genome.fa.s15230.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01015230.1 Kokia drynarioides strain JFW-HI SEQ_130275, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  302659

Tables:   1   

This is table  1  of  1  ( 83 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1084--1117	17	1.9	18	88	5	52	5	8	17	67	1.37
1745--2099	76	4.7	76	89	4	551	41	25	8	23	1.83
1729--2099	75	4.9	76	88	3	554	41	26	8	23	1.83
2029--2162	63	2.1	63	90	4	207	41	23	8	26	1.84
1954--2220	138	1.9	139	90	2	430	40	24	7	26	1.82
2290--2415	42	3.0	42	89	0	162	14	30	11	44	1.79
2294--2436	42	3.4	42	83	3	110	15	30	9	44	1.78
3498--3531	17	2.0	17	88	11	52	29	0	5	64	1.17
10323--10353	4	7.8	4	100	0	62	25	22	0	51	1.48
12619--12643	2	12.5	2	100	0	50	48	0	0	52	1.00
18376--18413	15	2.4	17	82	13	53	34	0	0	65	0.93
22537--22566	2	15.0	2	100	0	60	50	0	0	50	1.00
25552--25588	15	2.5	15	90	0	56	64	8	2	24	1.34
26229--26265	6	6.5	6	96	3	60	67	16	16	0	1.23
28046--28072	2	13.5	2	100	0	54	48	0	0	51	1.00
29603--29628	1	26.0	1	100	0	52	100	0	0	0	0.00
30107--30145	7	5.6	7	100	0	78	15	0	56	28	1.40
30195--30229	8	4.4	8	100	0	70	40	0	37	22	1.55
34134--34165	2	16.0	2	100	0	64	50	0	0	50	1.00
51952--52028	17	4.5	17	71	14	68	28	28	23	19	1.98
51952--52028	34	2.2	35	79	6	95	28	28	23	19	1.98
63529--63571	21	2.0	21	82	8	52	44	11	25	18	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
79421--79454	2	17.0	2	100	0	68	50	0	50	0	1.00
79761--79803	17	2.5	17	76	0	50	48	2	6	41	1.43
79839--79876	17	2.2	17	86	9	51	68	0	0	31	0.90
80118--80157	12	3.2	12	80	13	53	50	2	0	47	1.14
81304--81353	17	2.9	17	93	0	82	42	20	28	10	1.84
81304--81370	17	3.9	17	90	2	80	40	20	28	10	1.86
82503--82542	21	1.9	21	94	0	71	22	20	22	35	1.96
84687--84714	2	14.0	2	100	0	56	50	0	0	50	1.00
96495--96544	16	3.2	16	71	21	52	60	4	2	34	1.27
97668--97692	6	4.2	6	100	0	50	32	0	68	0	0.90
104989--105087	48	2.1	48	100	0	198	43	14	17	25	1.86
107235--107293	29	2.0	29	100	0	118	47	3	22	27	1.67
112346--112384	11	3.5	11	82	0	51	20	20	25	33	1.97
112378--112417	14	2.9	14	82	14	55	17	12	27	42	1.85
112386--112410	7	3.6	7	100	0	50	16	12	28	44	1.83
118546--118581	7	5.1	7	100	0	72	27	13	13	44	1.82
127029--127075	23	2.0	23	95	0	85	48	10	14	25	1.76
135654--135689	11	3.3	11	84	0	54	50	0	0	50	1.00
136488--136513	2	13.0	2	100	0	52	50	0	0	50	1.00
153127--153236	54	2.0	54	96	0	202	27	13	11	47	1.78
153605--153661	30	1.9	30	86	13	82	47	0	0	52	1.00
153685--153756	36	2.0	36	91	2	117	34	4	4	56	1.37
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
154288--154400	58	1.9	58	92	0	190	33	26	13	26	1.93
156826--156855	13	2.2	14	94	5	53	3	30	0	66	1.07
158901--158950	25	2.0	25	92	0	82	18	20	24	38	1.93
163585--163635	19	2.6	21	79	14	56	54	3	0	41	1.19
163614--163661	24	2.0	24	84	8	62	52	2	0	45	1.12
163585--163667	9	8.4	9	68	21	51	55	2	0	42	1.13
169567--169602	2	18.0	2	100	0	72	0	50	0	50	1.00
191935--191978	18	2.5	17	85	7	54	56	0	20	22	1.42
191933--191985	23	2.3	23	84	12	74	56	0	18	24	1.42
192307--192603	164	1.8	163	95	0	540	27	20	17	34	1.95
205692--205730	9	4.3	9	86	0	51	71	5	0	23	1.05
212683--212728	13	3.7	13	82	8	60	54	13	0	32	1.39
212734--212763	5	6.0	5	100	0	60	80	0	0	20	0.72
214951--215058	23	4.6	23	72	13	85	12	24	22	41	1.87
214939--215058	48	2.6	46	75	11	120	12	24	21	41	1.87
215059--215103	23	2.0	23	90	0	72	11	15	20	53	1.72
217061--217100	12	3.3	12	92	0	71	75	10	0	15	1.05
217061--217100	18	2.2	18	90	0	62	75	10	0	15	1.05
229114--229148	14	2.6	14	90	4	54	28	0	0	71	0.86
231149--231275	63	2.0	63	96	0	236	26	7	7	57	1.55
232208--232254	24	1.9	25	83	12	62	44	0	4	51	1.21
232491--232556	31	2.2	29	83	5	78	34	7	12	45	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
232512--232570	29	2.0	30	86	3	84	30	5	15	49	1.66
249638--249732	46	2.1	46	87	0	136	33	8	20	37	1.82
253565--253639	28	2.4	28	85	14	87	54	1	0	44	1.08
263530--263601	30	2.4	31	88	6	103	47	19	13	19	1.83
271693--271734	19	2.2	19	87	8	59	38	0	2	59	1.10
275592--275624	4	8.2	4	93	0	57	72	0	3	24	0.98
276937--276972	17	2.3	17	86	13	51	52	0	11	36	1.37
281582--281624	18	2.2	20	88	8	63	67	2	2	27	1.15
289087--289145	32	1.9	31	83	10	77	52	16	1	28	1.54
289432--289494	26	2.4	26	89	2	90	47	4	6	41	1.50
291477--291535	19	3.0	19	80	14	66	47	16	8	27	1.76
298241--298297	19	2.9	19	76	5	60	59	0	0	40	0.97
298366--298405	21	1.9	21	90	10	64	65	5	5	25	1.34
298509--298542	17	2.0	17	88	0	50	73	0	5	20	1.04
298944--298996	20	2.8	20	80	5	65	30	0	1	67	1.01
299157--299217	32	2.0	30	83	6	77	24	4	16	54	1.62
299470--299636	91	1.8	91	84	2	228	33	10	16	38	1.84

Tables:   1

The End!