Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NTFQ01015255.1 Kokia drynarioides strain JFW-HI SEQ_130300, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 749686
ACGTcount: A:0.35, C:0.15, G:0.15, T:0.34
Warning! 917 characters in sequence are not A, C, G, or T
File 1 of 2
Found at i:5261 original size:28 final size:25
Alignment explanation
Indices: 5214--5275 Score: 70
Period size: 28 Copynumber: 2.4 Consensus size: 25
5204 GCATAAATAT
*
5214 ATAAAAAAATTACCTAAAGATATAC
1 ATAAAAAAATTACCTAAAGACATAC
* *
5239 ATAAAATAATATTAACCTCAAGACATTC
1 ATAAAA-AA-ATT-ACCTAAAGACATAC
5267 ATAAAAAAA
1 ATAAAAAAA
5276 ATATAAAATT
Statistics
Matches: 31, Mismatches: 3, Indels: 5
0.79 0.08 0.13
Matches are distributed among these distances:
25 6 0.19
26 3 0.10
27 5 0.16
28 17 0.55
ACGTcount: A:0.60, C:0.13, G:0.03, T:0.24
Consensus pattern (25 bp):
ATAAAAAAATTACCTAAAGACATAC
Found at i:6060 original size:26 final size:26
Alignment explanation
Indices: 6003--6052 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
5993 TACCTATTTG
*
6003 AAAAAAAATCATAACTTATCATCAAA
1 AAAAAAAATCATAACTTATAATCAAA
6029 AAAAAAAATCATAACTTA-AATCAA
1 AAAAAAAATCATAACTTATAATCAA
6053 GGACAAAATT
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
25 5 0.22
26 18 0.78
ACGTcount: A:0.64, C:0.14, G:0.00, T:0.22
Consensus pattern (26 bp):
AAAAAAAATCATAACTTATAATCAAA
Found at i:7133 original size:20 final size:18
Alignment explanation
Indices: 7110--7147 Score: 58
Period size: 20 Copynumber: 2.0 Consensus size: 18
7100 TATTCTGTTC
7110 TATTTTTGAAATATTTTTAA
1 TATTTTTG-AAT-TTTTTAA
7130 TATTTTTGAATTTTTTAA
1 TATTTTTGAATTTTTTAA
7148 AAATAATATT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
18 7 0.39
19 3 0.17
20 8 0.44
ACGTcount: A:0.32, C:0.00, G:0.05, T:0.63
Consensus pattern (18 bp):
TATTTTTGAATTTTTTAA
Found at i:7195 original size:34 final size:32
Alignment explanation
Indices: 7153--7217 Score: 85
Period size: 34 Copynumber: 2.0 Consensus size: 32
7143 TTTAAAAATA
*
7153 ATATTTTTTCCTATTTTCGAAATACTTTTTTAC
1 ATATTTTTTCATATTTTCGAAATA-TTTTTTAC
* *
7186 ATATATTTTTTATATTTTCTAAATATTTTTTA
1 ATAT-TTTTTCATATTTTCGAAATATTTTTTA
7218 GCTTTTCGAA
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
33 11 0.39
34 17 0.61
ACGTcount: A:0.28, C:0.09, G:0.02, T:0.62
Consensus pattern (32 bp):
ATATTTTTTCATATTTTCGAAATATTTTTTAC
Found at i:7316 original size:13 final size:13
Alignment explanation
Indices: 7300--7324 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
7290 GAAATATAAA
7300 AAATATTTTTTTG
1 AAATATTTTTTTG
7313 AAATATTTTTTT
1 AAATATTTTTTT
7325 ACAAATTAAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.00, G:0.04, T:0.64
Consensus pattern (13 bp):
AAATATTTTTTTG
Found at i:8402 original size:30 final size:30
Alignment explanation
Indices: 8363--8543 Score: 256
Period size: 30 Copynumber: 6.1 Consensus size: 30
8353 TTGATTTTTT
* * * *
8363 TTTCATTTATTTTTTAAATTTAATTTGTAG
1 TTTCGTTTATATTTTAAATTTAATTTCTAA
8393 TTTCGTTTATATTTTAAATTTAATTTCTAA
1 TTTCGTTTATATTTTAAATTTAATTTCTAA
* *
8423 TTTCATTTATATTTAAAATTTAATTTCTAA
1 TTTCGTTTATATTTTAAATTTAATTTCTAA
*
8453 TTTTGTTTATATTTTAAATTTAATTTCTAA
1 TTTCGTTTATATTTTAAATTTAATTTCTAA
*
8483 TTT-GTTTATATTTAAAATTTAATTTCTAA
1 TTTCGTTTATATTTTAAATTTAATTTCTAA
* **
8512 TTTTGTTTATATTTTAAATTTCTTTTCTAA
1 TTTCGTTTATATTTTAAATTTAATTTCTAA
8542 TT
1 TT
8544 ATTATTTTTT
Statistics
Matches: 137, Mismatches: 13, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
29 28 0.20
30 109 0.80
ACGTcount: A:0.30, C:0.05, G:0.03, T:0.62
Consensus pattern (30 bp):
TTTCGTTTATATTTTAAATTTAATTTCTAA
Found at i:8515 original size:59 final size:60
Alignment explanation
Indices: 8363--8543 Score: 283
Period size: 60 Copynumber: 3.0 Consensus size: 60
8353 TTGATTTTTT
* * * * *
8363 TTTCATTTATTTTTTAAATTTAATTTGTAGTTTCGTTTATATTTTAAATTTAATTTCTAA
1 TTTCATTTATATTTAAAATTTAATTTCTAATTTTGTTTATATTTTAAATTTAATTTCTAA
8423 TTTCATTTATATTTAAAATTTAATTTCTAATTTTGTTTATATTTTAAATTTAATTTCTAA
1 TTTCATTTATATTTAAAATTTAATTTCTAATTTTGTTTATATTTTAAATTTAATTTCTAA
* **
8483 TTT-GTTTATATTTAAAATTTAATTTCTAATTTTGTTTATATTTTAAATTTCTTTTCTAA
1 TTTCATTTATATTTAAAATTTAATTTCTAATTTTGTTTATATTTTAAATTTAATTTCTAA
8542 TT
1 TT
8544 ATTATTTTTT
Statistics
Matches: 113, Mismatches: 8, Indels: 1
0.93 0.07 0.01
Matches are distributed among these distances:
59 55 0.49
60 58 0.51
ACGTcount: A:0.30, C:0.05, G:0.03, T:0.62
Consensus pattern (60 bp):
TTTCATTTATATTTAAAATTTAATTTCTAATTTTGTTTATATTTTAAATTTAATTTCTAA
Found at i:8559 original size:59 final size:58
Alignment explanation
Indices: 8368--8562 Score: 254
Period size: 59 Copynumber: 3.3 Consensus size: 58
8358 TTTTTTTTCA
* * *
8368 TTTATTT-TTT-AAATTTAATTTGTAGTTTCGTTTATATTTTAAATTTAATTTCTAAT
1 TTTATTTATTTAAAATTTAATTTCTAATTTTGTTTATATTTTAAATTTAATTTCTAAT
*
8424 TTCATTTATATTTAAAATTTAATTTCTAATTTTGTTTATATTTTAAATTTAATTTCTAAT
1 TTTA-TT-TATTTAAAATTTAATTTCTAATTTTGTTTATATTTTAAATTTAATTTCTAAT
**
8484 TTGT-TTATATTTAAAATTTAATTTCTAATTTTGTTTATATTTTAAATTTCTTTTCTAAT
1 TT-TATT-TATTTAAAATTTAATTTCTAATTTTGTTTATATTTTAAATTTAATTTCTAAT
8543 TATTATTT-TTTCAAAATTTA
1 T-TTATTTATTT-AAAATTTA
8563 TATAACCTTT
Statistics
Matches: 124, Mismatches: 7, Indels: 13
0.86 0.05 0.09
Matches are distributed among these distances:
56 3 0.02
57 2 0.02
58 4 0.03
59 67 0.54
60 48 0.39
ACGTcount: A:0.31, C:0.05, G:0.03, T:0.62
Consensus pattern (58 bp):
TTTATTTATTTAAAATTTAATTTCTAATTTTGTTTATATTTTAAATTTAATTTCTAAT
Found at i:10361 original size:7 final size:8
Alignment explanation
Indices: 10339--10363 Score: 50
Period size: 8 Copynumber: 3.1 Consensus size: 8
10329 TTTATTCTAA
10339 CTATTTTT
1 CTATTTTT
10347 CTATTTTT
1 CTATTTTT
10355 CTATTTTT
1 CTATTTTT
10363 C
1 C
10364 AGATGGTCTG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 17 1.00
ACGTcount: A:0.12, C:0.16, G:0.00, T:0.72
Consensus pattern (8 bp):
CTATTTTT
Found at i:10474 original size:9 final size:9
Alignment explanation
Indices: 10451--10507 Score: 53
Period size: 9 Copynumber: 6.1 Consensus size: 9
10441 AGAGGGTAAG
*
10451 ATATTTTTAA
1 ATATTTTT-T
10461 ATATTTTTT
1 ATATTTTTT
*
10470 CTATTTTTT
1 ATATTTTTT
10479 AAATATTTTTT
1 --ATATTTTTT
*
10490 ATATTTTTG
1 ATATTTTTT
10499 A-ATTTTTT
1 ATATTTTTT
10507 A
1 A
10508 AAATTATATT
Statistics
Matches: 40, Mismatches: 5, Indels: 6
0.78 0.10 0.12
Matches are distributed among these distances:
8 7 0.17
9 17 0.43
10 8 0.20
11 8 0.20
ACGTcount: A:0.28, C:0.02, G:0.02, T:0.68
Consensus pattern (9 bp):
ATATTTTTT
Found at i:10476 original size:19 final size:19
Alignment explanation
Indices: 10451--10506 Score: 78
Period size: 20 Copynumber: 2.9 Consensus size: 19
10441 AGAGGGTAAG
10451 ATATTTTTAAATATTTTTT
1 ATATTTTTAAATATTTTTT
*
10470 CTATTTTTTAAATATTTTTT
1 ATA-TTTTTAAATATTTTTT
*
10490 ATATTTTTGAAT-TTTTT
1 ATATTTTTAAATATTTTT
10507 AAAATTATAT
Statistics
Matches: 33, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
18 5 0.15
19 10 0.30
20 18 0.55
ACGTcount: A:0.27, C:0.02, G:0.02, T:0.70
Consensus pattern (19 bp):
ATATTTTTAAATATTTTTT
Found at i:10479 original size:20 final size:20
Alignment explanation
Indices: 10454--10497 Score: 79
Period size: 20 Copynumber: 2.2 Consensus size: 20
10444 GGGTAAGATA
*
10454 TTTTTAAATATTTTTTCTAT
1 TTTTTAAATATTTTTTATAT
10474 TTTTTAAATATTTTTTATAT
1 TTTTTAAATATTTTTTATAT
10494 TTTT
1 TTTT
10498 GAATTTTTTA
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.25, C:0.02, G:0.00, T:0.73
Consensus pattern (20 bp):
TTTTTAAATATTTTTTATAT
Found at i:10546 original size:44 final size:42
Alignment explanation
Indices: 10471--10565 Score: 131
Period size: 44 Copynumber: 2.2 Consensus size: 42
10461 ATATTTTTTC
10471 TATTTTTTAAATATTTTTTATATTTTTGAA-TTTTTTAAAAT
1 TATTTTTTAAATATTTTTTATATTTTTGAATTTTTTTAAAAT
*
10512 TATATTTTTACATATATTTTTTAGT-TTTTCGAATTTTTTTAAAAT
1 TAT-TTTTTA-A-ATATTTTTTA-TATTTTTGAATTTTTTTAAAAT
10557 TATTTTTTA
1 TATTTTTTA
10566 TATCTTCGAA
Statistics
Matches: 48, Mismatches: 1, Indels: 7
0.86 0.02 0.12
Matches are distributed among these distances:
41 3 0.06
42 6 0.12
43 1 0.02
44 23 0.48
45 15 0.31
ACGTcount: A:0.29, C:0.02, G:0.03, T:0.65
Consensus pattern (42 bp):
TATTTTTTAAATATTTTTTATATTTTTGAATTTTTTTAAAAT
Found at i:10694 original size:20 final size:19
Alignment explanation
Indices: 10659--10707 Score: 53
Period size: 20 Copynumber: 2.5 Consensus size: 19
10649 TAAAAATATT
*
10659 ATATTTTTTATATTTTCGAA
1 ATATTTTTTAGATTTTCG-A
* *
10679 ATATTTTTTAGCTTTTTGA
1 ATATTTTTTAGATTTTCGA
*
10698 ATTTTTTTTA
1 ATATTTTTTA
10708 CATATATTTT
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
19 10 0.40
20 15 0.60
ACGTcount: A:0.24, C:0.04, G:0.06, T:0.65
Consensus pattern (19 bp):
ATATTTTTTAGATTTTCGA
Found at i:11353 original size:19 final size:20
Alignment explanation
Indices: 11324--11371 Score: 66
Period size: 20 Copynumber: 2.5 Consensus size: 20
11314 AAAATAATTT
11324 TAAAAAA-ATTT-GAAAA-A
1 TAAAAAATATTTCGAAAATA
11341 CTAAAAAATATTTCGAAAATA
1 -TAAAAAATATTTCGAAAATA
11362 TAAAAAATAT
1 TAAAAAATAT
11372 AAGATTTTTA
Statistics
Matches: 27, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
18 7 0.26
19 4 0.15
20 15 0.56
21 1 0.04
ACGTcount: A:0.65, C:0.04, G:0.04, T:0.27
Consensus pattern (20 bp):
TAAAAAATATTTCGAAAATA
Found at i:11429 original size:155 final size:156
Alignment explanation
Indices: 11225--11526 Score: 473
Period size: 155 Copynumber: 1.9 Consensus size: 156
11215 AAAATATTTC
* * * *
11225 ATTTGTAAAATAATATTTCGAAGATGTATTTTTTTAATATTTCGAAAATATAAAAAATATATGTA
1 ATTTGTAAAAAAATACTTCGAAAATGTATTTTTTTAATATTTCAAAAATATAAAAAATATATGTA
*
11290 AAAATTTTCATTTCGAAGATATAAAAAATAATTTTAAAAAAATTTGAAAAACTAAAAAATATTTC
66 AAAAATTTCATTTCGAAGATATAAAAAATAATTTTAAAAAAATTTGAAAAACT-AAAAATATTTC
11355 GAAAATATAAAAAATATAAGATTTTTA
130 GAAAATATAAAAAATATAAGATTTTTA
11382 ATTTG-AAAAAAATACTTCGAAAATGTA-TTTTTTAATATTTCAAAAATATAAAAAATATATGTA
1 ATTTGTAAAAAAATACTTCGAAAATGTATTTTTTTAATATTTCAAAAATATAAAAAATATATGTA
* ** * * *
11445 AAAAATTTCATTTCGAAGATATAAAACATAATTTTTTAAGAATTTGAAAAGCTAAAAATATTTTG
66 AAAAATTTCATTTCGAAGATATAAAAAATAATTTTAAAAAAATTTGAAAAACTAAAAATATTTCG
*
11510 TAAATATAAAAAATATA
131 AAAATATAAAAAATATA
11527 TGTAAATAAA
Statistics
Matches: 133, Mismatches: 12, Indels: 3
0.90 0.08 0.02
Matches are distributed among these distances:
154 27 0.20
155 82 0.62
156 19 0.14
157 5 0.04
ACGTcount: A:0.52, C:0.04, G:0.07, T:0.37
Consensus pattern (156 bp):
ATTTGTAAAAAAATACTTCGAAAATGTATTTTTTTAATATTTCAAAAATATAAAAAATATATGTA
AAAAATTTCATTTCGAAGATATAAAAAATAATTTTAAAAAAATTTGAAAAACTAAAAATATTTCG
AAAATATAAAAAATATAAGATTTTTA
Found at i:13116 original size:23 final size:23
Alignment explanation
Indices: 13068--13121 Score: 65
Period size: 23 Copynumber: 2.4 Consensus size: 23
13058 TTTAAATGGT
* ** *
13068 TTTTTTAATTATTTTAATTATCA
1 TTTTTAAATTATTTTAAAAATAA
13091 TTTTTAAATTATTTTAAAAATAA
1 TTTTTAAATTATTTTAAAAATAA
13114 -TTTTAAAT
1 TTTTTAAAT
13122 ATAGTATTTT
Statistics
Matches: 27, Mismatches: 4, Indels: 1
0.84 0.12 0.03
Matches are distributed among these distances:
22 8 0.30
23 19 0.70
ACGTcount: A:0.39, C:0.02, G:0.00, T:0.59
Consensus pattern (23 bp):
TTTTTAAATTATTTTAAAAATAA
Found at i:13430 original size:10 final size:11
