genome.fa.s15236.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01015236.1 Kokia drynarioides strain JFW-HI SEQ_130281, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  162947

Tables:   1   

This is table  1  of  1  ( 63 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3230--3290	30	2.0	30	83	0	77	11	37	32	18	1.86
4390--4475	34	2.5	33	83	3	100	52	8	2	37	1.44
4426--4476	6	9.0	6	75	12	54	50	1	1	45	1.24
4426--4474	16	3.0	16	87	3	71	53	2	2	42	1.24
8582--8656	35	2.2	35	80	4	91	44	17	10	28	1.82
18438--18464	1	27.0	1	100	0	54	0	0	0	100	0.00
31452--31483	14	2.3	14	94	0	55	34	0	0	65	0.93
33945--33999	19	2.8	21	75	13	62	50	10	0	38	1.37
34323--34381	29	2.1	28	84	9	75	61	3	11	23	1.46
35907--35983	34	2.4	30	79	12	91	54	5	5	35	1.45
37588--37628	6	6.8	6	97	0	73	0	12	68	19	1.21
38069--38107	18	2.2	18	100	0	78	28	5	7	58	1.47
49980--50032	27	2.0	27	85	7	72	32	1	7	58	1.37
53762--53815	25	2.1	26	83	10	67	61	3	0	35	1.14
54732--54770	13	2.9	13	82	17	53	51	2	0	46	1.14
64229--64341	50	2.2	51	90	1	174	43	4	6	46	1.49
79094--79341	123	2.0	122	92	2	417	38	7	5	48	1.55
79480--79511	14	2.3	15	89	10	50	43	3	0	53	1.16
80093--80153	30	2.0	30	84	6	79	42	6	9	40	1.64
80746--80779	14	2.5	14	90	4	52	41	0	0	58	0.98
82812--82860	24	2.0	24	100	0	98	59	4	4	32	1.35
83524--83570	18	2.6	18	77	12	51	27	0	4	68	1.08
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
86450--86476	14	1.9	14	100	0	54	51	11	0	37	1.37
86516--86563	2	24.5	2	95	4	89	50	0	0	50	1.00
88599--88664	32	2.1	32	88	0	96	28	15	12	43	1.82
92624--92676	18	2.8	18	78	16	63	77	7	13	1	1.06
93522--93734	99	2.2	99	78	6	236	36	16	28	18	1.93
93486--93700	49	4.4	49	78	2	182	38	14	28	18	1.90
93925--94250	41	7.9	41	83	2	339	33	18	18	29	1.95
93930--94250	123	2.6	123	82	3	394	33	18	18	29	1.95
98005--98044	21	2.0	20	85	5	53	45	2	15	37	1.59
106133--106267	40	3.4	40	86	2	155	28	15	17	38	1.90
106154--106275	40	3.0	40	85	2	156	28	16	16	38	1.90
124920--125032	37	3.1	37	100	0	226	27	10	23	38	1.88
128543--128567	4	6.2	4	100	0	50	24	48	0	28	1.52
129726--129776	21	2.4	21	83	0	75	31	5	9	52	1.58
131222--131413	96	2.0	96	82	6	237	36	14	19	29	1.92
131792--132086	29	10.1	29	79	10	282	32	3	29	33	1.75
131796--132052	59	4.4	59	86	5	342	33	4	28	33	1.77
133127--133172	16	2.9	16	81	9	58	50	0	0	50	1.00
133597--133632	15	2.4	15	95	0	63	8	13	47	30	1.73
133857--133938	17	4.8	17	74	12	69	48	3	3	43	1.38
133874--133966	11	8.0	11	73	12	55	53	1	3	41	1.24
133909--133966	13	4.8	12	73	14	57	56	0	3	39	1.16
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
133872--133937	17	3.7	18	87	4	82	53	1	3	42	1.25
133872--133966	6	16.2	6	70	12	72	53	1	3	42	1.23
134560--134934	186	2.0	187	91	1	601	21	22	21	35	1.96
134741--135131	206	1.9	206	92	0	656	20	21	21	36	1.96
135633--135692	27	2.2	27	85	8	77	56	6	16	20	1.62
146450--146641	96	2.0	96	82	6	237	36	14	19	29	1.91
146876--147247	29	12.8	28	72	15	217	33	3	28	35	1.73
146913--147249	59	5.8	59	79	9	239	33	3	27	35	1.73
147016--147253	30	8.1	30	77	8	222	31	2	29	36	1.71
146909--147245	30	11.5	27	71	15	135	34	2	27	35	1.72
148345--148390	16	2.9	16	81	9	58	50	0	0	50	1.00
149066--149143	6	13.2	6	77	8	79	53	1	2	42	1.22
149066--149143	17	4.4	17	80	4	84	53	1	2	42	1.22
150403--150454	2	26.5	2	92	3	88	48	0	0	51	1.00
151679--151745	9	7.6	9	75	13	59	59	2	0	37	1.13
151686--151731	18	2.6	18	83	16	69	54	2	0	43	1.12
151733--151860	66	1.9	65	90	6	204	58	3	7	29	1.44
155754--155793	19	2.1	19	100	0	80	27	10	10	52	1.66
159331--159370	20	2.0	21	90	5	64	32	10	0	57	1.32

Tables:   1

The End!