Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NTFQ01015244.1 Kokia drynarioides strain JFW-HI SEQ_130289, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 101586
ACGTcount: A:0.33, C:0.16, G:0.17, T:0.33
Warning! 545 characters in sequence are not A, C, G, or T
Found at i:930 original size:21 final size:20
Alignment explanation
Indices: 906--971 Score: 62
Period size: 21 Copynumber: 3.2 Consensus size: 20
896 AAATAGCACG
906 AAAACAATAACCAAAACAGTA
1 AAAACAA-AACCAAAACAGTA
* * **
927 AAAACAACACAAAAACAACA
1 AAAACAAAACCAAAACAGTA
947 GAAAACAGAAACCAAAA-AGTA
1 -AAAACA-AAACCAAAACAGTA
968 AAAA
1 AAAA
972 GTAGCACCAA
Statistics
Matches: 35, Mismatches: 8, Indels: 5
0.73 0.17 0.10
Matches are distributed among these distances:
20 13 0.37
21 15 0.43
22 7 0.20
ACGTcount: A:0.71, C:0.18, G:0.06, T:0.05
Consensus pattern (20 bp):
AAAACAAAACCAAAACAGTA
Found at i:1698 original size:18 final size:18
Alignment explanation
Indices: 1677--1726 Score: 57
Period size: 18 Copynumber: 2.7 Consensus size: 18
1667 TATTCTAATT
1677 TTTAAAAATATTAAAAAA
1 TTTAAAAATATTAAAAAA
*
1695 TTTAAAAATTACT-AAAAA
1 TTTAAAAA-TATTAAAAAA
*
1713 TATAAAATATATTA
1 TTTAAAA-ATATTA
1727 TTATTCTAAC
Statistics
Matches: 26, Mismatches: 3, Indels: 5
0.76 0.09 0.15
Matches are distributed among these distances:
18 22 0.85
19 4 0.15
ACGTcount: A:0.62, C:0.02, G:0.00, T:0.36
Consensus pattern (18 bp):
TTTAAAAATATTAAAAAA
Found at i:1857 original size:20 final size:22
Alignment explanation
Indices: 1834--1875 Score: 61
Period size: 23 Copynumber: 2.0 Consensus size: 22
1824 GACTTAATTT
1834 TTATTTA-A-TTTTTATAATAA
1 TTATTTATACTTTTTATAATAA
1854 TTATTTATACTTTTTTATAATA
1 TTATTTATAC-TTTTTATAATA
1876 CATTTATTAA
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
20 7 0.37
21 1 0.05
23 11 0.58
ACGTcount: A:0.36, C:0.02, G:0.00, T:0.62
Consensus pattern (22 bp):
TTATTTATACTTTTTATAATAA
Found at i:1862 original size:13 final size:12
Alignment explanation
Indices: 1828--1889 Score: 51
Period size: 11 Copynumber: 5.3 Consensus size: 12
1818 AATATTGACT
*
1828 TAATTTTTAT-T
1 TAATTTTTATAA
1839 TAATTTTTATAA
1 TAATTTTTATAA
*
1851 TAATTATTTATAC
1 TAATT-TTTATAA
1864 T--TTTTTATAA
1 TAATTTTTATAA
*
1874 TACATTTAT-TAA
1 TA-ATTTTTATAA
1886 TAAT
1 TAAT
1890 CAAAATATTA
Statistics
Matches: 42, Mismatches: 4, Indels: 10
0.75 0.07 0.18
Matches are distributed among these distances:
10 7 0.17
11 14 0.33
12 10 0.24
13 11 0.26
ACGTcount: A:0.37, C:0.03, G:0.00, T:0.60
Consensus pattern (12 bp):
TAATTTTTATAA
Found at i:2099 original size:265 final size:265
Alignment explanation
Indices: 1622--2116 Score: 861
Period size: 265 Copynumber: 1.9 Consensus size: 265
1612 GTCCCTAAAT
1622 ATAAACAAAATATTATTTTGATGTTTTTAAACATTTCTTAATAATTATTCTAATTTTTAAAAATA
1 ATAAACAAAATATTATTTTGATGTTTTTAAACATTTCTTAATAATTATTCTAATTTTTAAAAATA
*
1687 TTAAAAAATTTAAAAATTACTAAAAATATAAAATATATTATTATTCTAACAATTAAATAAAAATT
66 TTAAAAAAATTAAAAATTACTAAAAATATAAAATATATTATTATTCTAACAATTAAATAAAAATT
* *
1752 TTATATCAACATTTACATTAATATTAAATGAAGACAAAAACATTTATTTTATTTAATATTAATAT
131 TTATATCAACATTTACATTAATATTAAATAAAAACAAAAACATTTATTTTATTTAATATTAATAT
* *
1817 AAATATTGACTTAATTTTTAT-TTAATT-TTTATAATAATTATTTATACTTTTTTATAATACATT
196 AAATATTGACGTAATTTTTATAATAATTATTTATAATAATTATTTATACTTTTTTATAATACATT
1880 TATTA
261 TATTA
* *
1885 ATAATCAAAATATTATTTTTTAT-TTTTTAAACATTTCTTAATAATTATTCTAATTTTTAAAAAT
1 ATAAACAAAATATTA-TTTTGATGTTTTTAAACATTTCTTAATAATTATTCTAATTTTTAAAAAT
*
1949 ATTAAAAACAAATTAAAAATTACTAAAAATATAAAATATATTATTATTCTAACAATTAAATTAAA
65 ATT-AAAA-AAATTAAAAATTACTAAAAATATAAAATATATTATTATTCTAACAATTAAATAAAA
*
2014 ATTTTATATCAATATTTACATTAATATTAAATAAAAACAAAAACATTTATTTTATTTAATATTAA
128 ATTTTATATCAACATTTACATTAATATTAAATAAAAACAAAAACATTTATTTTATTTAATATTAA
2079 TATAAATATTGACGTAATTTTTATAATAATTATTTATA
193 TATAAATATTGACGTAATTTTTATAATAATTATTTATA
2117 CTTTTTATAA
Statistics
Matches: 218, Mismatches: 9, Indels: 6
0.94 0.04 0.03
Matches are distributed among these distances:
263 58 0.27
264 10 0.05
265 139 0.64
266 5 0.02
267 6 0.03
ACGTcount: A:0.47, C:0.06, G:0.01, T:0.46
Consensus pattern (265 bp):
ATAAACAAAATATTATTTTGATGTTTTTAAACATTTCTTAATAATTATTCTAATTTTTAAAAATA
TTAAAAAAATTAAAAATTACTAAAAATATAAAATATATTATTATTCTAACAATTAAATAAAAATT
TTATATCAACATTTACATTAATATTAAATAAAAACAAAAACATTTATTTTATTTAATATTAATAT
AAATATTGACGTAATTTTTATAATAATTATTTATAATAATTATTTATACTTTTTTATAATACATT
TATTA
Found at i:2107 original size:24 final size:22
Alignment explanation
Indices: 2080--2128 Score: 53
Period size: 22 Copynumber: 2.1 Consensus size: 22
2070 TAATATTAAT
2080 ATAAATATTGACGTAATTTTTATA
1 ATAAATATTGA--TAATTTTTATA
* * *
2104 ATAATTATTTATACTTTTTATA
1 ATAAATATTGATAATTTTTATA
2126 ATA
1 ATA
2129 CATTTTAAAT
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
22 13 0.59
24 9 0.41
ACGTcount: A:0.41, C:0.04, G:0.04, T:0.51
Consensus pattern (22 bp):
ATAAATATTGATAATTTTTATA
Found at i:2184 original size:19 final size:21
Alignment explanation
Indices: 2160--2200 Score: 68
Period size: 21 Copynumber: 2.0 Consensus size: 21
2150 TAAATTTATT
2160 TTATT-AAAA-ATTAAAATAA
1 TTATTAAAAATATTAAAATAA
2179 TTATTAAAAATATTAAAATAA
1 TTATTAAAAATATTAAAATAA
2200 T
1 T
2201 ATTTTGTTTG
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
19 5 0.25
20 4 0.20
21 11 0.55
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (21 bp):
TTATTAAAAATATTAAAATAA
Found at i:13393 original size:3 final size:3
Alignment explanation
Indices: 13385--13414 Score: 51
Period size: 3 Copynumber: 10.0 Consensus size: 3
13375 GACTAGGGAG
*
13385 ATA ATA ATA ATA ATA ATT ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
13415 TTTTTTTTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
3 25 1.00
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (3 bp):