Alignment explanation
Indices: 13385--13472 Score: 61
Period size: 11 Copynumber: 7.6 Consensus size: 11
13375 TTAATTATTT
*
13385 TAATTTTAATTA
1 TAATTTTAA-AA
* *
13397 TCATTTTTAAA
1 TAATTTTAAAA
*
13408 TTATTTTAAAAA
1 TAATTTT-AAAA
13420 TAATTTTAAATA
1 TAATTTTAAA-A
13432 TAGTATTTTAAAA
1 TA--ATTTTAAAA
*
13445 -AATTTTGAAA
1 TAATTTTAAAA
* *
13455 TATTTTTAATA
1 TAATTTTAAAA
13466 TAATTTT
1 TAATTTT
13473 TTTGTAATTT
Statistics
Matches: 60, Mismatches: 11, Indels: 11
0.73 0.13 0.13
Matches are distributed among these distances:
10 8 0.13
11 23 0.38
12 20 0.33
13 1 0.02
14 8 0.13
ACGTcount: A:0.43, C:0.01, G:0.02, T:0.53
Consensus pattern (11 bp):
TAATTTTAAAA
Found at i:13450 original size:36 final size:33
Alignment explanation
Indices: 13385--13473 Score: 81
Period size: 35 Copynumber: 2.6 Consensus size: 33
13375 TTAATTATTT
* **
13385 TAATTTTAATTATCATTTTTAAATTATTTTAAAAA
1 TAATTTTAAATAT-ATTTTTAAAAAATTTT-AAAA
*
13420 TAATTTTAAATATAGTATTTTAAAAAATTTTGAAA
1 TAATTTTAAATATA-T-TTTTAAAAAATTTTAAAA
*
13455 T-ATTTTTAATATAATTTTT
1 TAATTTTAAATAT-ATTTTT
13474 TTGTAATTTT
Statistics
Matches: 46, Mismatches: 5, Indels: 8
0.78 0.08 0.14
Matches are distributed among these distances:
33 4 0.09
34 12 0.26
35 18 0.39
36 12 0.26
ACGTcount: A:0.43, C:0.01, G:0.02, T:0.54
Consensus pattern (33 bp):
TAATTTTAAATATATTTTTAAAAAATTTTAAAA
Found at i:13455 original size:25 final size:26
Alignment explanation
Indices: 13409--13457 Score: 75
Period size: 25 Copynumber: 1.9 Consensus size: 26
13399 ATTTTTAAAT
13409 TATTTTAAAAATAATTTTAAATATAG
1 TATTTTAAAAATAATTTTAAATATAG
13435 TATTTT-AAAA-AATTTTGAAATAT
1 TATTTTAAAAATAATTTT-AAATAT
13458 TTTTAATATA
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
24 6 0.27
25 10 0.45
26 6 0.27
ACGTcount: A:0.49, C:0.00, G:0.04, T:0.47
Consensus pattern (26 bp):
TATTTTAAAAATAATTTTAAATATAG
Found at i:13501 original size:19 final size:20
Alignment explanation
Indices: 13479--13530 Score: 63
Period size: 20 Copynumber: 2.6 Consensus size: 20
13469 TTTTTTTGTA
13479 ATTT-TTTAATAATATTA-TT
1 ATTTATTTAA-AATATTATTT
*
13498 ATTTATTTAAATTATTATTT
1 ATTTATTTAAAATATTATTT
*
13518 ATTTATTTTAAAT
1 ATTTATTTAAAAT
13531 TTAAATAGTT
Statistics
Matches: 28, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
19 10 0.36
20 18 0.64
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (20 bp):
ATTTATTTAAAATATTATTT
Found at i:13511 original size:16 final size:16
Alignment explanation
Indices: 13492--13522 Score: 62
Period size: 16 Copynumber: 1.9 Consensus size: 16
13482 TTTTAATAAT
13492 ATTATTATTTATTTAA
1 ATTATTATTTATTTAA
13508 ATTATTATTTATTTA
1 ATTATTATTTATTTA
13523 TTTTAAATTT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (16 bp):
ATTATTATTTATTTAA
Found at i:13519 original size:20 final size:20
Alignment explanation
Indices: 13491--13531 Score: 66
Period size: 21 Copynumber: 2.0 Consensus size: 20
13481 TTTTTAATAA
13491 TATTATTATTTA-TTTAAAT
1 TATTATTATTTATTTTAAAT
13510 TATTATTTATTTATTTTAAAT
1 TATTA-TTATTTATTTTAAAT
13531 T
1 T
13532 TAAATAGTTT
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
19 5 0.25
20 7 0.35
21 8 0.40
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (20 bp):
TATTATTATTTATTTTAAAT
Found at i:13624 original size:16 final size:16
Alignment explanation
Indices: 13603--13640 Score: 58
Period size: 16 Copynumber: 2.4 Consensus size: 16
13593 ACATCAACAC
*
13603 TTTAATTTGAATAGTT
1 TTTAATTTAAATAGTT
*
13619 TTTAATTTAAATATTT
1 TTTAATTTAAATAGTT
13635 TTTAAT
1 TTTAAT
13641 AGTTTTTTAA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
16 20 1.00
ACGTcount: A:0.34, C:0.00, G:0.05, T:0.61
Consensus pattern (16 bp):
TTTAATTTAAATAGTT
Found at i:13879 original size:331 final size:328
Alignment explanation
Indices: 12894--13809 Score: 1074
Period size: 331 Copynumber: 2.9 Consensus size: 328
12884 AATTAATTTT
* * * * *
12894 AATTTAAATAATTTTTAATTTGAATTTGGTAAAAATTTGAAAAAG-TTGATAAATTATGTATTGT
1 AATTT-AATAGTTTTTAATTAGAATTTGGTAAAAATTTAAAAAAGTTTG-TAAATTATATATTAT
* * * ** *
12958 CACACCAACACATTAATTTGAATAGTTTTTAATTTAAAT-TTTTTTAATAATTTTTTTATTTACA
64 CACATCAACACTTTAATTTGAATAGTTTTTAATTTAAATATTTTTTAATAGTTTTTAAATTTCCA
** *
13022 TTTAAATATTATAATTATGTATTGTCACATCAACACTTTAAATGGT-TTTT--TTA-ATT-ATTT
129 TTTAAATATTATAATTATGTATTGTCACATCAACACTTTAAATAATCTTTTAATTATTTTAATTT
*
13082 TAATTATCATTTTTAAATTATTTTAAAAATAATTTTAAATATAGTATTTTAAATAAA-TTCGAAT
194 TAATTATCATTTTTAAATTATTTTAAAAATAATTTTAAATATAGTATTTTAAA-AAATTTC-AAA
*
13146 TATTTTTAATATAATA-TTTTGTAA-TTTT--A-AA-ATT-T-AATTA-TT--A-T-TTATT--T
257 TATTTTT-ATAAAATATTTTTGTAATTTTTGAATAATATTATAAATTATTTAAATTATTATTGAT
**
13196 --ATTTTA
321 AAATTCGA
* * * *
13202 AATTTAAATAG--TTT--TT-GAATTTGGTAAAAGTTTGAAATAGTTTGTAAATTATGTATTATC
1 AATTT-AATAGTTTTTAATTAGAATTTGGTAAAAATTTAAAAAAGTTTGTAAATTATATATTATC
* * **
13262 ATATCAACACTTTAATTTGAATAGTTTTTTATTTAAATATTTTTTAATAGTTTTTAAATTTGTAT
65 ACATCAACACTTTAATTTGAATAGTTTTTAATTTAAATATTTTTTAATAGTTTTTAAATTTCCAT
* * *
13327 TTAAATATTATAATTATGTATTGTCATATCAACACTTTAAATAGTTTTTTAATTATTTTAATTTT
130 TTAAATATTATAATTATGTATTGTCACATCAACACTTTAAATAATCTTTTAATTATTTTAATTTT
*
13392 AATTATCATTTTTAAATTATTTTAAAAATAATTTTAAATATAGTATTTTAAAAAATTTTGAAATA
195 AATTATCATTTTTAAATTATTTTAAAAATAATTTTAAATATAGTATTTTAAAAAA-TTTCAAATA
* * * * * * **
13457 TTTTTAATATAATTTTTTTGTAATTTTTTAATAATATTATTATTTATTTAAATTATTATTTATTT
259 TTTTT-ATAAAATATTTTTGTAATTTTTGAATAATATTATAAATTATTTAAATTATTATTGATAA
**
13522 ATTTTA
323 ATTCGA
*
13528 AATTTAAATAGTTTTTAATTAGAATTTGGTAAAAATTTAAAAAAG-TTGATAAATTATATATTGT
1 AATTT-AATAGTTTTTAATTAGAATTTGGTAAAAATTTAAAAAAGTTTG-TAAATTATATATTAT
*
13592 CACATCAACACTTTAATTTGAATAGTTTTTAATTTAAATATTTTTTAATAGTTTTTTAATTTCCA
64 CACATCAACACTTTAATTTGAATAGTTTTTAATTTAAATATTTTTTAATAGTTTTTAAATTTCCA
*
13657 TTTAAATATTATAATTATGTATTGTCCCATCAACACTTTAAATAATCTTTTAATTATTTTAATTT
129 TTTAAATATTATAATTATGTATTGTCACATCAACACTTTAAATAATCTTTTAATTATTTTAATTT
* *
13722 TAATTATCCTTTTTAAATTATTTTGAAAATAATTTTAAATAT-GTATTTTTAAAAAA-TTCAAAC
194 TAATTATCATTTTTAAATTATTTTAAAAATAATTTTAAATATAGTA-TTTTAAAAAATTTCAAA-
13785 TATTTTT-TAAAATATTTTT-TAATTT
257 TATTTTTATAAAATATTTTTGTAATTT
13810 GAAGTTGAAA
Statistics
Matches: 535, Mismatches: 39, Indels: 49
0.86 0.06 0.08
Matches are distributed among these distances:
303 71 0.13
304 69 0.13
305 4 0.01
306 3 0.01
307 3 0.01
308 15 0.03
309 74 0.14
310 10 0.02
311 4 0.01
313 1 0.00
314 2 0.00
315 3 0.01
316 1 0.00
317 4 0.01
318 2 0.00
320 1 0.00
321 1 0.00
322 5 0.01
324 1 0.00
326 17 0.03
327 6 0.01
328 13 0.02
329 5 0.01
330 15 0.03
331 205 0.38
ACGTcount: A:0.38, C:0.04, G:0.05, T:0.52
Consensus pattern (328 bp):
AATTTAATAGTTTTTAATTAGAATTTGGTAAAAATTTAAAAAAGTTTGTAAATTATATATTATCA
CATCAACACTTTAATTTGAATAGTTTTTAATTTAAATATTTTTTAATAGTTTTTAAATTTCCATT
TAAATATTATAATTATGTATTGTCACATCAACACTTTAAATAATCTTTTAATTATTTTAATTTTA
ATTATCATTTTTAAATTATTTTAAAAATAATTTTAAATATAGTATTTTAAAAAATTTCAAATATT
TTTATAAAATATTTTTGTAATTTTTGAATAATATTATAAATTATTTAAATTATTATTGATAAATT
CGA
Found at i:14175 original size:18 final size:18
Alignment explanation
Indices: 14084--14160 Score: 61
Period size: 18 Copynumber: 4.4 Consensus size: 18
14074 TAAAATTTTA
14084 TTAATTT-AAAGTTTAATT
1 TTAATTTCAAA-TTTAATT
* * *
14102 TTCATTTCAACTTGAATT
1 TTAATTTCAAATTTAATT
**
14120 CCAATTTC--ATTTAATT
1 TTAATTTCAAATTTAATT
* *
14136 TTCATTTCAAATGTAATT
1 TTAATTTCAAATTTAATT
14154 TTAATTT
1 TTAATTT
14161 TAATTTCAAA
Statistics
Matches: 43, Mismatches: 13, Indels: 6
0.69 0.21 0.10
Matches are distributed among these distances:
16 11 0.26
18 30 0.70
19 2 0.05
ACGTcount: A:0.32, C:0.10, G:0.04, T:0.53
Consensus pattern (18 bp):
TTAATTTCAAATTTAATT
Found at i:14197 original size:31 final size:31
Alignment explanation
Indices: 14139--14197 Score: 73
Period size: 31 Copynumber: 1.9 Consensus size: 31
14129 TTTAATTTTC
* * * * *
14139 ATTTCAAATGTAATTTTAATTTTAATTTCAA
1 ATTTAAAATATAACTTTAAATTCAATTTCAA
14170 ATTTAAAATATAACTTTAAATTCAATTT
1 ATTTAAAATATAACTTTAAATTCAATTT
14198 TAATTTTGAA
Statistics
Matches: 23, Mismatches: 5, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
31 23 1.00
ACGTcount: A:0.42, C:0.07, G:0.02, T:0.49
Consensus pattern (31 bp):
ATTTAAAATATAACTTTAAATTCAATTTCAA
Found at i:14213 original size:37 final size:38
Alignment explanation
Indices: 14156--14249 Score: 95
Period size: 37 Copynumber: 2.5 Consensus size: 38
14146 ATGTAATTTT
* * *
14156 AATTTTAA-TTTCAAATTTAAAATATAACTTTAAA-TTC
1 AATTTTAATTTTGAAA-TTAAAATATAAATTTAAACATC
* * *
14193 AATTTTAATTTTGAAGTT-AAATTTAAATTTAAACATG
1 AATTTTAATTTTGAAATTAAAATATAAATTTAAACATC
*
14230 TATTTTAATTTTGAAATTAA
1 AATTTTAATTTTGAAATTAA
14250 TTTCAACTTA
Statistics
Matches: 46, Mismatches: 8, Indels: 5
0.78 0.14 0.08
Matches are distributed among these distances:
36 13 0.28
37 27 0.59
38 6 0.13
ACGTcount: A:0.44, C:0.04, G:0.04, T:0.48
Consensus pattern (38 bp):
AATTTTAATTTTGAAATTAAAATATAAATTTAAACATC
Found at i:14218 original size:6 final size:6
Alignment explanation
Indices: 14150--14225 Score: 53
Period size: 6 Copynumber: 12.3 Consensus size: 6
14140 TTTCAAATGT
* * * * * *
14150 AATTTT AATTTT AATTTCA AATTTAA AATATA ACTTTA AATTCA ATTTTA
1 AATTTA AATTTA AATTT-A AATTT-A AATTTA AATTTA AATTTA AATTTA
* * *
14200 ATTTTG AAGTTA AATTTA AATTTA AA
1 AATTTA AATTTA AATTTA AATTTA AA
14226 CATGTATTTT
Statistics
Matches: 55, Mismatches: 14, Indels: 2
0.77 0.20 0.03
Matches are distributed among these distances:
6 45 0.82
7 10 0.18
ACGTcount: A:0.45, C:0.04, G:0.03, T:0.49
Consensus pattern (6 bp):
AATTTA
Found at i:18566 original size:53 final size:52
Alignment explanation
Indices: 18500--18662 Score: 184
Period size: 53 Copynumber: 3.1 Consensus size: 52
18490 CAAAAAAATA
* *
18500 TTTTTTATCTGATAAAGGTGGTGTCGACCATGGCATGACCAACACCATCAATT
1 TTTTTTATCTGATAAAGTTGGTGTCGACCATGGCATGGCCAACA-CATCAATT
* * * * **
18553 TTTTTTATTTGATAAAGTTCGTGTCGACAATGGCATGGTCAACATCAAAAATT
1 TTTTTTATCTGATAAAGTTGGTGTCGACCATGGCATGGCCAACA-CATCAATT
* ** * *
18606 TTTTTTATCTGATAAAGTTGATGTCGGGCATTGCATGGCCGACAC-TCAATT
1 TTTTTTATCTGATAAAGTTGGTGTCGACCATGGCATGGCCAACACATCAATT
18657 TTTTTT
1 TTTTTT
18663 TAAATATCGT
Statistics
Matches: 90, Mismatches: 20, Indels: 2
0.80 0.18 0.02
Matches are distributed among these distances:
51 10 0.11
52 1 0.01
53 79 0.88
ACGTcount: A:0.27, C:0.17, G:0.18, T:0.38
Consensus pattern (52 bp):
TTTTTTATCTGATAAAGTTGGTGTCGACCATGGCATGGCCAACACATCAATT
Found at i:19547 original size:23 final size:23
Alignment explanation
Indices: 19512--19572 Score: 70
Period size: 23 Copynumber: 2.7 Consensus size: 23
19502 CAATTACGGG
*
19512 AGAAGAAGTAAAAGAGAA-AAAGA
1 AGAAGAAGAAAAAGA-AAGAAAGA
* *
19535 AGAAGGAGAAAAAGAAAGAAATA
1 AGAAGAAGAAAAAGAAAGAAAGA
*
19558 AGAACAAGAAAAAGA
1 AGAAGAAGAAAAAGA
19573 TTATTTTATT
Statistics
Matches: 32, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
22 2 0.06
23 30 0.94
ACGTcount: A:0.70, C:0.02, G:0.25, T:0.03
Consensus pattern (23 bp):
AGAAGAAGAAAAAGAAAGAAAGA
Found at i:19840 original size:25 final size:23
Alignment explanation
Indices: 19812--19866 Score: 76
Period size: 25 Copynumber: 2.3 Consensus size: 23
19802 TTATTATAAG
19812 TTATTTGTTTTGT-TTAATTTAATTT
1 TTATTTGTTTT-TATTAATTT--TTT
