genome.fa.s15239.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01015239.1 Kokia drynarioides strain JFW-HI SEQ_130284, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  106099

Tables:   1   

This is table  1  of  1  ( 69 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
105--197	37	2.4	38	80	8	100	22	21	26	29	1.99
9202--9269	4	16.8	4	77	8	66	69	0	29	1	0.98
9202--9269	17	4.2	16	79	9	66	69	0	29	1	0.98
9203--9269	29	2.4	27	80	7	80	68	0	29	1	0.98
9524--10935	711	2.0	701	100	0	2734	30	17	23	27	1.97
11157--11438	78	3.6	77	76	6	244	22	30	19	27	1.98
11852--11935	6	14.7	6	72	14	70	44	1	3	51	1.26
11852--11937	17	5.1	17	80	4	102	43	1	3	52	1.26
13313--13415	36	2.8	36	88	1	134	20	27	27	25	1.99
13813--13998	30	6.3	29	80	8	164	32	25	2	39	1.68
13813--14019	58	3.5	59	81	8	210	34	25	1	38	1.67
13814--13985	88	1.9	89	82	5	215	33	24	1	40	1.66
13811--14281	29	16.3	29	72	13	178	36	25	2	35	1.71
13904--14044	59	2.4	60	83	8	166	35	22	2	39	1.66
14246--14330	29	2.9	30	75	19	90	38	20	3	37	1.70
23664--24123	29	15.7	27	76	16	359	31	3	30	34	1.75
23671--24123	59	7.7	59	90	4	582	31	3	30	34	1.75
25940--26050	17	6.5	18	77	11	117	51	6	0	42	1.27
25941--26033	34	2.7	34	98	0	177	51	7	0	40	1.30
26353--26814	208	2.2	208	87	0	681	21	20	19	38	1.93
26755--26851	37	2.6	37	93	0	158	25	21	19	32	1.97
26803--27395	204	2.9	204	92	0	1015	20	23	21	34	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
28632--28658	13	2.1	13	100	0	54	22	40	14	22	1.90
39287--39667	30	12.7	30	75	13	249	31	3	28	35	1.74
39326--39670	59	5.8	60	75	15	263	31	3	28	36	1.74
39415--39670	118	2.1	122	89	5	389	31	3	28	36	1.74
41474--41550	17	4.5	18	79	9	72	51	5	1	41	1.32
41474--41550	34	2.3	34	83	0	100	51	5	1	41	1.32
42678--42779	51	2.0	51	96	0	186	35	9	19	35	1.85
43726--44091	100	3.7	97	75	9	294	39	20	14	26	1.90
46312--46456	59	2.5	59	85	5	188	38	3	23	34	1.72
46312--46456	30	5.0	29	88	5	186	38	3	23	34	1.72
47393--47453	30	2.0	30	81	6	70	57	3	3	36	1.31
47349--47555	101	2.0	103	83	7	262	46	4	7	41	1.54
57029--57103	30	2.5	28	74	20	55	40	0	21	38	1.53
57128--57441	30	10.6	29	80	9	323	38	1	22	36	1.65
57133--57450	59	5.4	58	83	9	335	39	1	21	36	1.63
61503--61550	20	2.3	20	78	7	51	29	2	2	66	1.14
61769--61816	7	6.9	7	100	0	96	56	14	29	0	1.39
62224--62275	18	2.8	19	77	13	63	28	0	3	67	1.08
62424--62465	20	2.1	20	90	0	66	59	0	2	38	1.10
62627--62690	20	3.1	21	76	12	53	67	0	0	32	0.91
62769--62809	21	1.9	22	90	5	66	24	4	2	68	1.22
62861--62904	18	2.5	17	78	10	52	20	2	0	77	0.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
62861--62921	20	3.1	20	80	17	74	21	3	0	75	0.94
62872--62938	28	2.3	30	82	5	84	26	2	2	67	1.20
63645--64072	229	1.9	229	97	0	811	34	14	11	39	1.82
65234--65488	92	2.8	92	79	7	263	33	8	17	40	1.79
66508--66632	31	4.2	31	71	9	98	25	13	9	51	1.71
66517--66571	28	2.0	26	86	6	74	21	9	9	60	1.55
66836--67023	60	3.2	60	82	7	197	47	11	13	27	1.77
66879--67023	59	2.5	57	83	5	173	48	11	13	25	1.76
73517--73588	24	3.3	21	73	17	58	72	4	2	20	1.15
73537--73614	21	3.8	19	71	21	61	70	5	3	20	1.22
76242--76384	31	4.3	31	74	12	97	26	2	7	63	1.32
76246--76381	37	4.0	35	77	11	140	26	2	8	63	1.34
85184--85369	91	2.0	91	98	0	363	32	21	14	31	1.93
87777--87877	30	3.5	30	79	6	136	22	17	14	44	1.86
88802--89015	101	2.1	99	81	4	241	38	17	17	27	1.92
88802--89048	100	2.5	101	80	3	257	36	17	17	27	1.93
90533--90589	27	2.2	26	83	3	69	28	5	7	59	1.45
92780--92815	16	2.2	16	90	0	54	11	0	2	86	0.68
93531--93716	96	1.9	97	85	5	261	37	15	18	29	1.91
93901--94744	205	4.1	205	88	0	1213	20	20	21	36	1.95
104411--104591	95	1.9	96	83	4	240	38	14	16	30	1.89
104813--104874	27	2.2	28	94	2	108	25	6	30	37	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
104912--105404	59	8.4	58	82	8	441	34	3	26	35	1.75
104958--105412	30	15.4	30	79	10	404	33	4	26	36	1.76
104958--105412	89	5.1	86	79	10	438	33	4	26	36	1.76

Tables:   1

The End!