2 Consensus size: 16
2001 TGATGAGGAT
2011 ATTATTTTGATAATTA
1 ATTATTTTGATAATTA
*
2027 ATTATTTT-TTATATT-
1 ATTATTTTGATA-ATTA
*
2042 A-TATTTTGGTAATTA
1 ATTATTTTGATAATTA
2057 ATTA
1 ATTA
2061 GCTAGGTTTA
Statistics
Matches: 28, Mismatches: 2, Indels: 8
0.74 0.05 0.21
Matches are distributed among these distances:
14 9 0.32
15 6 0.21
16 13 0.46
ACGTcount: A:0.34, C:0.00, G:0.06, T:0.60
Consensus pattern (16 bp):
ATTATTTTGATAATTA
Found at i:2561 original size:20 final size:21
Alignment explanation
Indices: 2533--2577 Score: 56
Period size: 21 Copynumber: 2.2 Consensus size: 21
2523 TTTACTTACT
2533 ATTACTAAC-AACAAAATAAA
1 ATTACTAACTAACAAAATAAA
* * *
2553 ATTATTAACTACCAAAATTAA
1 ATTACTAACTAACAAAATAAA
2574 ATTA
1 ATTA
2578 AAATAAATTA
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
20 8 0.38
21 13 0.62
ACGTcount: A:0.58, C:0.13, G:0.00, T:0.29
Consensus pattern (21 bp):
ATTACTAACTAACAAAATAAA
Found at i:6287 original size:31 final size:31
Alignment explanation
Indices: 6249--6321 Score: 137
Period size: 31 Copynumber: 2.4 Consensus size: 31
6239 CTAAAATTTT
6249 ACTCAAACCTACCCATATTTATAAACAGTTA
1 ACTCAAACCTACCCATATTTATAAACAGTTA
*
6280 ACTCAAACCTACCCATATTTGTAAACAGTTA
1 ACTCAAACCTACCCATATTTATAAACAGTTA
6311 ACTCAAACCTA
1 ACTCAAACCTA
6322 ATTTAAATCC
Statistics
Matches: 41, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
31 41 1.00
ACGTcount: A:0.41, C:0.27, G:0.04, T:0.27
Consensus pattern (31 bp):
ACTCAAACCTACCCATATTTATAAACAGTTA
Found at i:18624 original size:14 final size:14
Alignment explanation
Indices: 18605--18632 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
18595 TTATACATGT
18605 TTTATTTTTATTTA
1 TTTATTTTTATTTA
18619 TTTATTTTTATTTA
1 TTTATTTTTATTTA
18633 GCACTTGCAC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.21, C:0.00, G:0.00, T:0.79
Consensus pattern (14 bp):
TTTATTTTTATTTA
Found at i:25929 original size:14 final size:14
Alignment explanation
Indices: 25910--25943 Score: 52
Period size: 14 Copynumber: 2.4 Consensus size: 14
25900 ATCTTAACCT
25910 AAACCC-TAAATCCC
1 AAACCCTTAAAT-CC
25924 AAACCCTTAAATCC
1 AAACCCTTAAATCC
25938 AAACCC
1 AAACCC
25944 AAACCTTAAA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
14 14 0.74
15 5 0.26
ACGTcount: A:0.44, C:0.41, G:0.00, T:0.15
Consensus pattern (14 bp):
AAACCCTTAAATCC
Found at i:25944 original size:20 final size:21
Alignment explanation
Indices: 25921--25970 Score: 68
Period size: 20 Copynumber: 2.5 Consensus size: 21
25911 AACCCTAAAT
*
25921 CCCAAACCCTTAAA-TCCAAA
1 CCCAAACCCTTAAATTACAAA
25941 CCCAAA-CCTTAAATTACAAA
1 CCCAAACCCTTAAATTACAAA
*
25961 CACAAACCCT
1 CCCAAACCCT
25971 AAACATTAGA
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
19 7 0.27
20 16 0.62
21 3 0.12
ACGTcount: A:0.46, C:0.38, G:0.00, T:0.16
Consensus pattern (21 bp):
CCCAAACCCTTAAATTACAAA
Found at i:30226 original size:18 final size:16
Alignment explanation
Indices: 30208--30265 Score: 57
Period size: 17 Copynumber: 3.4 Consensus size: 16
30198 TGAATTTTTA
30208 TTAAATTTTTATATATT
1 TTAAATTTTTATA-ATT
30225 ATT-AATTTTT-TAATT
1 -TTAAATTTTTATAATT
30240 TTAAAATATTTTATAAATT
1 TT-AAAT-TTTTAT-AATT
30259 TTAAATT
1 TTAAATT
30266 ATTTGTTGAC
Statistics
Matches: 35, Mismatches: 0, Indels: 11
0.76 0.00 0.24
Matches are distributed among these distances:
14 2 0.06
15 3 0.09
16 5 0.14
17 12 0.34
18 7 0.20
19 6 0.17
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (16 bp):
TTAAATTTTTATAATT
Found at i:30960 original size:21 final size:20
Alignment explanation
Indices: 30936--30977 Score: 59
Period size: 20 Copynumber: 2.0 Consensus size: 20
30926 AATTAATATT
30936 AATTAAG-ATAAAATTATAAAA
1 AATTAAGAATAAAA--ATAAAA
30957 AATTAAGAATAAAAATAAAA
1 AATTAAGAATAAAAATAAAA
30977 A
1 A
30978 TTATTTATAC
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
20 7 0.35
21 7 0.35
22 6 0.30
ACGTcount: A:0.71, C:0.00, G:0.05, T:0.24
Consensus pattern (20 bp):
AATTAAGAATAAAAATAAAA
Found at i:43213 original size:29 final size:29
Alignment explanation
Indices: 43180--43273 Score: 80
Period size: 31 Copynumber: 3.1 Consensus size: 29
43170 TAATTTGATG
*
43180 CATGAACTTTGATTTGATGCAATTATACA
1 CATGAACTTTGATTTGATTCAATTATACA
* * * * * *
43209 CATGAAATTTTAATTGTAGTTTAAATATATA
1 CATGAACTTTGATTTG-A-TTCAATTATACA
*
43240 CATGAACCTTTGATTTTGATTCGATTATACA
1 CATGAA-CTTTGA-TTTGATTCAATTATACA
43271 CAT
1 CAT
43274 TTAAAGAAAT
Statistics
Matches: 47, Mismatches: 14, Indels: 6
0.70 0.21 0.09
Matches are distributed among these distances:
29 13 0.28
30 1 0.02
31 25 0.53
32 5 0.11
33 3 0.06
ACGTcount: A:0.35, C:0.12, G:0.12, T:0.41
Consensus pattern (29 bp):
CATGAACTTTGATTTGATTCAATTATACA
Found at i:59770 original size:22 final size:21
Alignment explanation
Indices: 59744--59800 Score: 53
Period size: 21 Copynumber: 2.7 Consensus size: 21
59734 CTTAAAAAAA
59744 ACTTGAGGTTTTATAAAGAATT
1 ACTTGAGGTTTTATAAA-AATT
* * *
59766 GCTTG-GGATTTTACAAAACTT
1 ACTTGAGG-TTTTATAAAAATT
*
59787 ACTTGAGTTTTTAT
1 ACTTGAGGTTTTAT
59801 GAGAAAAACT
Statistics
Matches: 27, Mismatches: 6, Indels: 5
0.71 0.16 0.13
Matches are distributed among these distances:
21 14 0.52
22 13 0.48
ACGTcount: A:0.30, C:0.09, G:0.18, T:0.44
Consensus pattern (21 bp):
ACTTGAGGTTTTATAAAAATT
Found at i:66043 original size:58 final size:58
Alignment explanation
Indices: 65881--66043 Score: 204
Period size: 58 Copynumber: 2.8 Consensus size: 58
65871 ATATTATATA
* * * *
65881 TTATGATTTTTATT-AATTCATATTTTAATAAAAATTATATTAAAAATGTTATTAAATTAT
1 TTATTATTTTTATTAAATT-ATA-TTTAATAATAATTATATT-AAAATATAATTAAATTAT
** * *
65941 ACATTATTTTTATTAAATTGTATTTAATAATAATTATGTTAAAATATAATTAAATTAT
1 TTATTATTTTTATTAAATTATATTTAATAATAATTATATTAAAATATAATTAAATTAT
65999 TTATTATTTTTATTAAATTATATTTAATAATAATCT-TATTAAAAT
1 TTATTATTTTTATTAAATTATATTTAATAATAAT-TATATTAAAAT
66044 TAAAATTTAA
Statistics
Matches: 89, Mismatches: 12, Indels: 6
0.83 0.11 0.06
Matches are distributed among these distances:
58 55 0.62
59 17 0.19
60 13 0.15
61 4 0.04
ACGTcount: A:0.44, C:0.02, G:0.02, T:0.52
Consensus pattern (58 bp):
TTATTATTTTTATTAAATTATATTTAATAATAATTATATTAAAATATAATTAAATTAT
Found at i:66055 original size:28 final size:26
Alignment explanation
Indices: 66008--66060 Score: 79
Period size: 28 Copynumber: 2.0 Consensus size: 26
65998 TTTATTATTT
*
66008 TTATTAAATTATATTTAATAATAATC
1 TTATTAAATTAAATTTAATAATAATC
66034 TTATTAAAATTAAAATTTAATAATAAT
1 TTATT-AAATT-AAATTTAATAATAAT
66061 AGTCATCTAC
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 5 0.21
27 5 0.21
28 14 0.58
ACGTcount: A:0.51, C:0.02, G:0.00, T:0.47
Consensus pattern (26 bp):
TTATTAAATTAAATTTAATAATAATC
Found at i:69890 original size:23 final size:23
Alignment explanation
Indices: 69864--69910 Score: 58
Period size: 23 Copynumber: 2.0 Consensus size: 23
69854 CATTTCTTAA
*
69864 CTTTTAATTTCTGTATTTTTTTT
1 CTTTTAATTTCTCTATTTTTTTT
** *
69887 CTTTTTTTTTCTCTTTTTTTTTT
1 CTTTTAATTTCTCTATTTTTTTT
69910 C
1 C
69911 CGTTCACTAT
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
23 20 1.00
ACGTcount: A:0.06, C:0.13, G:0.02, T:0.79
Consensus pattern (23 bp):
CTTTTAATTTCTCTATTTTTTTT
Found at i:69894 original size:10 final size:11
Alignment explanation
Indices: 69879--69907 Score: 51
Period size: 10 Copynumber: 2.7 Consensus size: 11
69869 AATTTCTGTA
69879 TTTTTTTTCT-
1 TTTTTTTTCTC
69889 TTTTTTTTCTC
1 TTTTTTTTCTC
69900 TTTTTTTT
1 TTTTTTTT
69908 TTCCGTTCAC
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
10 10 0.56
11 8 0.44
ACGTcount: A:0.00, C:0.10, G:0.00, T:0.90
Consensus pattern (11 bp):
TTTTTTTTCTC
Found at i:69896 original size:12 final size:12
Alignment explanation
Indices: 69879--69909 Score: 53
Period size: 12 Copynumber: 2.6 Consensus size: 12
69869 AATTTCTGTA
69879 TTTTTTTTCTTT
1 TTTTTTTTCTTT
*
69891 TTTTTTCTCTTT
1 TTTTTTTTCTTT
69903 TTTTTTT
1 TTTTTTT
69910 CCGTTCACTA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.00, C:0.10, G:0.00, T:0.90
Consensus pattern (12 bp):
TTTTTTTTCTTT
Found at i:70098 original size:23 final size:23
Alignment explanation
Indices: 70068--70117 Score: 100
Period size: 23 Copynumber: 2.2 Consensus size: 23
70058 AATCTATACC
70068 AATTCACAATTAACAAGTCAATA
1 AATTCACAATTAACAAGTCAATA
70091 AATTCACAATTAACAAGTCAATA
1 AATTCACAATTAACAAGTCAATA
70114 AATT
1 AATT
70118 TGATATCTCT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 27 1.00
ACGTcount: A:0.52, C:0.16, G:0.04, T:0.28
Consensus pattern (23 bp):
AATTCACAATTAACAAGTCAATA
Found at i:73705 original size:15 final size:15
Alignment explanation
Indices: 73669--73719 Score: 50
Period size: 15 Copynumber: 3.3 Consensus size: 15
73659 AGTGTGGTCT
73669 GTGGAGA-GAGTATGGA
1 GTGGAGAGGAG-A-GGA
*
73685 GAGGAGAGGAGAGGA
1 GTGGAGAGGAGAGGA
* *
73700 GTGGAGTGGAGTGGA
1 GTGGAGAGGAGAGGA
73715 GTGGA
1 GTGGA
73720 ATGGAATGGA
Statistics
Matches: 30, Mismatches: 4, Indels: 3
0.81 0.11 0.08
Matches are distributed among these distances:
15 20 0.67
16 7 0.23
17 3 0.10
ACGTcount: A:0.29, C:0.00, G:0.57, T:0.14
Consensus pattern (15 bp):
GTGGAGAGGAGAGGA
Found at i:73716 original size:5 final size:5
Alignment explanation
Indices: 73681--73729 Score: 53
Period size: 5 Copynumber: 9.8 Consensus size: 5
73671 GGAGAGAGTA
* * * * *
73681 TGGAG AGGAG AGGAG AGGAG TGGAG TGGAG TGGAG TGGAA TGGAA TGGA
1 TGGAG TGGAG TGGAG TGGAG TGGAG TGGAG TGGAG TGGAG TGGAG TGGA
73730 ATGACAGAAA
Statistics
Matches: 41, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
5 41 1.00