19837 TTATTTGTTTTTATTAATTTTTT
1 TTATTTGTTTTTATTAATTTTTT
19860 TTATTTG
1 TTATTTG
19867 GTAGAATAAA
Statistics
Matches: 29, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
23 10 0.34
24 1 0.03
25 18 0.62
ACGTcount: A:0.18, C:0.00, G:0.07, T:0.75
Consensus pattern (23 bp):
TTATTTGTTTTTATTAATTTTTT
Found at i:19944 original size:21 final size:21
Alignment explanation
Indices: 19919--19959 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
19909 GTTTTTAATT
*
19919 TAATTTAATTTTGTTAGTAAG
1 TAATTTAATTTTGTAAGTAAG
*
19940 TAATTTTATTTTGTAAGTAA
1 TAATTTAATTTTGTAAGTAA
19960 TACACATTTG
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.34, C:0.00, G:0.12, T:0.54
Consensus pattern (21 bp):
TAATTTAATTTTGTAAGTAAG
Found at i:20209 original size:22 final size:23
Alignment explanation
Indices: 20184--20236 Score: 65
Period size: 25 Copynumber: 2.3 Consensus size: 23
20174 TTACTCTATT
20184 AAATAAAA-AAATTAATA-AAAAC
1 AAATAAAACAAATTAA-ACAAAAC
20206 AAATAAAAATCAAATTAAACAAAAC
1 AAAT-AAAA-CAAATTAAACAAAAC
20231 AAATAA
1 AAATAA
20237 CTTATAATAA
Statistics
Matches: 27, Mismatches: 0, Indels: 6
0.82 0.00 0.18
Matches are distributed among these distances:
22 4 0.15
23 4 0.15
24 3 0.11
25 16 0.59
ACGTcount: A:0.75, C:0.08, G:0.00, T:0.17
Consensus pattern (23 bp):
AAATAAAACAAATTAAACAAAAC
Found at i:20996 original size:27 final size:26
Alignment explanation
Indices: 20966--21031 Score: 78
Period size: 27 Copynumber: 2.5 Consensus size: 26
20956 ATTCATGGCA
* * *
20966 TGACCAACTCGTATAATATCTATCGCT
1 TGACCACCTCG-ATAATATCCATCGCC
*
20993 TGACCATCCCCGATAATATCCATCGCC
1 TGACCA-CCTCGATAATATCCATCGCC
21020 TGACCACCTCGA
1 TGACCACCTCGA
21032 ATGATACGAC
Statistics
Matches: 33, Mismatches: 5, Indels: 3
0.80 0.12 0.07
Matches are distributed among these distances:
26 5 0.15
27 25 0.76
28 3 0.09
ACGTcount: A:0.27, C:0.35, G:0.12, T:0.26
Consensus pattern (26 bp):
TGACCACCTCGATAATATCCATCGCC
Found at i:23038 original size:20 final size:20
Alignment explanation
Indices: 23008--23045 Score: 60
Period size: 19 Copynumber: 1.9 Consensus size: 20
22998 TCAAAATGTT
23008 TATGTTTTATTTTTTGATTGG
1 TATGTTTTA-TTTTTGATTGG
23029 TATG-TTTATTTTTGATT
1 TATGTTTTATTTTTGATT
23046 AATTTGCATA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
19 9 0.53
20 4 0.24
21 4 0.24
ACGTcount: A:0.16, C:0.00, G:0.16, T:0.68
Consensus pattern (20 bp):
TATGTTTTATTTTTGATTGG
Found at i:28892 original size:53 final size:53
Alignment explanation
Indices: 28830--28937 Score: 153
Period size: 53 Copynumber: 2.0 Consensus size: 53
28820 TTAGTTCCTC
* * *
28830 TTATGTTTGTTTGATGTATATTTTCCATTATGTTTTTTGTTGGTTGTTGGCTG
1 TTATGTTTGTTTGATGTATATTTTCAATTATGCTTTTTGTTGGCTGTTGGCTG
* * * *
28883 TTATTTTTGTTTGGTGTATGTTTTCAATTATGCTTTTTGTTGGCTGTTGGTTG
1 TTATGTTTGTTTGATGTATATTTTCAATTATGCTTTTTGTTGGCTGTTGGCTG
28936 TT
1 TT
28938 CGTTGTGTCG
Statistics
Matches: 48, Mismatches: 7, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
53 48 1.00
ACGTcount: A:0.10, C:0.06, G:0.23, T:0.61
Consensus pattern (53 bp):
TTATGTTTGTTTGATGTATATTTTCAATTATGCTTTTTGTTGGCTGTTGGCTG
Found at i:29181 original size:26 final size:26
Alignment explanation
Indices: 29152--29235 Score: 78
Period size: 26 Copynumber: 3.2 Consensus size: 26
29142 AACCAGCAGC
*
29152 AAACAACCAACAAAAAGCATAATTGA
1 AAACAACCAACAAAAAGCATAATAGA
** * * *
29178 AAACATTCATCAAACAAACATAATAGC
1 AAACAACCAACAAA-AAGCATAATAGA
* * *
29205 TAACAACCAACAAAAGGCCTAATAGA
1 AAACAACCAACAAAAAGCATAATAGA
29231 AAACA
1 AAACA
29236 TACATCAAAC
Statistics
Matches: 42, Mismatches: 15, Indels: 2
0.71 0.25 0.03
Matches are distributed among these distances:
26 23 0.55
27 19 0.45
ACGTcount: A:0.58, C:0.21, G:0.07, T:0.13
Consensus pattern (26 bp):
AAACAACCAACAAAAAGCATAATAGA
Found at i:30046 original size:36 final size:36
Alignment explanation
Indices: 29999--30106 Score: 216
Period size: 36 Copynumber: 3.0 Consensus size: 36
29989 TTCTTTGGGC
29999 CTTATCGATATCGAACGAGCAGGAGTATTAGCTCTA
1 CTTATCGATATCGAACGAGCAGGAGTATTAGCTCTA
30035 CTTATCGATATCGAACGAGCAGGAGTATTAGCTCTA
1 CTTATCGATATCGAACGAGCAGGAGTATTAGCTCTA
30071 CTTATCGATATCGAACGAGCAGGAGTATTAGCTCTA
1 CTTATCGATATCGAACGAGCAGGAGTATTAGCTCTA
30107 ACAATGAATT
Statistics
Matches: 72, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
36 72 1.00
ACGTcount: A:0.31, C:0.19, G:0.22, T:0.28
Consensus pattern (36 bp):
CTTATCGATATCGAACGAGCAGGAGTATTAGCTCTA
Found at i:30367 original size:30 final size:30
Alignment explanation
Indices: 30331--30387 Score: 96
Period size: 30 Copynumber: 1.9 Consensus size: 30
30321 CTTTCATGTG
30331 TTGTTTGGGCAAAGAGTTTGATGGAGATAT
1 TTGTTTGGGCAAAGAGTTTGATGGAGATAT
* *
30361 TTGTTTGTGCAGAGAGTTTGATGGAGA
1 TTGTTTGGGCAAAGAGTTTGATGGAGA
30388 ATGGTCAATT
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.25, C:0.04, G:0.35, T:0.37
Consensus pattern (30 bp):
TTGTTTGGGCAAAGAGTTTGATGGAGATAT
Found at i:32181 original size:26 final size:26
Alignment explanation
Indices: 32145--32201 Score: 96
Period size: 26 Copynumber: 2.2 Consensus size: 26
32135 ATTAAAGGGA
*
32145 ATTTTCTTTGTATGCTCTTAGGTAGC
1 ATTTTCTTTGTATGCTCTCAGGTAGC
*
32171 ATTTTCTTTGTATGCTCTCAGGTAGT
1 ATTTTCTTTGTATGCTCTCAGGTAGC
32197 ATTTT
1 ATTTT
32202 AATGATTTTG
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 29 1.00
ACGTcount: A:0.16, C:0.14, G:0.18, T:0.53
Consensus pattern (26 bp):
ATTTTCTTTGTATGCTCTCAGGTAGC
Found at i:42075 original size:2 final size:2
Alignment explanation
Indices: 42068--42096 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
42058 TACTCCCAAT
42068 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
42097 CGTTTTTAAA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:51501 original size:17 final size:17
Alignment explanation
Indices: 51481--51516 Score: 54
Period size: 17 Copynumber: 2.1 Consensus size: 17
51471 TTATCGAAAC
51481 AAATATATTAAAAATTA
1 AAATATATTAAAAATTA
* *
51498 AAATATATTTAAACTTA
1 AAATATATTAAAAATTA
51515 AA
1 AA
51517 CCTAAATAAA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.61, C:0.03, G:0.00, T:0.36
Consensus pattern (17 bp):
AAATATATTAAAAATTA
Found at i:59670 original size:25 final size:27
Alignment explanation
Indices: 59611--59670 Score: 70
Period size: 28 Copynumber: 2.3 Consensus size: 27
59601 TATTATTACT
*
59611 TAAAATTTATATTTTTTTAGCATCCTAA
1 TAAAATTTATATTTTCTTA-CATCCTAA
* *
59639 TATAATTTATATTTTCTT-CA-CCTAC
1 TAAAATTTATATTTTCTTACATCCTAA
59664 TAAAATT
1 TAAAATT
59671 CAGATAAATC
Statistics
Matches: 28, Mismatches: 4, Indels: 3
0.80 0.11 0.09
Matches are distributed among these distances:
25 10 0.36
26 2 0.07
28 16 0.57
ACGTcount: A:0.35, C:0.13, G:0.02, T:0.50
Consensus pattern (27 bp):
TAAAATTTATATTTTCTTACATCCTAA
Found at i:59864 original size:4 final size:4
Alignment explanation
Indices: 59857--59918 Score: 124
Period size: 4 Copynumber: 15.5 Consensus size: 4
59847 TCTCTCTCCG
59857 ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT
1 ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT
59905 ACAT ACAT ACAT AC
1 ACAT ACAT ACAT AC
59919 CCATTGCTCT
Statistics
Matches: 58, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 58 1.00
ACGTcount: A:0.50, C:0.26, G:0.00, T:0.24
Consensus pattern (4 bp):
ACAT
Found at i:62559 original size:28 final size:28
Alignment explanation
Indices: 62519--62575 Score: 114
Period size: 28 Copynumber: 2.0 Consensus size: 28
62509 TCAGGCCAGG
62519 TAAGTGCCTCCAATTTTTTCGATTTCAA
1 TAAGTGCCTCCAATTTTTTCGATTTCAA
62547 TAAGTGCCTCCAATTTTTTCGATTTCAA
1 TAAGTGCCTCCAATTTTTTCGATTTCAA
62575 T
1 T
62576 GATCCCTTTG
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 29 1.00
ACGTcount: A:0.25, C:0.21, G:0.11, T:0.44
Consensus pattern (28 bp):
TAAGTGCCTCCAATTTTTTCGATTTCAA
Found at i:64643 original size:20 final size:20
Alignment explanation
Indices: 64611--64656 Score: 51
Period size: 20 Copynumber: 2.3 Consensus size: 20
64601 GCATGGTTTA
*
64611 AATTAAGTATAAATA-GATGT
1 AATTAAGTATAAAAATGAT-T
64631 AATTAAG-ATTAAAAATGATT
1 AATTAAGTA-TAAAAATGATT
64651 AATTAA
1 AATTAA
64657 AGCTTAATGA
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
19 1 0.04
20 19 0.83
21 3 0.13
ACGTcount: A:0.54, C:0.00, G:0.11, T:0.35
Consensus pattern (20 bp):
AATTAAGTATAAAAATGATT
Found at i:69037 original size:41 final size:41
Alignment explanation
Indices: 68980--69074 Score: 165
Period size: 41 Copynumber: 2.3 Consensus size: 41
68970 TATTCGTAGT
*
68980 GAATTCTTGTCAAGGTGGAGATTGTTAGAATTG-GATGACTA
1 GAATTCTTGTTAAGGTGGAGATTGTTAGAATTGAG-TGACTA
69021 GAATTCTTGTTAAGGTGGAGATTGTTAGAATTGAGTGACTA
1 GAATTCTTGTTAAGGTGGAGATTGTTAGAATTGAGTGACTA
69062 GAATTCTTGTTAA
1 GAATTCTTGTTAA
69075 AATAAAATTC
Statistics
Matches: 52, Mismatches: 1, Indels: 2
0.95 0.02 0.04
Matches are distributed among these distances:
41 51 0.98
42 1 0.02
ACGTcount: A:0.29, C:0.06, G:0.27, T:0.37
Consensus pattern (41 bp):
GAATTCTTGTTAAGGTGGAGATTGTTAGAATTGAGTGACTA
Found at i:70627 original size:15 final size:15
Alignment explanation
Indices: 70601--70662 Score: 76
Period size: 15 Copynumber: 4.1 Consensus size: 15
70591 TTCATAAATG
70601 TTTGTATAATTTTTTA
1 TTTGT-TAATTTTTTA
70617 TTTGTTAA--TTTTA
1 TTTGTTAATTTTTTA
70630 TCTT-TTAATTTTTTA
1 T-TTGTTAATTTTTTA
70645 TTTGTTAATTTTTATA
1 TTTGTTAATTTTT-TA
70661 TT
1 TT
70663 ACATTTATTG
Statistics
Matches: 41, Mismatches: 0, Indels: 10
0.80 0.00 0.20
Matches are distributed among these distances:
13 10 0.24
14 4 0.10
15 18 0.44
16 9 0.22
ACGTcount: A:0.23, C:0.02, G:0.05, T:0.71
Consensus pattern (15 bp):
TTTGTTAATTTTTTA
Found at i:70630 original size:13 final size:13
Alignment explanation
Indices: 70612--70656 Score: 56
Period size: 13 Copynumber: 3.3 Consensus size: 13
70602 TTGTATAATT
70612 TTTTATTTGTTAA
1 TTTTATTTGTTAA
70625 TTTTATCTT-TTAA
1 TTTTAT-TTGTTAA
70638 TTTTTTATTTGTTAA
1 --TTTTATTTGTTAA
70653 TTTT
1 TTTT
70657 TATATTACAT
Statistics
Matches: 28, Mismatches: 0, Indels: 8
0.78 0.00 0.22
Matches are distributed among these distances:
13 14 0.50
14 4 0.14
15 10 0.36
ACGTcount: A:0.20, C:0.02, G:0.04, T:0.73
Consensus pattern (13 bp):
TTTTATTTGTTAA
Found at i:70668 original size:28 final size:28
Alignment explanation
Indices: 70607--70668 Score: 90
Period size: 28 Copynumber: 2.2 Consensus size: 28
70597 AATGTTTGTA
* *
70607 TAATTTTTTATTTGTTAATTTTATCTTT
1 TAATTTTTTATTTGTTAATTTTATATAT
70635 TAATTTTTTATTTGTTAATTTT-TATAT
1 TAATTTTTTATTTGTTAATTTTATATAT
70662 TACATTT
1 TA-ATTT
70669 ATTGTTATTA
Statistics
Matches: 31, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
27 5 0.16
28 26 0.84
ACGTcount: A:0.24, C:0.03, G:0.03, T:0.69
Consensus pattern (28 bp):
TAATTTTTTATTTGTTAATTTTATATAT
Found at i:79699 original size:18 final size:20
Alignment explanation
Indices: 79661--79699 Score: 55
Period size: 18 Copynumber: 2.0 Consensus size: 20
79651 AGAATTAAAA
*
79661 ATTGATAGACTCGAGAATTT
1 ATTGATAGACTCGAAAATTT
79681 ATTGAT-GACTC-AAAATTT
1 ATTGATAGACTCGAAAATTT
79699 A
1 A
79700 GCTTGAAAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
18 7 0.39
19 5 0.28
20 6 0.33
ACGTcount: A:0.38, C:0.10, G:0.15, T:0.36
Consensus pattern (20 bp):
ATTGATAGACTCGAAAATTT