ATA
Found at i:19586 original size:2 final size:2
Alignment explanation
Indices: 19573--19607 Score: 52
Period size: 2 Copynumber: 16.5 Consensus size: 2
19563 AACTTGCATT
19573 TA TA TA TGA TA TA TA TA TA TA TA TA TA TA TCA TA T
1 TA TA TA T-A TA TA TA TA TA TA TA TA TA TA T-A TA T
19608 TACTGGGGCT
Statistics
Matches: 31, Mismatches: 0, Indels: 4
0.89 0.00 0.11
Matches are distributed among these distances:
2 27 0.87
3 4 0.13
ACGTcount: A:0.46, C:0.03, G:0.03, T:0.49
Consensus pattern (2 bp):
TA
Found at i:27628 original size:2 final size:2
Alignment explanation
Indices: 27623--27647 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
27613 ATATATATAT
27623 AC AC AC AC AC AC AC AC AC AC AC AC A
1 AC AC AC AC AC AC AC AC AC AC AC AC A
27648 TTTATTTGTA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.52, C:0.48, G:0.00, T:0.00
Consensus pattern (2 bp):
AC
Found at i:44073 original size:3 final size:3
Alignment explanation
Indices: 44065--44092 Score: 56
Period size: 3 Copynumber: 9.3 Consensus size: 3
44055 CTTTCTTTCT
44065 TTC TTC TTC TTC TTC TTC TTC TTC TTC T
1 TTC TTC TTC TTC TTC TTC TTC TTC TTC T
44093 CTGTGTAAGA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 25 1.00
ACGTcount: A:0.00, C:0.32, G:0.00, T:0.68
Consensus pattern (3 bp):
TTC
Found at i:47947 original size:12 final size:12
Alignment explanation
Indices: 47930--48031 Score: 61
Period size: 12 Copynumber: 8.8 Consensus size: 12
47920 ATAACATCCA
47930 AACAACAAAAAT
1 AACAACAAAAAT
* *
47942 AACAACCAAAAC
1 AACAACAAAAAT
* *
47954 AGCAGCAAAAAT
1 AACAACAAAAAT
*
47966 AACAGC--AAA-
1 AACAACAAAAAT
47975 AACAACAAAAAT
1 AACAACAAAAAT
* *
47987 AGC-ACCAAAAT
1 AACAACAAAAAT
* * *
47998 AATAGCAAAAAC
1 AACAACAAAAAT
*
48010 AAC-ACGAAAAT
1 AACAACAAAAAT
48021 AACAACCAAAA
1 AACAA-CAAAA
48032 CAATAAAAAA
Statistics
Matches: 64, Mismatches: 20, Indels: 11
0.67 0.21 0.12
Matches are distributed among these distances:
9 5 0.08
10 3 0.05
11 19 0.30
12 33 0.52
13 4 0.06
ACGTcount: A:0.67, C:0.22, G:0.06, T:0.06
Consensus pattern (12 bp):
AACAACAAAAAT
Found at i:47963 original size:24 final size:21
Alignment explanation
Indices: 47916--47996 Score: 85
Period size: 24 Copynumber: 3.8 Consensus size: 21
47906 AAAACGCATA
*
47916 AAAAATAACATCC-AAACAAC
1 AAAAATAACAACCAAAACAAC
47936 AAAAATAACAACCAAAACAGCAGC
1 AAAAATAACAACCAAAACA--A-C
* *
47960 AAAAATAACAGCAAAAACAAC
1 AAAAATAACAACCAAAACAAC
*
47981 AAAAATAGC-ACCAAAA
1 AAAAATAACAACCAAAA
47997 TAATAGCAAA
Statistics
Matches: 51, Mismatches: 6, Indels: 8
0.78 0.09 0.12
Matches are distributed among these distances:
20 17 0.33
21 14 0.27
22 1 0.02
23 1 0.02
24 18 0.35
ACGTcount: A:0.67, C:0.22, G:0.05, T:0.06
Consensus pattern (21 bp):
AAAAATAACAACCAAAACAAC
Found at i:47997 original size:32 final size:32
Alignment explanation
Indices: 47942--48031 Score: 99
Period size: 32 Copynumber: 2.7 Consensus size: 32
47932 CAACAAAAAT
* * *
47942 AACAACCAAAACAGCAGCAAAAATAACAGCAAA
1 AACAACAAAAATAGCA-CCAAAATAACAGCAAA
*
47975 AACAACAAAAATAGCACCAAAATAATAGCAAA
1 AACAACAAAAATAGCACCAAAATAACAGCAAA
*
48007 AACAACACGAAAATAACAACCAAAA
1 AACAACA--AAAATAGC-ACCAAAA
48032 CAATAAAAAA
Statistics
Matches: 49, Mismatches: 5, Indels: 4
0.84 0.09 0.07
Matches are distributed among these distances:
32 21 0.43
33 14 0.29
34 7 0.14
35 7 0.14
ACGTcount: A:0.66, C:0.22, G:0.07, T:0.06
Consensus pattern (32 bp):
AACAACAAAAATAGCACCAAAATAACAGCAAA
Found at i:48005 original size:44 final size:45
Alignment explanation
Indices: 47916--48031 Score: 119
Period size: 44 Copynumber: 2.6 Consensus size: 45
47906 AAAACGCATA
* * *
47916 AAAAATAACATC-CAAACAACAAAAATAACAACCAAAACAGCAGC
1 AAAAATAACAGCAAAAACAACAAAAATAACAACCAAAACAACAGC
* * *
47960 AAAAATAACAGCAAAAACAACAAAAATAGC-ACCAAAATAATAGC
1 AAAAATAACAGCAAAAACAACAAAAATAACAACCAAAACAACAGC
* * *
48004 AAAAACAACACGAAAATAACAACCAAAA
1 AAAAATAACA-GCAAA-AACAACAAAAA
48032 CAATAAAAAA
Statistics
Matches: 60, Mismatches: 9, Indels: 4
0.82 0.12 0.05
Matches are distributed among these distances:
44 31 0.52
45 19 0.32
46 10 0.17
ACGTcount: A:0.66, C:0.22, G:0.05, T:0.07
Consensus pattern (45 bp):
AAAAATAACAGCAAAAACAACAAAAATAACAACCAAAACAACAGC
Found at i:48043 original size:35 final size:32
Alignment explanation
Indices: 47916--48051 Score: 89
Period size: 35 Copynumber: 4.1 Consensus size: 32
47906 AAAACGCATA
* *
47916 AAAAATAACATCC-AAACAACAAAAATAACAAC
1 AAAAATAACA-CCAAAACAATAAAAAAAACAAC
* * * *
47948 CAAAACAGCAGC-AAA-AATAACAGCAAAAACAAC
1 AAAAATAACACCAAAACAATAA-A--AAAAACAAC
* * **
47981 AAAAATAGCACCAAAATAATAGCAAAAACAAC
1 AAAAATAACACCAAAACAATAAAAAAAACAAC
*
48013 ACGAAAATAACAACCAAAACAATAAAAAAAACACC
1 A--AAAATAAC-ACCAAAACAATAAAAAAAACAAC
48048 AAAA
1 AAAA
48052 CCTATTTAAA
Statistics
Matches: 80, Mismatches: 16, Indels: 15
0.72 0.14 0.14
Matches are distributed among these distances:
30 4 0.05
31 5 0.06
32 17 0.21
33 20 0.25
34 10 0.12
35 24 0.30
ACGTcount: A:0.68, C:0.21, G:0.04, T:0.07
Consensus pattern (32 bp):
AAAAATAACACCAAAACAATAAAAAAAACAAC
Found at i:48437 original size:3 final size:3
Alignment explanation
Indices: 48429--48458 Score: 51
Period size: 3 Copynumber: 10.0 Consensus size: 3
48419 TCCATCAATA
*
48429 TAT TAT TAT TGT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
48459 ATAAATATAA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
3 25 1.00
ACGTcount: A:0.30, C:0.00, G:0.03, T:0.67
Consensus pattern (3 bp):
TAT
Found at i:48633 original size:30 final size:30
Alignment explanation
Indices: 48573--48633 Score: 70
Period size: 30 Copynumber: 2.0 Consensus size: 30
48563 ATGGGTGGAG
** *
48573 ATATTATTTTAGTAAATAAATTATTTTTTT
1 ATATTATTTTAGTAAATAAACCATTATTTT
*
48603 ATATTGTTTTAGTAAA-AAACCCATTATTTT
1 ATATTATTTTAGTAAATAAA-CCATTATTTT