ACGTcount: A:0.31, C:0.00, G:0.55, T:0.14
Consensus pattern (5 bp):
TGGAG
Found at i:85066 original size:13 final size:14
Alignment explanation
Indices: 85040--85068 Score: 51
Period size: 13 Copynumber: 2.1 Consensus size: 14
85030 ATTTATTATG
85040 AAATAAACATAAAA
1 AAATAAACATAAAA
85054 AAATAAA-ATAAAA
1 AAATAAACATAAAA
85067 AA
1 AA
85069 TACGTAAATC
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 8 0.53
14 7 0.47
ACGTcount: A:0.83, C:0.03, G:0.00, T:0.14
Consensus pattern (14 bp):
AAATAAACATAAAA
Found at i:93414 original size:4 final size:4
Alignment explanation
Indices: 93398--93457 Score: 61
Period size: 4 Copynumber: 15.0 Consensus size: 4
93388 ACGAAAATTG
* *
93398 AAGA AAAA AAGA AAGA ACAAA AAGA AAGA AAGA AAGA AA-A AAG- AAGA
1 AAGA AAGA AAGA AAGA A-AGA AAGA AAGA AAGA AAGA AAGA AAGA AAGA
*
93445 AAGGG AAGA AAGA
1 AA-GA AAGA AAGA
93458 GAAGGAAAAA
Statistics
Matches: 46, Mismatches: 6, Indels: 8
0.77 0.10 0.13
Matches are distributed among these distances:
3 6 0.13
4 34 0.74
5 6 0.13
ACGTcount: A:0.75, C:0.02, G:0.23, T:0.00
Consensus pattern (4 bp):
AAGA
Found at i:93455 original size:19 final size:19
Alignment explanation
Indices: 93398--93447 Score: 66
Period size: 21 Copynumber: 2.6 Consensus size: 19
93388 ACGAAAATTG
*
93398 AAGAAAAAAAGAAAGAACAAA
1 AAGAAAGAAAGAAAG-A-AAA
93419 AAGAAAGAAAGAAAGAAAA
1 AAGAAAGAAAGAAAGAAAA
93438 AAG-AAGAAAG
1 AAGAAAGAAAG
93448 GGAAGAAAGA
Statistics
Matches: 28, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
18 7 0.25
19 6 0.21
20 1 0.04
21 14 0.50
ACGTcount: A:0.78, C:0.02, G:0.20, T:0.00
Consensus pattern (19 bp):
AAGAAAGAAAGAAAGAAAA
Found at i:94583 original size:43 final size:43
Alignment explanation
Indices: 94501--94585 Score: 118
Period size: 43 Copynumber: 2.0 Consensus size: 43
94491 ATTAACATGT
* *
94501 TAAATTATATTACTTGACTCATGTTAATATGGTTGCATGTTAC
1 TAAATTATATTACTTGACTCATATTAATATGCTTGCATGTTAC
* *
94544 TAAATTATATTACTTTACTCTTATTAATAT-CTTGACATGTTA
1 TAAATTATATTACTTGACTCATATTAATATGCTTG-CATGTTA
94586 TTAATTGTGC
Statistics
Matches: 37, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
42 3 0.08
43 34 0.92
ACGTcount: A:0.32, C:0.12, G:0.09, T:0.47
Consensus pattern (43 bp):
TAAATTATATTACTTGACTCATATTAATATGCTTGCATGTTAC
Found at i:95217 original size:45 final size:45
Alignment explanation
Indices: 95153--95289 Score: 193
Period size: 45 Copynumber: 3.0 Consensus size: 45
95143 ACATAGCTTA
*
95153 TCAAGTCAAGGATATCAGCCTCAGTTTGACGAGCCACCGCAATAC
1 TCAAGCCAAGGATATCAGCCTCAGTTTGACGAGCCACCGCAATAC
** *
95198 TCAAGCCAAGGATATCAGCCTCAAATTGACGAGCCACCGTAATAC
1 TCAAGCCAAGGATATCAGCCTCAGTTTGACGAGCCACCGCAATAC
** * * *
95243 TCAAGGGAAGGATATCAGGCTGAGTTTGACGAGCCACCGCGATAC
1 TCAAGCCAAGGATATCAGCCTCAGTTTGACGAGCCACCGCAATAC
95288 TC
1 TC
95290 TATTCCTCTC
Statistics
Matches: 80, Mismatches: 12, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
45 80 1.00
ACGTcount: A:0.31, C:0.27, G:0.23, T:0.19
Consensus pattern (45 bp):
TCAAGCCAAGGATATCAGCCTCAGTTTGACGAGCCACCGCAATAC
Found at i:95326 original size:21 final size:21
Alignment explanation
Indices: 95284--95322 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
95274 AGCCACCGCG
*
95284 ATACTCTATTCCTCTCGGGCA
1 ATACTCTACTCCTCTCGGGCA
95305 ATACTCTACTCCTC-CGGG
1 ATACTCTACTCCTCTCGGG
95323 GCAAATGGAC
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 4 0.24
21 13 0.76
ACGTcount: A:0.18, C:0.36, G:0.15, T:0.31
Consensus pattern (21 bp):
ATACTCTACTCCTCTCGGGCA
Found at i:98639 original size:20 final size:19
Alignment explanation
Indices: 98612--98657 Score: 56
Period size: 20 Copynumber: 2.4 Consensus size: 19
98602 AATAAATCTG
*
98612 TTAAAAATTAAATAAAATT
1 TTAAAAATAAAATAAAATT
* *
98631 TTAATAAATAAAATGAGATT
1 TTAA-AAATAAAATAAAATT
98651 TTAAAAA
1 TTAAAAA
98658 GATATCATAT
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
19 7 0.30
20 16 0.70
ACGTcount: A:0.61, C:0.00, G:0.04, T:0.35
Consensus pattern (19 bp):
TTAAAAATAAAATAAAATT
Found at i:98714 original size:12 final size:12
Alignment explanation
Indices: 98696--98741 Score: 51
Period size: 12 Copynumber: 3.8 Consensus size: 12
98686 AAACACATTA
98696 CCTTTCTTTCATT
1 CCTTTCTTTC-TT
98709 -CTTTC-TTCTTT
1 CCTTTCTTTC-TT
*
98720 CCTTTCCTTCTT
1 CCTTTCTTTCTT
98732 CCTTTCTTTC
1 CCTTTCTTTC
98742 CCGTTTATTT
Statistics
Matches: 29, Mismatches: 2, Indels: 5
0.81 0.06 0.14
Matches are distributed among these distances:
11 5 0.17
12 21 0.72
13 3 0.10
ACGTcount: A:0.02, C:0.35, G:0.00, T:0.63
Consensus pattern (12 bp):
CCTTTCTTTCTT
Found at i:98732 original size:16 final size:16
Alignment explanation
Indices: 98701--98742 Score: 50
Period size: 16 Copynumber: 2.6 Consensus size: 16
98691 CATTACCTTT
* *
98701 CTTTCATTCTTTCTT-
1 CTTTCTTTCCTTCTTC
98716 CTTTCCTTTCCTTCTTC
1 CTTT-CTTTCCTTCTTC
98733 CTTTCTTTCC
1 CTTTCTTTCC
98743 CGTTTATTTG
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
15 4 0.17
16 15 0.65
17 4 0.17
ACGTcount: A:0.02, C:0.36, G:0.00, T:0.62
Consensus pattern (16 bp):
CTTTCTTTCCTTCTTC
Found at i:114709 original size:3 final size:3
Alignment explanation
Indices: 114696--114743 Score: 78
Period size: 3 Copynumber: 16.0 Consensus size: 3
114686 GTGCTTAAAA
* *
114696 AAG AGG AAG AAG AAG AAG AAG AAG AAG AAG AAT AAG AAG AAG AAG AAG
1 AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG
114744 CAGACAAAAG
Statistics
Matches: 41, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
3 41 1.00
ACGTcount: A:0.65, C:0.00, G:0.33, T:0.02
Consensus pattern (3 bp):
AAG
Found at i:128528 original size:73 final size:73
Alignment explanation
Indices: 128358--128517 Score: 320
Period size: 73 Copynumber: 2.2 Consensus size: 73
128348 AGCATTTAGG
128358 GTGTGCTTGGTTGGGTGAAAAAGTGGAGGGATGGGAGGAGGGAGTGGAAAAGTGGAAAGAAAATA
1 GTGTGCTTGGTTGGGTGAAAAAGTGGAGGGATGGGAGGAGGGAGTGGAAAAGTGGAAAGAAAATA
128423 AATTTTGA
66 AATTTTGA
128431 GTGTGCTTGGTTGGGTGAAAAAGTGGAGGGATGGGAGGAGGGAGTGGAAAAGTGGAAAGAAAATA
1 GTGTGCTTGGTTGGGTGAAAAAGTGGAGGGATGGGAGGAGGGAGTGGAAAAGTGGAAAGAAAATA
128496 AATTTTGA
66 AATTTTGA
128504 GTGTGCTTGGTTGG
1 GTGTGCTTGGTTGG
128518 AAAGAAAAGT
Statistics
Matches: 87, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
73 87 1.00
ACGTcount: A:0.31, C:0.02, G:0.43, T:0.24
Consensus pattern (73 bp):
GTGTGCTTGGTTGGGTGAAAAAGTGGAGGGATGGGAGGAGGGAGTGGAAAAGTGGAAAGAAAATA
AATTTTGA
Found at i:128550 original size:73 final size:73
Alignment explanation
Indices: 128358--128550 Score: 212
Period size: 73 Copynumber: 2.6 Consensus size: 73
128348 AGCATTTAGG
** * ** * *
128358 GTGTGCTTGGTTGGGTGAAAAAGTGGAGGGATGGGAGGAGGGAGTGGAAAAGTGGAAAGAAAATA
1 GTGTGCTTGGTTGGAAGAAAAAGTGGAGGGATAGGAAAAAGAAGTGGAAAAGTGGAAAGAAAATA
128423 AATTTTGA
66 AATTTTGA
** * ** * *
128431 GTGTGCTTGGTTGGGTGAAAAAGTGGAGGGATGGGAGGAGGGAGTGGAAAAGTGGAAAGAAAATA
1 GTGTGCTTGGTTGGAAGAAAAAGTGGAGGGATAGGAAAAAGAAGTGGAAAAGTGGAAAGAAAATA
128496 AATTTTGA
66 AATTTTGA
128504 GTGTGCTTGGTTGGAA-AGAAAAGTGTGA-GGA-AGGAAAATAGAAGTGG
1 GTGTGCTTGGTTGGAAGA-AAAAGTG-GAGGGATAGGAAAA-AGAAGTGG
128551 TGATCATTTT
Statistics
Matches: 110, Mismatches: 7, Indels: 6
0.89 0.06 0.05
Matches are distributed among these distances:
72 5 0.05
73 103 0.94
74 2 0.02
ACGTcount: A:0.35, C:0.02, G:0.42, T:0.22
Consensus pattern (73 bp):
GTGTGCTTGGTTGGAAGAAAAAGTGGAGGGATAGGAAAAAGAAGTGGAAAAGTGGAAAGAAAATA
AATTTTGA
Found at i:134534 original size:3 final size:3
Alignment explanation
Indices: 134519--134548 Score: 51
Period size: 3 Copynumber: 10.0 Consensus size: 3
134509 GCCTATATGG
*
134519 ATC ATC CTC ATC ATC ATC ATC ATC ATC ATC
1 ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC
134549 TTCTTCTTCT
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
3 25 1.00
ACGTcount: A:0.30, C:0.37, G:0.00, T:0.33
Consensus pattern (3 bp):
ATC
Found at i:136642 original size:39 final size:40
Alignment explanation
Indices: 136598--136673 Score: 145
Period size: 40 Copynumber: 1.9 Consensus size: 40
136588 CCATTTTTTA
136598 TCCTTGCA-TTGCCTCTACGTGTAGAAAGCCATTAAAACC
1 TCCTTGCATTTGCCTCTACGTGTAGAAAGCCATTAAAACC
136637 TCCTTGCATTTGCCTCTACGTGTAGAAAGCCATTAAA
1 TCCTTGCATTTGCCTCTACGTGTAGAAAGCCATTAAA
136674 GATGGAGGTT
Statistics
Matches: 36, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
39 8 0.22
40 28 0.78
ACGTcount: A:0.28, C:0.26, G:0.16, T:0.30
Consensus pattern (40 bp):
TCCTTGCATTTGCCTCTACGTGTAGAAAGCCATTAAAACC
Found at i:138512 original size:2 final size:2
Alignment explanation
Indices: 138505--138529 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
138495 TTATTTTGGT
138505 TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA T
138530 TCCAATCTTA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:143082 original size:19 final size:19
Alignment explanation
Indices: 143050--143088 Score: 53
Period size: 20 Copynumber: 2.1 Consensus size: 19
143040 CTCTCTCAAC
143050 AAAAAATTCAAAATATTTAT
1 AAAAAATTCAAAAT-TTTAT
*
143070 AAAAATTTC-AAATTTTAT
1 AAAAAATTCAAAATTTTAT
143088 A
1 A
143089 TTTTAAAAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
18 6 0.33
19 4 0.22
20 8 0.44
ACGTcount: A:0.56, C:0.05, G:0.00, T:0.38
Consensus pattern (19 bp):
AAAAAATTCAAAATTTTAT
Found at i:143107 original size:11 final size:11
Alignment explanation
Indices: 143088--143118 Score: 53
Period size: 11 Copynumber: 2.8 Consensus size: 11
143078 CAAATTTTAT
*
143088 ATTTTAAAAAA
1 ATTTAAAAAAA
143099 ATTTAAAAAAA
1 ATTTAAAAAAA
143110 ATTTAAAAA
1 ATTTAAAAA