Found at i:89913 original size:28 final size:28
Alignment explanation
Indices: 89877--89931 Score: 83
Period size: 28 Copynumber: 2.0 Consensus size: 28
89867 ATAGTATAAT
*
89877 TCTTATTTTATTGTTAACTTTGCTACTC
1 TCTTATTTTATTATTAACTTTGCTACTC
* *
89905 TCTTGTTTTATTATTAATTTTGCTACT
1 TCTTATTTTATTATTAACTTTGCTACT
89932 ATTTTAGAGT
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
28 24 1.00
ACGTcount: A:0.18, C:0.15, G:0.07, T:0.60
Consensus pattern (28 bp):
TCTTATTTTATTATTAACTTTGCTACTC
Found at i:96319 original size:14 final size:15
Alignment explanation
Indices: 96300--96332 Score: 50
Period size: 16 Copynumber: 2.2 Consensus size: 15
96290 ATATCATAGC
96300 ATTTATA-AATTTTT
1 ATTTATAGAATTTTT
96314 ATTTATATGAATTTTT
1 ATTTATA-GAATTTTT
96330 ATT
1 ATT
96333 ATTAAAATTA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
14 7 0.41
16 10 0.59
ACGTcount: A:0.33, C:0.00, G:0.03, T:0.64
Consensus pattern (15 bp):
ATTTATAGAATTTTT
Found at i:96449 original size:23 final size:24
Alignment explanation
Indices: 96393--96449 Score: 57
Period size: 23 Copynumber: 2.4 Consensus size: 24
96383 ATTAAAATAA
*
96393 ATTATAATT-ATTTTATAATTTTGT
1 ATTA-AATTAATTTTATAATTTGGT
*
96417 A-TAAATTTAATTTTATGA-TTGGT
1 ATTAAA-TTAATTTTATAATTTGGT
96440 ATTAAATTAA
1 ATTAAATTAA
96450 ATCATTTTAT
Statistics
Matches: 28, Mismatches: 2, Indels: 7
0.76 0.05 0.19
Matches are distributed among these distances:
22 2 0.07
23 13 0.46
24 13 0.46
ACGTcount: A:0.39, C:0.00, G:0.07, T:0.54
Consensus pattern (24 bp):
ATTAAATTAATTTTATAATTTGGT
Found at i:98541 original size:450 final size:445
Alignment explanation
Indices: 97653--98557 Score: 1298
Period size: 450 Copynumber: 2.0 Consensus size: 445
97643 AAGCAGATTA
*
97653 TTATAAACTACAAAATAAAAAGACTGTTGAGAGTAACAAAGAAGCTGTAGCTAGTGCTAATTTGA
1 TTATAAACTACAAAATAAAAAGACTGCTGAGAGTAACAAAGAAGCTGTAGCTAGTGCTAATTTGA
* * ** *
97718 CCGACGAAAGGGGTGATGATTTCTTGTTAGTGTCAAGAGTGAAAGCTCTGAGCTTACGCCTGAGT
66 CCGACGAAAGGAGTGATGATTTCTTATTAGTGTCAAGAGCAAAAGCTCCGAGCTTACGCCTGAGT
*
97783 GGATCCTAGATTCAGGATGTTCTTTCCACATGTGTCCTAACAGAGAATGGTTCTCCACATACAGT
131 GGATCCTAGATTCAGGATGTTCTTTCCACATGTGTCCTAACAGAGAATGGTTCTCCACATACAAT
* *
97848 TCGATTGAAGGTTGAGTTGTGCACATGGGAAACAGTTCATCAGTAAAATAATCGGTATTGGTACT
196 TCGATTGAAGGTTGAGTTGTGCACATGAGAAACAGTTCATCAGTAAAATAATCAGTATTGGTACT
* * *
97913 ATTAAAATTAGGATGCACGATAGGATGCTTAGGACACTCTCAAATGTTAGAATGTACCTGATTTA
261 ATTAAAATTAGGATGCACGATAGGACGCCTAGGACACTCTCAAATGTCAGAATGTACCTGATTTA
*
97978 CGAAAAAAAATTATCTCTTTGAGTATTTTAGACTCAAAAGGTTACAAGATCAACATTGAGTTTAG
326 CGAAAAAAAATTATCTCTTTGAGTATTTTAAACTCAAAAGGTTACAAGATCAACATTGAGTTTAG
* * *
98043 TGACATTAAATTGTCTCGTGAGACTCTCGTTTTGTTAAAAGGTAAAAGGACTAACAATCT
391 CGACATTAAAGTGTCTCGTGAGACTCTCATTTTGTT---A--TAAAAGGACTAACAATCT
* *
98103 TTATAAACTACAAAATAAAAGGACTGCTGAGAGTAACAAAGAAGCTGTAGCTAGTGCTAATTTGG
1 TTATAAACTACAAAATAAAAAGACTGCTGAGAGTAACAAAGAAGCTGTAGCTAGTGCTAATTTGA
* * *
98168 TCGACGAAAGGAGTGATGATTTCTTATTAGTGTCAACGAGCAAAAGCTCCGAGCTTATGTCTGAG
66 CCGACGAAAGGAGTGATGATTTCTTATTAGTGTCAA-GAGCAAAAGCTCCGAGCTTACGCCTGAG
* * *
98233 TGGATCTTAGATTCGGGATGTTCTTTCCACATGTGTTCC-AACAGATAATGGTTCTCCACATACA
130 TGGATCCTAGATTCAGGATGTTCTTTCCACATGTG-TCCTAACAGAGAATGGTTCTCCACATACA
* **
98297 ATTCTG-TTGAAGGTGTGAGTTGTTGTGCACATGAGAAACGGTTCATCCAGTAAGGTAATCAGTA
194 ATTC-GATTGAAGGT-TGA---GTTGTGCACATGAGAAACAGTTCAT-CAGTAAAATAATCAGTA
* *
98361 TTGGTACTGTTAAAATTAGGATGCACGATGGGACGCCTAGGACACTCTCAAATGTCAGATATGTA
253 TTGGTACTATTAAAATTAGGATGCACGATAGGACGCCTAGGACACTCTCAAATGTCAGA-ATGTA
* * * * *
98426 CCTGATTTAC-AAAAAAATCTTATCTCTTTGATTATTTTAAACTCGAAAGGTTGCAGGATCAACA
317 CCTGATTTACGAAAAAAA-ATTATCTCTTTGAGTATTTTAAACTCAAAAGGTTACAAGATCAACA
* * * *
98490 TTGAGTTTAGCGATATTACAGTGTCTCGTGGGACTCTCATTTTG-T-TAAAAGGACTGACAATCT
381 TTGAGTTTAGCGACATTAAAGTGTCTCGTGAGACTCTCATTTTGTTATAAAAGGACTAACAATCT
98553 TTATA
1 TTATA
98558 TTTTGGAAGG
Statistics
Matches: 407, Mismatches: 38, Indels: 20
0.88 0.08 0.04
Matches are distributed among these distances:
450 117 0.29
451 91 0.22
452 7 0.02
455 23 0.06
456 76 0.19
457 93 0.23
ACGTcount: A:0.32, C:0.15, G:0.22, T:0.31
Consensus pattern (445 bp):
TTATAAACTACAAAATAAAAAGACTGCTGAGAGTAACAAAGAAGCTGTAGCTAGTGCTAATTTGA
CCGACGAAAGGAGTGATGATTTCTTATTAGTGTCAAGAGCAAAAGCTCCGAGCTTACGCCTGAGT
GGATCCTAGATTCAGGATGTTCTTTCCACATGTGTCCTAACAGAGAATGGTTCTCCACATACAAT
TCGATTGAAGGTTGAGTTGTGCACATGAGAAACAGTTCATCAGTAAAATAATCAGTATTGGTACT
ATTAAAATTAGGATGCACGATAGGACGCCTAGGACACTCTCAAATGTCAGAATGTACCTGATTTA
CGAAAAAAAATTATCTCTTTGAGTATTTTAAACTCAAAAGGTTACAAGATCAACATTGAGTTTAG
CGACATTAAAGTGTCTCGTGAGACTCTCATTTTGTTATAAAAGGACTAACAATCT
Found at i:103747 original size:47 final size:47
Alignment explanation
Indices: 103693--103783 Score: 139
Period size: 47 Copynumber: 1.9 Consensus size: 47
103683 ATTGATGTAA
*
103693 AAATACAATCGAATACAACATAAACAATTTTT-TTTTTCATTTTTATC
1 AAATACAATAGAATACAACATAAACAATTTTTATTTTT-ATTTTTATC
* *
103740 AAATACAATAGAATACAATATGAACAATTTTTATTTTTATTTTT
1 AAATACAATAGAATACAACATAAACAATTTTTATTTTTATTTTT
103784 TTCGTAAATT
Statistics
Matches: 40, Mismatches: 3, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
47 35 0.88
48 5 0.12
ACGTcount: A:0.42, C:0.11, G:0.03, T:0.44
Consensus pattern (47 bp):
AAATACAATAGAATACAACATAAACAATTTTTATTTTTATTTTTATC
Found at i:109564 original size:29 final size:30
Alignment explanation
Indices: 109520--109597 Score: 88
Period size: 29 Copynumber: 2.6 Consensus size: 30
109510 TTAATTAATT
* *
109520 TTTTTAAAATTTTAAAATTCAAAAAAAATA
1 TTTTTAAAATATTAAAAATCAAAAAAAATA
** *
109550 TTTTTAAAA-ATTAAAAATCATTAAAATTA
1 TTTTTAAAATATTAAAAATCAAAAAAAATA
109579 TTTTTAAAAGTA-TAAAAAT
1 TTTTTAAAA-TATTAAAAAT
109598 GATAAAACTT
Statistics
Matches: 41, Mismatches: 5, Indels: 4
0.82 0.10 0.08
Matches are distributed among these distances:
29 24 0.59
30 16 0.39
31 1 0.02
ACGTcount: A:0.55, C:0.03, G:0.01, T:0.41
Consensus pattern (30 bp):
TTTTTAAAATATTAAAAATCAAAAAAAATA
Found at i:116721 original size:2 final size:2
Alignment explanation
Indices: 116714--116761 Score: 96
Period size: 2 Copynumber: 24.0 Consensus size: 2
116704 TTAAATAACA
116714 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
116756 AT AT AT
1 AT AT AT
116762 NNNNNNNNNN
Statistics
Matches: 46, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 46 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:120222 original size:21 final size:20
Alignment explanation
Indices: 120183--120222 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 20
120173 AAAATATTAA
*
120183 TTAAATTTGAATTTAAAATT
1 TTAAATTTGAATTCAAAATT
*
120203 TTAAAGTTTGAATTCGAAAT
1 TTAAA-TTTGAATTCAAAAT
120223 GATCCGGTTC
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 5 0.29
21 12 0.71
ACGTcount: A:0.42, C:0.03, G:0.10, T:0.45
Consensus pattern (20 bp):
TTAAATTTGAATTCAAAATT
Found at i:120312 original size:28 final size:26
Alignment explanation
Indices: 120266--120327 Score: 72
Period size: 27 Copynumber: 2.3 Consensus size: 26
120256 ATTATATAAT
*
120266 TTAAA-ATATATTAAAAATAAGTTTATA
1 TTAAATATATAATAAAAATAA-TTTA-A
*
120293 TTAAATATATAATAATAATAATTTAA
1 TTAAATATATAATAAAAATAATTTAA
120319 TGTAAATAT
1 T-TAAATAT
120328 TAAAACATAT
Statistics
Matches: 31, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
26 2 0.06
27 16 0.52
28 13 0.42
ACGTcount: A:0.55, C:0.00, G:0.03, T:0.42
Consensus pattern (26 bp):
TTAAATATATAATAAAAATAATTTAA
Found at i:121385 original size:22 final size:22
Alignment explanation
Indices: 121355--121399 Score: 56
Period size: 23 Copynumber: 2.0 Consensus size: 22
121345 TAAGATTTAT
*
121355 TTTTAATAA-ATATAAAATAAA
1 TTTTAATAACAAATAAAATAAA
*
121376 TTTTATATAACAAATAAATTAAA
1 TTTTA-ATAACAAATAAAATAAA
121399 T
1 T
121400 ACATCATTTT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
21 5 0.25
22 4 0.20
23 11 0.55
ACGTcount: A:0.58, C:0.02, G:0.00, T:0.40
Consensus pattern (22 bp):
TTTTAATAACAAATAAAATAAA
Found at i:122730 original size:18 final size:16
Alignment explanation
Indices: 122688--122737 Score: 59
Period size: 15 Copynumber: 3.1 Consensus size: 16
122678 ACTCTGCCCA
122688 ATATATTATTTTAATTT
1 ATATATT-TTTTAATTT
*
122705 A-ATATTTTATAATTT
1 ATATATTTTTTAATTT
122720 CATATATTTTTT-ATTT
1 -ATATATTTTTTAATTT
122736 AT
1 AT
122738 TAAAATTTTA
Statistics
Matches: 29, Mismatches: 2, Indels: 6
0.78 0.05 0.16
Matches are distributed among these distances:
15 10 0.34
16 10 0.34
17 9 0.31
ACGTcount: A:0.34, C:0.02, G:0.00, T:0.64
Consensus pattern (16 bp):
ATATATTTTTTAATTT
Found at i:123563 original size:22 final size:22
Alignment explanation
Indices: 123519--123563 Score: 54
Period size: 22 Copynumber: 2.0 Consensus size: 22
123509 TTGTATTACT
* * *
123519 ATATGTAATTTAAGAGTACTTA
1 ATATATAATTTAAAAATACTTA
*
123541 ATATATAATTTAAAAATAGTTA
1 ATATATAATTTAAAAATACTTA
123563 A
1 A
123564 AGATGTTGTG
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.49, C:0.02, G:0.09, T:0.40
Consensus pattern (22 bp):
ATATATAATTTAAAAATACTTA
Found at i:126641 original size:21 final size:20
Alignment explanation
Indices: 126600--126641 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 20
126590 AAAAAAAATC
*
126600 AAATCTAAATTAAAATCTTG
1 AAATCTAAATTAAAATATTG
*
126620 AAATCTAAAGTTAAATTATTG
1 AAATCTAAA-TTAAAATATTG
126641 A
1 A
126642 TATGACATAA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
20 9 0.47
21 10 0.53
ACGTcount: A:0.50, C:0.07, G:0.07, T:0.36
Consensus pattern (20 bp):
AAATCTAAATTAAAATATTG
Found at i:127044 original size:32 final size:32
Alignment explanation
Indices: 127003--127063 Score: 113
Period size: 32 Copynumber: 1.9 Consensus size: 32
126993 CAAACTTTAC
127003 AGTTGTGCCTCTGCACGAGTATTTTTTTATAT
1 AGTTGTGCCTCTGCACGAGTATTTTTTTATAT
*
127035 AGTTGTGCCTCTGCACGAGTTTTTTTTTA
1 AGTTGTGCCTCTGCACGAGTATTTTTTTA
127064 CTTTTGGTTA
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 28 1.00
ACGTcount: A:0.16, C:0.16, G:0.20, T:0.48
Consensus pattern (32 bp):
AGTTGTGCCTCTGCACGAGTATTTTTTTATAT
Found at i:135067 original size:33 final size:33
Alignment explanation
Indices: 135020--135083 Score: 94
Period size: 33 Copynumber: 1.9 Consensus size: 33
135010 TTTCGAACCT
*
135020 TATGTGAAGATCTAATAATCAGAGTGTTCACTA
1 TATGTGAAGATCTAATAATCAGAATGTTCACTA
*
135053 TATGTGATAG-TCTAATGATCAGAATGTTCAC
1 TATGTGA-AGATCTAATAATCAGAATGTTCAC
135084 CGTTCAAACT
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
33 26 0.93
34 2 0.07
ACGTcount: A:0.34, C:0.12, G:0.19, T:0.34
Consensus pattern (33 bp):
TATGTGAAGATCTAATAATCAGAATGTTCACTA
Found at i:140678 original size:49 final size:49
Alignment explanation
Indices: 140606--140705 Score: 182
Period size: 49 Copynumber: 2.0 Consensus size: 49
140596 CGCAATGAAC
140606 ATTCTGATAATCACTCCATTACGTCAACACACGAGGTTCAAAATTAGCA
1 ATTCTGATAATCACTCCATTACGTCAACACACGAGGTTCAAAATTAGCA
* *
140655 ATTCTGATAATCACTCCATTACGTCAACACTCGGGGTTCAAAATTAGCA
1 ATTCTGATAATCACTCCATTACGTCAACACACGAGGTTCAAAATTAGCA
140704 AT
1 AT
140706 GTTTTAAGAA
Statistics
Matches: 49, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
49 49 1.00
ACGTcount: A:0.35, C:0.24, G:0.13, T:0.28
Consensus pattern (49 bp):
ATTCTGATAATCACTCCATTACGTCAACACACGAGGTTCAAAATTAGCA