48633 A
1 A
48634 AGAGAATTTT
Statistics
Matches: 26, Mismatches: 4, Indels: 2
0.81 0.12 0.06
Matches are distributed among these distances:
29 3 0.12
30 23 0.88
ACGTcount: A:0.38, C:0.05, G:0.05, T:0.52
Consensus pattern (30 bp):
ATATTATTTTAGTAAATAAACCATTATTTT
Found at i:49256 original size:2 final size:2
Alignment explanation
Indices: 49249--49285 Score: 74
Period size: 2 Copynumber: 18.5 Consensus size: 2
49239 ATGAAAAAGT
49249 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
49286 TAAGATTGTG
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 35 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:53675 original size:18 final size:16
Alignment explanation
Indices: 53631--53680 Score: 59
Period size: 16 Copynumber: 3.1 Consensus size: 16
53621 AGGATGAGAA
*
53631 TAAATTTTAAATTAAA
1 TAAATTTTAAATTAAT
53647 TAAA-TTT-AATTAAT
1 TAAATTTTAAATTAAT
53661 TGAAAATTTTAAATTAAT
1 T--AAATTTTAAATTAAT
53679 TA
1 TA
53681 CATAACTGAA
Statistics
Matches: 29, Mismatches: 1, Indels: 8
0.76 0.03 0.21
Matches are distributed among these distances:
14 7 0.24
15 3 0.10
16 8 0.28
17 3 0.10
18 8 0.28
ACGTcount: A:0.52, C:0.00, G:0.02, T:0.46
Consensus pattern (16 bp):
TAAATTTTAAATTAAT
Found at i:54546 original size:37 final size:37
Alignment explanation
Indices: 54500--54577 Score: 102
Period size: 37 Copynumber: 2.1 Consensus size: 37
54490 GGGCATGTCG
* ** *
54500 AACATGCAAATCGGGTAATATCATGAATGACATGTTT
1 AACAAGCAAATCGAATAATATCATGAAGGACATGTTT
* *
54537 AACAAGCAAATCGAATAATATCATGTAGGGCATGTTT
1 AACAAGCAAATCGAATAATATCATGAAGGACATGTTT
54574 AACA
1 AACA
54578 TGTAATCAAA
Statistics
Matches: 35, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
37 35 1.00
ACGTcount: A:0.41, C:0.14, G:0.18, T:0.27
Consensus pattern (37 bp):
AACAAGCAAATCGAATAATATCATGAAGGACATGTTT
Found at i:67117 original size:24 final size:26
Alignment explanation
Indices: 67090--67138 Score: 75
Period size: 24 Copynumber: 2.0 Consensus size: 26
67080 GGGCTTAATT
67090 GATTTTTTTTTATTTT-C-AATAAGA
1 GATTTTTTTTTATTTTACTAATAAGA
*
67114 GATTTTTTTTTTTTTTACTAATAAG
1 GATTTTTTTTTATTTTACTAATAAG
67139 CCTTATTAAT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
24 15 0.68
25 1 0.05
26 6 0.27
ACGTcount: A:0.27, C:0.04, G:0.08, T:0.61
Consensus pattern (26 bp):
GATTTTTTTTTATTTTACTAATAAGA
Found at i:69098 original size:55 final size:54
Alignment explanation
Indices: 69033--69174 Score: 146
Period size: 55 Copynumber: 2.6 Consensus size: 54
69023 TTGGTGAAAT
* * ** * * *
69033 TGTAATATTTGAGAAATAGGGGCAAAATTGTAAAATCAATAAAAATAAGGG-GAAC
1 TGTAAAATTTGAAAAATAAAGGCAAAACTGT-AAATCAA-AAAAACAAGGGAAAAC
*
69088 TGTAAAATTTGAAAAATAAAGGCAAAACTGTAAATCTAAAAAACAAGGGAAAAC
1 TGTAAAATTTGAAAAATAAAGGCAAAACTGTAAATCAAAAAAACAAGGGAAAAC
* * *
69142 TGTAAAATCT-AAAAA-AAAGGTAAAACTATAAAT
1 TGTAAAATTTGAAAAATAAAGGCAAAACTGTAAAT
69175 TTTGGAAAAT
Statistics
Matches: 75, Mismatches: 11, Indels: 5
0.82 0.12 0.05
Matches are distributed among these distances:
52 16 0.21
53 15 0.20
54 18 0.24
55 26 0.35
ACGTcount: A:0.55, C:0.07, G:0.16, T:0.22
Consensus pattern (54 bp):
TGTAAAATTTGAAAAATAAAGGCAAAACTGTAAATCAAAAAAACAAGGGAAAAC
Found at i:69103 original size:27 final size:26
Alignment explanation
Indices: 69061--69237 Score: 115
Period size: 27 Copynumber: 6.6 Consensus size: 26
69051 GGGGCAAAAT
* *
69061 TGTAAAATCAATAAAAATAAGGGGAAC
1 TGTAAAATCTA-AAAAATAAGGGAAAC
* * *
69088 TGTAAAATTTGAAAAATAAAGGCAAAAC
1 TGTAAAATCTAAAAAAT-AAGG-GAAAC
*
69116 TGT-AAATCTAAAAAACAAGGGAAAAC
1 TGTAAAATCTAAAAAATAAGGG-AAAC
*
69142 TGTAAAATCTAAAAAA-AAGGTAAAAC
1 TGTAAAATCTAAAAAATAAGG-GAAAC
* * * ** *
69168 TATAAATTTTGGAAAATAGGGGAAAAC
1 TGTAAAATCTAAAAAATAAGGG-AAAC
* **
69195 TATAAAATCTGGAAAATAAGGGAAAC
1 TGTAAAATCTAAAAAATAAGGGAAAC
* *
69221 TTGTAAAAACTGAAAAA
1 -TGTAAAATCTAAAAAA
69238 CAAGCGTAGA
Statistics
Matches: 119, Mismatches: 23, Indels: 16
0.75 0.15 0.10
Matches are distributed among these distances:
26 40 0.34
27 73 0.61
28 6 0.05
ACGTcount: A:0.56, C:0.07, G:0.16, T:0.20
Consensus pattern (26 bp):
TGTAAAATCTAAAAAATAAGGGAAAC
Found at i:69128 original size:26 final size:26
Alignment explanation
Indices: 69053--69173 Score: 111
Period size: 26 Copynumber: 4.5 Consensus size: 26
69043 GAGAAATAGG
* *
69053 GGCAAAATTGTAAAATCAATAAAAATAA
1 GGCAAAACTGTAAAATC--TAAAAAAAA
** *
69081 GG-GGAACTGTAAAATTTGAAAAATAAA
1 GGCAAAACTGTAAAATCT-AAAAA-AAA
69108 GGCAAAACTGT-AAATCTAAAAAACAA
1 GGCAAAACTGTAAAATCTAAAAAA-AA
*
69134 GGGAAAACTGTAAAATCTAAAAAAAA
1 GGCAAAACTGTAAAATCTAAAAAAAA
* *
69160 GGTAAAACTATAAA
1 GGCAAAACTGTAAA
69174 TTTTGGAAAA
Statistics
Matches: 77, Mismatches: 11, Indels: 12
0.77 0.11 0.12
Matches are distributed among these distances:
25 2 0.03
26 36 0.47
27 31 0.40
28 8 0.10
ACGTcount: A:0.58, C:0.08, G:0.15, T:0.19
Consensus pattern (26 bp):
GGCAAAACTGTAAAATCTAAAAAAAA
Found at i:69304 original size:28 final size:27
Alignment explanation
Indices: 69085--69322 Score: 144
Period size: 27 Copynumber: 8.7 Consensus size: 27
69075 AAATAAGGGG
* * * *
69085 AACTGTAAAATTTGAAAAATAAAGGCAA
1 AACTATAAAATCTGAAAAA-CAAGGGAA
* *
69113 AACTGT-AAATCTAAAAAACAAGGGAA
1 AACTATAAAATCTGAAAAACAAGGGAA
* * *
69139 AACTGTAAAATCT-AAAAAAAAGGTAA
1 AACTATAAAATCTGAAAAACAAGGGAA
* * * * *
69165 AACTATAAATTTTGGAAAATAGGGGAA
1 AACTATAAAATCTGAAAAACAAGGGAA
* *
69192 AACTATAAAATCTGGAAAATAAGGG-A
1 AACTATAAAATCTGAAAAACAAGGGAA
* * * *
69218 AACTTGTAAAAACTGAAAAACAAGCGTAG
1 AAC-TATAAAATCTGAAAAACAAG-GGAA
* * *
69247 AAC-AGTAAAATTTGAAAAGTC-AGGAAAA
1 AACTA-TAAAATCTGAAAA-ACAAGG-GAA
*
69275 AACTATAAAATCTGAAAAACAGGGGCAA
1 AACTATAAAATCTGAAAAACAAGGG-AA
* *
69303 AACTATAAAATATAAAAAAC
1 AACTATAAAATCTGAAAAAC
69323 TAGTGAAACA
Statistics
Matches: 165, Mismatches: 34, Indels: 22
0.75 0.15 0.10
