genome.fa.s15222.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01015222.1 Kokia drynarioides strain JFW-HI SEQ_130266, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  288427

Tables:   1   

This is table  1  of  1  ( 86 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1--38	2	19.0	2	100	0	76	50	0	0	50	1.00
3902--4024	64	1.9	63	82	8	151	49	4	8	37	1.54
8237--8274	18	2.2	16	90	9	58	23	7	2	65	1.32
8316--8354	17	2.3	17	86	0	51	46	23	12	17	1.83
12898--12972	31	2.5	29	79	14	89	44	17	13	25	1.85
19337--19379	20	2.3	18	80	11	52	67	6	0	25	1.15
22081--22118	20	1.9	20	88	0	58	31	2	2	63	1.22
22070--22120	14	3.5	14	75	15	50	29	1	1	66	1.13
31173--31215	17	2.6	17	82	10	54	53	0	4	41	1.21
35977--36553	247	2.3	247	88	3	829	38	10	10	40	1.74
44605--44637	2	16.5	2	100	0	66	48	0	0	51	1.00
44921--44976	24	2.3	24	87	0	76	19	16	26	37	1.92
45514--45623	56	1.9	56	83	3	139	32	11	11	43	1.78
59877--59945	15	4.5	15	71	8	50	50	2	5	40	1.41
59934--59973	20	2.0	21	90	5	64	62	0	0	37	0.95
60971--61058	29	3.0	29	76	5	88	37	25	3	34	1.73
61037--61198	30	5.5	31	66	19	96	32	22	6	38	1.81
61127--61232	28	3.7	28	72	16	92	29	28	7	34	1.85
61020--61226	58	3.5	57	79	13	192	30	24	7	37	1.83
73609--73781	51	3.4	51	70	12	149	34	17	16	31	1.92
73602--73796	101	1.9	101	87	0	282	35	16	16	30	1.92
74027--74678	209	3.1	208	84	3	807	36	18	22	23	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
75020--75085	6	11.5	6	70	15	50	45	1	3	50	1.26
75020--75082	17	3.7	17	78	0	72	44	1	3	50	1.27
75792--75902	3	36.0	3	73	12	66	59	0	1	37	1.14
75792--75868	29	2.5	30	81	10	77	55	1	2	40	1.22
76906--76963	29	2.0	30	89	3	91	43	22	0	34	1.54
76907--77016	29	3.7	29	76	3	85	39	22	1	36	1.65
76915--77076	58	2.7	59	76	10	136	35	23	4	35	1.77
78761--78826	23	2.9	22	80	8	69	50	3	1	45	1.26
80241--80278	20	1.9	20	84	10	51	31	0	7	60	1.25
82530--82576	14	3.4	14	73	8	51	68	2	0	29	1.02
86843--87052	105	2.0	105	98	0	402	30	15	17	37	1.91
87873--87924	25	2.1	25	92	0	86	32	19	15	32	1.93
97570--97618	25	2.0	23	88	7	71	26	4	4	65	1.29
100413--100457	19	2.3	20	80	3	56	64	2	4	28	1.25
105565--105603	21	1.9	21	89	5	62	28	0	10	61	1.28
111324--111377	27	2.0	26	86	10	74	53	3	0	42	1.18
132008--132041	16	2.1	17	88	5	52	55	0	5	38	1.24
137306--137342	17	2.2	18	85	9	51	56	24	0	18	1.41
137294--137340	24	2.0	24	86	0	67	51	27	0	21	1.48
144513--144559	23	2.1	23	84	4	60	42	0	6	51	1.27
145467--145491	3	8.3	3	100	0	50	32	36	0	32	1.58
151405--151446	21	2.0	22	90	4	68	54	2	0	42	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
152184--152262	30	2.7	30	76	5	72	30	7	7	54	1.56
154884--154916	17	1.9	17	88	11	50	33	0	6	60	1.21
159747--159819	9	7.6	10	70	22	50	61	2	1	34	1.19
159759--159828	29	2.4	29	81	13	83	62	2	1	32	1.18
159747--159828	19	4.3	19	75	10	69	62	3	1	32	1.21
161407--161439	14	2.3	15	89	5	50	60	0	3	36	1.12
162135--162173	3	13.0	3	100	0	78	33	0	0	66	0.92
162425--162458	18	1.9	18	88	5	52	29	0	5	64	1.17
168843--168903	28	2.2	28	80	11	72	49	8	6	36	1.59
169099--169141	18	2.3	18	84	4	50	41	16	9	32	1.80
170179--170222	3	14.7	3	90	0	70	65	2	2	29	1.16
176442--176518	36	2.1	36	100	0	154	25	22	16	35	1.95
181189--181229	20	2.0	20	85	4	55	60	0	0	39	0.96
200434--200458	2	12.5	2	100	0	50	48	0	0	52	1.00
207900--208111	106	2.0	106	97	0	397	27	17	18	35	1.94
211563--211614	18	3.0	18	81	10	56	51	0	1	46	1.12
230444--230782	30	11.4	30	78	8	214	36	3	24	34	1.73
230456--230782	29	11.0	29	79	8	234	36	3	24	35	1.71
230456--230780	59	5.5	58	74	10	210	36	3	24	35	1.72
230647--230801	58	2.6	59	80	10	192	38	0	23	38	1.55
234403--234432	16	1.9	15	93	6	51	30	0	0	70	0.88
246922--247016	47	2.0	47	100	0	190	28	16	12	42	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
250319--250371	16	3.5	16	75	15	58	50	1	11	35	1.49
250322--250379	29	2.0	29	96	0	107	51	1	13	32	1.51
253090--253483	197	2.0	197	99	0	779	39	16	15	28	1.89
254938--254973	9	3.9	9	92	3	54	13	11	5	69	1.34
266963--267001	18	2.2	18	86	9	53	38	2	0	58	1.12
268498--268545	16	3.0	16	76	11	62	56	2	0	41	1.11
268500--268551	18	3.3	15	75	19	52	53	3	0	42	1.19
268498--268571	32	2.3	32	84	9	89	52	6	0	40	1.28
269583--269638	26	2.1	27	83	3	69	46	0	1	51	1.11
271182--271216	17	2.1	17	89	5	54	31	2	11	54	1.51
272283--272920	213	3.0	213	99	0	1249	30	8	12	48	1.70
272986--273056	15	4.5	15	71	11	54	47	0	2	49	1.16
272984--273055	33	2.2	32	87	7	101	48	0	2	48	1.16
275239--275273	16	2.1	17	89	5	54	51	5	2	40	1.40
276103--276142	18	2.2	19	86	13	57	25	5	2	67	1.23
279571--279627	24	2.4	24	100	0	114	33	15	22	28	1.95
287784--287842	4	14.2	4	82	7	64	71	0	28	0	0.87
287780--287860	25	3.3	25	78	10	87	67	0	32	0	0.91
288035--288059	12	2.1	12	100	0	50	48	0	0	52	1.00
288217--288261	21	2.2	21	88	4	65	26	2	13	57	1.48

Tables:   1

The End!