Found at i:144173 original size:18 final size:19
Alignment explanation
Indices: 144150--144207 Score: 57
Period size: 19 Copynumber: 2.9 Consensus size: 19
144140 ATGTACTTCA
144150 TATTAATTTTTTATTTT-T
1 TATTAATTTTTTATTTTAT
144168 TATTAAATATTTTT-TTTTAAT
1 TATT-AAT-TTTTTATTTT-AT
*
144189 TTTTAATTTTTTATATTTA
1 TATTAATTTTTTAT-TTTA
144208 AATTCTTTTA
Statistics
Matches: 33, Mismatches: 1, Indels: 10
0.75 0.02 0.23
Matches are distributed among these distances:
18 4 0.12
19 12 0.36
20 10 0.30
21 7 0.21
ACGTcount: A:0.28, C:0.00, G:0.00, T:0.72
Consensus pattern (19 bp):
TATTAATTTTTTATTTTAT
Found at i:154050 original size:60 final size:58
Alignment explanation
Indices: 153973--154371 Score: 255
Period size: 60 Copynumber: 6.8 Consensus size: 58
153963 AAAAAATTTG
153973 GGTGTTGGCCATGCAATGGCCGACACCTCTTTTTTGTCAGAT-AAAAAATAAAATTATTTT
1 GGTGTTGGCCATGCAATGGCCGACA-CTCTTTTTT-TCAGATAAAAAAATAAAATT-TTTT
* * * * *
154033 TGTGTTGGCCATACAAT-GCCTGACACTGCTATTTATT-AGATAAAAAAATCAAATTTTTG
1 GGTGTTGGCCATGCAATGGCC-GACACT-CT-TTTTTTCAGATAAAAAAATAAAATTTTTT
* *
154092 GGTGTTGGCCATGCAATGACCGACACTC-CTTTTTCAGATAAAAAAATTTCAAAATTTTTT
1 GGTGTTGGCCATGCAATGGCCGACACTCTTTTTTTCAGATAAAAAAA--T-AAAATTTTTT
* * * * * * *
154152 GGTGTTGGTCATGCAATGGCCGACAACCCCTTTTCTCGGAT-----AAGAAAA-TTTTG
1 GGTGTTGGCCATGCAATGGCCGAC-ACTCTTTTTTTCAGATAAAAAAATAAAATTTTTT
* * *** *** *
154205 GGTGTTGGTCATGCAATGGCTGACAC-CCCCTTTTCAGATAAAATTTTTTTAAATTTTTTT
1 GGTGTTGGCCATGCAATGGCCGACACTCTTTTTTTCAGATAAAA---AAATAAAATTTTTT
* *** *
154265 GGTGTTGGCCATACAATGGCCGACAC-CCCCTTTTCAGATAAAAAATTTTCAAAATTTTTT
1 GGTGTTGGCCATGCAATGGCCGACACTCTTTTTTTCAGATAAAAAA--AT-AAAATTTTTT
* * * * * *
154325 GGTATTGGCCATACAATGGGCGACACCCTCTTTTCTCGGATAAAAAA
1 GGTGTTGGCCATGCAATGGCCGACACTCT-TTTTTTCAGATAAAAAA
154372 TTTTTAAATT
Statistics
Matches: 271, Mismatches: 43, Indels: 48
0.75 0.12 0.13
Matches are distributed among these distances:
51 9 0.03
52 2 0.01
53 27 0.10
54 4 0.01
56 4 0.01
57 13 0.05
58 1 0.00
59 39 0.14
60 143 0.53
61 8 0.03
62 21 0.08
ACGTcount: A:0.29, C:0.19, G:0.18, T:0.34
Consensus pattern (58 bp):
GGTGTTGGCCATGCAATGGCCGACACTCTTTTTTTCAGATAAAAAAATAAAATTTTTT
Found at i:154239 original size:113 final size:113
Alignment explanation
Indices: 154087--154299 Score: 309
Period size: 113 Copynumber: 1.9 Consensus size: 113
154077 AAAATCAAAT
* *
154087 TTTTGGGTGTTGGCCATGCAATGACCGACACTCCTTTTTCAGATAAAAAAATTTCAAAATTTTTT
1 TTTTGGGTGTTGGCCATGCAATGACCGACACCCCCTTTTCAGATAAAAAAATTTCAAAATTTTTT
* *
154152 GGTGTTGGTCATGCAATGGCCGACAACCCCTTTTCTCGGATAAGAAAA
66 GGTGTTGGCCATACAATGGCCGACAACCCCTTTTCTCGGATAAGAAAA
* * * *** * *
154200 TTTTGGGTGTTGGTCATGCAATGGCTGACACCCCCTTTTCAGATAAAATTTTTTTAAATTTTTTT
1 TTTTGGGTGTTGGCCATGCAATGACCGACACCCCCTTTTCAGATAAAAAAATTTCAAAATTTTTT
*
154265 GGTGTTGGCCATACAATGGCCGACACCCCCTTTTC
66 GGTGTTGGCCATACAATGGCCGACAACCCCTTTTC
154300 AGATAAAAAA
Statistics
Matches: 87, Mismatches: 13, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
113 87 1.00
ACGTcount: A:0.24, C:0.21, G:0.19, T:0.36
Consensus pattern (113 bp):
TTTTGGGTGTTGGCCATGCAATGACCGACACCCCCTTTTCAGATAAAAAAATTTCAAAATTTTTT
GGTGTTGGCCATACAATGGCCGACAACCCCTTTTCTCGGATAAGAAAA
Found at i:154312 original size:62 final size:60
Alignment explanation
Indices: 154200--154391 Score: 258
Period size: 60 Copynumber: 3.2 Consensus size: 60
154190 GATAAGAAAA
* * * * **
154200 TTTTGGGTGTTGGTCATGCAATGGCTGACACCCCCTTTTCAGATAAAATTTTTTTAAATT
1 TTTTTGGTGTTGGCCATACAATGGCCGACACCCCCTTTTCAGATAAAAAATTTTTAAATT
* *
154260 TTTTTGGTGTTGGCCATACAATGGCCGACACCCCCTTTTCAGATAAAAAATTTTCAAAAT
1 TTTTTGGTGTTGGCCATACAATGGCCGACACCCCCTTTTCAGATAAAAAATTTTTAAATT
* * * *
154320 TTTTTGGTATTGGCCATACAATGGGCGACACCCTCTTTTCTCGGATAAAAAATTTTTAAATT
1 TTTTTGGTGTTGGCCATACAATGGCCGACACCC-CCTTT-TCAGATAAAAAATTTTTAAATT
154382 TTTTTGGTGT
1 TTTTTGGTGT
154392 CCGCTTTTTA
Statistics
Matches: 115, Mismatches: 15, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
60 83 0.72
61 4 0.03
62 28 0.24
ACGTcount: A:0.26, C:0.18, G:0.17, T:0.40
Consensus pattern (60 bp):
TTTTTGGTGTTGGCCATACAATGGCCGACACCCCCTTTTCAGATAAAAAATTTTTAAATT
Found at i:155722 original size:19 final size:19
Alignment explanation
Indices: 155698--155741 Score: 88
Period size: 19 Copynumber: 2.3 Consensus size: 19
155688 AGATGAATGA
155698 TTGCTTTTGCTGCAACATT
1 TTGCTTTTGCTGCAACATT
155717 TTGCTTTTGCTGCAACATT
1 TTGCTTTTGCTGCAACATT
155736 TTGCTT
1 TTGCTT
155742 CAATTCCATT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 25 1.00
ACGTcount: A:0.14, C:0.20, G:0.16, T:0.50
Consensus pattern (19 bp):
TTGCTTTTGCTGCAACATT
Found at i:156996 original size:20 final size:19
Alignment explanation
Indices: 156973--157012 Score: 53
Period size: 20 Copynumber: 2.1 Consensus size: 19
156963 TTAAAATATA
*
156973 TATATAGATTTTGGAATTTT
1 TATAAAGATTTT-GAATTTT
*
156993 TATAAATATTTTGAATTTT
1 TATAAAGATTTTGAATTTT
157012 T
1 T
157013 GAAAATTATT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
19 8 0.44
20 10 0.56
ACGTcount: A:0.33, C:0.00, G:0.10, T:0.57
Consensus pattern (19 bp):
TATAAAGATTTTGAATTTT
Found at i:157018 original size:19 final size:21
Alignment explanation
Indices: 156980--157024 Score: 60
Period size: 20 Copynumber: 2.2 Consensus size: 21
156970 ATATATATAG
156980 ATTTTGGAATTTTTATAAA-T
1 ATTTTGGAATTTTTATAAATT
157000 ATTTT-GAATTTTTGA-AAATT
1 ATTTTGGAATTTTT-ATAAATT
157020 ATTTT
1 ATTTT
157025 CATTATTTTT
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
19 11 0.48
20 12 0.52
ACGTcount: A:0.33, C:0.00, G:0.09, T:0.58
Consensus pattern (21 bp):
ATTTTGGAATTTTTATAAATT
Found at i:159440 original size:2 final size:2
Alignment explanation
Indices: 159435--159459 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
159425 TACCATTTAC
159435 AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT A
159460 ATGATTTGAT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:169916 original size:57 final size:57
Alignment explanation
Indices: 169839--169991 Score: 216
Period size: 57 Copynumber: 2.7 Consensus size: 57
169829 TCGTGACGAC
* * ** *
169839 ATCACTAAACGAATGACCTTTGCCTCCTTCACTTGGACCTGAATTGGGTTTGACAGC
1 ATCACTAAATGCATGACCTTTGCCTCCTGAACTTGGACCTGAATTGGGTTTGACAGA
* * *
169896 ATCAGTAAATGCATGACCTTTGCCACCAGAACTTGGACCTGAATTGGGTTTGACAGA
1 ATCACTAAATGCATGACCTTTGCCTCCTGAACTTGGACCTGAATTGGGTTTGACAGA
* *
169953 ATCACTAAATGCATGACCTTTGCCTCCTGGACTAGGACC
1 ATCACTAAATGCATGACCTTTGCCTCCTGAACTTGGACC
169992 ACCGGTCTTG
Statistics
Matches: 83, Mismatches: 13, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
57 83 1.00
ACGTcount: A:0.27, C:0.25, G:0.20, T:0.27
Consensus pattern (57 bp):
ATCACTAAATGCATGACCTTTGCCTCCTGAACTTGGACCTGAATTGGGTTTGACAGA
Found at i:190822 original size:17 final size:17
Alignment explanation
Indices: 190791--190825 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 17
190781 TTATTTTTAT
**
190791 TTTTAAATTTTTAAAAA
1 TTTTAAATTAATAAAAA
190808 TTTTAAATTAATAAAAA
1 TTTTAAATTAATAAAAA
190825 T
1 T
190826 AAAATTATAC
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (17 bp):
TTTTAAATTAATAAAAA
Found at i:193735 original size:14 final size:14
Alignment explanation
Indices: 193693--193746 Score: 54
Period size: 14 Copynumber: 3.6 Consensus size: 14
193683 TCATTTGATT
* *
193693 AAAATTAAAATTTT
1 AAAATTAAAATATA
193707 AAAATTCAAAAAATATA
1 AAAATT---AAAATATA
193724 AAAATTAAAATATA
1 AAAATTAAAATATA
*
193738 AAAACTAAA
1 AAAATTAAA
193747 TGCACAACTT
Statistics
Matches: 34, Mismatches: 3, Indels: 6
0.79 0.07 0.14
Matches are distributed among these distances:
14 22 0.65
17 12 0.35
ACGTcount: A:0.69, C:0.04, G:0.00, T:0.28
Consensus pattern (14 bp):
AAAATTAAAATATA
Found at i:201907 original size:22 final size:23
Alignment explanation
Indices: 201880--201923 Score: 63
Period size: 23 Copynumber: 2.0 Consensus size: 23
201870 AATACATAAT
* *
201880 AAAA-TTATATTTTAATTTTTTA
1 AAAATTTATAATTCAATTTTTTA
201902 AAAATTTATAATTCAATTTTTT
1 AAAATTTATAATTCAATTTTTT
201924 TTTTATATAT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
22 4 0.21
23 15 0.79
ACGTcount: A:0.41, C:0.02, G:0.00, T:0.57
Consensus pattern (23 bp):
AAAATTTATAATTCAATTTTTTA
Found at i:202106 original size:15 final size:16
Alignment explanation
Indices: 202086--202115 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
202076 CTTTCATAGA
202086 TTTTG-ATAATATTTT
1 TTTTGAATAATATTTT
202101 TTTTGAATAATATTT
1 TTTTGAATAATATTT
202116 AGAATTACTT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 5 0.36
16 9 0.64
ACGTcount: A:0.30, C:0.00, G:0.07, T:0.63
Consensus pattern (16 bp):
TTTTGAATAATATTTT
Found at i:209364 original size:4 final size:4
Alignment explanation
Indices: 209355--209381 Score: 54
Period size: 4 Copynumber: 6.8 Consensus size: 4
209345 GAGATTAAAC
209355 TTTA TTTA TTTA TTTA TTTA TTTA TTT
1 TTTA TTTA TTTA TTTA TTTA TTTA TTT
209382 TGTCAGTCCC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 23 1.00
ACGTcount: A:0.22, C:0.00, G:0.00, T:0.78
Consensus pattern (4 bp):
TTTA
Found at i:227334 original size:18 final size:18
Alignment explanation
Indices: 227311--227356 Score: 65
Period size: 18 Copynumber: 2.6 Consensus size: 18
227301 TTTGTTCACA
* * *
227311 GGTTTTGGTGTTGGGTGT
1 GGTTTTGGAGTTGGATGG
227329 GGTTTTGGAGTTGGATGG
1 GGTTTTGGAGTTGGATGG
227347 GGTTTTGGAG
1 GGTTTTGGAG
227357 GTCTGTTTTC
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 25 1.00
ACGTcount: A:0.07, C:0.00, G:0.50, T:0.43
Consensus pattern (18 bp):
GGTTTTGGAGTTGGATGG
Found at i:248070 original size:13 final size:13
Alignment explanation
Indices: 248048--248096 Score: 53
Period size: 13 Copynumber: 3.6 Consensus size: 13
248038 CTTTTGGAGT
*
248048 ATTTGGTACTTGA
1 ATTTGATACTTGA
*
248061 ATTTGATACTTTTTA
1 ATTTGATAC--TTGA
248076 ATTTGATACTTGA
1 ATTTGATACTTGA
*
248089 ACTTGATA
1 ATTTGATA
248097 TTTTTTCCTA
Statistics
Matches: 30, Mismatches: 4, Indels: 4
0.79 0.11 0.11
Matches are distributed among these distances:
13 18 0.60
15 12 0.40
ACGTcount: A:0.29, C:0.08, G:0.14, T:0.49
Consensus pattern (13 bp):
ATTTGATACTTGA
Found at i:248085 original size:28 final size:28
Alignment explanation
Indices: 248048--248102 Score: 83
Period size: 28 Copynumber: 2.0 Consensus size: 28
248038 CTTTTGGAGT
* *
248048 ATTTGGTACTTGAATTTGATACTTTTTA
1 ATTTGATACTTGAACTTGATACTTTTTA
*
248076 ATTTGATACTTGAACTTGATATTTTTT
1 ATTTGATACTTGAACTTGATACTTTTT
248103 CCTAATCTGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
28 24 1.00
ACGTcount: A:0.25, C:0.07, G:0.13, T:0.55
Consensus pattern (28 bp):
ATTTGATACTTGAACTTGATACTTTTTA
Found at i:248422 original size:31 final size:31
Alignment explanation
Indices: 248379--248489 Score: 113
Period size: 31 Copynumber: 3.6 Consensus size: 31
248369 CCAACTTAAA
*
248379 AAAAAAAGTGTCAAGTTTAGGTATCAAATTAG
1 AAAAAAA-TGTCAAATTTAGGTATCAAATTAG
248411 AAAAAAATGTCAAATTT-GAGTATCAAATT-G
1 AAAAAAATGTCAAATTTAG-GTATCAAATTAG
**
248441 AACCAAAAA--AAAAATTTAGGTATCAAATTAG
1 AA--AAAAATGTCAAATTTAGGTATCAAATTAG
* *
248472 GAAAAAATATCAAATTTA
1 AAAAAAATGTCAAATTTA
248490 AGTACCAAGT
Statistics
Matches: 66, Mismatches: 6, Indels: 15
0.76 0.07 0.17
Matches are distributed among these distances:
29 5 0.08
30 20 0.30
31 29 0.44