143119 TTTTCTAAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
11 19 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (11 bp):
ATTTAAAAAAA
Found at i:151519 original size:14 final size:14
Alignment explanation
Indices: 151500--151530 Score: 53
Period size: 14 Copynumber: 2.2 Consensus size: 14
151490 TAAGTTTAAA
151500 AAATTTAATTAATT
1 AAATTTAATTAATT
*
151514 AAATTTATTTAATT
1 AAATTTAATTAATT
151528 AAA
1 AAA
151531 AATCTATTCT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (14 bp):
AAATTTAATTAATT
Found at i:152161 original size:14 final size:15
Alignment explanation
Indices: 152137--152169 Score: 50
Period size: 14 Copynumber: 2.3 Consensus size: 15
152127 TTTACATTTT
*
152137 TTTTATATTTTAGGG
1 TTTTATATTTTAAGG
152152 TTTT-TATTTTAAGG
1 TTTTATATTTTAAGG
152166 TTTT
1 TTTT
152170 GATGATTTAT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
14 13 0.76
15 4 0.24
ACGTcount: A:0.18, C:0.00, G:0.15, T:0.67
Consensus pattern (15 bp):
TTTTATATTTTAAGG
Found at i:152200 original size:17 final size:18
Alignment explanation
Indices: 152180--152214 Score: 54
Period size: 17 Copynumber: 2.0 Consensus size: 18
152170 GATGATTTAT
*
152180 ATTTTTTA-GGTTTTAAG
1 ATTTTTTATGGATTTAAG
152197 ATTTTTTATGGATTTAAG
1 ATTTTTTATGGATTTAAG
152215 GCTTTTCATG
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 8 0.50
18 8 0.50
ACGTcount: A:0.26, C:0.00, G:0.17, T:0.57
Consensus pattern (18 bp):
ATTTTTTATGGATTTAAG
Found at i:164733 original size:21 final size:21
Alignment explanation
Indices: 164703--164744 Score: 75
Period size: 21 Copynumber: 2.0 Consensus size: 21
164693 ATGGTGCAAA
*
164703 TGAAGTATTTTAACTCGATTG
1 TGAAGCATTTTAACTCGATTG
164724 TGAAGCATTTTAACTCGATTG
1 TGAAGCATTTTAACTCGATTG
164745 GCGGTGACAA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.29, C:0.12, G:0.19, T:0.40
Consensus pattern (21 bp):
TGAAGCATTTTAACTCGATTG
Found at i:173111 original size:8 final size:8
Alignment explanation
Indices: 173093--173144 Score: 63
Period size: 8 Copynumber: 6.5 Consensus size: 8
173083 TAAATAGATG
173093 TTTAA-TT
1 TTTAATTT
173100 TTTAATTT
1 TTTAATTT
*
173108 TTTAAATT
1 TTTAATTT
173116 TTTAA-TT
1 TTTAATTT
173123 TTTAATTTTT
1 TTTAA--TTT
173133 TTTAATTT
1 TTTAATTT
173141 TTTA
1 TTTA
173145 TATTCTTATA
Statistics
Matches: 40, Mismatches: 1, Indels: 7
0.83 0.02 0.15
Matches are distributed among these distances:
7 12 0.30
8 21 0.52
10 7 0.17
ACGTcount: A:0.27, C:0.00, G:0.00, T:0.73
Consensus pattern (8 bp):
TTTAATTT
Found at i:173123 original size:23 final size:24
Alignment explanation
Indices: 173093--173142 Score: 84
Period size: 24 Copynumber: 2.1 Consensus size: 24
173083 TAAATAGATG
173093 TTTAATTTTTAA-TTTTTTAAATT
1 TTTAATTTTTAATTTTTTTAAATT
*
173116 TTTAATTTTTAATTTTTTTTAATT
1 TTTAATTTTTAATTTTTTTAAATT
173140 TTT
1 TTT
173143 TATATTCTTA
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
23 12 0.48
24 13 0.52
ACGTcount: A:0.26, C:0.00, G:0.00, T:0.74
Consensus pattern (24 bp):
TTTAATTTTTAATTTTTTTAAATT
Found at i:173142 original size:7 final size:7
Alignment explanation
Indices: 173093--173132 Score: 62
Period size: 7 Copynumber: 5.4 Consensus size: 7
173083 TAAATAGATG
173093 TTTAATT
1 TTTAATT
173100 TTTAATTT
1 TTTAA-TT
173108 TTTAAATT
1 TTT-AATT
173116 TTTAATT
1 TTTAATT
173123 TTTAATT
1 TTTAATT
173130 TTT
1 TTT
173133 TTTAATTTTT
Statistics
Matches: 31, Mismatches: 0, Indels: 4
0.89 0.00 0.11
Matches are distributed among these distances:
7 19 0.61
8 10 0.32
9 2 0.06
ACGTcount: A:0.28, C:0.00, G:0.00, T:0.72
Consensus pattern (7 bp):
TTTAATT
Found at i:173165 original size:33 final size:32
Alignment explanation
Indices: 173098--173165 Score: 84
Period size: 33 Copynumber: 2.1 Consensus size: 32
173088 AGATGTTTAA
*
173098 TTTTTAATTTTTTAAATTTTTAATTTTTAATTT
1 TTTTTAATTTTTTAAATTTTTAATTATT-ATTT
* * *
173131 TTTTTAATTTTTTATATTCTT-ATAATTATTT
1 TTTTTAATTTTTTAAATTTTTAATTATTATTT
173162 TTTT
1 TTTT
173166 CTATTTATGT
Statistics
Matches: 31, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
31 8 0.26
32 4 0.13
33 19 0.61
ACGTcount: A:0.25, C:0.01, G:0.00, T:0.74
Consensus pattern (32 bp):
TTTTTAATTTTTTAAATTTTTAATTATTATTT
Found at i:175975 original size:9 final size:9
Alignment explanation
Indices: 175961--175985 Score: 50
Period size: 9 Copynumber: 2.8 Consensus size: 9
175951 AAATAGGTTT
175961 CATTTGACA
1 CATTTGACA
175970 CATTTGACA
1 CATTTGACA
175979 CATTTGA
1 CATTTGA
175986 ATTGGTCTGA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 16 1.00
ACGTcount: A:0.32, C:0.20, G:0.12, T:0.36
Consensus pattern (9 bp):
CATTTGACA
Found at i:179953 original size:28 final size:28
Alignment explanation
Indices: 179900--179955 Score: 78
Period size: 28 Copynumber: 2.0 Consensus size: 28
179890 ACTCCTAATT
**
179900 AAAATTCAAATATGGCTACCTCAAAAAG
1 AAAATTCAAATATGGCTACAACAAAAAG
*
179928 AAAATTCAAATATGG-TAGAACAAAAAG
1 AAAATTCAAATATGGCTACAACAAAAAG
179955 A
1 A
179956 GTGACAGCCT
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
27 10 0.40
28 15 0.60
ACGTcount: A:0.55, C:0.12, G:0.12, T:0.20
Consensus pattern (28 bp):
AAAATTCAAATATGGCTACAACAAAAAG
Found at i:181392 original size:16 final size:16
Alignment explanation
Indices: 181371--181403 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
181361 AGTCGAATTG
181371 CATTTTGCTCCATCTA
1 CATTTTGCTCCATCTA
*
181387 CATTTTGCTCCTTCTA
1 CATTTTGCTCCATCTA
181403 C
1 C
181404 TCAAAAAACA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.15, C:0.33, G:0.06, T:0.45
Consensus pattern (16 bp):
CATTTTGCTCCATCTA
Found at i:185915 original size:14 final size:15
Alignment explanation
Indices: 185891--185935 Score: 51
Period size: 14 Copynumber: 3.1 Consensus size: 15
185881 ATTTTGATAT
185891 TTTTATGTATTTTA-A
1 TTTTAT-TATTTTACA
*
185906 TTTTATTA-TTCACA
1 TTTTATTATTTTACA
185920 TTTTATTATTTT-CA
1 TTTTATTATTTTACA
185934 TT
1 TT
185936 ATTCTAAATC
Statistics
Matches: 26, Mismatches: 2, Indels: 5
0.79 0.06 0.15
Matches are distributed among these distances:
13 3 0.12
14 15 0.58
15 8 0.31
ACGTcount: A:0.24, C:0.07, G:0.02, T:0.67
Consensus pattern (15 bp):
TTTTATTATTTTACA
Found at i:186011 original size:22 final size:22
Alignment explanation
Indices: 185967--186011 Score: 54
Period size: 22 Copynumber: 2.0 Consensus size: 22
185957 AATGTATTTG
* *
185967 ATTAAATTATTGTAACAAGTTA
1 ATTAAATTATTATAACAAATTA
* *
185989 ATTAAATTATTATCAGAAATTA
1 ATTAAATTATTATAACAAATTA
186011 A
1 A
186012 CTCGATATTG
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.49, C:0.04, G:0.07, T:0.40
Consensus pattern (22 bp):
ATTAAATTATTATAACAAATTA
Found at i:186054 original size:15 final size:16
Alignment explanation
Indices: 186034--186063 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
186024 TTATAAACAA
186034 TTTAA-TTTAATATTT
1 TTTAATTTTAATATTT
186049 TTTAATTTTAATATT
1 TTTAATTTTAATATT
186064 ATACATATTT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 5 0.36
16 9 0.64
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (16 bp):
TTTAATTTTAATATTT
Found at i:188692 original size:16 final size:16
Alignment explanation
Indices: 188673--188724 Score: 54
Period size: 15 Copynumber: 3.4 Consensus size: 16
188663 TTTCAACAAA
188673 ATAAAAATTTATTACC
1 ATAAAAATTTATTACC
* * *
188689 ATAAAAATTAAAT-GC
1 ATAAAAATTTATTACC
*
188704 ATACAAATTTATTACC
1 ATAAAAATTTATTACC
188720 A-AAAA
1 ATAAAA
188725 TAAAACGTAT
Statistics
Matches: 27, Mismatches: 8, Indels: 3
0.71 0.21 0.08
Matches are distributed among these distances:
15 14 0.52
16 13 0.48
ACGTcount: A:0.56, C:0.12, G:0.02, T:0.31
Consensus pattern (16 bp):
ATAAAAATTTATTACC
Found at i:188735 original size:19 final size:19
Alignment explanation
Indices: 188713--188749 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
188703 CATACAAATT
*
188713 TATTACCAAAAATAAAACG
1 TATTACCAAAAAGAAAACG
*
188732 TATTTCCAAAAAGAAAAC
1 TATTACCAAAAAGAAAAC
188750 TTAAAATATG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 16 1.00
ACGTcount: A:0.57, C:0.16, G:0.05, T:0.22
Consensus pattern (19 bp):
TATTACCAAAAAGAAAACG
Found at i:189522 original size:10 final size:10
Alignment explanation
Indices: 189496--189533 Score: 51
Period size: 10 Copynumber: 3.8 Consensus size: 10
189486 TCTCTATTTA
189496 TTTAAAT-AT
1 TTTAAATAAT
*
189505 TTAAAAATAAT
1 TT-TAAATAAT
189516 TTTAAATAAT
1 TTTAAATAAT
189526 TTTAAATA
1 TTTAAATA
189534 TTATATCAAA
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
9 2 0.08
10 19 0.76
11 4 0.16
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (10 bp):
TTTAAATAAT
Found at i:191419 original size:20 final size:21
Alignment explanation
Indices: 191396--191435 Score: 64
Period size: 20 Copynumber: 2.0 Consensus size: 21
191386 TAATAGTACA
*
191396 TTAAATTAAA-AAATTAAGTC
1 TTAAATTAAAGAAAATAAGTC
191416 TTAAATTAAAGAAAATAAGT
1 TTAAATTAAAGAAAATAAGT
191436 GTAATTATCT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 10 0.56
21 8 0.44
ACGTcount: A:0.57, C:0.03, G:0.07, T:0.33
Consensus pattern (21 bp):
TTAAATTAAAGAAAATAAGTC
Found at i:191736 original size:72 final size:72
Alignment explanation
Indices: 191647--191804 Score: 307
Period size: 72 Copynumber: 2.2 Consensus size: 72
191637 AGTGGGATTA
*
191647 AAAAAAACGTATTTTCAACAACAAAAAATATATTTATTACCATAAATATTAAATGCATACAGATT
1 AAAAAAACGTATTTTCAACAAAAAAAAATATATTTATTACCATAAATATTAAATGCATACAGATT
191712 TATTACC
66 TATTACC
191719 AAAAAAACGTATTTTCAACAAAAAAAAATATATTTATTACCATAAATATTAAATGCATACAGATT
