genome.fa.s15243.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01015243.1 Kokia drynarioides strain JFW-HI SEQ_130288, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  178175

Tables:   1   

This is table  1  of  1  ( 74 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
441--529	16	5.2	17	72	14	76	48	4	1	46	1.30
441--497	18	3.4	16	81	18	71	45	3	0	50	1.18
442--533	17	5.4	17	75	12	75	50	5	1	43	1.32
4861--5123	30	8.8	29	73	12	158	34	3	25	36	1.72
5039--5123	29	2.9	29	87	3	107	35	2	24	37	1.69
4923--5124	90	2.3	90	82	6	243	34	2	25	37	1.71
5538--5623	36	2.4	36	96	0	154	30	18	26	24	1.98
6977--7028	17	3.1	16	88	5	68	59	3	0	36	1.16
6970--7026	23	2.5	22	82	8	60	57	3	0	38	1.16
7541--8061	39	13.4	39	73	6	303	24	19	31	23	1.98
7541--8063	78	6.7	78	76	6	486	24	20	31	23	1.98
7735--8063	116	2.8	116	88	3	457	25	20	31	23	1.98
14090--14124	16	2.2	16	100	0	70	25	20	17	37	1.94
20171--20285	60	1.9	60	85	8	162	35	2	25	36	1.70
20250--20441	30	6.4	29	80	7	172	37	2	22	36	1.69
20250--20441	60	3.2	58	81	6	206	37	2	22	36	1.69
20250--20441	90	2.1	88	85	4	251	37	2	22	36	1.69
22254--22305	17	3.1	16	88	5	68	59	3	0	36	1.16
22247--22303	23	2.5	22	82	8	60	57	3	0	38	1.16
22455--22530	23	3.3	23	73	10	66	21	10	21	47	1.80
22471--22695	23	9.9	23	80	2	195	28	13	16	42	1.86
29911--29952	21	2.0	21	100	0	84	33	33	9	23	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31793--31822	15	2.0	15	100	0	60	26	13	33	26	1.93
32663--32708	22	2.0	23	83	8	58	41	6	15	36	1.73
56584--56774	43	4.4	43	81	0	220	28	24	16	30	1.97
58868--58910	11	3.8	11	80	17	52	65	0	2	32	1.06
59285--59309	3	8.3	3	100	0	50	36	0	0	64	0.94
59422--59539	43	2.7	43	81	5	157	27	27	16	29	1.97
62145--62180	19	1.9	19	88	5	56	75	2	2	19	1.06
80308--80381	28	2.6	28	82	4	96	25	25	10	37	1.88
81199--81257	18	3.2	19	80	9	77	55	0	10	33	1.33
89621--89661	20	1.9	23	85	14	61	24	0	4	70	1.06
98568--98593	2	13.0	2	100	0	52	50	0	0	50	1.00
115335--115409	35	2.1	35	90	0	114	26	16	13	44	1.84
115709--115798	36	2.5	36	87	1	119	34	12	18	34	1.88
121232--121291	17	3.5	17	82	8	77	53	1	3	41	1.27
123125--123204	37	2.2	36	93	6	144	15	12	2	70	1.28
125410--125466	3	19.0	3	96	0	105	33	1	0	64	1.04
127143--127240	17	5.7	17	65	23	53	39	1	5	54	1.30
127141--127239	34	2.9	34	83	7	128	39	1	5	54	1.29
127173--127236	6	11.2	6	74	15	55	42	1	3	53	1.26
127141--127268	35	3.7	35	83	7	136	41	2	4	51	1.35
128284--128344	10	5.6	11	73	9	54	26	19	24	29	1.99
128286--128343	21	2.7	21	94	2	98	25	20	25	27	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
129177--129274	29	3.3	29	82	2	133	37	31	1	29	1.64
129303--129366	29	2.2	29	83	5	76	34	31	10	23	1.89
129319--129376	29	2.0	30	86	3	82	31	29	12	27	1.92
136471--136530	17	3.5	17	82	8	77	53	1	3	41	1.27
138364--138443	37	2.2	36	93	6	144	15	12	2	70	1.28
140649--140705	3	19.0	3	96	0	105	33	1	0	64	1.04
142382--142479	17	5.7	17	65	23	53	39	1	5	54	1.30
142380--142478	34	2.9	34	83	7	128	39	1	5	54	1.29
142412--142475	6	11.2	6	74	15	55	42	1	3	53	1.26
142380--142507	35	3.7	35	83	7	136	41	2	4	51	1.35
143523--143583	10	5.6	11	73	9	54	26	19	24	29	1.99
143525--143582	21	2.7	21	94	2	98	25	20	25	27	1.99
144416--144513	29	3.3	29	82	2	133	37	31	1	29	1.64
144542--144605	29	2.2	29	83	5	76	34	31	10	23	1.89
144558--144615	29	2.0	30	86	3	82	31	29	12	27	1.92
151336--151548	105	2.0	105	99	0	417	30	6	21	40	1.79
152788--152822	3	11.7	3	100	0	70	31	0	0	68	0.90
153608--153636	3	9.7	3	100	0	58	65	0	0	34	0.93
159227--159253	4	6.8	4	100	0	54	25	0	22	51	1.48
159838--159863	2	13.0	2	100	0	52	50	0	0	50	1.00
169702--169737	18	2.1	17	89	5	54	69	0	0	30	0.89
169803--169837	17	2.1	17	89	10	54	28	5	2	62	1.32
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
172493--172804	153	2.0	155	88	3	461	38	15	14	31	1.87
175291--175325	7	4.9	7	89	3	52	28	0	0	71	0.86
175291--175330	14	2.8	14	88	3	53	27	2	0	70	1.01
175450--175488	19	2.0	19	85	5	51	74	10	0	15	1.07
175848--175877	15	2.0	15	93	0	51	56	13	3	26	1.52
175871--175947	10	7.8	10	81	11	88	51	11	7	28	1.66
175862--175954	39	2.4	39	100	0	186	51	12	7	27	1.67
175860--175947	29	3.0	29	86	5	106	52	12	6	28	1.64

Tables:   1

The End!