32 12 0.18
ACGTcount: A:0.53, C:0.07, G:0.13, T:0.27
Consensus pattern (31 bp):
AAAAAAATGTCAAATTTAGGTATCAAATTAG
Found at i:249088 original size:23 final size:24
Alignment explanation
Indices: 249049--249094 Score: 76
Period size: 24 Copynumber: 2.0 Consensus size: 24
249039 GTGATGCATA
*
249049 AACATAAAAAACTTTTAGGACCAT
1 AACAAAAAAAACTTTTAGGACCAT
249073 AACAAAAAAAAC-TTTAGGACCA
1 AACAAAAAAAACTTTTAGGACCA
249095 CGGGAGAAAA
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
23 10 0.48
24 11 0.52
ACGTcount: A:0.54, C:0.17, G:0.09, T:0.20
Consensus pattern (24 bp):
AACAAAAAAAACTTTTAGGACCAT
Found at i:263178 original size:18 final size:19
Alignment explanation
Indices: 263144--263179 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
263134 TTTATATATA
*
263144 TTAAAAAAAGAGATAATTT
1 TTAAAAAAAAAGATAATTT
263163 TTAAAAAAAAAG-TAATT
1 TTAAAAAAAAAGATAATT
263180 ATTTTTCTTA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 5 0.31
19 11 0.69
ACGTcount: A:0.61, C:0.00, G:0.08, T:0.31
Consensus pattern (19 bp):
TTAAAAAAAAAGATAATTT
Found at i:266628 original size:24 final size:26
Alignment explanation
Indices: 266601--266648 Score: 66
Period size: 24 Copynumber: 1.9 Consensus size: 26
266591 AGAGAAATGT
266601 AAATG-TGATATATGA-A-ATTATGAG
1 AAATGATGA-ATATGAGAGATTATGAG
266625 AAATGATGAATATGAGAGATTATG
1 AAATGATGAATATGAGAGATTATG
266649 CTCATGTAGA
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
24 11 0.52
25 4 0.19
26 6 0.29
ACGTcount: A:0.46, C:0.00, G:0.23, T:0.31
Consensus pattern (26 bp):
AAATGATGAATATGAGAGATTATGAG
Found at i:266783 original size:48 final size:46
Alignment explanation
Indices: 266711--266840 Score: 122
Period size: 48 Copynumber: 2.8 Consensus size: 46
266701 ACACTAGCGC
*
266711 GCCCTCTA-T-TTAGCACATTTCGTGCCCTCTGTTCAGCA-TTGTGTGT
1 GCCCTCTATTATTAGCAC-TTACGTGCCCTCTGTT-AGCACTT-TGTGT
*
266757 GCCCTCTATTATTAGCACTTCACGTGCCCTTTGGTTAGCACTTTGTGT
1 GCCCTCTATTATTAGCACTT-ACGTGCCCTCT-GTTAGCACTTTGTGT
* * * * *
266805 GCTCTCTGTTACCTAACACTTATGTGCCCTCTGTTA
1 GCCCTCTATTA-TTAGCACTTACGTGCCCTCTGTTA
266841 AGTACTTCGG
Statistics
Matches: 70, Mismatches: 8, Indels: 11
0.79 0.09 0.12
Matches are distributed among these distances:
46 8 0.11
47 7 0.10
48 43 0.61
49 12 0.17
ACGTcount: A:0.15, C:0.28, G:0.18, T:0.39
Consensus pattern (46 bp):
GCCCTCTATTATTAGCACTTACGTGCCCTCTGTTAGCACTTTGTGT
Found at i:270081 original size:143 final size:142
Alignment explanation
Indices: 269799--270101 Score: 353
Period size: 143 Copynumber: 2.1 Consensus size: 142
269789 TAATGGTTGA
** * * * * *
269799 ATTAATTATTAAC-TTTAATTTTTGGTAAATTACAAGAGGATAACAAAGCCTTAACAGCAACGCA
1 ATTAATTATTAACTTTTTTTTTTTGGTAAATGACAAGAGGAGAACAAAACCCTAACAGCAACACA
* *
269863 ACTAGCGCAACTCAAACCTAAACCACATCTGGAATGGTGAACACTCTGACCTTCAGGGGGCCAAC
66 ACTAGCGCAACTCAAACCTAAACCACATCTGGAATGGTGAACACCCTGACCTTCAGAGGGCCAAC
269928 ACACGAATTCAG
131 ACACGAATTCAG
* ** * *
269940 ATTAATTATTAACTTTTTTTTCTTTGGTGAATGACAAGAGGAGGGCAAAACCCTAACAGTAGCAC
1 ATTAATTATTAACTTTTTTTT-TTTGGTAAATGACAAGAGGAGAACAAAACCCTAACAGCAACAC
* * * * *
270005 AACTAGTGCGACTCAAA-CTCAGACCACATCTGGGATGGTGAATACCCTGACCATT-AGAGGGCC
65 AACTAGCGCAACTCAAACCT-AAACCACATCTGGAATGGTGAACACCCTGACC-TTCAGAGGGCC
*
270068 AACACAC-AGATTCAT
128 AACACACGA-ATTCAG
*
270083 ATTAACTATTAACTTTTTT
1 ATTAATTATTAACTTTTTT
270102 GGTGAATTAC
Statistics
Matches: 136, Mismatches: 21, Indels: 8
0.82 0.13 0.05
Matches are distributed among these distances:
141 13 0.10
142 8 0.06
143 113 0.83
144 2 0.01
ACGTcount: A:0.35, C:0.21, G:0.17, T:0.26
Consensus pattern (142 bp):
ATTAATTATTAACTTTTTTTTTTTGGTAAATGACAAGAGGAGAACAAAACCCTAACAGCAACACA
ACTAGCGCAACTCAAACCTAAACCACATCTGGAATGGTGAACACCCTGACCTTCAGAGGGCCAAC
ACACGAATTCAG
Found at i:271142 original size:59 final size:58
Alignment explanation
Indices: 271087--271240 Score: 254
Period size: 59 Copynumber: 2.6 Consensus size: 58
271077 TTAAAAACGG
* * *
271087 AATTTTTAGACACTCAGGGGTAAAATGGTAATTTTTAGAAAAATCGAGATCAAAAACAA
1 AATTTTTGGACA-TCGGGGGTAAAATGGTAATTTTTAGAAAAATCGAGATAAAAAACAA
271146 AATTTTTGGACATACGGGGGTAAAATGGTAATTTTTAGAAAAATCGAGATAAAAAACAA
1 AATTTTTGGACAT-CGGGGGTAAAATGGTAATTTTTAGAAAAATCGAGATAAAAAACAA
271205 AATTTTTGGACATTCGGGGGTAAAATGGTAATTTTT
1 AATTTTTGGACA-TCGGGGGTAAAATGGTAATTTTT
271241 GATATTTTTG
Statistics
Matches: 90, Mismatches: 3, Indels: 4
0.93 0.03 0.04
Matches are distributed among these distances:
58 1 0.01
59 88 0.98
60 1 0.01
ACGTcount: A:0.42, C:0.08, G:0.20, T:0.31
Consensus pattern (58 bp):
AATTTTTGGACATCGGGGGTAAAATGGTAATTTTTAGAAAAATCGAGATAAAAAACAA
Found at i:271152 original size:30 final size:29
Alignment explanation
Indices: 271116--271211 Score: 77
Period size: 30 Copynumber: 3.2 Consensus size: 29
271106 GTAAAATGGT
271116 AATTTTTAGAAAAATCGAGATCAAAAACAA
1 AATTTTTAGAAAAATCGAGAT-AAAAACAA
* * * * * ****
271146 AATTTTTGGACATA-CGGGGGTAAAATGGT
1 AATTTTTAGAAAAATC-GAGATAAAAACAA
271175 AATTTTTAGAAAAATCGAGATAAAAAACAA
1 AATTTTTAGAAAAATCGAGAT-AAAAACAA
271205 AATTTTT
1 AATTTTT
271212 GGACATTCGG
Statistics
Matches: 45, Mismatches: 18, Indels: 6
0.65 0.26 0.09
Matches are distributed among these distances:
29 19 0.42
30 26 0.58
ACGTcount: A:0.48, C:0.07, G:0.16, T:0.29
Consensus pattern (29 bp):
AATTTTTAGAAAAATCGAGATAAAAACAA
Found at i:271170 original size:29 final size:29
Alignment explanation
Indices: 271138--271229 Score: 69
Period size: 29 Copynumber: 3.1 Consensus size: 29
271128 AATCGAGATC
271138 AAAAACAAAATTTTTGGACATACGGGGGT
1 AAAAACAAAATTTTTGGACATACGGGGGT
**** * * * * *
271167 AAAATGGTAATTTTTAGAAAAATC-GAGAT
1 AAAAACAAAATTTTTGGACATA-CGGGGGT
*
271196 AAAAAACAAAATTTTTGGACATTCGGGGGT
1 -AAAAACAAAATTTTTGGACATACGGGGGT
271226 AAAA
1 AAAA
271230 TGGTAATTTT
Statistics
Matches: 41, Mismatches: 19, Indels: 6
0.62 0.29 0.09
Matches are distributed among these distances:
29 23 0.56
30 18 0.44
ACGTcount: A:0.46, C:0.08, G:0.21, T:0.26
Consensus pattern (29 bp):
AAAAACAAAATTTTTGGACATACGGGGGT
Found at i:271261 original size:30 final size:30
Alignment explanation
Indices: 271220--271512 Score: 197
Period size: 30 Copynumber: 9.9 Consensus size: 30
271210 TTGGACATTC
* *
271220 GGGGGTAAAATGGTAATTTTT-GATATTTTT
1 GGGGTTAAAATGGTAATTTTTGGA-AGTTTT
*
271250 GGGGTTAAAATGG-AATTTTTGGAAGTTTA
1 GGGGTTAAAATGGTAATTTTTGGAAGTTTT
* * *
271279 GGGG-TAAATTGATAATTTTTGAAAGTTTT
1 GGGGTTAAAATGGTAATTTTTGGAAGTTTT
* * *
271308 AGGGTTAAAATTG-AGATTTTTGGAAG-TTC
1 GGGGTTAAAATGGTA-ATTTTTGGAAGTTTT
* * *
271337 GGGGGTAAAATGGTAATTTTTAGAAGTTTC
1 GGGGTTAAAATGGTAATTTTTGGAAGTTTT
* * * *
271367 GAGGTCAAAATTGTGATTTTTGGAAG-TTT
1 GGGGTTAAAATGGTAATTTTTGGAAGTTTT
* * * **
271396 AGGGATAAAATGATAATTTTTAAAAGTTTT
1 GGGGTTAAAATGGTAATTTTTGGAAGTTTT
* *
271426 GGGGTTAAAATTGG-GATTTTTGGAAG-TTC
1 GGGGTTAAAA-TGGTAATTTTTGGAAGTTTT
* * * **
271455 GAGAGTAAAAAAGGTAATTTTCAGAAGTTTT
1 G-GGGTTAAAATGGTAATTTTTGGAAGTTTT
** * * *
271486 AAGGTTAAAATCGAAATTTTTGAAAGT
1 GGGGTTAAAATGGTAATTTTTGGAAGT
271513 CCAAGGGTAT
Statistics
Matches: 195, Mismatches: 57, Indels: 22
0.71 0.21 0.08
Matches are distributed among these distances:
28 6 0.03
29 79 0.41
30 106 0.54
31 4 0.02
ACGTcount: A:0.33, C:0.02, G:0.26, T:0.39
Consensus pattern (30 bp):
GGGGTTAAAATGGTAATTTTTGGAAGTTTT
Found at i:271344 original size:59 final size:59
Alignment explanation
Indices: 271206--271612 Score: 346
Period size: 59 Copynumber: 6.9 Consensus size: 59
271196 AAAAAACAAA
* * * * *
271206 ATTTTTGGACA-TTCGGGGGTAAAATGGTAATTTTTGATATTTTTGGGGTTAAAATGGA-
1 ATTTTTGGA-AGTTCAGGGGTAAAATGATAATTTTTGAAAGTTTTGGGGTTAAAATTGAG
* * *
271264 ATTTTTGGAAGTTTAGGGGTAAATTGATAATTTTTGAAAGTTTTAGGGTTAAAATTGAG
1 ATTTTTGGAAGTTCAGGGGTAAAATGATAATTTTTGAAAGTTTTGGGGTTAAAATTGAG
* * * * * *
271323 ATTTTTGGAAGTTCGGGGGTAAAATGGTAATTTTT-AGAAGTTTCGAGGTCAAAATTGTG
1 ATTTTTGGAAGTTCAGGGGTAAAATGATAATTTTTGA-AAGTTTTGGGGTTAAAATTGAG
* * * *
271382 ATTTTTGGAAGTTTAGGGATAAAATGATAATTTTTAAAAGTTTTGGGGTTAAAATTGGG
1 ATTTTTGGAAGTTCAGGGGTAAAATGATAATTTTTGAAAGTTTTGGGGTTAAAATTGAG
* * * * ** * *
271441 ATTTTTGGAAGTTC-GAGAGTAAAAAAGGTAA-TTTTCAGAAGTTTTAAGGTTAAAATCGAA
1 ATTTTTGGAAGTTCAG-GGGT-AAAATGATAATTTTTGA-AAGTTTTGGGGTTAAAATTGAG
* * * * * * *
271501 ATTTTTGAAAGTCCAAGGGTATAAAT-ATAATTTTTGAAAGTTTCGAGGTCAAAA-TCAGG
1 ATTTTTGGAAGTTCAGGGGTA-AAATGATAATTTTTGAAAGTTTTGGGGTTAAAATTGA-G
* * * *
271560 A-TTTTGAAAGTCCCGAGGTAAAAAT-ATAATTTTTGAAAGTTTTGGGGTTAAAA
1 ATTTTTGGAAGTTCAGGGGT-AAAATGATAATTTTTGAAAGTTTTGGGGTTAAAA
271613 ATATAATTTT
Statistics
Matches: 282, Mismatches: 55, Indels: 24
0.78 0.15 0.07
Matches are distributed among these distances:
57 1 0.00
58 95 0.34
59 137 0.49
60 49 0.17
ACGTcount: A:0.34, C:0.04, G:0.24, T:0.38
Consensus pattern (59 bp):
ATTTTTGGAAGTTCAGGGGTAAAATGATAATTTTTGAAAGTTTTGGGGTTAAAATTGAG
Found at i:271614 original size:30 final size:29
Alignment explanation
Indices: 271233--271623 Score: 149
Period size: 29 Copynumber: 13.3 Consensus size: 29
271223 GGTAAAATGG
* * *
271233 TAATTTTTGATATTTTTGGGGTTAAAATG
1 TAATTTTTGAAAGTTTTGGGGTTAAAATA
* * * *
271262 GAATTTTTGGAAGTTTAGGGG-TAAATTGA
1 TAATTTTTGAAAGTTTTGGGGTTAAAAT-A
*
271291 TAATTTTTGAAAGTTTTAGGGTTAAAAT-
1 TAATTTTTGAAAGTTTTGGGGTTAAAATA
* * * *
271319 TGAGATTTTTGGAAG-TTCGGGGGTAAAATGG
1 T-A-ATTTTTGAAAGTTTTGGGGTTAAAAT-A
* * * *
271350 TAATTTTT-AGAAGTTTCGAGGTCAAAATTG
1 TAATTTTTGA-AAGTTTTGGGGTTAAAA-TA
* * * *
271380 TGATTTTTGGAAG-TTTAGGGATAAAATGA
1 TAATTTTTGAAAGTTTTGGGGTTAAAAT-A
*
271409 TAATTTTTAAAAGTTTTGGGGTTAAAAT-
1 TAATTTTTGAAAGTTTTGGGGTTAAAATA
* * * * *
271437 TGGGATTTTTGGAAG-TTCGAGAG-TAAAAAA
1 T--AATTTTTGAAAGTTTTG-GGGTTAAAATA
* **
271467 GGTAA-TTTTCAGAAGTTTTAAGGTTAAAATCGA
1 --TAATTTTTGA-AAGTTTTGGGGTTAAAAT--A
****
271500 -AATTTTTGAAAGTCCAAGGG-TATAAATA
1 TAATTTTTGAAAGTTTTGGGGTTA-AAATA
* * *
271528 TAATTTTTGAAAGTTTCGAGGTCAAAATCA
1 TAATTTTTGAAAGTTTTGGGGTTAAAAT-A
** *** * *
271558 GGA-TTTTGAAAGTCCCGAGGTAAAAATA
1 TAATTTTTGAAAGTTTTGGGGTTAAAATA
271586 TAATTTTTGAAAGTTTTGGGGTTAAAAATA
1 TAATTTTTGAAAGTTTTGGGGTT-AAAATA
271616 TAATTTTT
1 TAATTTTT
271624 AGATAATTTA
Statistics
Matches: 262, Mismatches: 70, Indels: 59
0.67 0.18 0.15
Matches are distributed among these distances:
28 11 0.04
29 140 0.53
30 95 0.36
31 14 0.05
32 1 0.00
33 1 0.00
ACGTcount: A:0.35, C:0.04, G:0.23, T:0.39
Consensus pattern (29 bp):
TAATTTTTGAAAGTTTTGGGGTTAAAATA
Found at i:271865 original size:6 final size:6
Alignment explanation
Indices: 271856--271951 Score: 78
Period size: 6 Copynumber: 16.7 Consensus size: 6
271846 TTTGGACATT
*
271856 AATTTA AATTTA AATTTA AACTTA AATTTA TAA--TA AATTTA AATATT-
1 AATTTA AATTTA AATTTA AATTTA AATTTA -AATTTA AATTTA AAT-TTA
* * * * *
271903 AA-GTA AATTTA AACTTA AA-ATA AATTTA ATTTTA AA-ATA AATTTA
1 AATTTA AATTTA AATTTA AATTTA AATTTA AATTTA AATTTA AATTTA
271948 AATT
1 AATT
271952 CTGTTGGGTC
Statistics
Matches: 71, Mismatches: 11, Indels: 16
0.72 0.11 0.16
Matches are distributed among these distances:
4 3 0.04
5 12 0.17
6 52 0.73
7 4 0.06
ACGTcount: A:0.53, C:0.02, G:0.01, T:0.44
Consensus pattern (6 bp):
AATTTA
Found at i:271892 original size:17 final size:16
Alignment explanation
Indices: 271856--271951 Score: 102
Period size: 17 Copynumber: 5.6 Consensus size: 16
271846 TTTGGACATT