Matches are distributed among these distances:
26 37 0.22
27 65 0.39
28 58 0.35
29 5 0.03
ACGTcount: A:0.56, C:0.09, G:0.16, T:0.19
Consensus pattern (27 bp):
AACTATAAAATCTGAAAAACAAGGGAA
Found at i:74979 original size:3 final size:3
Alignment explanation
Indices: 74971--74995 Score: 50
Period size: 3 Copynumber: 8.3 Consensus size: 3
74961 TATATAATTT
74971 TAA TAA TAA TAA TAA TAA TAA TAA T
1 TAA TAA TAA TAA TAA TAA TAA TAA T
74996 CAAATATTAA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 22 1.00
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (3 bp):
TAA
Found at i:77841 original size:29 final size:28
Alignment explanation
Indices: 77809--78052 Score: 183
Period size: 29 Copynumber: 8.5 Consensus size: 28
77799 ATCGAGGTCA
* * *
77809 AAAATGGAATTTTGGAAAGCTCGGGGGT
1 AAAATGGAATTTTTGAAAGTTTGGGGGT
* * *
77837 AAAAATGTAATTTTTAAAAGTTTAGGGGT
1 -AAAATGGAATTTTTGAAAGTTTGGGGGT
77866 AAAATGGTAATTTTTGAAAGTTTGGGGGT
1 AAAATGG-AATTTTTGAAAGTTTGGGGGT
* *
77895 AAAATGGAATTTTTGAAGGTTTGAGGGT
1 AAAATGGAATTTTTGAAAGTTTGGGGGT
* * **
77923 AAAATGGTAATTTTTAGTAAA-ATCGGGGAC
1 AAAATGG-AATTTTT-G-AAAGTTTGGGGGT
* *
77953 AAAAT-GAATTTTTGGAAAGTTTTGGGAT
1 AAAATGGAATTTTT-GAAAGTTTGGGGGT
**
77981 AAAATGGTAATTTTTGGTGAAA---TCAGGGT
1 AAAATGG-AA-TTTT--TGAAAGTTTGGGGGT
* *
78010 CAAAATGGAATTTTGGAAAGTTTAGGGGT
1 -AAAATGGAATTTTTGAAAGTTTGGGGGT
*
78039 AAAATGGTATTTTT
1 AAAATGGAATTTTT
78053 TGGTGAAATC
Statistics
Matches: 171, Mismatches: 30, Indels: 29
0.74 0.13 0.13
Matches are distributed among these distances:
26 4 0.02
27 3 0.02
28 66 0.39
29 68 0.40
30 19 0.11
31 6 0.04
32 4 0.02
33 1 0.01
ACGTcount: A:0.35, C:0.02, G:0.27, T:0.35
Consensus pattern (28 bp):
AAAATGGAATTTTTGAAAGTTTGGGGGT
Found at i:78102 original size:59 final size:59
Alignment explanation
Indices: 77832--78112 Score: 276
Period size: 58 Copynumber: 4.8 Consensus size: 59
77822 GGAAAGCTCG
* * * ** *
77832 GGGGTAAAAATGTAATTTTT-AAAAGTTTAGGGGTAAAATGGTAA-TTTT--TGAAAGTTTG
1 GGGGTCAAAATGGAATTTTTGGAAAGTTTTTGGGTAAAATGGTAATTTTTGGTGAAA---TC
* ** * *
77890 GGGGT-AAAATGGAATTTTT-GAAGGTTTGAGGGTAAAATGGTAATTTTTAGTAAAATC
1 GGGGTCAAAATGGAATTTTTGGAAAGTTTTTGGGTAAAATGGTAATTTTTGGTGAAATC
*
77947 GGGGACAAAAT-GAATTTTTGGAAAG-TTTTGGGATAAAATGGTAATTTTTGGTGAAATC
1 GGGGTCAAAATGGAATTTTTGGAAAGTTTTTGGG-TAAAATGGTAATTTTTGGTGAAATC
* ** *
78005 AGGGTCAAAATGGAA-TTTTGGAAAGTTTAGGGGTAAAATGGTATTTTTTGGTGAAATC
1 GGGGTCAAAATGGAATTTTTGGAAAGTTTTTGGGTAAAATGGTAATTTTTGGTGAAATC
* * *
78063 GGGAGTCAAAATGGAA-TTTTGAAAAGTTTTTGGGCAAAATTGTAATTTTT
1 GGG-GTCAAAATGGAATTTTTGGAAAGTTTTTGGGTAAAATGGTAATTTTT
78113 ACAAAGTTCA
Statistics
Matches: 189, Mismatches: 25, Indels: 17
0.82 0.11 0.07
Matches are distributed among these distances:
57 51 0.27
58 86 0.46
59 48 0.25
60 4 0.02
ACGTcount: A:0.35, C:0.02, G:0.27, T:0.36
Consensus pattern (59 bp):
GGGGTCAAAATGGAATTTTTGGAAAGTTTTTGGGTAAAATGGTAATTTTTGGTGAAATC
Found at i:78812 original size:90 final size:88
Alignment explanation
Indices: 78658--78837 Score: 342
Period size: 90 Copynumber: 2.0 Consensus size: 88
78648 ATTTTTTTTC
78658 CCCTCATTTTTACTTCCTTTTTTTTAAAAAAATAAATTTGAAACTCTCATCTCTCTCTCCCCTCT
1 CCCTCATTTTTACTTCCTTTTTTTTAAAAAAATAAATTTGAAACTCTCATCTCTCTCTCCCCTCT
78723 AAAGTTCGACCAACCTCCGACCT
66 AAAGTTCGACCAACCTCCGACCT
78746 CCNCTCATTTTTACTTCCTTTTTTTTAAAAAAAATAAATTTGAAACTCTCATCTCTCTCTCCCCT
1 CC-CTCATTTTTACTTCCTTTTTTTT-AAAAAAATAAATTTGAAACTCTCATCTCTCTCTCCCCT
78811 CTAAAGTTCGACCAACCTCCGACCT
64 CTAAAGTTCGACCAACCTCCGACCT
78836 CC
1 CC
78838 GATCGTTATC
Statistics
Matches: 90, Mismatches: 0, Indels: 2
0.98 0.00 0.02
Matches are distributed among these distances:
88 2 0.02
89 23 0.26
90 65 0.72
ACGTcount: A:0.26, C:0.32, G:0.04, T:0.37
Consensus pattern (88 bp):
CCCTCATTTTTACTTCCTTTTTTTTAAAAAAATAAATTTGAAACTCTCATCTCTCTCTCCCCTCT
AAAGTTCGACCAACCTCCGACCT
Found at i:80104 original size:17 final size:16
Alignment explanation
Indices: 80078--80156 Score: 68
Period size: 17 Copynumber: 4.6 Consensus size: 16
80068 TTTGGACATT
*
80078 AATTTAAAATTAAATTTA
1 AATTTAAATTTAAA--TA
* *
80096 AACTTAAATTTATGATA
1 AATTTAAATTTA-AATA
*
80113 AATTTAAATTTTAAGTA
1 AATTTAAA-TTTAAATA
*
80130 AATTTAAACTTAAAATA
1 AATTTAAA-TTTAAATA
80147 AATTTAAATT
1 AATTTAAATT
80157 CTGTTGGGTA
Statistics
Matches: 50, Mismatches: 9, Indels: 6
0.77 0.14 0.09
Matches are distributed among these distances:
16 2 0.04
17 33 0.66
18 14 0.28
19 1 0.02
ACGTcount: A:0.52, C:0.03, G:0.03, T:0.43
Consensus pattern (16 bp):
AATTTAAATTTAAATA
Found at i:80120 original size:6 final size:6
Alignment explanation
Indices: 80078--80156 Score: 58
Period size: 6 Copynumber: 13.7 Consensus size: 6
80068 TTTGGACATT
* * * *
80078 AATTTA AAATTA AATTTA AACTTA AATTT- -ATGATA AATTTA AATTTT
1 AATTTA AATTTA AATTTA AATTTA AATTTA AAT-TTA AATTTA AATTTA
* * *
80125 AA-GTA AATTTA AACTTA AA-ATA AATTTA AATT
1 AATTTA AATTTA AATTTA AATTTA AATTTA AATT
80157 CTGTTGGGTA
Statistics
Matches: 55, Mismatches: 13, Indels: 10
0.71 0.17 0.13
Matches are distributed among these distances:
4 2 0.04
5 8 0.15
6 43 0.78
7 2 0.04
ACGTcount: A:0.52, C:0.03, G:0.03, T:0.43
Consensus pattern (6 bp):
AATTTA
Found at i:80440 original size:132 final size:132
Alignment explanation
Indices: 80203--80460 Score: 455
Period size: 132 Copynumber: 2.0 Consensus size: 132
80193 CCCTCTTTGT
80203 TCGTTGTTGTGTAACAGGAACGGAGCAAAGACCCAAAAGGATGCCCAATTTGTCAGGTCCGATCT
1 TCGTTGTTGTGTAACAGGAACGGAGCAAAGACCCAAAAGGATGCCCAATTTGTCAGGTCCGATCT
* * *
80268 TTTTTACGCTCTTTCTTCAACTGGTTCGCTTTTCGTCTTGTCAGTCGTCCAATCTTCGCCGTATT
66 TTTTGACGCTCTTTCTTCAACTGGTTCACCTTTCGTCTTGTCAGTCGTCCAATCTTCGCCGTATT
80333 AC
131 AC
*
80335 TCGTTGTTGTGTAACAGGAACGGAGCAAAGACCTAAAAGGATGCCCAATTTGTCAGGTCTC-ATC
1 TCGTTGTTGTGTAACAGGAACGGAGCAAAGACCCAAAAGGATGCCCAATTTGTCAGGTC-CGATC
*