1 AAAAAAACGTATTTTCAACAAAAAAAAATATATTTATTACCATAAATATTAAATGCATACAGATT
191784 TATTACC
66 TATTACC
191791 AAAAAAACGTATTT
1 AAAAAAACGTATTT
191805 CCAAAAAGAA
Statistics
Matches: 85, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
72 85 1.00
ACGTcount: A:0.51, C:0.13, G:0.04, T:0.32
Consensus pattern (72 bp):
AAAAAAACGTATTTTCAACAAAAAAAAATATATTTATTACCATAAATATTAAATGCATACAGATT
TATTACC
Found at i:195874 original size:16 final size:17
Alignment explanation
Indices: 195850--195889 Score: 57
Period size: 16 Copynumber: 2.4 Consensus size: 17
195840 ATAAAAAGAC
195850 AAGAAATGA-AGAATGAA
1 AAGAAATGAGAG-ATGAA
195867 AA-AAATGAGAGATGAA
1 AAGAAATGAGAGATGAA
195883 AAGAAAT
1 AAGAAAT
195890 AGCGTATTTT
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
16 13 0.62
17 8 0.38
ACGTcount: A:0.65, C:0.00, G:0.23, T:0.12
Consensus pattern (17 bp):
AAGAAATGAGAGATGAA
Found at i:197267 original size:68 final size:64
Alignment explanation
Indices: 197152--197280 Score: 177
Period size: 68 Copynumber: 2.0 Consensus size: 64
197142 ACCGAATAAG
*
197152 AAAGACTCCTAATATTAGGGATTTGGAACTAATTTTGAAGCTAAAAGAAAGAAATGAATAAAAAA
1 AAAGAATCCTAATATTAGGGATTTGGAACTAATTTTGAAGCTAAAAGAAAGAAA-GAA-AAAAAA
197217 C
64 C
** * *
197218 AAAGAATCCTGAATATTAGGGATTTGGAGACTAATTTTGAATTTGAAAGACAGAAAGAAAAAA
1 AAAGAATCCT-AATATTAGGGATTTGGA-ACTAATTTTGAAGCTAAAAGAAAGAAAGAAAAAA
197281 CCCATAAAAA
Statistics
Matches: 56, Mismatches: 5, Indels: 4
0.86 0.08 0.06
Matches are distributed among these distances:
66 13 0.23
67 20 0.36
68 23 0.41
ACGTcount: A:0.49, C:0.08, G:0.19, T:0.25
Consensus pattern (64 bp):
AAAGAATCCTAATATTAGGGATTTGGAACTAATTTTGAAGCTAAAAGAAAGAAAGAAAAAAAAC
Found at i:207419 original size:86 final size:86
Alignment explanation
Indices: 207313--207475 Score: 220
Period size: 92 Copynumber: 1.8 Consensus size: 86
207303 ATTTCTTCCT
* * *
207313 TTTTAATTGGTGCCATGAATTG-GAGTGCATCAAAATCGATCTGTATTTGAAGAGTCTTCCCTTA
1 TTTTAATTGGTGCCATGAATTGTAAGTGCACCAAAATCGATCAGTATTTGAAGAGTCTTCCCTTA
207377 ATCTTTTGAAGAATCACTTTC
66 ATCTTTTGAAGAATCACTTTC
207398 TTTTAATTGGTGCCCATGAATTGAACTTTAAGTGCACCAAAATCGATCAGTATTTGAAGAGTCTT
1 TTTTAATTGGTG-CCATGAATTG-----TAAGTGCACCAAAATCGATCAGTATTTGAAGAGTCTT
* *
207463 CTCTTGATCTTTT
60 CCCTTAATCTTTT
207476 AAAGGGTTAC
Statistics
Matches: 66, Mismatches: 5, Indels: 7
0.85 0.06 0.09
Matches are distributed among these distances:
85 12 0.18
86 10 0.15
92 44 0.67
ACGTcount: A:0.27, C:0.17, G:0.17, T:0.39
Consensus pattern (86 bp):
TTTTAATTGGTGCCATGAATTGTAAGTGCACCAAAATCGATCAGTATTTGAAGAGTCTTCCCTTA
ATCTTTTGAAGAATCACTTTC
Found at i:208142 original size:19 final size:19
Alignment explanation
Indices: 208120--208157 Score: 51
Period size: 19 Copynumber: 2.0 Consensus size: 19
208110 TTAAACTCAA
*
208120 ACTTGAAATTTTGT-ATTTT
1 ACTT-AAATTCTGTCATTTT
208139 ACTTAAATTCTGTCATTTT
1 ACTTAAATTCTGTCATTTT
208158 TCGAATGGGT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
18 8 0.47
19 9 0.53
ACGTcount: A:0.26, C:0.11, G:0.08, T:0.55
Consensus pattern (19 bp):
ACTTAAATTCTGTCATTTT
Found at i:211333 original size:37 final size:32
Alignment explanation
Indices: 211257--211333 Score: 75
Period size: 37 Copynumber: 2.2 Consensus size: 32
211247 ATATAAAAAA
211257 ATATTATTAAATATTTATAAATTGTAATACAT
1 ATATTATTAAATATTTATAAATTGTAATACAT
211289 ATTTATTATTAAAATATTAATATAAATATGTTCAATA-AT
1 A--TATTATT-AAATATT--TATAAAT-TG-T-AATACAT
211328 ATATTA
1 ATATTA
211334 AGAATATTAC
Statistics
Matches: 37, Mismatches: 0, Indels: 11
0.77 0.00 0.23
Matches are distributed among these distances:
32 1 0.03
34 7 0.19
35 7 0.19
37 12 0.32
38 2 0.05
39 4 0.11
40 4 0.11
ACGTcount: A:0.48, C:0.03, G:0.03, T:0.47
Consensus pattern (32 bp):
ATATTATTAAATATTTATAAATTGTAATACAT
Found at i:215066 original size:2 final size:2
Alignment explanation
Indices: 215059--215090 Score: 64
Period size: 2 Copynumber: 16.0 Consensus size: 2
215049 CTCATCCACA
215059 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
215091 GCAAAAGAAG
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.50, C:0.00, G:0.50, T:0.00
Consensus pattern (2 bp):
AG
Found at i:223493 original size:16 final size:18
Alignment explanation
Indices: 223467--223501 Score: 56
Period size: 17 Copynumber: 2.1 Consensus size: 18
223457 TAAAGTTGAG
223467 TTGAGAAAATTA-TTTAA
1 TTGAGAAAATTAGTTTAA
223484 TTGA-AAAATTAGTTTAA
1 TTGAGAAAATTAGTTTAA
223501 T
1 T
223502 GAATTAATTA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 7 0.41
17 10 0.59
ACGTcount: A:0.46, C:0.00, G:0.11, T:0.43
Consensus pattern (18 bp):
TTGAGAAAATTAGTTTAA
Found at i:228926 original size:26 final size:26
Alignment explanation
Indices: 228890--228968 Score: 79
Period size: 26 Copynumber: 3.0 Consensus size: 26
228880 ACTATTTATC
*
228890 ATAAAGATAAATAATAATTAATTAAA
1 ATAAAGTTAAATAATAATTAATTAAA
* * *
228916 ATAAAGTTAAATAATATTTACTTAAT
1 ATAAAGTTAAATAATAATTAATTAAA
* *
228942 ATTAATTTCATAATAATAATT-ATTAAA
1 ATAAAGTT-A-AATAATAATTAATTAAA
228969 TGATTACTTC
Statistics
Matches: 42, Mismatches: 9, Indels: 3
0.78 0.17 0.06
Matches are distributed among these distances:
26 28 0.67
27 5 0.12
28 9 0.21
ACGTcount: A:0.56, C:0.03, G:0.03, T:0.39
Consensus pattern (26 bp):
ATAAAGTTAAATAATAATTAATTAAA
Found at i:230243 original size:20 final size:20
Alignment explanation
Indices: 230218--230255 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
230208 AAAATATATA
*
230218 ACAAATAACAATAAAAATAC
1 ACAAATAACAAAAAAAATAC
*
230238 ACAAATAATAAAAAAAAT
1 ACAAATAACAAAAAAAAT
230256 TCAATTTTTT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.74, C:0.11, G:0.00, T:0.16
Consensus pattern (20 bp):
ACAAATAACAAAAAAAATAC
Found at i:230619 original size:22 final size:22
Alignment explanation
Indices: 230594--230637 Score: 70
Period size: 22 Copynumber: 2.0 Consensus size: 22
230584 CTTATATTGT
230594 TTAACAATTTTTAAAAAAAAAA
1 TTAACAATTTTTAAAAAAAAAA
**
230616 TTAAGGATTTTTAAAAAAAAAA
1 TTAACAATTTTTAAAAAAAAAA
230638 GTAAGAATGG
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.61, C:0.02, G:0.05, T:0.32
Consensus pattern (22 bp):
TTAACAATTTTTAAAAAAAAAA
Found at i:230642 original size:22 final size:22
Alignment explanation
Indices: 230600--230642 Score: 77
Period size: 22 Copynumber: 2.0 Consensus size: 22
230590 TTGTTTAACA
*
230600 ATTTTTAAAAAAAAAATTAAGG
1 ATTTTTAAAAAAAAAAGTAAGG
230622 ATTTTTAAAAAAAAAAGTAAG
1 ATTTTTAAAAAAAAAAGTAAG
230643 AATGGTTAAA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.60, C:0.00, G:0.09, T:0.30
Consensus pattern (22 bp):
ATTTTTAAAAAAAAAAGTAAGG
Found at i:230651 original size:22 final size:22
Alignment explanation
Indices: 230604--230652 Score: 62
Period size: 22 Copynumber: 2.2 Consensus size: 22
230594 TTAACAATTT
* * **
230604 TTAAAAAAAAAATTAAGGATTT
1 TTAAAAAAAAAAGTAAGAATGG
230626 TTAAAAAAAAAAGTAAGAATGG
1 TTAAAAAAAAAAGTAAGAATGG
230648 TTAAA
1 TTAAA
230653 GGTGGATCTA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.61, C:0.00, G:0.12, T:0.27
Consensus pattern (22 bp):
TTAAAAAAAAAAGTAAGAATGG
Found at i:244512 original size:69 final size:69
Alignment explanation
Indices: 244401--244540 Score: 271
Period size: 69 Copynumber: 2.0 Consensus size: 69
244391 AGTTTGGGTT
*
244401 AATTAAATTGGTGAAACTGTTGCCATCAAATGGTGGAAATCAATAGGTCTCTTTTATTTTCTACA
1 AATTAAATTGGTGAAACTGTTGCCATCAAATGGTGGAAATCAATAGGTCTCTCTTATTTTCTACA
244466 TGTG
66 TGTG
244470 AATTAAATTGGTGAAACTGTTGCCATCAAATGGTGGAAATCAATAGGTCTCTCTTATTTTCTACA
1 AATTAAATTGGTGAAACTGTTGCCATCAAATGGTGGAAATCAATAGGTCTCTCTTATTTTCTACA
244535 TGTG
66 TGTG
244539 AA
1 AA
244541 AGTGATCATT
Statistics
Matches: 70, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
69 70 1.00
ACGTcount: A:0.31, C:0.14, G:0.19, T:0.36
Consensus pattern (69 bp):
AATTAAATTGGTGAAACTGTTGCCATCAAATGGTGGAAATCAATAGGTCTCTCTTATTTTCTACA
TGTG
Found at i:253531 original size:3 final size:3
Alignment explanation
Indices: 253525--253549 Score: 50
Period size: 3 Copynumber: 8.3 Consensus size: 3
253515 GGAAGTTATT
253525 ATA ATA ATA ATA ATA ATA ATA ATA A
1 ATA ATA ATA ATA ATA ATA ATA ATA A
253550 ATTCCCTTCT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 22 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (3 bp):
ATA
Found at i:254158 original size:12 final size:12
Alignment explanation
Indices: 254138--254169 Score: 55
Period size: 12 Copynumber: 2.7 Consensus size: 12
254128 AATTAAAAGG
254138 GAAGAAGATGAA
1 GAAGAAGATGAA
*
254150 GATGAAGATGAA
1 GAAGAAGATGAA
254162 GAAGAAGA
1 GAAGAAGA
254170 AGAGAGGTGT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.56, C:0.00, G:0.34, T:0.09
Consensus pattern (12 bp):
GAAGAAGATGAA
Found at i:263358 original size:2 final size:2
Alignment explanation
Indices: 263351--263386 Score: 72
Period size: 2 Copynumber: 18.0 Consensus size: 2
263341 TACCTTGAAG
263351 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA
1 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA
263387 ATGTCTGTCT
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 34 1.00
ACGTcount: A:0.50, C:0.00, G:0.50, T:0.00
Consensus pattern (2 bp):
GA
Found at i:265385 original size:19 final size:20
Alignment explanation
Indices: 265342--265387 Score: 60
Period size: 19 Copynumber: 2.4 Consensus size: 20
265332 TAAATATCAC
*
265342 ATTTTAT-TTTTATATAATA
1 ATTTTATATTTCATATAATA
*
265361 AATTTATATTTCATATAA-A
1 ATTTTATATTTCATATAATA
265380 ATTTTATA
1 ATTTTATA
265388 AACGATACAT
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
19 14 0.61