271856 AATTTAAATTTAAATTTA
1 AATTTAAATTTAAA--TA
*
271874 AACTTAAATTTATAATA
1 AATTTAAATTTA-AATA
*
271891 AATTTAAATATTAAGTA
1 AATTTAAAT-TTAAATA
*
271908 AATTTAAACTTAAAATA
1 AATTTAAA-TTTAAATA
*
271925 AATTTAATTTTAAAATA
1 AATTTAAATTT-AAATA
271942 AATTTAAATT
1 AATTTAAATT
271952 CTGTTGGGTC
Statistics
Matches: 66, Mismatches: 8, Indels: 9
0.80 0.10 0.11
Matches are distributed among these distances:
16 2 0.03
17 47 0.71
18 15 0.23
19 2 0.03
ACGTcount: A:0.53, C:0.02, G:0.01, T:0.44
Consensus pattern (16 bp):
AATTTAAATTTAAATA
Found at i:272357 original size:88 final size:88
Alignment explanation
Indices: 272208--272386 Score: 358
Period size: 88 Copynumber: 2.0 Consensus size: 88
272198 TGTGATTTCA
272208 CTCCATTCTTTTGAAATTTCAAAGAGATTGGAGTTTATCACTGTAGTCTTTGAGTCTGGTTTCAC
1 CTCCATTCTTTTGAAATTTCAAAGAGATTGGAGTTTATCACTGTAGTCTTTGAGTCTGGTTTCAC
272273 TGATTTGGTCTTCTCCTCAGTAT
66 TGATTTGGTCTTCTCCTCAGTAT
272296 CTCCATTCTTTTGAAATTTCAAAGAGATTGGAGTTTATCACTGTAGTCTTTGAGTCTGGTTTCAC
1 CTCCATTCTTTTGAAATTTCAAAGAGATTGGAGTTTATCACTGTAGTCTTTGAGTCTGGTTTCAC
272361 TGATTTGGTCTTCTCCTCAGTAT
66 TGATTTGGTCTTCTCCTCAGTAT
272384 CTC
1 CTC
272387 ATTAGGAAGA
Statistics
Matches: 91, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
88 91 1.00
ACGTcount: A:0.20, C:0.19, G:0.18, T:0.43
Consensus pattern (88 bp):
CTCCATTCTTTTGAAATTTCAAAGAGATTGGAGTTTATCACTGTAGTCTTTGAGTCTGGTTTCAC
TGATTTGGTCTTCTCCTCAGTAT
Found at i:273081 original size:206 final size:206
Alignment explanation
Indices: 272361--273268 Score: 1359
Period size: 206 Copynumber: 4.4 Consensus size: 206
272351 CTGGTTTCAC
* * * ** ** *
272361 TGATTTGGTCTTCTCCTCAGTATCTCATTAGGAAGATGACCGCATCACTTGTTTTGATCCACTTC
1 TGATTTGGTCTTCTTCTCAGTATCTCATCAGGAAGATGACCGCGTCGTTTGTTTCAATCCGCTTC
* * * * * *
272426 TCTGTGTTTCATCAAGAAGACGGATTTGGTTCACTTCTCCGTATCTCATCAGGAAGCTAACCATT
66 TCTGTATCTCATCAGGAAGACGAATTTGGTACACTTCTCAGTATCTCATCAGGAAGCTAACCATT
* *
272491 TTATTGCTTCGACCTGCTTCTTAGTATCTCATCAGGAAGTTGGGGTTCGAAGATTTGCTCACATC
131 TTATTGCTTCGACCTGCTTCTCAGTATCTCATCAGGAAGCTGGGGTTCGAAGATTTGCTCACATC
272556 GAGCGTGGGTT
196 GAGCGTGGGTT
* *
272567 TGATTTAGGTCTTCTTTTCAGTATCTCATCAGGAAGATGACCGCGTCGTTTGTCTCAATCCGCTT
1 TGATTT-GGTCTTCTTCTCAGTATCTCATCAGGAAGATGACCGCGTCGTTTGTTTCAATCCGCTT
* *
272632 CTCTGTATCTCATCAGGAAGACGAATTTGATACACTTCTCAGTATCTCATCAAGAAGCTAACCAT
65 CTCTGTATCTCATCAGGAAGACGAATTTGGTACACTTCTCAGTATCTCATCAGGAAGCTAACCAT
* * * *
272697 TTTATTGCTTCGACCTGCTTCTCAGTGTCTCATTAGGAAGTTGGGGTTTGAAGATTTGCTCAC-T
130 TTTATTGCTTCGACCTGCTTCTCAGTATCTCATCAGGAAGCTGGGGTTCGAAGATTTGCTCACAT
*
272761 CGAACGTGGGTT
195 CGAGCGTGGGTT
* *
272773 TGATTTGGTCTTCTTCTCAATATCTCATCAGGAAGATGACCGTGTCGTTTGTTTCAATCCGCTTC
1 TGATTTGGTCTTCTTCTCAGTATCTCATCAGGAAGATGACCGCGTCGTTTGTTTCAATCCGCTTC
* *
272838 TCTATATCTCATCAAGAAGACGAATTTGGTACACTTCTCAGTATCTCATCAGGAAGCTAACCATT
66 TCTGTATCTCATCAGGAAGACGAATTTGGTACACTTCTCAGTATCTCATCAGGAAGCTAACCATT
* * * *
272903 TTATTGCTTCGACCTGCTTCTCAATGTCTCATCAGGAAACTGGGGTTCGAAGATTTGCTCACATT
131 TTATTGCTTCGACCTGCTTCTCAGTATCTCATCAGGAAGCTGGGGTTCGAAGATTTGCTCACATC
272968 GAGCGTGGGTT
196 GAGCGTGGGTT
* * * * * *
272979 TGAATTGGTCTTCTTCTCTGTATCTCATCAAGAAGATGACCGTGTCGTTTGTTTTAATCTGCTTC
1 TGATTTGGTCTTCTTCTCAGTATCTCATCAGGAAGATGACCGCGTCGTTTGTTTCAATCCGCTTC
* *
273044 TCTGTATCTTATCAGGAAGACGAATTTGGTCCACTTCTCAGTATCTCATCAGGAAGCTAACCATT
66 TCTGTATCTCATCAGGAAGACGAATTTGGTACACTTCTCAGTATCTCATCAGGAAGCTAACCATT
* * * *
273109 TTATTGTTTCGACCCGCTTCTCAGTATCTCATCAGGAAGCTGGGATTCGAAGATTTGCTCACCTC
131 TTATTGCTTCGACCTGCTTCTCAGTATCTCATCAGGAAGCTGGGGTTCGAAGATTTGCTCACATC
273174 GAGCGTGGGTT
196 GAGCGTGGGTT
* * *
273185 TGATTTTGTTTTCTTCTCAATATCTCATCAGGAAGATGACCGCGTCGTTTGTTTCAATCCGCTTC
1 TGATTTGGTCTTCTTCTCAGTATCTCATCAGGAAGATGACCGCGTCGTTTGTTTCAATCCGCTTC
*
273250 TCTGTATCTCCTCAGGAAG
66 TCTGTATCTCATCAGGAAG
273269 CTAACCATTT
Statistics
Matches: 633, Mismatches: 67, Indels: 4
0.90 0.10 0.01
Matches are distributed among these distances:
205 173 0.27
206 296 0.47
207 164 0.26
ACGTcount: A:0.22, C:0.22, G:0.20, T:0.36
Consensus pattern (206 bp):
TGATTTGGTCTTCTTCTCAGTATCTCATCAGGAAGATGACCGCGTCGTTTGTTTCAATCCGCTTC
TCTGTATCTCATCAGGAAGACGAATTTGGTACACTTCTCAGTATCTCATCAGGAAGCTAACCATT
TTATTGCTTCGACCTGCTTCTCAGTATCTCATCAGGAAGCTGGGGTTCGAAGATTTGCTCACATC
GAGCGTGGGTT
Found at i:274079 original size:100 final size:101
Alignment explanation
Indices: 273938--274320 Score: 435
Period size: 100 Copynumber: 3.9 Consensus size: 101
273928 ATATCGGGCT
* * * *** *
273938 CGCCATTGCAACTTAAACCTTTCCCCTTCAAATCTTCGTGGTACTGGATTCGCCGTTGCGGCT-T
1 CGCCGTTGCGACTTAAACCTTTCCCTTTTGTATCTTCGTGGTACTGGATCCGCCGTTGCGGCTCT
*
274002 AAATCTTTCTCTTCTTGTCTTCTGAGGTTCACGGTC
66 AAATCTTTCCCTTCTTGTCTTCTGAGGTTCACGGTC
* *
274038 CGCCGTTGTGACTTAAACCTTTCCCTTTTGTATCTTTGTGGTACTGGATCCGCCGTTGCGG-TCT
1 CGCCGTTGCGACTTAAACCTTTCCCTTTTGTATCTTCGTGGTACTGGATCCGCCGTTGCGGCTCT
* *
274102 AGATCTTTCCCTTATTGTCTTCTGAGGTTCACGGTC
66 AAATCTTTCCCTTCTTGTCTTCTGAGGTTCACGGTC
* * * * *
274138 CCCCGTTGCGACTTAAACCTTTCCCTTTTGTATCTTTGTGGTACTGGATCCGCAGTTG-TGTTCT
1 CGCCGTTGCGACTTAAACCTTTCCCTTTTGTATCTTCGTGGTACTGGATCCGCCGTTGCGGCTCT
* * *
274202 AGATCTTTCCCTT-TATGTC-TCTGAGGTACTA-GGTT
66 AAATCTTTCCCTTCT-TGTCTTCTGAGGTTC-ACGGTC
* * * *
274237 CGTCATTGCGACTTAAACCTTTCCCTTTTGT-T-TTCGTGGGACTGGATCC-CTCGTTGCGACT-
1 CGCCGTTGCGACTTAAACCTTTCCCTTTTGTATCTTCGTGGTACTGGATCCGC-CGTTGCGGCTC
* *
274298 TAAGTCTTTCCCTTCATGTCTTC
65 TAAATCTTTCCCTTCTTGTCTTC
274321 GCGACACTGG
Statistics
Matches: 245, Mismatches: 30, Indels: 18
0.84 0.10 0.06
Matches are distributed among these distances:
96 1 0.00
97 35 0.14
98 4 0.02
99 43 0.18
100 162 0.66
ACGTcount: A:0.14, C:0.27, G:0.20, T:0.40
Consensus pattern (101 bp):
CGCCGTTGCGACTTAAACCTTTCCCTTTTGTATCTTCGTGGTACTGGATCCGCCGTTGCGGCTCT
AAATCTTTCCCTTCTTGTCTTCTGAGGTTCACGGTC
Found at i:274349 original size:49 final size:49
Alignment explanation
Indices: 273938--274562 Score: 289
Period size: 49 Copynumber: 12.7 Consensus size: 49
273928 ATATCGGGCT
* * * * ** * * *
273938 CGCCATTGCAACTTAAACCTTTCCCCTTCAAATCTTCGTGGTACTGGATT
1 CGCCGTTGCGACTTAGATCTTT-CCCTTCATGTCTTCGCGGCACTGGATC
* * * * *
273988 CGCCGTTGCGGCTTAAATCTTTCTCTTCTTGTCTTCTGAGGTTCAC-GG-TC
1 CGCCGTTGCGACTTAGATCTTTCCCTTCATGTCTTC-GCGG--CACTGGATC
* * * * * * *
274038 CGCCGTTGTGACTTAAACCTTTCCCTT-TTGTATCTTTGTGGTACTGGATC
1 CGCCGTTGCGACTTAGATCTTTCCCTTCATG--TCTTCGCGGCACTGGATC
* *
274088 CGCCGTTGCG-GTCTAGATCTTTCCCTT-ATTGTCTTCTGAGGTTCAC-GG-TC
1 CGCCGTTGCGACT-TAGATCTTTCCCTTCA-TGTCTTC-GCGG--CACTGGATC
* * * * * * *
274138 CCCCGTTGCGACTTAAACCTTTCCCTT-TTGTATCTTTGTGGTACTGGATC
1 CGCCGTTGCGACTTAGATCTTTCCCTTCATG--TCTTCGCGGCACTGGATC
* * * * * * *
274188 CGCAGTTGTG-TTCTAGATCTTTCCCTTTATGTC-TCTGAGGTACTAGG-TT
1 CGCCGTTGCGACT-TAGATCTTTCCCTTCATGTCTTC-GCGGCACT-GGATC
* * * * * * * *
274237 CGTCATTGCGACTTAAACCTTTCCCTT-TTGTTTTCGTGGGACTGGATC
1 CGCCGTTGCGACTTAGATCTTTCCCTTCATGTCTTCGCGGCACTGGATC
*
274285 C-CTCGTTGCGACTTA-AGTCTTTCCCTTCATGTCTTCGCGACACTGGATC
1 CGC-CGTTGCGACTTAGA-TCTTTCCCTTCATGTCTTCGCGGCACTGGATC
* * * * * * * *
274334 CACCGTTGC-AGCTTAAATCTTTCCCGTCATATC-TCTGAGGTACAAGG-TT
1 CGCCGTTGCGA-CTTAGATCTTTCCCTTCATGTCTTC-GCGGCAC-TGGATC
* * * * *
274383 CGCCGTTGCGACTTA-AACGTTTCCCTT-TTGTCTTCGTGGTATTGGATC
1 CGCCGTTGCGACTTAGATC-TTTCCCTTCATGTCTTCGCGGCACTGGATC
* * * * *
274431 CGTCATTACGACTTAGATTTTTCCCTTCATGTCTTCGTGGCACTGGATC
1 CGCCGTTGCGACTTAGATCTTTCCCTTCATGTCTTCGCGGCACTGGATC
* *
274480 CGTCGTTGCGACTTAGATCTTTCCTTTCATGTCTTCGCGGCACTGGATC
1 CGCCGTTGCGACTTAGATCTTTCCCTTCATGTCTTCGCGGCACTGGATC
* * * *
274529 CACCGTTGCGGCTTAGATCTTTCACGTCATGTCT
1 CGCCGTTGCGACTTAGATCTTTCCCTTCATGTCT
274563 CTGAGGTACA
Statistics
Matches: 438, Mismatches: 99, Indels: 77
0.71 0.16 0.13
Matches are distributed among these distances:
47 5 0.01
48 70 0.16
49 213 0.49
50 129 0.29
51 17 0.04
52 4 0.01
ACGTcount: A:0.15, C:0.27, G:0.20, T:0.38
Consensus pattern (49 bp):
CGCCGTTGCGACTTAGATCTTTCCCTTCATGTCTTCGCGGCACTGGATC
Found at i:274369 original size:146 final size:146
Alignment explanation
Indices: 274204--274503 Score: 397
Period size: 146 Copynumber: 2.1 Consensus size: 146
274194 TGTGTTCTAG
* * * * * *
274204 ATCTTTCCCTTTATGTCTCTGAGGTACTAGGTTCGTCATTGCGACTTAAACCTTTCCCTTTTGTT
1 ATCTTTCCCGTCATATCTCTGAGGTACAAGGTTCGCCATTGCGACTTAAACCTTTCCCTTTTGTC
* *
274269 TTCGTGGGACTGGATCCCTCGTTGCGACTTA-AGTCTTTCCCTTCATGTCTTCGCGACACTGGAT
66 TTCGTGGGACTGGATCCCTCATTACGACTTAGA-TCTTTCCCTTCATGTCTTCGCGACACTGGAT
274333 CCACCGTTGC-AGCTTAA
130 CCACCGTTGCGA-CTTAA
* *
274350 ATCTTTCCCGTCATATCTCTGAGGTACAAGGTTCGCCGTTGCGACTTAAACGTTTCCCTTTTGTC
1 ATCTTTCCCGTCATATCTCTGAGGTACAAGGTTCGCCATTGCGACTTAAACCTTTCCCTTTTGTC
* * * * * *
274415 TTCGTGGTATTGGATCCGTCATTACGACTTAGATTTTTCCCTTCATGTCTTCGTGGCACTGGATC
66 TTCGTGGGACTGGATCCCTCATTACGACTTAGATCTTTCCCTTCATGTCTTCGCGACACTGGATC
** *
274480 CGTCGTTGCGACTTAG
131 CACCGTTGCGACTTAA
274496 ATCTTTCC
1 ATCTTTCC
274504 TTTCATGTCT
Statistics
Matches: 133, Mismatches: 19, Indels: 4
0.85 0.12 0.03
Matches are distributed among these distances:
146 131 0.98
147 2 0.02
ACGTcount: A:0.16, C:0.27, G:0.20, T:0.38
Consensus pattern (146 bp):
ATCTTTCCCGTCATATCTCTGAGGTACAAGGTTCGCCATTGCGACTTAAACCTTTCCCTTTTGTC
TTCGTGGGACTGGATCCCTCATTACGACTTAGATCTTTCCCTTCATGTCTTCGCGACACTGGATC
CACCGTTGCGACTTAA
Found at i:274488 original size:195 final size:196
Alignment explanation
Indices: 274237--274662 Score: 579
Period size: 195 Copynumber: 2.2 Consensus size: 196
274227 GTACTAGGTT
* * * * *
274237 CGTCATTGCGACTTAAACCTTTCCCTT-TTGTTTTCGTGGGACTGGATCCCTCGTTGCGACTTA-
1 CGTCATTACGACTTAAATCTTTCCCTTCATGTCTTCGTGGCACTGGATCCCTCGTTGCGACTTAG
*
274300 AGTCTTTCCCTTCATGTCTTCGCGACACTGGATCCACCGTTGCAGCTTAAATCTTTCCCGTCATA
66 A-TCTTTCCCTTCATGTCTTCGCGACACTGGATCCACCGTTGCAGCTTAAATCTTTCACGTCATA
* ** * * *
274365 TCTCTGAGGTACAAGGTTCGCCGTTGCGACTTAAACGTTTCCCTTT-TGTCTTCGTGGTATTGGA
130 TCTCTGAGGTACAAGGTTCACCGTTGCGACTTAAACACTTCCCTTTCTATCTTCGCGGTACTGGA
274429 TC
195 TC
* * *
274431 CGTCATTACGACTTAGATTTTTCCCTTCATGTCTTCGTGGCACTGGATCCGTCGTTGCGACTTAG
1 CGTCATTACGACTTAAATCTTTCCCTTCATGTCTTCGTGGCACTGGATCCCTCGTTGCGACTTAG
* * * * *
274496 ATCTTTCCTTTCATGTCTTCGCGGCACTGGATCCACCGTTGCGGCTTAGATCTTTCACGTCATGT
66 ATCTTTCCCTTCATGTCTTCGCGACACTGGATCCACCGTTGCAGCTTAAATCTTTCACGTCATAT
* *
274561 CTCTGAGGTACAATGTTCACCGTTGCGACTTAAACACTTCCCTTTCGTATCTTTGCGGTACTGGA
131 CTCTGAGGTACAAGGTTCACCGTTGCGACTTAAACACTTCCCTTTC-TATCTTCGCGGTACTGGA
274626 TC
195 TC
* * *
274628 CGTCATTATGGTCTTAAATCTTTCCCGTCATGTCT
1 CGTCATTA-CGACTTAAATCTTTCCCTTCATGTCT
274663 CTGAGGTATA
Statistics
Matches: 200, Mismatches: 27, Indels: 6
0.86 0.12 0.03
Matches are distributed among these distances:
194 23 0.12
195 131 0.65
196 1 0.00
197 24 0.12
198 21 0.10
ACGTcount: A:0.16, C:0.27, G:0.20, T:0.37
Consensus pattern (196 bp):
CGTCATTACGACTTAAATCTTTCCCTTCATGTCTTCGTGGCACTGGATCCCTCGTTGCGACTTAG
ATCTTTCCCTTCATGTCTTCGCGACACTGGATCCACCGTTGCAGCTTAAATCTTTCACGTCATAT
CTCTGAGGTACAAGGTTCACCGTTGCGACTTAAACACTTCCCTTTCTATCTTCGCGGTACTGGAT
C
Found at i:274660 original size:100 final size:100
Alignment explanation
Indices: 274345--274760 Score: 405
Period size: 100 Copynumber: 4.2 Consensus size: 100
274335 ACCGTTGCAG
* * **
274345 CTTAAATCTTTCCCGTCATATCTCTGAGGTACAAGGTTCGCCGTTGCGACTTAAACGTTTCCCTT