80399 TTTTTGACGCTCTTTCTTCAACTGGTTCACCTTTCGTCTTGTCAGTCTTCCAATCTTCGCCG
65 TTTTTGACGCTCTTTCTTCAACTGGTTCACCTTTCGTCTTGTCAGTCGTCCAATCTTCGCCG
80461 CATTCACCTT
Statistics
Matches: 120, Mismatches: 5, Indels: 2
0.94 0.04 0.02
Matches are distributed among these distances:
132 119 0.99
133 1 0.01
ACGTcount: A:0.21, C:0.25, G:0.20, T:0.34
Consensus pattern (132 bp):
TCGTTGTTGTGTAACAGGAACGGAGCAAAGACCCAAAAGGATGCCCAATTTGTCAGGTCCGATCT
TTTTGACGCTCTTTCTTCAACTGGTTCACCTTTCGTCTTGTCAGTCGTCCAATCTTCGCCGTATT
AC
Found at i:80984 original size:206 final size:202
Alignment explanation
Indices: 80634--81216 Score: 726
Period size: 201 Copynumber: 2.9 Consensus size: 202
80624 CTTCTTAGTG
* * * * * *
80634 TCTCATCAGGAAGATGACTGCATCACTTGTTTTAATTCGCTTCTTTGTATCTCATCAAGAAGGCA
1 TCTCATTAAGAAGATGACTGCATCACTTGTTTCAATTCGCTTCTCTGTATCTCATCAAGAAGACG
* * *
80699 AATTTGGTCCACTTCTCGGTATCTCATCAAGAAGCTAACCATTTTATTACTTCGACTTGCTTCTC
66 AATTTGGTCCACTTCTCAGTATCTCATCAGGAAGCTAACCATTTTATTGCTTCGACTTGCTTCTC
* * *
80764 TGTATCTTATCAGGAAGCTGGGGTTCGAAGATTTGCTCACATC-GAGCGT-GAGTCTAATTTGGT
131 AGTATCTCATCAGGAAGCTGGGGTTCGAAGATTTGCTCACATCTGAGCCTCGAG------TTGGT
* *
80827 TTTCTTCTCAATA
190 ATACTTCTCAATA
* *
80840 TCTCATTAAGAAGATGACTGCATCGCTTGTTTCAATCCGCTTCTCTGTATCTCATCAAGAAGACG
1 TCTCATTAAGAAGATGACTGCATCACTTGTTTCAATTCGCTTCTCTGTATCTCATCAAGAAGACG
* **
80905 AATTTGATCCACTTCTCAGTATCTCATCAGGAAGCTAACCATTTTATTGCTTTAACTTGCTTCTC
66 AATTTGGTCCACTTCTCAGTATCTCATCAGGAAGCTAACCATTTTATTGCTTCGACTTGCTTCTC
*
80970 AGTATCTCATCAGGAAGCTGGGGTTCGAAGATTTGCTCGCA-CTGAGCCTCGAGTTGGTATACTT
131 AGTATCTCATCAGGAAGCTGGGGTTCGAAGATTTGCTCACATCTGAGCCTCGAGTTGGTATACTT
**
81034 CTCTGTA
196 CTCAATA
* * * ** * *
81041 TCTCATT-AGAAAGATGACTGCCTCACTTATCTCAATTCATTTCTCTATATCTCATCAGGAAGAC
1 TCTCATTAAG-AAGATGACTGCATCACTTGTTTCAATTCGCTTCTCTGTATCTCATCAAGAAGAC
* * * * * **
81105 GAATTTGGTCCACCTCCCAGTATCTTATTAGGAAGCTGACCATTTTATTGCTTCGACCCGCTTCT
65 GAATTTGGTCCACTTCTCAGTATCTCATCAGGAAGCTAACCATTTTATTGCTTCGACTTGCTTCT
* *
81170 CAGTATCTCATCAGGAAGCTAGGGTTCAAAGATTTGCTCACAT-TGAG
130 CAGTATCTCATCAGGAAGCTGGGGTTCGAAGATTTGCTCACATCTGAG
81217 TCTTGTTTCT
Statistics
Matches: 329, Mismatches: 44, Indels: 13
0.85 0.11 0.03
Matches are distributed among these distances:
200 2 0.01
201 164 0.50
205 1 0.00
206 159 0.48
207 3 0.01
ACGTcount: A:0.25, C:0.23, G:0.18, T:0.35
Consensus pattern (202 bp):
TCTCATTAAGAAGATGACTGCATCACTTGTTTCAATTCGCTTCTCTGTATCTCATCAAGAAGACG
AATTTGGTCCACTTCTCAGTATCTCATCAGGAAGCTAACCATTTTATTGCTTCGACTTGCTTCTC
AGTATCTCATCAGGAAGCTGGGGTTCGAAGATTTGCTCACATCTGAGCCTCGAGTTGGTATACTT
CTCAATA
Found at i:81326 original size:123 final size:123
Alignment explanation
Indices: 81107--81378 Score: 445
Period size: 123 Copynumber: 2.2 Consensus size: 123
81097 AGGAAGACGA
* * * * *
81107 ATTTGGTCCACCTCCCAGTATCTTATTAGGAAGCTGACCATTTTATTGCTTCGACCCGCTTCTCA
1 ATTTGGTCTACTTCTCAGTATCTCATTAGGAAGATGACCATTTTATTGCTTCGACCCGCTTCTCA
* *
81172 GTATCTCATCAGGAAGCTAGGGTTCAAAGATTTGCTCACATTGAGTCTTGTTTCTTTG
66 GTATCTCATCAGGAAGCTAGGGTTCAAAGATTTGCTCACATTGAGCCTTGTTTCATTG
*
81230 ATTTGGTCTACTTCTCAGTATCTCATTAGGAATATGACCATTTTATTGCTTCGACCCGCTTCTCA
1 ATTTGGTCTACTTCTCAGTATCTCATTAGGAAGATGACCATTTTATTGCTTCGACCCGCTTCTCA
* * *
81295 GTATCTCATCAGGAAGCTGGGGTTCGAAGATTTGCTCACTTTGAGCCTTGTTTCATTG
66 GTATCTCATCAGGAAGCTAGGGTTCAAAGATTTGCTCACATTGAGCCTTGTTTCATTG
81353 ATTTGGTCTACTTCTCAGTATCTCAT
1 ATTTGGTCTACTTCTCAGTATCTCAT
81379 CAGAAATACG
Statistics
Matches: 138, Mismatches: 11, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
123 138 1.00
ACGTcount: A:0.21, C:0.23, G:0.18, T:0.38
Consensus pattern (123 bp):
ATTTGGTCTACTTCTCAGTATCTCATTAGGAAGATGACCATTTTATTGCTTCGACCCGCTTCTCA
GTATCTCATCAGGAAGCTAGGGTTCAAAGATTTGCTCACATTGAGCCTTGTTTCATTG
Found at i:82186 original size:44 final size:45
Alignment explanation
Indices: 82133--82218 Score: 122
Period size: 44 Copynumber: 1.9 Consensus size: 45
82123 TTAGTTCCAG
*
82133 GACGCCCTTTGCGGGTTTTCATCTTGAA-CC-CTTTTTTTTATCGA
1 GACGCCCTTTGCGGGCTTTCATCTT-AATCCTCTTTTTTTTATCGA
*
82177 GACGTCCTTTGCGGGCTTTCATCTTAATTCCTCTTTTTTTTA
1 GACGCCCTTTGCGGGCTTTCATCTTAA-TCCTCTTTTTTTTA
82219 GGCGAAGTAT
Statistics
Matches: 37, Mismatches: 2, Indels: 4
0.86 0.05 0.09
Matches are distributed among these distances:
43 2 0.05
44 23 0.62
45 2 0.05
46 10 0.27
ACGTcount: A:0.13, C:0.24, G:0.16, T:0.47
Consensus pattern (45 bp):
GACGCCCTTTGCGGGCTTTCATCTTAATCCTCTTTTTTTTATCGA
Found at i:83595 original size:18 final size:18
Alignment explanation
Indices: 83572--83607 Score: 72
Period size: 18 Copynumber: 2.0 Consensus size: 18
83562 ACCTACTCAC
83572 TTTAATCATCAAGGCTAA
1 TTTAATCATCAAGGCTAA
83590 TTTAATCATCAAGGCTAA
1 TTTAATCATCAAGGCTAA
83608 AGTGGCAAGA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.39, C:0.17, G:0.11, T:0.33
Consensus pattern (18 bp):
TTTAATCATCAAGGCTAA
Found at i:86971 original size:87 final size:88
Alignment explanation
Indices: 86874--87062 Score: 210
Period size: 87 Copynumber: 2.2 Consensus size: 88
86864 TACCCGGGGT
* *
86874 AAAATGGTAA-TTTTG-GACCCTCGGAGGCAAAATGGTAATTTTTGGCGAAATCGA-GGTCAAAA
1 AAAATGGTAATTTTTGAAACCCTAGG-GGCAAAATGGTAATTTTTGGCGAAAT-GAGGGTC-AAA
86936 ATGGAATTTTGGAAAGTTCGAAGGTA
63 ATGGAATTTTGGAAAGTTCGAAGGTA
*** * * *
86962 AAAAT-GTAATTTTTGAAAGTTTAGGGGTAAAATGGTAATTTTTGGTGAAATTAGGGTCAAAATG
1 AAAATGGTAATTTTTGAAACCCTAGGGGCAAAATGGTAATTTTTGGCGAAATGAGGGTCAAAATG
* *
87026 GAATTTTGGAAGGTTCG-GGAGT-
66 GAATTTTGGAAAGTTCGAAG-GTA
87048 AAAATGGTAATTTTT
1 AAAATGGTAATTTTT
87063 AGTGAAATCG
Statistics
Matches: 86, Mismatches: 10, Indels: 11
0.80 0.09 0.10
Matches are distributed among these distances:
86 6 0.07
87 38 0.44
88 38 0.44
89 4 0.05
ACGTcount: A:0.35, C:0.06, G:0.27, T:0.32
Consensus pattern (88 bp):
AAAATGGTAATTTTTGAAACCCTAGGGGCAAAATGGTAATTTTTGGCGAAATGAGGGTCAAAATG