20 9 0.39
ACGTcount: A:0.41, C:0.02, G:0.00, T:0.57
Consensus pattern (20 bp):
ATTTTATATTTCATATAATA
Found at i:267898 original size:16 final size:17
Alignment explanation
Indices: 267877--267909 Score: 50
Period size: 16 Copynumber: 2.0 Consensus size: 17
267867 GTTGTGATAT
267877 TAGTGGCTT-CCATTAA
1 TAGTGGCTTGCCATTAA
*
267893 TAGTGGTTTGCCATTAA
1 TAGTGGCTTGCCATTAA
267910 GGAACATTAG
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 8 0.53
17 7 0.47
ACGTcount: A:0.24, C:0.15, G:0.21, T:0.39
Consensus pattern (17 bp):
TAGTGGCTTGCCATTAA
Found at i:267953 original size:22 final size:23
Alignment explanation
Indices: 267923--267991 Score: 90
Period size: 22 Copynumber: 3.1 Consensus size: 23
267913 ACATTAGCGC
*
267923 GCTTACTGTTCTA-CATTTTGTGT
1 GCTT-CTGTTCTAGCATTGTGTGT
*
267946 GCTTCTGTT-TAGCACTGTGTGT
1 GCTTCTGTTCTAGCATTGTGTGT
267968 GCTTCTGTTC-AGCATTGTGTGT
1 GCTTCTGTTCTAGCATTGTGTGT
267990 GC
1 GC
267992 CACTGTTTCC
Statistics
Matches: 41, Mismatches: 3, Indels: 5
0.84 0.06 0.10
Matches are distributed among these distances:
21 2 0.05
22 35 0.85
23 4 0.10
ACGTcount: A:0.10, C:0.19, G:0.25, T:0.46
Consensus pattern (23 bp):
GCTTCTGTTCTAGCATTGTGTGT
Found at i:268021 original size:24 final size:25
Alignment explanation
Indices: 267994--268047 Score: 74
Period size: 25 Copynumber: 2.2 Consensus size: 25
267984 GTGTGTGCCA
* *
267994 CTGTTT-CCCGGCATTTATGTGCTT
1 CTGTTTCCCCAGCACTTATGTGCTT
*
268018 CTGTTTCCCCAGCACTTATGTTCTT
1 CTGTTTCCCCAGCACTTATGTGCTT
268043 CTGTT
1 CTGTT
268048 AAGTACTTCA
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
24 6 0.23
25 20 0.77
ACGTcount: A:0.09, C:0.28, G:0.17, T:0.46
Consensus pattern (25 bp):
CTGTTTCCCCAGCACTTATGTGCTT
Found at i:272107 original size:20 final size:19
Alignment explanation
Indices: 272066--272109 Score: 52
Period size: 19 Copynumber: 2.3 Consensus size: 19
272056 CTTTTAATTA
* *
272066 TTTATAATTTTCAATAACT
1 TTTATAATTTTCAAAAAAT
*
272085 TTTATAATTTTTAAAAATAT
1 TTTATAATTTTCAAAAA-AT
272105 TTTAT
1 TTTAT
272110 GATACATTCA
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
19 15 0.71
20 6 0.29
ACGTcount: A:0.39, C:0.05, G:0.00, T:0.57
Consensus pattern (19 bp):
TTTATAATTTTCAAAAAAT
Found at i:283032 original size:59 final size:60
Alignment explanation
Indices: 282919--283040 Score: 228
Period size: 59 Copynumber: 2.0 Consensus size: 60
282909 AATATTTTGC
*
282919 TTTCTTTCTTCCCTTCCTTCTTAATTTTTTTTTTCATTCTTTTCATAATTATTAAGATAA
1 TTTCTTTCTTCCCTTCCTTCTTAATTTTTTTTTTCATTCTTTTCATAATTATTAACATAA
282979 TTTCTTTCTTCCCTTCCTTCTT-ATTTTTTTTTTCATTCTTTTCATAATTATTAACATAA
1 TTTCTTTCTTCCCTTCCTTCTTAATTTTTTTTTTCATTCTTTTCATAATTATTAACATAA
283038 TTT
1 TTT
283041 TGTCCACAAG
Statistics
Matches: 61, Mismatches: 1, Indels: 1
0.97 0.02 0.02
Matches are distributed among these distances:
59 39 0.64
60 22 0.36
ACGTcount: A:0.19, C:0.19, G:0.01, T:0.61
Consensus pattern (60 bp):
TTTCTTTCTTCCCTTCCTTCTTAATTTTTTTTTTCATTCTTTTCATAATTATTAACATAA
Found at i:288908 original size:39 final size:39
Alignment explanation
Indices: 288865--288939 Score: 150
Period size: 39 Copynumber: 1.9 Consensus size: 39
288855 ACAACAGGCG
288865 TGACCCAATTGTCATGCAAAGAAGGTATCAGTGCATGCA
1 TGACCCAATTGTCATGCAAAGAAGGTATCAGTGCATGCA
288904 TGACCCAATTGTCATGCAAAGAAGGTATCAGTGCAT
1 TGACCCAATTGTCATGCAAAGAAGGTATCAGTGCAT
288940 TATAAAAGTA
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
39 36 1.00
ACGTcount: A:0.33, C:0.20, G:0.23, T:0.24
Consensus pattern (39 bp):
TGACCCAATTGTCATGCAAAGAAGGTATCAGTGCATGCA
Found at i:289037 original size:32 final size:31
Alignment explanation
Indices: 288982--289042 Score: 79
Period size: 32 Copynumber: 1.9 Consensus size: 31
288972 AATAGTTAAT
*
288982 AATATTAATTATTTAAATTAATAAAAATAAA
1 AATATTAATTATTTAAATAAATAAAAATAAA
*
289013 AATATTAAATTATATTAAA-AAATAATAATA
1 AATATT-AATTAT-TTAAATAAATAAAAATA
289043 TATATATATA
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
31 6 0.23
32 15 0.58
33 5 0.19
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (31 bp):
AATATTAATTATTTAAATAAATAAAAATAAA
Found at i:289045 original size:2 final size:2
Alignment explanation
Indices: 289040--289067 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
289030 AAAAATAATA
289040 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
289068 TAAATATCAA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:289677 original size:2 final size:2
Alignment explanation
Indices: 289670--289694 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
289660 GATTTATCAA
289670 AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT A
289695 ATCAAAATTT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:295361 original size:30 final size:30
Alignment explanation
Indices: 295274--295362 Score: 90
Period size: 31 Copynumber: 2.9 Consensus size: 30
295264 GATTTATCTC
* * *
295274 AACTTTAA-TTTAGTGCAATTATATACATGG
1 AACTTTAATTTTA-TTCAATTGTATACATGA
* * *
295304 AACTTTGATTGTGATTCAAATGTATACATGA
1 AACTTTAATT-TTATTCAATTGTATACATGA
*
295335 AACTTTAATTTTATTCAATTGCATACAT
1 AACTTTAATTTTATTCAATTGTATACAT
295363 TTAAAGGAAT
Statistics
Matches: 47, Mismatches: 10, Indels: 4
0.77 0.16 0.07
Matches are distributed among these distances:
30 22 0.47
31 23 0.49
32 2 0.04
ACGTcount: A:0.36, C:0.11, G:0.11, T:0.42
Consensus pattern (30 bp):
AACTTTAATTTTATTCAATTGTATACATGA
Found at i:299987 original size:35 final size:35
Alignment explanation
Indices: 299941--300011 Score: 133
Period size: 35 Copynumber: 2.0 Consensus size: 35
299931 ACTGATGAGG
299941 CCACAAGAATGTGCCCATTGCATATGCTCTCTTCT
1 CCACAAGAATGTGCCCATTGCATATGCTCTCTTCT
*
299976 CCACAAGAATGTGCCCGTTGCATATGCTCTCTTCT
1 CCACAAGAATGTGCCCATTGCATATGCTCTCTTCT
300011 C
1 C
300012 ATCAAGGCTA
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
35 35 1.00
ACGTcount: A:0.21, C:0.32, G:0.15, T:0.31
Consensus pattern (35 bp):
CCACAAGAATGTGCCCATTGCATATGCTCTCTTCT
Found at i:302300 original size:14 final size:14
Alignment explanation
Indices: 302261--302301 Score: 50
Period size: 14 Copynumber: 2.9 Consensus size: 14
302251 AATATATCAA
302261 ATACACTTAAAAAT
1 ATACACTTAAAAAT
302275 ATTTACAC--AAAAAT
1 A--TACACTTAAAAAT
302289 ATACACTTAAAAA
1 ATACACTTAAAAA
302302 CATTAAAACA
Statistics
Matches: 23, Mismatches: 0, Indels: 8
0.74 0.00 0.26
Matches are distributed among these distances:
12 5 0.22
14 13 0.57
16 5 0.22
ACGTcount: A:0.59, C:0.15, G:0.00, T:0.27
Consensus pattern (14 bp):
ATACACTTAAAAAT
Found at i:302548 original size:18 final size:20
Alignment explanation
Indices: 302511--302550 Score: 57
Period size: 20 Copynumber: 2.1 Consensus size: 20
302501 CAACAAAAAC
302511 AACAACAAAAATAGCACCAG
1 AACAACAAAAATAGCACCAG
*
302531 AACAACAGAAA-A-CACCAG
1 AACAACAAAAATAGCACCAG
302549 AA
1 AA
302551 ATAGCAAGAA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
18 8 0.42
19 1 0.05
20 10 0.53
ACGTcount: A:0.62, C:0.25, G:0.10, T:0.03
Consensus pattern (20 bp):
AACAACAAAAATAGCACCAG
Found at i:303035 original size:18 final size:18
Alignment explanation
Indices: 303001--303035 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
302991 TATTATTATT
*
303001 ATCATCATCATCGTGGTC
1 ATCATCATCATCATGGTC
*
303019 ATCATCATTATCATGGT
1 ATCATCATCATCATGGT
303036 AAATGACATT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.26, C:0.23, G:0.14, T:0.37
Consensus pattern (18 bp):
ATCATCATCATCATGGTC
Found at i:304328 original size:21 final size:21
Alignment explanation
Indices: 304290--304329 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
304280 TTAGAAATTA
*
304290 ATTTAATTTATTTGAATTATT
1 ATTTAATTTATGTGAATTATT
304311 ATTTAATTTAATGT-AATTA
1 ATTTAATTT-ATGTGAATTA
304330 AATAATTTAC
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
21 14 0.82
22 3 0.18
ACGTcount: A:0.38, C:0.00, G:0.05, T:0.57
Consensus pattern (21 bp):
ATTTAATTTATGTGAATTATT
Found at i:320409 original size:31 final size:31
Alignment explanation
Indices: 320348--320414 Score: 89
Period size: 31 Copynumber: 2.2 Consensus size: 31
320338 TAGTTGCTGG
* * **
320348 GGAGCTCGCAACTATCACATCTTGCCAGCAT
1 GGAGCTCGCAAATATCACAGCTCACCAGCAT
*
320379 GGAGCTCGCAAATATCACAGCTCACTAGCAT
1 GGAGCTCGCAAATATCACAGCTCACCAGCAT
320410 GGAGC
1 GGAGC
320415 ATGCAGCTAT
Statistics
Matches: 31, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.19
Consensus pattern (31 bp):
GGAGCTCGCAAATATCACAGCTCACCAGCAT
Found at i:321096 original size:30 final size:30
Alignment explanation
Indices: 321040--321098 Score: 75
Period size: 30 Copynumber: 2.0 Consensus size: 30
321030 ATTTTACACC
*
321040 TCTTTAGTTTAATTTATCTTCGTTTTTATT
1 TCTTTAGTTTAATTTATCTTCATTTTTATT
* *
321070 TCTTTAG-TTATTTCTATTTTCATTTTTAT
1 TCTTTAGTTTAATT-TATCTTCATTTTTAT
321099 AGAAACGAAA
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
29 5 0.20
30 20 0.80
ACGTcount: A:0.17, C:0.10, G:0.05, T:0.68
Consensus pattern (30 bp):
TCTTTAGTTTAATTTATCTTCATTTTTATT
Found at i:322953 original size:17 final size:17
Alignment explanation
Indices: 322933--323015 Score: 87
Period size: 17 Copynumber: 4.7 Consensus size: 17
322923 TTCATTTTGG
322933 GTTTAAATTTAATTTAA
1 GTTTAAATTTAATTTAA
** *
322950 GTTTAAACTTTCCTTTTCA
1 GTTTAAA-TTT-AATTTAA
*
322969 GTTTAAATTTAAATTAA
1 GTTTAAATTTAATTTAA
322986 GTTTAAATTTAATTTGAA
1 GTTTAAATTTAATTT-AA
323004 -TTTAAAATTTAA
1 GTTT-AAATTTAA
323016 AAGTCTAGTC
Statistics
Matches: 54, Mismatches: 8, Indels: 7
0.78 0.12 0.10
Matches are distributed among these distances:
17 27 0.50
18 16 0.30