1 CTTAGATCTTTCCCGTCATGTCTCTGAGGTACAAGGTTCGCCGTTGCGACTTAAACACTTCCCTT
* * * * *
274410 T--TGTCTTCGTGGTATTGGATCCGTCATTAC-GA
66 TCGTATCTTCGCGGTACTGGATCCGCCATTACGGT
* * * * * * * * * *
274442 CTTAGATTTTTCCCTTCATGTCT-TCGTGGCAC-TGGATCCGTCGTTGCGACTTAGA-TCTTTCC
1 CTTAGATCTTTCCCGTCATGTCTCT-GAGGTACAAGG-TTCGCCGTTGCGACTTAAACACTTCCC
* * * * * *
274504 TTTCATGTCTTCGCGGCACTGGATCCACCGTTGCGG-
64 TTTCGTATCTTCGCGGTACTGGATCCGCCATTACGGT
* * *
274540 CTTAGATCTTTCACGTCATGTCTCTGAGGTACAATGTTCACCGTTGCGACTTAAACACTTCCCTT
1 CTTAGATCTTTCCCGTCATGTCTCTGAGGTACAAGGTTCGCCGTTGCGACTTAAACACTTCCCTT
* * *
274605 TCGTATCTTTGCGGTACTGGATCCGTCATTATGGT
66 TCGTATCTTCGCGGTACTGGATCCGCCATTACGGT
* * * *
274640 CTTAAATCTTTCCCGTCATGTCTCTGAGGTATAAGGTTCGCTGTTGCGACTTAAACCCTTCCCTT
1 CTTAGATCTTTCCCGTCATGTCTCTGAGGTACAAGGTTCGCCGTTGCGACTTAAACACTTCCCTT
* * * * *
274705 TTGTATCTTTGCGATACTGGATCCGCCGTTGCGGT
66 TCGTATCTTCGCGGTACTGGATCCGCCATTACGGT
274740 CTTAGATCTTTCCCGTCATGT
1 CTTAGATCTTTCCCGTCATGT
274761 TTCATGGTGC
Statistics
Matches: 254, Mismatches: 56, Indels: 15
0.78 0.17 0.05
Matches are distributed among these distances:
96 10 0.04
97 40 0.16
98 62 0.24
99 35 0.14
100 107 0.42
ACGTcount: A:0.16, C:0.26, G:0.20, T:0.37
Consensus pattern (100 bp):
CTTAGATCTTTCCCGTCATGTCTCTGAGGTACAAGGTTCGCCGTTGCGACTTAAACACTTCCCTT
TCGTATCTTCGCGGTACTGGATCCGCCATTACGGT
Found at i:281663 original size:59 final size:59
Alignment explanation
Indices: 281515--281734 Score: 187
Period size: 59 Copynumber: 3.7 Consensus size: 59
281505 ATTCGGGGTT
* * * * ** * * *
281515 AAAAATGGAATTTTTAGACA-CTCGGGGGTAAAACGGTAATTTTTAGAA-AATCGAGATC
1 AAAAATGGAATTTTTGGA-AGTTCGGGGGTAAAATGGTAATTTTTGGAAGTTTCAAGGTA
** * * **
281573 AAAAATCAAATTTTTGGACA-TTCGGGGGTAAAAGGGTAATTTTT-GAGATTTTTTAGGTA
1 AAAAATGGAATTTTTGGA-AGTTCGGGGGTAAAATGGTAATTTTTGGA-AGTTTCAAGGTA
* * * *
281632 AAAAATGGAATTTTTGTAAGTTTGGGGGTAAAATGGTAATTTTTGGAAGTTTCAAGTTC
1 AAAAATGGAATTTTTGGAAGTTCGGGGGTAAAATGGTAATTTTTGGAAGTTTCAAGGTA
* * *
281691 AAAATTGGGATTTTTGGAAGTTCGAGGGTAAAATGGTAATTTTT
1 AAAAATGGAATTTTTGGAAGTTCGGGGGTAAAATGGTAATTTTT
281735 AAAAATTTTG
Statistics
Matches: 132, Mismatches: 26, Indels: 7
0.80 0.16 0.04
Matches are distributed among these distances:
57 2 0.02
58 41 0.31
59 87 0.66
60 2 0.02
ACGTcount: A:0.35, C:0.05, G:0.25, T:0.35
Consensus pattern (59 bp):
AAAAATGGAATTTTTGGAAGTTCGGGGGTAAAATGGTAATTTTTGGAAGTTTCAAGGTA
Found at i:281672 original size:29 final size:28
Alignment explanation
Indices: 281633--281781 Score: 129
Period size: 29 Copynumber: 5.1 Consensus size: 28
281623 TTTTAGGTAA
* *
281633 AAAATGGAATTTTTGTAAGTTTGGGGGT
1 AAAATGGAATTTTTGGAAGTTTGAGGGT
* * *
281661 AAAATGGTAATTTTTGGAAGTTTCAAGTT
1 AAAATGG-AATTTTTGGAAGTTTGAGGGT
* *
281690 CAAAATTGGGATTTTTGGAAGTTCGAGGGT
1 -AAAA-TGGAATTTTTGGAAGTTTGAGGGT
** *
281720 AAAATGGTAATTTTTAAAAATTTTG-GGGT
1 AAAATGG-AATTTTT-GGAAGTTTGAGGGT
* *
281749 CAAATCGAGATTTTTGGAAGTTTGAGGGT
1 AAAATGGA-ATTTTTGGAAGTTTGAGGGT
281778 AAAA
1 AAAA
281782 ATTGTAATTT
Statistics
Matches: 93, Mismatches: 21, Indels: 13
0.73 0.17 0.10
Matches are distributed among these distances:
28 17 0.18
29 48 0.52
30 25 0.27
31 3 0.03
ACGTcount: A:0.33, C:0.03, G:0.27, T:0.37
Consensus pattern (28 bp):
AAAATGGAATTTTTGGAAGTTTGAGGGT
Found at i:281792 original size:29 final size:29
Alignment explanation
Indices: 281640--281801 Score: 121
Period size: 29 Copynumber: 5.5 Consensus size: 29
281630 TAAAAAATGG
* * *
281640 AATTTTTGTAAGTTTGGGGGTAAAATGGT
1 AATTTTTGGAAGTTTGAGGGTAAAATTGT
* * * *
281669 AATTTTTGGAAGTTTCAAGTTCAAAATTGG
1 AATTTTTGGAAGTTTGAGGGT-AAAATTGT
* * *
281699 GATTTTTGGAAGTTCGAGGGTAAAATGGT
1 AATTTTTGGAAGTTTGAGGGTAAAATTGT
** * * *
281728 AATTTTTAAAAATTTTG-GGGTCAAATCG-
1 AATTTTT-GGAAGTTTGAGGGTAAAATTGT
281756 AGATTTTTGGAAGTTTGAGGGTAAAAATTGT
1 A-ATTTTTGGAAGTTTGAGGGT-AAAATTGT
* *
281787 AATTTTCGAAAGTTT
1 AATTTTTGGAAGTTT
281802 TGGGATTAAA
Statistics
Matches: 99, Mismatches: 28, Indels: 11
0.72 0.20 0.08
Matches are distributed among these distances:
28 7 0.07
29 47 0.47
30 44 0.44
31 1 0.01
ACGTcount: A:0.31, C:0.04, G:0.25, T:0.40
Consensus pattern (29 bp):
AATTTTTGGAAGTTTGAGGGTAAAATTGT
Found at i:281803 original size:59 final size:59
Alignment explanation
Indices: 281598--281805 Score: 195
Period size: 59 Copynumber: 3.5 Consensus size: 59
281588 GGACATTCGG
* * * ** * * * *
281598 GGGTAAAAGGGTAATTTTTGAGATTTTTTAGGTAAAAAATGGA-ATTTTTGTAAGTTTGG
1 GGGTAAAATGGTAATTTTTGAAAGTTTTGGGGT-CAAAATCGAGATTTTTGGAAGTTTGA
* *** * * * *
281657 GGGTAAAATGGTAATTTTTGGAAGTTTCAAGTTCAAAATTGGGATTTTTGGAAGTTCGA
1 GGGTAAAATGGTAATTTTTGAAAGTTTTGGGGTCAAAATCGAGATTTTTGGAAGTTTGA
* *
281716 GGGTAAAATGGTAATTTTTAAAAATTTTGGGGTC-AAATCGAGATTTTTGGAAGTTTGA
1 GGGTAAAATGGTAATTTTTGAAAGTTTTGGGGTCAAAATCGAGATTTTTGGAAGTTTGA
* *
281774 GGGTAAAAATTGTAATTTTCGAAAGTTTTGGG
1 GGGT-AAAATGGTAATTTTTGAAAGTTTTGGG
281806 ATTAAAATAT
Statistics
Matches: 120, Mismatches: 27, Indels: 4
0.79 0.18 0.03
Matches are distributed among these distances:
58 31 0.26
59 89 0.74
ACGTcount: A:0.32, C:0.03, G:0.27, T:0.38
Consensus pattern (59 bp):
GGGTAAAATGGTAATTTTTGAAAGTTTTGGGGTCAAAATCGAGATTTTTGGAAGTTTGA
Found at i:281821 original size:59 final size:58
Alignment explanation
Indices: 281699--281835 Score: 143
Period size: 59 Copynumber: 2.3 Consensus size: 58
281689 TCAAAATTGG
* * * *
281699 GATTTTTGGAAGTTCGAGGGTAAAATGGTAATTTTTAAAAATTTTGGGGTCAAATCGA
1 GATTTTTGGAAGTTTGAGGGTAAAATGGTAATTTTCAAAAATTTTGGGGTAAAATAGA
* * * * *
281757 GATTTTTGGAAGTTTGAGGGTAAAAATTGTAATTTTCGAAAGTTTTGGGATTAAAATATA
1 GATTTTTGGAAGTTTGAGGGT-AAAATGGTAATTTTCAAAAATTTTGGG-GTAAAATAGA
*
281817 -ATTTTTAGACAGTTT-AGGG
1 GATTTTTGGA-AGTTTGAGGG
281836 ACCTCCAGGA
Statistics
Matches: 66, Mismatches: 10, Indels: 5
0.81 0.12 0.06
Matches are distributed among these distances:
58 20 0.30
59 35 0.53
60 11 0.17
ACGTcount: A:0.33, C:0.04, G:0.25, T:0.39
Consensus pattern (58 bp):
GATTTTTGGAAGTTTGAGGGTAAAATGGTAATTTTCAAAAATTTTGGGGTAAAATAGA
Found at i:282073 original size:6 final size:6
Alignment explanation
Indices: 282064--282159 Score: 74
Period size: 6 Copynumber: 16.7 Consensus size: 6
282054 TATTAATATT
* * *
282064 AATTTA AATTTA AATTTA AACTTA AATTTA AA-ATA AATTTA AATTTT
1 AATTTA AATTTA AATTTA AATTTA AATTTA AATTTA AATTTA AATTTA
* * ** * * *
282111 AA-GTA AATTTA AACTTA AA-AAA AAATTA ATTTTA AA-ATA AATTTA
1 AATTTA AATTTA AATTTA AATTTA AATTTA AATTTA AATTTA AATTTA
282156 AATT
1 AATT
282160 CTGTTGGGCC
Statistics
Matches: 68, Mismatches: 18, Indels: 8
0.72 0.19 0.09
Matches are distributed among these distances:
5 14 0.21
6 54 0.79
ACGTcount: A:0.55, C:0.02, G:0.01, T:0.42
Consensus pattern (6 bp):
AATTTA
Found at i:282082 original size:17 final size:17
Alignment explanation
Indices: 282064--282159 Score: 111
Period size: 17 Copynumber: 5.6 Consensus size: 17
282054 TATTAATATT
*
282064 AATTTAAATTTAAATTTA
1 AATTTAAATTTAAA-ATA
*
282082 AACTTAAATTTAAAATA
1 AATTTAAATTTAAAATA
* *
282099 AATTTAAATTTTAAGTA
1 AATTTAAATTTAAAATA
* *
282116 AATTTAAACTTAAAAAA
1 AATTTAAATTTAAAATA
* *
282133 AAATTAATTTTAAAATA
1 AATTTAAATTTAAAATA
282150 AATTTAAATT
1 AATTTAAATT
282160 CTGTTGGGCC
Statistics
Matches: 63, Mismatches: 15, Indels: 1
0.80 0.19 0.01
Matches are distributed among these distances:
17 50 0.79
18 13 0.21
ACGTcount: A:0.55, C:0.02, G:0.01, T:0.42
Consensus pattern (17 bp):
AATTTAAATTTAAAATA
Found at i:282088 original size:23 final size:24
Alignment explanation
Indices: 282062--282129 Score: 70
Period size: 23 Copynumber: 2.9 Consensus size: 24
282052 GATATTAATA
282062 TTAATTTAAATTTAAATTTAAA-C
1 TTAATTTAAATTTAAATTTAAATC
* *
282085 TTAAATTTAAA-ATAAATTTAAATT
1 TT-AATTTAAATTTAAATTTAAATC
* *
282109 TTAA-GTAAATTTAAACTTAAA
1 TTAATTTAAATTTAAATTTAAA
282130 AAAAAATTAA
Statistics
Matches: 37, Mismatches: 5, Indels: 6
0.77 0.10 0.12
Matches are distributed among these distances:
22 4 0.11
23 23 0.62
24 10 0.27
ACGTcount: A:0.51, C:0.03, G:0.01, T:0.44
Consensus pattern (24 bp):
TTAATTTAAATTTAAATTTAAATC
Found at i:286768 original size:18 final size:17
Alignment explanation
Indices: 286738--286794 Score: 71
Period size: 18 Copynumber: 3.2 Consensus size: 17
286728 TATAAAAGAA
286738 TAAATTTATTTTAGTTT
1 TAAATTTATTTTAGTTT
*
286755 TTAATTTAATTTTAGTTCT
1 TAAATTT-ATTTTAGTT-T
286774 TAAATTTATTTT-GTTT
1 TAAATTTATTTTAGTTT
286790 ATAAA
1 -TAAA
286795 ATTACCTCAA
Statistics
Matches: 35, Mismatches: 2, Indels: 6
0.81 0.05 0.14
Matches are distributed among these distances:
16 1 0.03
17 13 0.37
18 14 0.40
19 7 0.20
ACGTcount: A:0.32, C:0.02, G:0.05, T:0.61
Consensus pattern (17 bp):
TAAATTTATTTTAGTTT
Found at i:292531 original size:21 final size:22
Alignment explanation
Indices: 292507--292547 Score: 57
Period size: 21 Copynumber: 1.9 Consensus size: 22
292497 ATGGAGTTCA
* *
292507 CATTTATTGTTTAAC-AAATAT
1 CATTTACTATTTAACGAAATAT
292528 CATTTACTATTTAACGAAAT
1 CATTTACTATTTAACGAAAT
292548 TAAAATTTTT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 13 0.76
22 4 0.24
ACGTcount: A:0.39, C:0.12, G:0.05, T:0.44
Consensus pattern (22 bp):
CATTTACTATTTAACGAAATAT
Found at i:295348 original size:2 final size:2
Alignment explanation
Indices: 295341--295370 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
295331 TTGAACCTAT
295341 CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA
1 CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA
295371 TATATATATA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.50, G:0.00, T:0.00
Consensus pattern (2 bp):
CA
Found at i:295746 original size:47 final size:47
Alignment explanation
Indices: 295678--295769 Score: 157
Period size: 47 Copynumber: 2.0 Consensus size: 47
295668 GACATACATG
* * *
295678 AAAAATTGATCTATTATGAGTTATCTTATTTGATTGTATATGTCACA
1 AAAAATTGATCCATTATGAGTTATCTTAGTTAATTGTATATGTCACA
295725 AAAAATTGATCCATTATGAGTTATCTTAGTTAATTGTATATGTCA
1 AAAAATTGATCCATTATGAGTTATCTTAGTTAATTGTATATGTCA
295770 TAAGTAGAGA
Statistics
Matches: 42, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
47 42 1.00
ACGTcount: A:0.35, C:0.09, G:0.13, T:0.43
Consensus pattern (47 bp):
AAAAATTGATCCATTATGAGTTATCTTAGTTAATTGTATATGTCACA
Found at i:295958 original size:12 final size:12
Alignment explanation
Indices: 295941--295975 Score: 56
Period size: 11 Copynumber: 3.1 Consensus size: 12
295931 CTGCTCGCCC
295941 ATATTAATTTTT
1 ATATTAATTTTT
295953 ATATT-ATTTTT
1 ATATTAATTTTT
295964 ATA-TAATTTTT
1 ATATTAATTTTT
295975 A
1 A
295976 AATATATATA
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
10 1 0.05
11 16 0.73
12 5 0.23
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (12 bp):
ATATTAATTTTT
Found at i:296124 original size:30 final size:30
Alignment explanation
Indices: 296088--296152 Score: 121
Period size: 30 Copynumber: 2.2 Consensus size: 30
296078 CAACTTAACA
*
296088 AACAAATGTCTCTAAAATAATAACAAAATT
1 AACAAATGACTCTAAAATAATAACAAAATT
296118 AACAAATGACTCTAAAATAATAACAAAATT
1 AACAAATGACTCTAAAATAATAACAAAATT
296148 AACAA
1 AACAA
296153 TAAGATAAGT
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 34 1.00
ACGTcount: A:0.60, C:0.14, G:0.03, T:0.23
Consensus pattern (30 bp):
AACAAATGACTCTAAAATAATAACAAAATT
Done.