GAATTTTGGAAAGTTCGAAGGTA
Found at i:87003 original size:28 final size:28
Alignment explanation
Indices: 86933--87382 Score: 109
Period size: 30 Copynumber: 15.6 Consensus size: 28
86923 ATCGAGGTCA
* * *
86933 AAAATGG-AATTTTGGAAAGTTCGAAGGT
1 AAAATGGTAATTTTTGAAAGTTAG-GGGT
86961 AAAAAT-GTAATTTTTGAAAGTTTAGGGGT
1 -AAAATGGTAATTTTTGAAAG-TTAGGGGT
86990 AAAATGGTAATTTTTGGTGAAA-TTA-GGGT
1 AAAATGGTAA-TTTT--TGAAAGTTAGGGGT
* * *
87019 CAAAATGG-AATTTTGGAAGGTTCGGGAGT
1 -AAAATGGTAATTTTTGAAAGTTAGGG-GT
* *
87048 AAAATGGTAATTTTTAGTGAAA--TCGAGGT
1 AAAATGGTAA-TTTT--TGAAAGTTAGGGGT
* *** * *
87077 CAAGA-CAAAATTTTGGAAAGTTCGGGGAT
1 -AAAATGGTAATTTTTGAAAGTTAGGGG-T
87106 AAAATGGTAATTTTTGGTGAAA-TTA-GGGT
1 AAAATGGTAA-TTTT--TGAAAGTTAGGGGT
* * *
87135 AATAAT-GAAATTTTGGAAAGTTTGGGGT
1 AA-AATGGTAATTTTTGAAAGTTAGGGGT
* * *
87163 AAAATGGTAATTTTTGTGAAA--TCGAGAT
1 AAAATGGTAA-TTTT-TGAAAGTTAGGGGT
* * *
87191 CAAAAATAG-AATTTTGGAAAGTTCGAGGGT
1 --AAAATGGTAATTTTTGAAAGTTAG-GGGT
* *
87221 -AAATGATAATTTTTGGTGAAA--TCGGGGTT
1 AAAATGGTAA-TTTT--TGAAAGTTAGGGG-T
* *
87250 AAAAATAG-AATTTTGGAAAGTTTAGGGGT
1 -AAAATGGTAATTTTTGAAAG-TTAGGGGT
*
87279 AAAATGGT-ATTTTGGTGAAA--TCGAGGGT
1 AAAATGGTAATTTT--TGAAAGTTAG-GGGT
*
87307 CAAAATGG-AATTTTTGGAAAGTTCGGGGGT
1 -AAAATGGTAATTTTT-GAAAGTT-AGGGGT
* * *
87337 AAAATTGTAATTTTTAGAAAATTTGAGGGT
1 AAAATGGTAATTTTT-GAAAGTTAG-GGGT
*
87367 CAAAAT-ATAATTTTTG
1 -AAAATGGTAATTTTTG
87383 GATAGTTTAG
Statistics
Matches: 316, Mismatches: 49, Indels: 112
0.66 0.10 0.23
Matches are distributed among these distances:
26 11 0.03
27 22 0.07
28 76 0.24
29 88 0.28
30 91 0.29
31 16 0.05
32 12 0.04
ACGTcount: A:0.36, C:0.03, G:0.27, T:0.34
Consensus pattern (28 bp):
AAAATGGTAATTTTTGAAAGTTAGGGGT
Found at i:87204 original size:57 final size:59
Alignment explanation
Indices: 86953--87351 Score: 436
Period size: 58 Copynumber: 6.9 Consensus size: 59
86943 TTTGGAAAGT
* * *
86953 TCGAAGGT-AAAAAT-GTAATTTTTGAAAGTTTAGGGGTAAAATGGTAATTTTTGGTGAAA
1 TCGAGGGTCAAAAATAG-AATTTTGGAAAG-TTCGGGGTAAAATGGTAATTTTTGGTGAAA
* * * *
87012 T-TAGGGTC-AAAATGGAATTTTGGAAGGTTCGGGAGTAAAATGGTAATTTTTAGTGAAA
1 TCGAGGGTCAAAAATAGAATTTTGGAAAGTTCGGG-GTAAAATGGTAATTTTTGGTGAAA
*
87070 TCGA-GGTCAAGACA-A-AATTTTGGAAAGTTCGGGGATAAAATGGTAATTTTTGGTGAAA
1 TCGAGGGTCAA-AAATAGAATTTTGGAAAGTTCGGGG-TAAAATGGTAATTTTTGGTGAAA
* * *
87128 T-TAGGGT-AATAAT-GAAATTTTGGAAAGTTTGGGGTAAAATGGTAATTTTT-GTGAAA
1 TCGAGGGTCAAAAATAG-AATTTTGGAAAGTTCGGGGTAAAATGGTAATTTTTGGTGAAA
* *
87184 TCGA-GATCAAAAATAGAATTTTGGAAAGTTCGAGGGT-AAATGATAATTTTTGGTGAAA
1 TCGAGGGTCAAAAATAGAATTTTGGAAAGTTCG-GGGTAAAATGGTAATTTTTGGTGAAA
* *
87242 TCG-GGGTTAAAAATAGAATTTTGGAAAGTTTAGGGGTAAAATGGT-A-TTTTGGTGAAA
1 TCGAGGGTCAAAAATAGAATTTTGGAAAG-TTCGGGGTAAAATGGTAATTTTTGGTGAAA
* *
87299 TCGAGGGTC-AAAATGGAATTTTTGGAAAGTTCGGGGGTAAAATTGTAATTTTT
1 TCGAGGGTCAAAAATAGAA-TTTTGGAAAGTTC-GGGGTAAAATGGTAATTTTT
87352 AGAAAATTTG
Statistics
Matches: 288, Mismatches: 28, Indels: 47
0.79 0.08 0.13
Matches are distributed among these distances:
56 10 0.03
57 83 0.29
58 175 0.61
59 14 0.05
60 6 0.02
ACGTcount: A:0.36, C:0.04, G:0.27, T:0.34
Consensus pattern (59 bp):
TCGAGGGTCAAAAATAGAATTTTGGAAAGTTCGGGGTAAAATGGTAATTTTTGGTGAAA
Found at i:87340 original size:29 final size:29
Alignment explanation
Indices: 86933--87389 Score: 181
Period size: 29 Copynumber: 15.8 Consensus size: 29
86923 ATCGAGGTCA
**
86933 AAAATGGAA-TTTTGGAAAGTTCGAAGGT
1 AAAATGGAATTTTTGGAAAGTTCGGGGGT
* **
86961 AAAAATGTAATTTTT-GAAAGTTTAGGGGT
1 -AAAATGGAATTTTTGGAAAGTTCGGGGGT
*
86990 AAAATGGTAATTTTTGGTGAAA-TT--AGGGT
1 AAAATGG-AATTTTT-G-GAAAGTTCGGGGGT
* *
87019 CAAAATGGAA-TTTTGGAAGGTTCGGGAGT
1 -AAAATGGAATTTTTGGAAAGTTCGGGGGT
*
87048 AAAATGGTAATTTTTAGTGAAA--TC-GAGGT
1 AAAATGG-AATTTTT-G-GAAAGTTCGGGGGT
* ** * *
87077 CAAGA-CAAAATTTTGGAAAGTTCGGGGAT
1 -AAAATGGAATTTTTGGAAAGTTCGGGGGT
*
87106 AAAATGGTAATTTTTGGTGAAA-TT--AGGGT
1 AAAATGG-AATTTTT-G-GAAAGTTCGGGGGT
* *
87135 AATAAT-GAAATTTTGGAAAGTT-TGGGGT
1 AA-AATGGAATTTTTGGAAAGTTCGGGGGT
* *
87163 AAAATGGTAATTTTTGTGAAA--TC-GAGAT
1 AAAATGG-AATTTTTG-GAAAGTTCGGGGGT
* *
87191 CAAAAATAGAA-TTTTGGAAAGTTCGAGGGT
1 --AAAATGGAATTTTTGGAAAGTTCGGGGGT
* *
87221 -AAATGATAATTTTTGGTGAAA--TCGGGGTT
1 AAAATG-GAATTTTT-G-GAAAGTTCGGGGGT
* **
87250 AAAAATAGAA-TTTTGGAAAGTTTAGGGGT
1 -AAAATGGAATTTTTGGAAAGTTCGGGGGT
* * *
87279 AAAATGGTATTTTGGTGAAA--TCGAGGGT
1 AAAATGGAATTTTTG-GAAAGTTCGGGGGT
87307 CAAAATGGAATTTTTGGAAAGTTCGGGGGT
1 -AAAATGGAATTTTTGGAAAGTTCGGGGGT
* * * * *
87337 AAAATTGTAATTTTTAGAAAATTTGAGGGT
1 AAAA-TGGAATTTTTGGAAAGTTCGGGGGT
** *
87367 CAAAATATAATTTTTGGATAGTT
1 -AAAATGGAATTTTTGGAAAGTT
87390 TAGGGACCTC
Statistics
Matches: 319, Mismatches: 61, Indels: 95
0.67 0.13 0.20
Matches are distributed among these distances:
26 11 0.03
27 22 0.07
28 69 0.22
29 99 0.31
30 89 0.28
31 18 0.06
32 11 0.03
ACGTcount: A:0.36, C:0.03, G:0.27, T:0.34
Consensus pattern (29 bp):
AAAATGGAATTTTTGGAAAGTTCGGGGGT
Found at i:88211 original size:213 final size:213
Alignment explanation
Indices: 87844--88270 Score: 800
Period size: 213 Copynumber: 2.0 Consensus size: 213
87834 ACATAAGACG
*
87844 TAACGAACTTCCTGCTATTACATCCAACCAAAAACAGATCAGATTACTTGGCTTTCAATTATTTA
1 TAACGAACTTCCTGCTATTACATCCAACCAAAAACAGATCAGATTACTTGGCTTGCAATTATTTA
87909 TTACATCATAGATATATCCAATTCCTCAATGATGAGTGCTTACGTGTTTACGGGCAGGCCAAGCA
66 TTACATCATAGATATATCCAATTCCTCAATGATGAGTGCTTACGTGTTTACGGGCAGGCCAAGCA
* *
87974 ATATATTGTTTTCTATTTGGGTATATATACCACCTCACCCTTATAAATCTCTAGTCTTCCAATTG
131 ATATATTGCTTTCTATTTGGGTATATATACCAACTCACCCTTATAAATCTCTAGTCTTCCAATTG
88039 ATGTGTGATTTTAAAATA
196 ATGTGTGATTTTAAAATA
*
88057 TAACGAACTTCCTGCTATTACATCCAACCAAAAACAGATCAGATTACTTGGCTTGCATTTATTTA
1 TAACGAACTTCCTGCTATTACATCCAACCAAAAACAGATCAGATTACTTGGCTTGCAATTATTTA
* *
88122 TTACATGATAGATATATCCAATTCCTCAATGATGAGTGCTTCCGTGTTTACGGGCAGGCCAAGCA
