genome.fa.s15246.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01015246.1 Kokia drynarioides strain JFW-HI SEQ_130291, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  194553

Tables:   1   

This is table  1  of  1  ( 46 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4783--4824	17	2.4	17	88	4	57	21	28	2	47	1.63
4763--4810	24	2.0	24	83	0	60	18	35	2	43	1.62
10100--10170	31	2.3	30	85	9	90	32	5	5	56	1.46
15383--15471	31	3.0	29	76	16	92	33	12	13	40	1.82
30231--30362	63	2.1	63	84	0	165	40	18	17	24	1.91
34197--34224	3	9.3	3	100	0	56	67	0	0	32	0.91
47578--47622	13	3.5	13	82	14	58	35	0	4	60	1.17
51334--51377	6	7.7	6	85	10	65	47	31	2	18	1.61
52974--53022	24	2.0	24	84	7	64	48	2	2	46	1.25
59166--59194	13	2.2	13	100	0	58	51	20	27	0	1.47
61067--61178	58	1.9	58	100	0	224	35	20	17	25	1.95
64603--64743	29	4.8	29	72	7	104	32	4	27	34	1.79
64613--64677	31	2.1	32	91	5	107	30	0	24	44	1.54
64603--64684	30	2.7	30	82	12	105	34	0	26	39	1.57
64599--64768	59	2.9	59	81	0	187	33	5	27	32	1.81
66537--66615	17	4.6	17	82	0	95	53	1	2	43	1.22
66940--67401	206	2.2	206	84	2	570	21	21	20	36	1.95
78256--78305	23	2.2	23	92	3	84	48	4	18	30	1.66
85389--85504	57	2.0	57	89	0	178	32	0	18	47	1.55
85653--85678	9	2.9	9	100	0	52	42	11	11	34	1.77
85671--85721	23	2.2	24	92	3	86	39	19	11	29	1.87
87350--87393	10	4.6	9	83	11	52	40	2	2	54	1.25
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
87357--87393	19	1.9	19	89	10	58	43	0	2	54	1.14
91655--91688	14	2.4	14	100	0	68	8	41	17	32	1.80
102221--102300	38	2.1	38	100	0	160	33	22	17	26	1.96
102428--102464	18	2.1	18	89	0	56	24	27	0	48	1.51
119697--119740	23	1.9	24	86	9	65	54	0	6	38	1.27
124084--124122	6	6.5	6	87	0	51	46	0	30	23	1.53
126384--126811	109	3.9	111	80	8	417	38	15	17	28	1.91
126385--126803	222	1.9	221	80	7	485	38	15	17	28	1.91
131831--131878	23	2.1	23	96	0	87	18	10	20	50	1.76
135147--135191	3	15.0	3	92	0	54	57	6	0	35	1.25
136044--136077	3	11.3	3	100	0	68	64	0	35	0	0.94
137511--137541	2	15.5	2	93	0	53	48	0	3	48	1.17
148308--148361	15	3.6	15	85	7	74	35	9	9	46	1.68
150684--150741	29	2.0	29	83	6	73	60	10	5	24	1.49
151326--151367	19	2.2	19	100	0	84	76	4	9	9	1.15
153832--153862	15	2.1	15	93	0	53	22	0	6	70	1.09
159617--159682	23	2.8	23	93	2	105	15	19	27	37	1.92
159688--159777	23	3.9	23	72	17	78	12	24	17	45	1.83
162758--162836	38	2.1	37	86	9	106	37	13	7	40	1.74
167708--167795	43	2.0	43	95	0	158	34	9	20	36	1.84
171559--171596	3	12.7	3	100	0	76	31	0	0	68	0.90
179727--179757	13	2.4	13	100	0	62	12	6	35	45	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
191661--191694	2	17.0	2	100	0	68	0	0	50	50	1.00
193474--193665	96	2.0	96	84	4	253	34	13	21	30	1.92

Tables:   1

The End!