Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01015227.1 Kokia drynarioides strain JFW-HI SEQ_130272, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 249131
ACGTcount: A:0.34, C:0.16, G:0.17, T:0.33

Warning! 75 characters in sequence are not A, C, G, or T


File 2 of 2

Found at i:245393 original size:87 final size:86

Alignment explanation


    Indices: 244948--245404  Score: 312
    Period size: 88  Copynumber: 5.2  Consensus size: 86

     244938 ATTGTTCAAC

                        *           *                *       *               
     244948 AATCCCATTTTTAACCCCAAAACTTCC-AAAATCCCATTTTTACCCTC-GAAC-TTCTAAAAATC
          1 AATCCCA-TTTTGACCCCAAAACTACCAAAAATCCCATTTTAACCC-CAAAACTTTC-AAAAATC

                     *   *        *  
     245010 CCATTTTTAACCCAAAACTTTCAAA
         63 CCATTTTTACCCCCAAAC-TTCTAA

                        *  *        *                *     * *  *           *
     245035 AATCCCATTTTTAACTCCAAAACTTCCAAAAATCCCATTTTTA-CCCTAGACCTTCTAAAAATCT
          1 AATCCCA-TTTTGACCCCAAAACTACCAAAAATCCCATTTTAACCCCAAAACTTTC-AAAAATCC

            *            *        *  
     245099 AATTTTTAACCCCAAAACTTCAAAA
         64 CATTTTT-ACCCCCAAACTTC-TAA

                *      * *   *  *  ***           *                *          
     245124 AATCTCATTTTAATCCCGAAGCTTTTAAAAATCCCAAATTTAACCCCAAAACTTCCAAAAAATCC
          1 AATCCCATTTTGACCCCAAAACTACCAAAAATCCC-ATTTTAACCCCAAAACTTTC-AAAAATCC

                         *          
     245189 CATTTTTACCCCCGAACTTCTAAA
         64 CATTTTTACCCCCAAACTTCT-AA

                 *    **           *                    * *  *    *          
     245213 AATCCAATTTCAACCCCAAAACTTCCAAAAATCCCATTTTAACCTCGAAGCTTTTAAAAATCCCA
          1 AATCCCATTTTGACCCCAAAACTACCAAAAATCCCATTTTAACCCCAAAACTTTCAAAAATCCC-

                 *   * *    *  *  
     245278 ATTTTAACCTCGAAACCTCCAA
         65 ATTTTTACCCCCAAACTTCTAA

                            *               **                           *   
     245300 AATCCCATTTTGACCCTAAAACTACCAAAAATTTCATTTTTAACCCCAAAACTTTCAAAAGGT-C
          1 AATCCCATTTTGACCCCAAAACTACCAAAAATCCCA-TTTTAACCCCAAAACTTTCAAAA-ATCC

                         *         
     245364 CATTTTTACCCCCTAACTTCTAA
         64 CATTTTTACCCCCAAACTTCTAA

             *                
     245387 AGTCCCATTTTTGACCCC
          1 AATCCCA-TTTTGACCCC

     245405 GGATTTTTCC


Statistics
Matches: 293,  Mismatches: 65, Indels: 23
        0.77            0.17        0.06

Matches are distributed among these distances:
  86    1  0.00
  87   92  0.31
  88  115  0.39
  89   64  0.22
  90   21  0.07

ACGTcount: A:0.37, C:0.30, G:0.03, T:0.30


Consensus pattern (86 bp):   
AATCCCATTTTGACCCCAAAACTACCAAAAATCCCATTTTAACCCCAAAACTTTCAAAAATCCCA
TTTTTACCCCCAAACTTCTAA

Done.