66 TTACATCATAGATATATCCAATTCCTCAATGATGAGTGCTTACGTGTTTACGGGCAGGCCAAGCA
88187 ATATATTGCTTTCTATTTGGGTATATATACCAACTCACCCTTATAAATCTCTAGTCTTCCAATTG
131 ATATATTGCTTTCTATTTGGGTATATATACCAACTCACCCTTATAAATCTCTAGTCTTCCAATTG
88252 ATGTGTGATTTTAAAATA
196 ATGTGTGATTTTAAAATA
88270 T
1 T
88271 TACTTTAATA
Statistics
Matches: 208, Mismatches: 6, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
213 208 1.00
ACGTcount: A:0.31, C:0.20, G:0.14, T:0.36
Consensus pattern (213 bp):
TAACGAACTTCCTGCTATTACATCCAACCAAAAACAGATCAGATTACTTGGCTTGCAATTATTTA
TTACATCATAGATATATCCAATTCCTCAATGATGAGTGCTTACGTGTTTACGGGCAGGCCAAGCA
ATATATTGCTTTCTATTTGGGTATATATACCAACTCACCCTTATAAATCTCTAGTCTTCCAATTG
ATGTGTGATTTTAAAATA
Found at i:93935 original size:44 final size:44
Alignment explanation
Indices: 93872--93959 Score: 140
Period size: 44 Copynumber: 2.0 Consensus size: 44
93862 ATGCAAATGC
93872 AAGCAAACGAATATCTTATTCCCAAGTGATCCATTTTTTCTTTT
1 AAGCAAACGAATATCTTATTCCCAAGTGATCCATTTTTTCTTTT
** **
93916 AAGCAAACGTGTATCTTATTCCCGTGTGATCCATTTTTTCTTTT
1 AAGCAAACGAATATCTTATTCCCAAGTGATCCATTTTTTCTTTT
93960 TTCTTTTTCT
Statistics
Matches: 40, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
44 40 1.00
ACGTcount: A:0.25, C:0.20, G:0.11, T:0.43
Consensus pattern (44 bp):
AAGCAAACGAATATCTTATTCCCAAGTGATCCATTTTTTCTTTT
Found at i:98725 original size:6 final size:6
Alignment explanation
Indices: 98714--98765 Score: 65
Period size: 6 Copynumber: 8.8 Consensus size: 6
98704 TTTAATTTAT
98714 TTTAAA TTTAAA -TT-AA TCTTAAAA TTTAAA TTT-AA TTTAAA TTTAAA
1 TTTAAA TTTAAA TTTAAA T-TT-AAA TTTAAA TTTAAA TTTAAA TTTAAA
98761 TTTAA
1 TTTAA
98766 TTCCAAAATT
Statistics
Matches: 41, Mismatches: 0, Indels: 10
0.80 0.00 0.20
Matches are distributed among these distances:
4 2 0.05
5 7 0.17
6 27 0.66
7 2 0.05
8 3 0.07
ACGTcount: A:0.48, C:0.02, G:0.00, T:0.50
Consensus pattern (6 bp):
TTTAAA
Found at i:98729 original size:11 final size:11
Alignment explanation
Indices: 98715--98767 Score: 54
Period size: 11 Copynumber: 4.6 Consensus size: 11
98705 TTAATTTATT
98715 TTAAATTTAAA
1 TTAAATTTAAA
98726 TT-AATCTTAAAA
1 TTAAAT-TT-AAA
*
98738 TTTAAATTTAAT
1 -TTAAATTTAAA
98750 TTAAATTTAAA
1 TTAAATTTAAA
*
98761 TTTAATT
1 TTAAATT
98768 CCAAAATTAA
Statistics
Matches: 35, Mismatches: 3, Indels: 8
0.76 0.07 0.17
Matches are distributed among these distances:
10 3 0.09
11 20 0.57
12 5 0.14
13 4 0.11
14 3 0.09
ACGTcount: A:0.47, C:0.02, G:0.00, T:0.51
Consensus pattern (11 bp):
TTAAATTTAAA
Found at i:98763 original size:17 final size:17
Alignment explanation
Indices: 98707--98767 Score: 88
Period size: 17 Copynumber: 3.5 Consensus size: 17
98697 ACCCCCTTTT
*
98707 AATTTATTTTAAATTTA
1 AATTTAATTTAAATTTA
98724 AA-TTAATCTTAAAATTTA
1 AATTTAAT-TT-AAATTTA
98742 AATTTAATTTAAATTTA
1 AATTTAATTTAAATTTA
98759 AATTTAATT
1 AATTTAATT
98768 CCAAAATTAA
Statistics
Matches: 40, Mismatches: 1, Indels: 6
0.85 0.02 0.13
Matches are distributed among these distances:
16 4 0.10
17 20 0.50
18 11 0.28
19 5 0.12
ACGTcount: A:0.46, C:0.02, G:0.00, T:0.52
Consensus pattern (17 bp):
AATTTAATTTAAATTTA
Found at i:98778 original size:35 final size:35
Alignment explanation
Indices: 98707--98775 Score: 95
Period size: 35 Copynumber: 1.9 Consensus size: 35
98697 ACCCCCTTTT
* *
98707 AATTTATTTTAAATTTAAATTAATCTTAAAATTTA
1 AATTTAATTTAAATTTAAATTAATCTCAAAATTTA
98742 AATTTAATTTAAATTTAAATTTAAT-TCCAAAATT
1 AATTTAATTTAAATTTAAA-TTAATCT-CAAAATT
98776 AAAAAGTCTA
Statistics
Matches: 30, Mismatches: 2, Indels: 3
0.86 0.06 0.09
Matches are distributed among these distances:
35 19 0.63
36 11 0.37
ACGTcount: A:0.46, C:0.04, G:0.00, T:0.49
Consensus pattern (35 bp):
AATTTAATTTAAATTTAAATTAATCTCAAAATTTA
Found at i:99502 original size:9 final size:9
Alignment explanation
Indices: 99485--99598 Score: 66
Period size: 9 Copynumber: 12.0 Consensus size: 9
99475 TCAAGATGTC
99485 ATTAATAAT
1 ATTAATAAT
*
99494 ATTATTAATT
1 ATTAATAA-T
*
99504 ATTATGGTAAT
1 ATTA--ATAAT
* *
99515 AATAATAAC
1 ATTAATAAT
*
99524 AATAATAAT
1 ATTAATAAT
*
99533 ATTACTAATAT
1 ATTAAT-A-AT
99544 CATTAATAAT
1 -ATTAATAAT
* *
99554 ATTAATGAC
1 ATTAATAAT
*
99563 AATAATAAT
1 ATTAATAAT
* *
99572 AATAATATT
1 ATTAATAAT
*
99581 AATAATAAT
1 ATTAATAAT
99590 ATTAATAAT
1 ATTAATAAT
99599 GACATTAATT
Statistics
Matches: 82, Mismatches: 17, Indels: 12
0.74 0.15 0.11
Matches are distributed among these distances:
9 59 0.72
10 8 0.10
11 7 0.09
12 8 0.10
ACGTcount: A:0.54, C:0.04, G:0.03, T:0.40
Consensus pattern (9 bp):
ATTAATAAT
Found at i:99517 original size:3 final size:3
Alignment explanation
Indices: 99511--99598 Score: 79
Period size: 3 Copynumber: 29.3 Consensus size: 3
99501 ATTATTATGG
* * * * *
99511 TAA TAA TAA TAA CAA TAA TAA TAT TAC TAA T-A TCAT TAA TAA TAT
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA T-AA TAA TAA TAA
* * * *
99556 TAA TGA CAA TAA TAA TAA TAA TAT TAA TAA TAA TAT TAA TAA T
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA T
99599 GACATTAATT
Statistics
Matches: 66, Mismatches: 17, Indels: 4
0.76 0.20 0.05
Matches are distributed among these distances:
2 2 0.03
3 63 0.95
4 1 0.02
ACGTcount: A:0.57, C:0.05, G:0.01, T:0.38
Consensus pattern (3 bp):
TAA
Found at i:99532 original size:39 final size:39
Alignment explanation
Indices: 99511--99597 Score: 108
Period size: 36 Copynumber: 2.3 Consensus size: 39
99501 ATTATTATGG
99511 TAATAATAATAACAATAATAATATTACTAATATCATTAA
1 TAATAATAATAACAATAATAATATTACTAATATCATTAA
* * * *
99550 TAATATTAATGACAATAATAATA--A-TAATATTAATAA
1 TAATAATAATAACAATAATAATATTACTAATATCATTAA
*
99586 TAATATTAATAA
1 TAATAATAATAA
99598 TGACATTAAT
Statistics
Matches: 43, Mismatches: 5, Indels: 3
0.84 0.10 0.06
Matches are distributed among these distances:
36 21 0.49
37 1 0.02
39 21 0.49
ACGTcount: A:0.57, C:0.05, G:0.01, T:0.37
Consensus pattern (39 bp):
TAATAATAATAACAATAATAATATTACTAATATCATTAA
Found at i:99607 original size:12 final size:12
Alignment explanation
Indices: 99485--99598 Score: 92
Period size: 12 Copynumber: 9.8 Consensus size: 12
99475 TCAAGATGTC
*
99485 ATTAATAATATT
1 ATTAATAATAAT
* *
99497 ATTAATTATTAT
1 ATTAATAATAAT
**
99509 GGTAATAATAAT
1 ATTAATAATAAT
**
99521 AACAATAATAAT
1 ATTAATAATAAT
*
99533 ATTACTAAT-AT
1 ATTAATAATAAT
99544 CA-T--TAATAAT
1 -ATTAATAATAAT
* *
99554 ATTAATGACAAT
1 ATTAATAATAAT
*
99566 AATAATAATAAT
1 ATTAATAATAAT
99578 ATTAATAATAAT
1 ATTAATAATAAT
99590 ATTAATAAT
1 ATTAATAAT
99599 GACATTAATT
Statistics
Matches: 78, Mismatches: 19, Indels: 10
0.73 0.18 0.09
Matches are distributed among these distances:
9 5 0.06
10 3 0.04
11 3 0.04
12 67 0.86
ACGTcount: A:0.54, C:0.04, G:0.03, T:0.40
Consensus pattern (12 bp):
ATTAATAATAAT
Found at i:100672 original size:30 final size:30
Alignment explanation
Indices: 100597--100829 Score: 220
Period size: 29 Copynumber: 7.9 Consensus size: 30
100587 CCTTGGAGAT
*
100597 CCCCG-AACTGTCAAAAAAT-TCCATTTTT-A
1 CCCCGAAACT-TCCAAAAATCT-CATTTTTGA
* *
100626 CTCCG-AACTTCTAAAAATCTCATTTTTGA
1 CCCCGAAACTTCCAAAAATCTCATTTTTGA
*
100655 CCCCGAAACTTCCAAAAATCCCA-TTTTGA
1 CCCCGAAACTTCCAAAAATCTCATTTTTGA
100684 CCCCGAAACTTCCAAAAAT-TC-TATTTTGA
1 CCCCGAAACTTCCAAAAATCTCAT-TTTTGA
* * *
100713 CCTCGGAACTTCCAAAAATCCCATTTTTGA
1 CCCCGAAACTTCCAAAAATCTCATTTTTGA
*
100743 CCTCGAAACTTCCAAAAAT-TCCATTTTTGA
1 CCCCGAAACTTCCAAAAATCT-CATTTTTGA
* *
100773 CCTCAAAACTTCCAAAAATAC-CATTTTT-A
1 CCCCGAAACTTCCAAAAAT-CTCATTTTTGA
*
100802 CCCTCG-AACATCC-AAAATCTCCATTTTT
1 CCC-CGAAACTTCCAAAAATCT-CATTTTT
100830 AACCTAAAAA
Statistics
Matches: 176, Mismatches: 15, Indels: 26
0.81 0.07 0.12
Matches are distributed among these distances:
27 1 0.01
28 21 0.12
29 78 0.44
30 75 0.43
31 1 0.01
ACGTcount: A:0.33, C:0.29, G:0.06, T:0.31
Consensus pattern (30 bp):
CCCCGAAACTTCCAAAAATCTCATTTTTGA
Found at i:100827 original size:59 final size:58
Alignment explanation
Indices: 100610--100887 Score: 280
Period size: 59 Copynumber: 4.7 Consensus size: 58
100600 CGAACTGTCA
* * * * *
100610 AAAAATTCCATTTTTACTCCGAACTTCTAAAAA-TCTCATTTTTGACCCCGAAACTTCC
1 AAAAATACCATTTTTACCCCGAACTTCCAAAAATTC-CATTTTTGACCTCAAAACTTCC
* * * **
100668 AAAAATCCCATTTTGACCCCGAAACTTCCAAAAATTCTA-TTTTGACCTCGGAACTTCC
1 AAAAATACCATTTTTACCCCG-AACTTCCAAAAATTCCATTTTTGACCTCAAAACTTCC
* *
100726 AAAAATCCCATTTTTGACCTCGAAACTTCCAAAAATTCCATTTTTGACCTCAAAACTTCC
1 AAAAATACCATTTTT-ACCCCG-AACTTCCAAAAATTCCATTTTTGACCTCAAAACTTCC
* * *
100786 AAAAATACCATTTTTACCCTCGAACATCC-AAAATCTCCATTTTTAACCTAAAAAC-TCTC
1 AAAAATACCATTTTTACCC-CGAACTTCCAAAAAT-TCCATTTTTGACCTCAAAACTTC-C
* *
100845 AAAATTACCA-TTTTACCCCCGAA-TGTCTAAAAATTCCATTTTT
1 AAAAATACCATTTTTA-CCCCGAACT-TCCAAAAATTCCATTTTT
100888 AAACCCTAAA
Statistics
Matches: 190, Mismatches: 20, Indels: 20
0.83 0.09 0.09
Matches are distributed among these distances:
58 76 0.40
59 79 0.42
60 35 0.18
ACGTcount: A:0.35, C:0.28, G:0.05, T:0.32
Consensus pattern (58 bp):
AAAAATACCATTTTTACCCCGAACTTCCAAAAATTCCATTTTTGACCTCAAAACTTCC
Found at i:100856 original size:30 final size:28
Alignment explanation
Indices: 100757--100858 Score: 82
Period size: 30 Copynumber: 3.5 Consensus size: 28
100747 GAAACTTCCA
*
100757 AAAATTCCATTTTTGACCTCAAAACT-TCC
1 AAAATTCCATTTTTAACCT-AAAACTCT-C
* * **
100786 AAAAATACCATTTTTACCCTCGAACATC-C
1 -AAAATTCCATTTTTAACCTAAAAC-TCTC
100815 AAAATCTCCATTTTTAACCTAAAAACTCTC
1 AAAAT-TCCATTTTTAACCT-AAAACTCTC
100845 AAAATTACCATTTT
1 AAAATT-CCATTTT
100859 ACCCCCGAAT
Statistics
Matches: 57, Mismatches: 9, Indels: 12
0.73 0.12 0.15
Matches are distributed among these distances:
28 5 0.09
29 19 0.33
30 33 0.58
ACGTcount: A:0.38, C:0.26, G:0.02, T:0.33
Consensus pattern (28 bp):
AAAATTCCATTTTTAACCTAAAACTCTC
Found at i:100907 original size:59 final size:56
Alignment explanation
Indices: 100755--100917 Score: 164
Period size: 59 Copynumber: 2.8 Consensus size: 56
100745 TCGAAACTTC
* * * *
100755 CAAAAATTCCATTTTTGACCTCAAAACTTCCAAAAATACCATTTTTACCCTCGAACAT
1 CAAAAATTCCATTTTTAACCT-AAAAATTCCAAAATTACCA-TTTTACCCCCGAACAT
* * **
100813 CCAAAATCTCCATTTTTAACCTAAAAACTCTCAAAATTACCATTTTACCCCCGAATGT
1 CAAAAAT-TCCATTTTTAACCTAAAAATTC-CAAAATTACCATTTTACCCCCGAACAT
** *
100871 CTAAAAATTCCATTTTTAAACCCTAAATTTTCCAAAATTACAATTTT
1 C-AAAAATTCCATTTTT-AA-CCTAAAAATTCCAAAATTACCATTTT
100918 GCCTCAAAAA
Statistics
Matches: 87, Mismatches: 13, Indels: 9
0.80 0.12 0.08
Matches are distributed among these distances:
58 35 0.40
59 44 0.51
60 8 0.09
ACGTcount: A:0.38, C:0.26, G:0.02, T:0.34
Consensus pattern (56 bp):
CAAAAATTCCATTTTTAACCTAAAAATTCCAAAATTACCATTTTACCCCCGAACAT
Found at i:101323 original size:96 final size:97
Alignment explanation
Indices: 101182--101367 Score: 236
Period size: 96 Copynumber: 1.9 Consensus size: 97
101172 AAAACTTTAA
* *
101182 AATCGAGGCAATGTTCTGTTATTTCGAGTTTCAAAAATTTACGCCTTAACTTACTAAGTACAA-T
1 AATCGAGGCAATGTTCTCTTATTTCGAGTTTCAAAAATTTACGCCTTAACTTACTAAGTACAACC
* *
101246 TTTTCTTCAAATTGAAATAATCGAATACCCTT
66 TTTTCCTCAAATCGAAATAATCGAATACCCTT
* * * *
101278 AATCGAGGCAATGTT-TCCTTATCTTCGA-TTAT-GAAAATTTGCGCCTTAACTTACTAGGTGCA
1 AATCGAGGCAATGTTCT-CTTAT-TTCGAGTT-TCAAAAATTTACGCCTTAACTTACTAAGTACA
*
101340 ACCTTTTCCTCAAATCGAGATAATCGAA
63 ACCTTTTCCTCAAATCGAAATAATCGAA
101368 CATCCTTTCC
Statistics
Matches: 77, Mismatches: 9, Indels: 7
0.83 0.10 0.08
Matches are distributed among these distances:
95 1 0.01
96 48 0.62
97 28 0.36
ACGTcount: A:0.32, C:0.19, G:0.13, T:0.35
Consensus pattern (97 bp):
AATCGAGGCAATGTTCTCTTATTTCGAGTTTCAAAAATTTACGCCTTAACTTACTAAGTACAACC
TTTTCCTCAAATCGAAATAATCGAATACCCTT
Done.