19 11 0.20
ACGTcount: A:0.39, C:0.05, G:0.06, T:0.51
Consensus pattern (17 bp):
GTTTAAATTTAATTTAA
Found at i:322979 original size:6 final size:6
Alignment explanation
Indices: 322970--323016 Score: 53
Period size: 6 Copynumber: 8.0 Consensus size: 6
322960 TCCTTTTCAG
* *
322970 TTTAAA TTTAAA -TTAAG TTTAAA TTT-AA TTTGAA TTTAAAA TTTAAA
1 TTTAAA TTTAAA TTTAAA TTTAAA TTTAAA TTTAAA TTT-AAA TTTAAA
323017 AGTCTAGTCA
Statistics
Matches: 35, Mismatches: 3, Indels: 6
0.80 0.07 0.14
Matches are distributed among these distances:
5 9 0.26
6 21 0.60
7 5 0.14
ACGTcount: A:0.47, C:0.00, G:0.04, T:0.49
Consensus pattern (6 bp):
TTTAAA
Found at i:323674 original size:3 final size:3
Alignment explanation
Indices: 323666--323742 Score: 52
Period size: 3 Copynumber: 26.0 Consensus size: 3
323656 AAAATAGCAT
* * * * * *
323666 TAA TAA TAA TAG TAT TAA TAA TAA T-A TCTA TAA TAA TTA TAA CAT
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA T-AA TAA TAA TAA TAA TAA
*
323711 TAA TAA TAT TAA TAA TAAA TAA -AA TAA -AA TAA
1 TAA TAA TAA TAA TAA T-AA TAA TAA TAA TAA TAA
323743 AATCGAAAGG
Statistics
Matches: 57, Mismatches: 12, Indels: 10
0.72 0.15 0.13
Matches are distributed among these distances:
2 6 0.11
3 46 0.81
4 5 0.09
ACGTcount: A:0.60, C:0.03, G:0.01, T:0.36
Consensus pattern (3 bp):
TAA
Found at i:323676 original size:15 final size:15
Alignment explanation
Indices: 323658--323718 Score: 70
Period size: 15 Copynumber: 4.1 Consensus size: 15
323648 TATTACAAAA
323658 AATAGCATTAATAAT
1 AATAGCATTAATAAT
*
323673 AATAGTATTAATAAT
1 AATAGCATTAATAAT
*
323688 AATATC-TATAATAAT
1 AATAGCAT-TAATAAT
* *
323703 TATAACATTAATAAT
1 AATAGCATTAATAAT
323718 A
1 A
323719 TTAATAATAA
Statistics
Matches: 38, Mismatches: 6, Indels: 4
0.79 0.12 0.08
Matches are distributed among these distances:
14 1 0.03
15 36 0.95
16 1 0.03
ACGTcount: A:0.54, C:0.05, G:0.03, T:0.38
Consensus pattern (15 bp):
AATAGCATTAATAAT
Found at i:323726 original size:12 final size:12
Alignment explanation
Indices: 323669--323728 Score: 59
Period size: 12 Copynumber: 4.8 Consensus size: 12
323659 ATAGCATTAA
*
323669 TAATAATAGTAT
1 TAATAATAATAT
323681 TAATAATAATAT
1 TAATAATAATAT
323693 CT-ATAATAATTAT
1 -TAATAATAA-TAT
*
323706 AACATTAATAATAT
1 TA-A-TAATAATAT
323720 TAATAATAA
1 TAATAATAA
323729 ATAAAATAAA
Statistics
Matches: 40, Mismatches: 3, Indels: 10
0.75 0.06 0.19
Matches are distributed among these distances:
12 24 0.60
13 5 0.12
14 5 0.12
15 6 0.15
ACGTcount: A:0.55, C:0.03, G:0.02, T:0.40
Consensus pattern (12 bp):
TAATAATAATAT
Found at i:324862 original size:29 final size:29
Alignment explanation
Indices: 324824--325074 Score: 164
Period size: 29 Copynumber: 8.7 Consensus size: 29
324814 TCCTTGAACT
*
324824 TTCC-AAAATTCCATTTTTACATCGAAAC
1 TTCCAAAAATTCCATTTTTACCTCGAAAC
* * *
324852 TTCTAAAAATTACATTTTTACCCCCG-AAC
1 TTCCAAAAATTCCATTTTTA-CCTCGAAAC
* *
324881 TTCCAAAAATTTCATTTTTAACCTCGATAC
1 TTCCAAAAATTCCATTTTT-ACCTCGAAAC
**
324911 TTCCAAAAATTATATTTTTACCCTCG-AAC
1 TTCCAAAAATTCCATTTTTA-CCTCGAAAC
* * *
324940 CTCCAAAAATTCTATTTTGACCTCGAAAC
1 TTCCAAAAATTCCATTTTTACCTCGAAAC
** * *
324969 TTTTAAAAATTACCA-TTTTACCCCTG-GA-
1 TTCCAAAAATT-CCATTTTTACCTC-GAAAC
**
324997 TGTCCAAAAATTCCATTTTTTATCC-CG-ATT
1 T-TCCAAAAATTCCA-TTTTTA-CCTCGAAAC
*
325027 TTCCTAAAAATTACCA-TTTTACCTCG-GA-
1 TTCC-AAAAATT-CCATTTTTACCTCGAAAC
325055 TGTCCAAAAATTCCATTTTT
1 T-TCCAAAAATTCCATTTTT
325075 GATCCCGGCT
Statistics
Matches: 178, Mismatches: 27, Indels: 36
0.74 0.11 0.15
Matches are distributed among these distances:
27 3 0.02
28 26 0.15
29 99 0.56
30 45 0.25
31 5 0.03
ACGTcount: A:0.33, C:0.24, G:0.05, T:0.38
Consensus pattern (29 bp):
TTCCAAAAATTCCATTTTTACCTCGAAAC
Found at i:324930 original size:59 final size:58
Alignment explanation
Indices: 324819--325074 Score: 231
Period size: 58 Copynumber: 4.4 Consensus size: 58
324809 AGAGTTCCTT
*
324819 GAACTTTCC-AAAATTCCATTTTTACATCGAAACTTCTAAAAATTACATTTTTACCCCC
1 GAAC-TTCCAAAAATTCCATTTTTACCTCGAAACTTCTAAAAATTACATTTTTACCCCC
* * * * *
324877 GAACTTCCAAAAATTTCATTTTTAACCTCGATACTTCCAAAAATTATATTTTTACCCTC
1 GAACTTCCAAAAATTCCATTTTT-ACCTCGAAACTTCTAAAAATTACATTTTTACCCCC
* * * * *
324936 GAACCTCCAAAAATTCTATTTTGACCTCGAAACTTTTAAAAATTACCA-TTTTACCCCT
1 GAACTTCCAAAAATTCCATTTTTACCTCGAAACTTCTAAAAATTA-CATTTTTACCCCC
* ** *
324994 GGA-TGTCCAAAAATTCCATTTTTTATCC-CG-ATTTTCCTAAAAATTACCA-TTTTA-CCTC
1 GAACT-TCCAAAAATTCCA-TTTTTA-CCTCGAAACTT-CTAAAAATTA-CATTTTTACCCCC
*
325052 GGA-TGTCCAAAAATTCCATTTTT
1 GAACT-TCCAAAAATTCCATTTTT
325075 GATCCCGGCT
Statistics
Matches: 166, Mismatches: 25, Indels: 15
0.81 0.12 0.07
Matches are distributed among these distances:
57 9 0.05
58 81 0.49
59 74 0.45
60 2 0.01
ACGTcount: A:0.33, C:0.24, G:0.05, T:0.38
Consensus pattern (58 bp):
GAACTTCCAAAAATTCCATTTTTACCTCGAAACTTCTAAAAATTACATTTTTACCCCC
Found at i:325090 original size:29 final size:28
Alignment explanation
Indices: 324973--325093 Score: 97
Period size: 29 Copynumber: 4.2 Consensus size: 28
324963 CGAAACTTTT
* *
324973 AAAAATTACCA-TTTTACCCCTGGATGTCC
1 AAAAATT-CCATTTTTATCCC-GGATATCC
*
325002 AAAAATTCCATTTTTTATCCC-GATTTTCC
1 AAAAATTCCA-TTTTTATCCCGGA-TATCC
*
325031 TAAAAATTACCA-TTTTA-CCTCGGATGTCC
1 -AAAAATT-CCATTTTTATCC-CGGATATCC
*
325060 AAAAATTCCATTTTTGATCCCGGCTATCC
1 AAAAATTCCATTTTT-ATCCCGGATATCC
325089 AAAAA
1 AAAAA
325094 GTTAATTTTC
Statistics
Matches: 77, Mismatches: 5, Indels: 20
0.75 0.05 0.20
Matches are distributed among these distances:
27 3 0.04
28 18 0.23
29 34 0.44
30 19 0.25
31 3 0.04
ACGTcount: A:0.32, C:0.25, G:0.08, T:0.35
Consensus pattern (28 bp):
AAAAATTCCATTTTTATCCCGGATATCC
Found at i:335672 original size:115 final size:115
Alignment explanation
Indices: 335461--335672 Score: 289
Period size: 115 Copynumber: 1.8 Consensus size: 115
335451 CCAATGCGAA
* * * * *
335461 CAAATCTTTGAACCCCAGCTTCCTGATGAGATACTGAGAAGCAGGTCAAAGTAATAAAATGGTTA
1 CAAATCTTCGAACCCCAGCTTCCTGATGAGATACTGAGAAGCAGGGCAAAGCAATAAAACGGTCA
* *
335526 GCTTCCTGATGAGATACTGAGAAGTATACCAACTCAAGGCTCGATGTGAG
66 GCTTCCTGATGAGACACTGAGAAGTAGACCAACTCAAGGCTCGATGTGAG
* * * * **
335576 CAAATCTTCGAATCCCAGCTTCCTGATGAGATACTGTGAAGTAGGGCAAAGCAGTAAGGCGGTCA
1 CAAATCTTCGAACCCCAGCTTCCTGATGAGATACTGAGAAGCAGGGCAAAGCAATAAAACGGTCA
* *
335641 GCTTCCTGATGAGACATTGAGAAGTGGACCAA
66 GCTTCCTGATGAGACACTGAGAAGTAGACCAA
335673 ATTCATCTTC
Statistics
Matches: 82, Mismatches: 15, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
115 82 1.00
ACGTcount: A:0.33, C:0.20, G:0.25, T:0.23
Consensus pattern (115 bp):
CAAATCTTCGAACCCCAGCTTCCTGATGAGATACTGAGAAGCAGGGCAAAGCAATAAAACGGTCA
GCTTCCTGATGAGACACTGAGAAGTAGACCAACTCAAGGCTCGATGTGAG
Found at i:335801 original size:194 final size:194
Alignment explanation
Indices: 335527--336537 Score: 1124
Period size: 194 Copynumber: 5.1 Consensus size: 194
335517 AAATGGTTAG
* * *
335527 CTTCCTGATGAGATACTGAGAAGTATACCAACTCAAGGCTCGATGTGAGCAAATCTTCGAATCCC
1 CTTCCTGATGAGATACAGAGAAGTATACCAACTCAATG--CGA----A-CAAATCTTCGAACCCC
* * * * *** * *
335592 AGCTTCCTGATGAGATACTGTGAAGTAGGGCAAAGCAGTAAGGCGGTCAGCTTCCTGATGAGACA
59 AGCTTCCTGATGAGATACTGAGAAGCAGGGCGAAGCAATAAAAAGGTTAGCTTCCTGATGAGATA
* * * * *
335657 TTGAGAAGTGGACCAAATTCATCTTCCTGATTATATACAAAGAAGCGGATTGAAACAAGTGAGGC
124 CTGAGAAGTGGACCAAATTCGTCTTCCTGATGAGATACAGAGAAGCGGATTGAAACAAGTGAGGC
335722 GGTCAT
189 GGTCAT
* *
335728 CTTCTTGATGAGATACAGAGAAGTATACCAACTCAATGCGAACAAATCTTCGAACCCCAGCTTCT
1 CTTCCTGATGAGATACAGAGAAGTATACCAACTCAATGCGAACAAATCTTCGAACCCCAGCTTCC
* * * * *
335793 TGATGAGATACTGAGAACCAGGACGAAGCAAT-AAAAGGTTAGTTTCCTAATGAGATACTAAGAA
66 TGATGAGATACTGAGAAGCAGGGCGAAGCAATAAAAAGGTTAGCTTCCTGATGAGATACTGAGAA
* * *
335857 GTTGACCAAATTCGTCTTCCTGATGAGGTACAGAGAAGCGGATTGAAACAAGTAAGGCGGTCAT
131 GTGGACCAAATTCGTCTTCCTGATGAGATACAGAGAAGCGGATTGAAACAAGTGAGGCGGTCAT
* * *
335921 CTTCCTGATGAGATATAGAGAAGAATACCAACTCAGGGCTCGATGCGAGCAAATCTTCGAACCCC
1 CTTCCTGATGAGATACAGAGAAGTATACCAACTCA-------ATGCGAACAAATCTTCGAACCCC
* * * * *
335986 AGCTTCCTGATGAGATACTGAGAAGCAAGTCAAAGCAATAAAATGGTTATCTTCCTGATGAGATA
59 AGCTTCCTGATGAGATACTGAGAAGCAGGGCGAAGCAATAAAAAGGTTAGCTTCCTGATGAGATA
* * * * * * *
336051 CTGAGAAGTGAACCAAATTCATCTTCCTAATAAGATACAGAGAAGCAGATTGAAACAAGCGATGC
124 CTGAGAAGTGGACCAAATTCGTCTTCCTGATGAGATACAGAGAAGCGGATTGAAACAAGTGAGGC
*
336116 GGTCAC
189 GGTCAT
* * * * * *
336122 CTTCTTAATGAGATACTGAGAAGAAGACCAAATCAAACCCACTCTCAATGCAAACAAATTTTCGA
1 CTTCCTGATGAGATAC--AG-AGAAG------T-ATA-CCA-ACTCAATGCGAACAAATCTTCGA
* * *
336187 ACCCCAGCTTCCTAATGAGATACTGAGAAGTAGGGCGAAGCAATAAAAAGGTTAGCTTCCTAATG
54 ACCCCAGCTTCCTGATGAGATACTGAGAAGCAGGGCGAAGCAATAAAAAGGTTAGCTTCCTGATG
* * *
336252 AGATACTGAGAAGTGGATCAAATTCGTCTTCCTGATGAGATACAGAGAAGTGGATTAAAACAAGT
119 AGATACTGAGAAGTGGACCAAATTCGTCTTCCTGATGAGATACAGAGAAGCGGATTGAAACAAGT
*
336317 GAGGCAGTCAT
184 GAGGCGGTCAT
* * * * *
336328 CTTCCTGATGAGATACAAAGAAATATACTAACTTAATGCGAACAAATCTTCGACCCCCAGCTTCC
1 CTTCCTGATGAGATACAGAGAAGTATACCAACTCAATGCGAACAAATCTTCGAACCCCAGCTTCC
* *
336393 TGATGAGATACTGAGAAGCAGGGCGAAGCAATAAAAAGGTTAACTTCCTGATGAGATACGGAGAA
66 TGATGAGATACTGAGAAGCAGGGCGAAGCAATAAAAAGGTTAGCTTCCTGATGAGATACTGAGAA
* * * * * ** * *
336458 GTGAACCAAATCCGTCTTCCTGATGAAACACAGAGAAGTGGATCAAAACAAGTGATGCGGACAT
131 GTGGACCAAATTCGTCTTCCTGATGAGATACAGAGAAGCGGATTGAAACAAGTGAGGCGGTCAT
*
336522 CTTCTTGATGAGATAC
1 CTTCCTGATGAGATAC
336538 TAAGAAGAAG
Statistics
Matches: 683, Mismatches: 107, Indels: 47
0.82 0.13 0.06
Matches are distributed among these distances:
193 112 0.16
