genome.fa.s15242.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01015242.1 Kokia drynarioides strain JFW-HI SEQ_130287, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  157169

Tables:   1   

This is table  1  of  1  ( 75 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1751--1985	30	8.0	29	83	6	260	36	26	3	33	1.73
1753--1985	59	4.0	58	83	5	256	36	26	3	33	1.73
1755--1985	89	2.6	89	83	6	265	36	25	3	33	1.73
1786--2034	88	2.8	88	80	9	249	36	26	4	32	1.78
2019--2136	28	4.1	28	68	17	80	34	30	5	29	1.79
2361--2547	96	1.9	96	83	8	238	31	18	13	36	1.90
10172--10231	11	5.2	11	78	8	57	43	1	3	51	1.28
10157--10217	6	10.7	6	75	10	65	40	0	3	55	1.16
10157--10232	17	4.4	17	83	3	98	42	1	2	53	1.23
10960--10999	3	13.0	3	89	5	62	62	2	0	35	1.09
12132--12299	30	5.7	29	73	11	117	36	25	3	34	1.74
12197--12272	29	2.5	31	81	8	95	42	19	2	35	1.66
12144--12358	30	7.2	30	72	13	115	36	24	5	34	1.77
12144--12365	59	3.8	58	77	10	166	35	23	4	35	1.77
12216--12365	29	5.1	28	76	10	97	34	23	6	36	1.79
12321--12483	59	2.8	60	76	10	167	28	20	10	39	1.86
13865--13903	18	2.1	19	85	4	53	43	12	10	33	1.77
14681--14709	13	2.1	14	93	6	51	41	0	0	58	0.98
22248--22325	29	2.5	31	85	8	106	34	1	14	50	1.51
25829--25868	2	20.0	2	100	0	80	50	0	0	50	1.00
27784--27825	21	2.1	21	86	8	61	21	0	2	76	0.90
28485--28545	18	3.4	17	78	15	61	47	3	1	47	1.28
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29279--29327	17	3.0	17	76	8	57	51	0	0	48	1.00
29311--29344	9	3.7	9	88	7	50	58	0	2	38	1.13
30289--30558	29	9.2	29	80	9	307	35	31	5	28	1.79
30294--30558	60	4.5	58	88	5	372	35	30	4	28	1.78
30565--30627	29	2.2	29	82	5	74	34	30	9	25	1.88
41280--41332	20	2.7	20	80	11	56	64	0	1	33	1.05
41374--41413	22	1.9	21	85	10	55	45	0	2	52	1.14
44078--44360	141	2.0	141	96	0	521	40	7	16	35	1.76
48315--48528	44	4.9	44	83	2	241	27	20	13	38	1.90
48512--48731	109	2.0	110	84	2	291	29	17	26	26	1.97
49557--49617	30	2.0	31	90	6	99	37	0	40	21	1.53
49659--49695	18	2.1	18	90	10	58	24	8	16	51	1.71
49741--49775	18	1.9	18	94	0	61	42	20	8	28	1.81
50924--50964	21	2.0	20	95	4	73	21	0	4	73	1.02
50936--50974	15	2.6	15	84	12	53	28	0	2	69	1.02
50957--50984	10	2.8	10	100	0	56	35	0	0	64	0.94
50956--51000	19	2.3	20	81	14	58	33	0	0	66	0.92
56839--57023	45	4.1	45	95	0	316	22	18	16	42	1.89
63147--63205	31	1.9	31	83	13	77	45	13	11	28	1.79
79689--80000	166	1.9	160	83	7	405	42	12	12	33	1.80
92049--92076	2	14.0	2	100	0	56	50	0	0	50	1.00
101790--101816	5	5.4	5	100	0	54	0	18	0	81	0.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
107063--107131	12	5.8	12	68	11	52	40	17	14	27	1.88
107040--107126	23	3.7	23	83	7	106	40	18	12	28	1.87
107171--107206	12	3.0	12	83	0	54	44	19	16	19	1.87
109601--109641	21	1.9	22	90	5	66	24	2	14	58	1.49
110245--110354	58	1.9	58	81	7	134	26	13	10	49	1.75
110245--110416	60	2.9	59	78	6	170	25	15	11	48	1.78
111227--111266	18	2.1	20	86	9	57	60	0	2	37	1.11
118643--118697	28	2.0	28	85	7	76	70	5	1	21	1.16
119064--119112	25	1.9	26	84	12	66	46	2	6	44	1.39
119389--119468	31	2.6	31	88	2	126	26	15	15	43	1.85
119559--119650	43	2.1	43	87	0	130	22	18	30	28	1.97
122478--123225	191	3.9	191	92	1	1239	37	9	16	37	1.81
123732--123895	29	5.7	29	84	0	195	43	15	17	23	1.87
124330--124720	53	7.3	53	81	5	376	28	33	15	21	1.95
124333--124713	106	3.6	106	80	4	415	28	33	16	22	1.95
124330--124720	161	2.4	160	80	4	448	28	33	15	21	1.95
127854--127897	8	5.5	8	97	0	79	52	22	2	22	1.58
130332--130377	21	2.2	21	84	7	58	50	6	2	41	1.40
130513--130542	1	30.0	1	100	0	60	100	0	0	0	0.00
133356--133417	30	2.1	30	84	0	79	37	14	25	22	1.92
136904--136952	21	2.3	21	85	0	62	34	28	6	30	1.82
136953--136979	7	3.9	7	100	0	54	14	44	11	29	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
137003--137048	21	2.2	20	81	11	56	28	13	23	34	1.92
139222--139257	2	18.0	2	94	0	63	52	0	47	0	1.00
144352--144388	2	18.5	2	94	0	65	51	2	45	0	1.15
144542--144579	20	1.9	20	94	0	67	44	21	5	28	1.73
145023--145055	11	3.3	10	88	12	50	30	0	0	69	0.88
145037--145104	28	2.4	30	75	9	70	45	0	2	51	1.16
147108--147168	31	2.0	31	83	6	79	49	8	4	37	1.54
156194--156234	21	2.0	21	95	0	73	43	4	19	31	1.72
156449--156494	24	1.9	24	86	0	65	43	0	4	52	1.21

Tables:   1

The End!