Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01001523.1 Kokia drynarioides strain JFW-HI SEQ_113086, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1984
ACGTcount: A:0.38, C:0.12, G:0.14, T:0.36


Found at i:283 original size:33 final size:30

Alignment explanation


    Indices: 237--296  Score: 84
    Period size: 33  Copynumber: 1.9  Consensus size: 30

        227 CATTTAATCA

                               *           
        237 GATAAATTAATGATATTAACTATTTAAACTT
          1 GATAAATTAATGATATTAAAT-TTTAAACTT

                                         
        268 GATAAGATTAAATGATATTAAATTTTAAA
          1 GATAA-ATT-AATGATATTAAATTTTAAA

        297 TTTAAATATA


Statistics
Matches: 26,  Mismatches: 1, Indels: 3
        0.87            0.03        0.10

Matches are distributed among these distances:
  31    5  0.19
  32    9  0.35
  33   12  0.46

ACGTcount: A:0.48, C:0.03, G:0.08, T:0.40


Consensus pattern (30 bp):   
GATAAATTAATGATATTAAATTTTAAACTT

Found at i:813 original size:2 final size:2

Alignment explanation


    Indices: 806--831  Score: 52
    Period size: 2  Copynumber: 13.0  Consensus size: 2

        796 CCTTTCATTT

                                                  
        806 TA TA TA TA TA TA TA TA TA TA TA TA TA
          1 TA TA TA TA TA TA TA TA TA TA TA TA TA

        832 CATGAGACTT


Statistics
Matches: 24,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   2   24  1.00

ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50


Consensus pattern (2 bp):   
TA

Done.