194 207 0.30
195 3 0.00
196 2 0.00
197 1 0.00
199 3 0.00
200 56 0.08
201 128 0.19
203 6 0.01
204 6 0.01
206 150 0.22
211 2 0.00
212 3 0.00
213 4 0.01
ACGTcount: A:0.36, C:0.19, G:0.22, T:0.23
Consensus pattern (194 bp):
CTTCCTGATGAGATACAGAGAAGTATACCAACTCAATGCGAACAAATCTTCGAACCCCAGCTTCC
TGATGAGATACTGAGAAGCAGGGCGAAGCAATAAAAAGGTTAGCTTCCTGATGAGATACTGAGAA
GTGGACCAAATTCGTCTTCCTGATGAGATACAGAGAAGCGGATTGAAACAAGTGAGGCGGTCAT
Found at i:336468 original size:400 final size:395
Alignment explanation
Indices: 335576--336557 Score: 1219
Period size: 400 Copynumber: 2.5 Consensus size: 395
335566 TCGATGTGAG
* * * * *** *
335576 CAAATCTTCGAATCCCAGCTTCCTGATGAGATACTGTGAAGTAGGGCAAAGCAGTAAGGCGGTCA
1 CAAATCTTCGAACCCCAGCTTCCTGATGAGATACTGAGAAGCAGGGCAAAGCAATAAAAAGGTTA
* * * * * *
335641 GCTTCCTGATGAGACATTGAGAAGTGGACCAAATTCATCTTCCTGATTATATACAAAGAAGCGGA
66 ACTTCCTGATGAGATACTGAGAAGTGAACCAAATTCATCTTCCTGA-TAAATACAGAGAAGCGGA
* *
335706 TTGAAACAAGTGAGGCGGTCATCTTCTTGATGAGATAC-AG-AGAAG----T-ATACCAACTCAA
130 TTGAAACAAGTGATGCGGTCATCTTCTTGATGAGATACTAGAAGAAGCCAATCAAACCAACTCAA
* * *
335764 TGCGAACAAATCTTCGAACCCCAGCTTCTTGATGAGATACTGAGAACCAGGACGAAGCAATAAAA
195 TGCAAACAAATCTTCGAACCCCAGCTTCCTAATGAGATACTGAGAACCAGGACGAAGCAATAAAA
* * *
335829 GGTTAGTTTCCTAATGAGATACTAAGAAGTTGACCAAATTCGTCTTCCTGATGAGGTACAGAGAA
260 GGTTAGCTTCCTAATGAGATACTAAGAAGTGGACCAAATTCGTCTTCCTGATGAGATACAGAGAA
* * * *
335894 GCGGATTGAAACAAGTAAGGCGGTCATCTTCCTGATGAGATATAGAGAAGAATACCAACTCAGGG
325 GCGGATTAAAACAAGTAAGGCAGTCATCTTCCTGATGAGATACAAAGAAGAATACCAACT----G
* *
335959 CTCGATGCGAG
386 -TCAATGCGAA
* * *
335970 CAAATCTTCGAACCCCAGCTTCCTGATGAGATACTGAGAAGCAAGTCAAAGCAATAAAATGGTTA
1 CAAATCTTCGAACCCCAGCTTCCTGATGAGATACTGAGAAGCAGGGCAAAGCAATAAAAAGGTTA
* * *
336035 TCTTCCTGATGAGATACTGAGAAGTGAACCAAATTCATCTTCCTAATAAGATACAGAGAAGCAGA
66 ACTTCCTGATGAGATACTGAGAAGTGAACCAAATTCATCTTCCTGATAA-ATACAGAGAAGCGGA
* * * *
336100 TTGAAACAAGCGATGCGGTCACCTTCTTAATGAGATACTGAGAAGAAGACCAAATCAAACCCACT
130 TTGAAACAAGTGATGCGGTCATCTTCTTGATGAGATACT-AGAAGAAG-CC-AATCAAA-CCA-A
* ** *
336165 CTCAATGCAAACAAATTTTCGAACCCCAGCTTCCTAATGAGATACTGAGAAGTAGGGCGAAGCAA
190 CTCAATGCAAACAAATCTTCGAACCCCAGCTTCCTAATGAGATACTGAGAACCAGGACGAAGCAA
* *
336230 TAAAAAGGTTAGCTTCCTAATGAGATACTGAGAAGTGGATCAAATTCGTCTTCCTGATGAGATAC
255 T-AAAAGGTTAGCTTCCTAATGAGATACTAAGAAGTGGACCAAATTCGTCTTCCTGATGAGATAC
* * *
336295 AGAGAAGTGGATTAAAACAAGTGAGGCAGTCATCTTCCTGATGAGATACAAAGAA-ATATACTAA
319 AGAGAAGCGGATTAAAACAAGTAAGGCAGTCATCTTCCTGATGAGATACAAAGAAGA-ATACCAA
336359 CT-T-AATGCGAA
383 CTGTCAATGCGAA
* *
336370 CAAATCTTCGACCCCCAGCTTCCTGATGAGATACTGAGAAGCAGGGCGAAGCAATAAAAAGGTTA
1 CAAATCTTCGAACCCCAGCTTCCTGATGAGATACTGAGAAGCAGGGCAAAGCAATAAAAAGGTTA
* * * * *
336435 ACTTCCTGATGAGATACGGAGAAGTGAACCAAATCCGTCTTCCTGATGAAACACAGAGAAGTGGA
66 ACTTCCTGATGAGATACTGAGAAGTGAACCAAATTCATCTTCCTGAT-AAATACAGAGAAGCGGA
** *
336500 TCAAAACAAGTGATGCGGACATCTTCTTGATGAGATACTAAGAAGAAGGCCAAGTCAA
130 TTGAAACAAGTGATGCGGTCATCTTCTTGATGAGATACT-AGAAGAA-GCCAA-TCAA
336558 TAGAACCATA
Statistics
Matches: 505, Mismatches: 65, Indels: 30
0.84 0.11 0.05
Matches are distributed among these distances:
393 2 0.00
394 143 0.28
396 2 0.00
397 5 0.01
399 2 0.00
400 166 0.33
401 4 0.01
403 1 0.00
404 2 0.00
405 3 0.01
406 60 0.12
407 115 0.23
ACGTcount: A:0.36, C:0.19, G:0.22, T:0.22
Consensus pattern (395 bp):
CAAATCTTCGAACCCCAGCTTCCTGATGAGATACTGAGAAGCAGGGCAAAGCAATAAAAAGGTTA
ACTTCCTGATGAGATACTGAGAAGTGAACCAAATTCATCTTCCTGATAAATACAGAGAAGCGGAT
TGAAACAAGTGATGCGGTCATCTTCTTGATGAGATACTAGAAGAAGCCAATCAAACCAACTCAAT
GCAAACAAATCTTCGAACCCCAGCTTCCTAATGAGATACTGAGAACCAGGACGAAGCAATAAAAG
GTTAGCTTCCTAATGAGATACTAAGAAGTGGACCAAATTCGTCTTCCTGATGAGATACAGAGAAG
CGGATTAAAACAAGTAAGGCAGTCATCTTCCTGATGAGATACAAAGAAGAATACCAACTGTCAAT
GCGAA
Found at i:336939 original size:17 final size:17
Alignment explanation
Indices: 336919--336971 Score: 61
Period size: 17 Copynumber: 3.1 Consensus size: 17
336909 TTTTAAGTTC
*
336919 ATTTTGGGTTTAAATTT
1 ATTTTGAGTTTAAATTT
*
336936 ATTTTAAGTTTAAATTT
1 ATTTTGAGTTTAAATTT
* *
336953 AATTTGAATTTAAAATTT
1 ATTTTGAGTTT-AAATTT
336971 A
1 A
336972 AAAGTCTAGT
Statistics
Matches: 30, Mismatches: 5, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
17 23 0.77
18 7 0.23
ACGTcount: A:0.36, C:0.00, G:0.09, T:0.55
Consensus pattern (17 bp):
ATTTTGAGTTTAAATTT
Found at i:336968 original size:18 final size:18
Alignment explanation
Indices: 336926--336972 Score: 62
Period size: 18 Copynumber: 2.7 Consensus size: 18
336916 TTCATTTTGG
*
336926 GTTTAAATTT-ATTTTAA
1 GTTTAAATTTAATTTGAA
336943 GTTTAAATTTAATTTGAA
1 GTTTAAATTTAATTTGAA
336961 -TTTAAAATTTAA
1 GTTT-AAATTTAA
336973 AAGTCTAGTC
Statistics
Matches: 27, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
17 13 0.48
18 14 0.52
ACGTcount: A:0.40, C:0.00, G:0.06, T:0.53
Consensus pattern (18 bp):
GTTTAAATTTAATTTGAA
Found at i:337634 original size:15 final size:15
Alignment explanation
Indices: 337616--337676 Score: 61
Period size: 15 Copynumber: 4.1 Consensus size: 15
337606 TATTACAATA
337616 AATAACATTAATAAT
1 AATAACATTAATAAT
** *
337631 AATAGTATTAATAGT
1 AATAACATTAATAAT
*
337646 AATATC-TATAATAAT
1 AATAACAT-TAATAAT
*
337661 GATAACATTAATAAT
1 AATAACATTAATAAT
337676 A
1 A
337677 TTAATAATAA
Statistics
Matches: 35, Mismatches: 9, Indels: 4
0.73 0.19 0.08
Matches are distributed among these distances:
14 1 0.03
15 33 0.94
16 1 0.03
ACGTcount: A:0.54, C:0.05, G:0.05, T:0.36
Consensus pattern (15 bp):
AATAACATTAATAAT
Found at i:338824 original size:29 final size:30
Alignment explanation
Indices: 338792--338945 Score: 126
Period size: 29 Copynumber: 5.2 Consensus size: 30
338782 ACAGGTCCTT
*
338792 AAACTTTTC-AAAATTCCATTTTTGA-CTCC
1 AAACTTTCCAAAAATTCCATTTTT-ACCTCC
* *
338821 AAACTTTTCAAAAATT--ATATTTTACCCCC
1 AAACTTTCCAAAAATTCCAT-TTTTACCTCC
* * *
338850 GAAC-TTCCCAAAATTCCATTTTTTACCTCG
1 AAACTTTCCAAAAATTCCA-TTTTTACCTCC
*
338880 AAAC-TTCCAAAAATTACATTTTTACC-CTC
1 AAACTTTCCAAAAATTCCATTTTTACCTC-C
* *
338909 GAAC-TTCCAAAAATTCCATTTTTGACCTCG
1 AAACTTTCCAAAAATTCCATTTTT-ACCTCC
338939 AAACTTT
1 AAACTTT
338946 TGAAAATTAT
Statistics
Matches: 101, Mismatches: 14, Indels: 18
0.76 0.11 0.14
Matches are distributed among these distances:
28 13 0.13
29 48 0.48
30 36 0.36
31 4 0.04
ACGTcount: A:0.33, C:0.26, G:0.04, T:0.37
Consensus pattern (30 bp):
AAACTTTCCAAAAATTCCATTTTTACCTCC
Found at i:338876 original size:30 final size:30
Alignment explanation
Indices: 338801--338996 Score: 158
Period size: 30 Copynumber: 6.7 Consensus size: 30
338791 TAAACTTTTC
* * * *
338801 AAAATTCCATTTTTGACTC-CAAACTTTTCA
1 AAAATTCCATTTTTTACCCTCGAAC-TTCCA
* * *
338831 AAAATT--ATATTTTACCCCCGAACTTCCC
1 AAAATTCCATTTTTTACCCTCGAACTTCCA
338859 AAAATTCCATTTTTTA-CCTCGAAACTTCCA
1 AAAATTCCATTTTTTACCCTCG-AACTTCCA
*
338889 AAAATTACA-TTTTTACCCTCGAACTTCCA
1 AAAATTCCATTTTTTACCCTCGAACTTCCA
* ***
338918 AAAATTCCATTTTTGA-CCTCGAAACTTTTG
1 AAAATTCCATTTTTTACCCTCG-AACTTCCA
* *
338948 AAAATT--ATATTTTTACCCTCGAACCTCAA
1 AAAATTCCAT-TTTTTACCCTCGAACTTCCA
338977 AAAATTCC-TTTTTTAACCCT
1 AAAATTCCATTTTTT-ACCCT
338997 AAAACTTTCG
Statistics
Matches: 134, Mismatches: 20, Indels: 24
0.75 0.11 0.13
Matches are distributed among these distances:
28 19 0.14
29 55 0.41
30 60 0.45
ACGTcount: A:0.33, C:0.26, G:0.04, T:0.37
Consensus pattern (30 bp):
AAAATTCCATTTTTTACCCTCGAACTTCCA
Found at i:338906 original size:59 final size:59
Alignment explanation
Indices: 338801--339057 Score: 265
Period size: 59 Copynumber: 4.4 Consensus size: 59
338791 TAAACTTTTC
* * *
338801 AAAATTCCATTTTTGA-CTCCAAACTTTTCAAAAATTATA-TTTTACCCCCGAACTTCCC
1 AAAATTCCATTTTTGACCTCGAAAC-TTTCAAAAATTATATTTTTACCCTCGAACTTCCA
* * *
338859 AAAATTCCATTTTTTACCTCGAAACTTCCAAAAATTACATTTTTACCCTCGAACTTCCA
1 AAAATTCCATTTTTGACCTCGAAACTTTCAAAAATTATATTTTTACCCTCGAACTTCCA
** * *
338918 AAAATTCCATTTTTGACCTCGAAACTTTTGAAAATTATATTTTTACCCTCGAACCTCAA
1 AAAATTCCATTTTTGACCTCGAAACTTTCAAAAATTATATTTTTACCCTCGAACTTCCA
* * * * * * *
338977 AAAATTCCTTTTTTAACC-CTAAAACTTTCGATAATTACCA-TTTTACCC-CAGGA-TGTCCA
1 AAAATTCCATTTTTGACCTC-GAAACTTTCAAAAATTA-TATTTTTACCCTC-GAACT-TCCA
*
339036 AAAATTCCATTTTTGATCTCGA
1 AAAATTCCATTTTTGACCTCGA
339058 TTTTCCTAAA
Statistics
Matches: 166, Mismatches: 26, Indels: 13
0.81 0.13 0.06
Matches are distributed among these distances:
58 29 0.17
59 135 0.81
60 2 0.01
ACGTcount: A:0.33, C:0.25, G:0.05, T:0.37
Consensus pattern (59 bp):
AAAATTCCATTTTTGACCTCGAAACTTTCAAAAATTATATTTTTACCCTCGAACTTCCA
Found at i:339013 original size:118 final size:117
Alignment explanation
Indices: 338801--339057 Score: 301
Period size: 118 Copynumber: 2.2 Consensus size: 117
338791 TAAACTTTTC
* * **
338801 AAAATTCCATTTTTGACTCCAAACTTTTCAAAAATTATATTTTACCCCCGAACTTCCCAAAATTC
1 AAAATTCCATTTTTGACTCGAAACTTTTCAAAAATTATATTTTACCCCCGAACCTCAAAAAATTC
*
338866 CATTTTTTACCTCGAAACTTCCAAAAATTA-CATTTTTACCCTC-GAACT-TCCA
66 CATTTTTTACCTCAAAACTTCCAAAAATTACCA-TTTTACCC-CAGAA-TGTCCA
* *
338918 AAAATTCCATTTTTGACCTCGAAACTTTT-GAAAATTATATTTTTACCCTCGAACCTCAAAAAAT
1 AAAATTCCATTTTTGA-CTCGAAACTTTTCAAAAATTATA-TTTTACCCCCGAACCTCAAAAAAT
* * * *
338982 TCC-TTTTTTAACC-CTAAAACTTTCGATAATTACCATTTTACCCCAGGATGTCCA
64 TCCATTTTTT-ACCTC-AAAACTTCCAAAAATTACCATTTTACCCCAGAATGTCCA
339036 AAAATTCCATTTTTGATCTCGA
1 AAAATTCCATTTTTGA-CTCGA
339058 TTTTCCTAAA
Statistics
Matches: 121, Mismatches: 12, Indels: 13
0.83 0.08 0.09
Matches are distributed among these distances:
117 34 0.28
118 85 0.70
119 2 0.02
ACGTcount: A:0.33, C:0.25, G:0.05, T:0.37
Consensus pattern (117 bp):
AAAATTCCATTTTTGACTCGAAACTTTTCAAAAATTATATTTTACCCCCGAACCTCAAAAAATTC
CATTTTTTACCTCAAAACTTCCAAAAATTACCATTTTACCCCAGAATGTCCA
Found at i:339041 original size:29 final size:28
Alignment explanation
Indices: 339009--339100 Score: 89
Period size: 29 Copynumber: 3.1 Consensus size: 28
338999 AACTTTCGAT
339009 AATTACCATTTTACCCCAGGATGTCCAAA
1 AATTACCATTTTACCCC-GGATGTCCAAA
* * *
339038 AATT-CCATTTTTGATCTC-GATTTTCCTAAA
1 AATTACCA-TTTT-ACCCCGGA-TGTCC-AAA
339068 AATTACCATTTTACCTCCGGATGTCCAAA
1 AATTACCATTTTACC-CCGGATGTCCAAA
339097 AATT
1 AATT
339101 CTGTTTTTGA
Statistics
Matches: 50, Mismatches: 6, Indels: 14
0.71 0.09 0.20
Matches are distributed among these distances:
28 5 0.10
29 21 0.42
30 19 0.38
31 5 0.10
ACGTcount: A:0.32, C:0.24, G:0.09, T:0.36
Consensus pattern (28 bp):
AATTACCATTTTACCCCGGATGTCCAAA
Found at i:339072 original size:59 final size:59
Alignment explanation
Indices: 339009--339166 Score: 189
Period size: 59 Copynumber: 2.7 Consensus size: 59
338999 AACTTTCGAT
339009 AATTACCATTTTACC-CCAGGATGTCCAAAAATTCCATTTTTGAT-CTCGATTTTCCTAAA
1 AATTACCATTTTACCACCAGGATGTCCAAAAATTCCATTTTTGATCCT-GATTTT-CTAAA
* ** * *
339068 AATTACCATTTTACCTCC-GGATGTCCAAAAATTCTGTTTTTGATCCTGATTTTTTTAA
1 AATTACCATTTTACCACCAGGATGTCCAAAAATTCCATTTTTGATCCTGATTTTCTAAA
* * **
339126 AGTTACCGTTTTACCACCA-GATGTTTAAAAATTCCATTTTT
1 AATTACCATTTTACCACCAGGATGTCCAAAAATTCCATTTTT
339167 AACCCCGAAC
Statistics
Matches: 85, Mismatches: 11, Indels: 7
0.83 0.11 0.07
Matches are distributed among these distances:
58 36 0.42
59 45 0.53
60 4 0.05
ACGTcount: A:0.28, C:0.21, G:0.09, T:0.41
Consensus pattern (59 bp):
AATTACCATTTTACCACCAGGATGTCCAAAAATTCCATTTTTGATCCTGATTTTCTAAA
Found at i:341852 original size:14 final size:16
Alignment explanation
Indices: 341833--341869 Score: 51
Period size: 16 Copynumber: 2.4 Consensus size: 16
341823 AAGTTAGGGT
*
341833 TTTATA-ATTTT-TAC
1 TTTATATATTTTATAA
341847 TTTATATATTTTATAA
1 TTTATATATTTTATAA
341863 TTTATAT
1 TTTATAT
341870 CATATTAAAA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
14 6 0.30
15 5 0.25
16 9 0.45
ACGTcount: A:0.32, C:0.03, G:0.00, T:0.65
Consensus pattern (16 bp):
TTTATATATTTTATAA
Found at i:343776 original size:14 final size:15
Alignment explanation
Indices: 343750--343788 Score: 50
Period size: 12 Copynumber: 2.9 Consensus size: 15
343740 TTGATTAAAA
343750 AAATTTCTTTTTTAC
1 AAATTTCTTTTTTAC
343765 AAATTT-TTTTTT--
1 AAATTTCTTTTTTAC
343777 AAA-TTCTTTTTT
1 AAATTTCTTTTTT
343789 GATTTGCCTG
Statistics
Matches: 23, Mismatches: 0, Indels: 5
0.82 0.00 0.18
Matches are distributed among these distances:
11 2 0.09
12 9 0.39
14 6 0.26
15 6 0.26
ACGTcount: A:0.26, C:0.08, G:0.00, T:0.67
Consensus pattern (15 bp):
AAATTTCTTTTTTAC
Found at i:345814 original size:56 final size:56
Alignment explanation
Indices: 345752--345864 Score: 190
Period size: 56 Copynumber: 2.0 Consensus size: 56
345742 ATGTTAAAGT
*
345752 AAACCAGAAATTTACTAGTACAGATATATTTACTACTTGGAATGACCAGTTAGACC
1 AAACCAGAAATTTACTAGTACAAATATATTTACTACTTGGAATGACCAGTTAGACC
* * *
345808 AAACCAGAAGTTTACTGGTACAAATATATTTACTACTTGGCATGACCAGTTAGACC
1 AAACCAGAAATTTACTAGTACAAATATATTTACTACTTGGAATGACCAGTTAGACC
345864 A
1 A
345865 TCCTGGATCA
Statistics
Matches: 53, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
56 53 1.00
ACGTcount: A:0.38, C:0.19, G:0.15, T:0.28
Consensus pattern (56 bp):
AAACCAGAAATTTACTAGTACAAATATATTTACTACTTGGAATGACCAGTTAGACC
Found at i:348999 original size:18 final size:18
Alignment explanation
Indices: 348972--349007 Score: 63
Period size: 18 Copynumber: 2.0 Consensus size: 18
348962 ATTGATGTCC
348972 ATCAACATCAAGATAAGG
1 ATCAACATCAAGATAAGG
*
348990 ATCAAGATCAAGATAAGG
1 ATCAACATCAAGATAAGG
349008 TTTGGTATAC
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.50, C:0.14, G:0.19, T:0.17
Consensus pattern (18 bp):
ATCAACATCAAGATAAGG
Found at i:349251 original size:59 final size:59
Alignment explanation
Indices: 349160--349278 Score: 211
Period size: 59 Copynumber: 2.0 Consensus size: 59
349150 CTCTTTGTTA
*
349160 TTTACTCTCTGTCTCTTTATTTTATAACAGTATTTTACATTTAAATAATAATAATTTAT
1 TTTACTCTCTATCTCTTTATTTTATAACAGTATTTTACATTTAAATAATAATAATTTAT
* *
349219 TTTACTTTCTATCTCTTTATTTTATAATAGTATTTTACATTTAAATAATAATAATTTAT
1 TTTACTCTCTATCTCTTTATTTTATAACAGTATTTTACATTTAAATAATAATAATTTAT
349278 T
1 T
349279 ATTGAACCCC
Statistics
Matches: 57, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
59 57 1.00
ACGTcount: A:0.33, C:0.10, G:0.03, T:0.55
Consensus pattern (59 bp):
TTTACTCTCTATCTCTTTATTTTATAACAGTATTTTACATTTAAATAATAATAATTTAT
Found at i:349648 original size:18 final size:19
Alignment explanation
Indices: 349627--349664 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 19
349617 TAATTATAGG
349627 GTAATA-AATTTTTATTTT
1 GTAATAGAATTTTTATTTT
* *
349645 GTAATAGTATTTTTCTTTT
1 GTAATAGAATTTTTATTTT
349664 G
1 G
349665 AAAATATCTT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
18 6 0.35
19 11 0.65
ACGTcount: A:0.26, C:0.03, G:0.11, T:0.61
Consensus pattern (19 bp):
GTAATAGAATTTTTATTTT
Found at i:353019 original size:30 final size:29
Alignment explanation
Indices: 352939--353216 Score: 165
Period size: 30 Copynumber: 9.3 Consensus size: 29
352929 TTTTTTTTTT
* *
352939 AAGTTTAGTGGTTAAAATGTGATTTTTGGGAT
1 AAGTTTAG-GGTTAAAATGT-AATTTT-GGAA
*
352971 AA-TTTAGGGTTCAAAATGTGATTTTAGG-A
1 AAGTTTAGGGTT-AAAATGTAATTTT-GGAA
353000 AAGTTTATGGGTTAAAATGTAATTTTGGAA
1 AAGTTTA-GGGTTAAAATGTAATTTTGGAA
* *
353030 AAGTTTAAGGGCTAAAATATAATTTTGGAA
1 AAGTTT-AGGGTTAAAATGTAATTTTGGAA
* *
353060 AAGTTTAGGGCCTAAAATGTAATTTT-TAA
1 AAGTTTAGGG-TTAAAATGTAATTTTGGAA
* * ** * *
353089 AGAATATAGGGGGCCAAAATGTGATTTTGG-G
1 A-AGTTTA--GGGTTAAAATGTAATTTTGGAA
* * *
353120 AAGTTT-GAAG-TCAAATGCAATTTTGGAA
1 AAGTTTAG-GGTTAAAATGTAATTTTGGAA
* * *
353148 AAGTTTGGGGTCAAAATGTAATTTT-TAGA
1 AAGTTTAGGGTTAAAATGTAATTTTGGA-A
* * * * *
353177 AAGTTTAAGGATCAAAATATGATTTTTGAA
1 AAGTTT-AGGGTTAAAATGTAATTTTGGAA
353207 AAGTTTAGGG
1 AAGTTTAGGG
353217 ATCTCTTGAG
Statistics
Matches: 195, Mismatches: 34, Indels: 37
0.73 0.13 0.14
Matches are distributed among these distances:
27 13 0.07
28 9 0.05
29 33 0.17
30 102 0.52
31 33 0.17
32 5 0.03
ACGTcount: A:0.36, C:0.04, G:0.24, T:0.36
Consensus pattern (29 bp):
AAGTTTAGGGTTAAAATGTAATTTTGGAA
Found at i:353152 original size:28 final size:28
Alignment explanation
Indices: 353103--353182 Score: 72
Period size: 29 Copynumber: 2.8 Consensus size: 28
353093 TATAGGGGGC
** *
353103 CAAAATGTGATTTTGGGAAGTTTGAAGT
1 CAAAATGCAATTTTGGAAAGTTTGAAGT
**
353131 C-AAATGCAATTTTGGAAAAGTTTGGGGT
1 CAAAATGCAATTTTGG-AAAGTTTGAAGT
* *
353159 CAAAATGTAATTTTTAGAAAGTTT
1 CAAAATGCAA-TTTTGGAAAGTTT
353183 AAGGATCAAA
Statistics
Matches: 42, Mismatches: 7, Indels: 5
0.78 0.13 0.09
Matches are distributed among these distances:
27 12 0.29
28 11 0.26
29 14 0.33
30 5 0.12
ACGTcount: A:0.35, C:0.05, G:0.24, T:0.36
Consensus pattern (28 bp):
CAAAATGCAATTTTGGAAAGTTTGAAGT
Found at i:353211 original size:87 final size:88
Alignment explanation
Indices: 353050--353212 Score: 197
Period size: 87 Copynumber: 1.9 Consensus size: 88
353040 GCTAAAATAT
* * *
353050 AATTTTGGAAAAGTTTAGGGCCTAAAATGTAATTTTTAAAGAATATAGGGGGCCAAAATGTGATT
1 AATTTTGGAAAAGTTTAGGGCCTAAAATGTAATTTTTAAAGAATATAGAGGACCAAAATATGATT
**
353115 TTGGGAAGTTTGAAGTCAAATGC
66 TTGAAAAGTTTGAAGTCAAATGC
* * * * *
353138 AATTTTGGAAAAGTTTGGGGTC-AAAATGTAATTTTTAGAA-AGTTTA-AGGATCAAAATATGAT
1 AATTTTGGAAAAGTTTAGGGCCTAAAATGTAATTTTTA-AAGAATATAGAGGACCAAAATATGA-
353200 TTTTGAAAAGTTT
64 TTTTGAAAAGTTT
353213 AGGGATCTCT
Statistics
Matches: 63, Mismatches: 10, Indels: 5
0.81 0.13 0.06
Matches are distributed among these distances:
86 11 0.17
87 30 0.48
88 22 0.35
ACGTcount: A:0.37, C:0.05, G:0.23, T:0.35
Consensus pattern (88 bp):
AATTTTGGAAAAGTTTAGGGCCTAAAATGTAATTTTTAAAGAATATAGAGGACCAAAATATGATT
TTGAAAAGTTTGAAGTCAAATGC
Found at i:355598 original size:3 final size:3
Alignment explanation
Indices: 355590--355621 Score: 64
Period size: 3 Copynumber: 10.7 Consensus size: 3
355580 CCTCTCATAA
355590 TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TC
1 TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TC
355622 CTTTTTGATT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 29 1.00
ACGTcount: A:0.00, C:0.34, G:0.00, T:0.66
Consensus pattern (3 bp):
TCT
Found at i:359176 original size:15 final size:16
Alignment explanation
Indices: 359144--359177 Score: 52
Period size: 16 Copynumber: 2.2 Consensus size: 16
359134 ATTTAAATTT
*
359144 AAATTATTATGCTAAC
1 AAATTATTATGATAAC
359160 AAATTATTAT-ATAAC
1 AAATTATTATGATAAC
359175 AAA
1 AAA
359178 ACTTTTTATT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
15 7 0.41
16 10 0.59
ACGTcount: A:0.53, C:0.09, G:0.03, T:0.35
Consensus pattern (16 bp):
AAATTATTATGATAAC
Found at i:360325 original size:32 final size:32
Alignment explanation
Indices: 360279--360371 Score: 150
Period size: 32 Copynumber: 2.9 Consensus size: 32
360269 TTTTTTCATC
* * *
360279 AAAGTTGATGTTTGTTATAATTTCACAAAATT
1 AAAGTTGGTATTTGTTATCATTTCACAAAATT
*
360311 GAAGTTGGTATTTGTTATCATTTCACAAAATT
1 AAAGTTGGTATTTGTTATCATTTCACAAAATT
360343 AAAGTTGGTATTTGTTATCATTTCACAAA
1 AAAGTTGGTATTTGTTATCATTTCACAAA
360372 GTAAACCGTG
Statistics
Matches: 56, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
32 56 1.00
ACGTcount: A:0.34, C:0.09, G:0.14, T:0.43
Consensus pattern (32 bp):
AAAGTTGGTATTTGTTATCATTTCACAAAATT
Done.