genome.fa.s15259.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01015259.1 Kokia drynarioides strain JFW-HI SEQ_130304, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  297397

Tables:   1   

This is table  1  of  1  ( 97 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
798--922	6	21.2	6	71	9	96	50	0	4	44	1.29
820--922	17	5.9	17	79	5	91	52	0	3	42	1.26
844--922	23	3.7	23	74	20	89	54	0	5	40	1.22
798--922	41	3.4	35	70	20	92	50	0	4	44	1.29
1040--1080	21	1.9	22	85	5	57	56	0	2	41	1.13
1520--1600	6	13.5	6	70	14	60	39	3	1	55	1.25
1520--1599	17	4.4	18	84	12	110	38	3	1	56	1.25
1520--1599	37	2.2	35	89	8	117	38	3	1	56	1.25
1862--1930	25	2.8	25	95	4	122	20	37	15	26	1.93
11964--12004	19	2.2	19	86	0	55	46	2	0	51	1.14
15117--15190	19	3.7	20	73	8	69	47	2	2	47	1.30
15141--15190	20	2.4	22	83	6	68	44	2	2	52	1.24
22697--22744	16	2.9	16	87	6	60	29	0	2	68	1.01
28519--28554	19	1.9	18	88	5	54	25	5	0	69	1.10
29670--29816	75	1.9	74	81	8	170	25	23	15	35	1.94
29693--29869	76	2.3	75	81	4	196	25	22	16	35	1.95
29519--29786	126	2.2	122	81	7	290	24	24	14	37	1.92
29769--30427	123	5.4	123	89	1	946	23	23	16	37	1.94
33058--33100	16	2.6	17	85	7	63	58	2	0	39	1.11
33192--33255	32	2.0	32	84	0	83	43	6	3	46	1.44
35422--35590	83	2.0	83	98	0	329	42	7	30	20	1.79
37628--37666	15	2.6	14	84	11	51	38	0	0	61	0.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41119--41261	56	2.6	56	85	2	171	34	5	13	46	1.66
47447--47501	21	2.6	21	85	0	65	30	23	12	32	1.92
48152--48330	61	3.0	60	84	4	227	30	22	12	34	1.91
48278--48398	53	2.3	53	83	8	142	30	23	14	31	1.94
50296--50357	21	3.0	21	92	4	108	33	11	19	35	1.87
55923--56019	25	3.8	25	87	5	115	38	17	30	13	1.88
55923--56031	25	4.5	24	85	7	107	40	18	29	11	1.86
56005--56073	22	3.1	22	95	2	120	39	30	23	7	1.82
61107--61140	15	2.3	15	100	0	68	32	14	23	29	1.94
71635--71672	16	2.4	16	90	0	58	15	21	15	47	1.82
78260--78400	68	2.1	69	97	1	266	55	22	9	12	1.66
79939--79977	11	3.5	11	92	3	60	30	0	2	66	1.05
80486--80535	19	2.6	19	81	15	59	80	0	14	6	0.90
80496--80531	15	2.5	15	90	4	56	86	0	8	5	0.72
84452--84513	32	1.9	32	96	0	115	29	9	22	38	1.86
85334--85463	23	5.7	22	81	7	111	38	25	23	12	1.90
85303--85475	23	7.5	21	77	13	98	39	23	24	12	1.89
85538--85585	24	1.9	26	84	16	66	31	22	0	45	1.53
86389--86518	23	5.7	22	81	7	111	38	25	23	12	1.90
86358--86530	23	7.5	21	77	13	98	39	23	24	12	1.89
86593--86640	24	1.9	26	84	16	66	31	22	0	45	1.53
91872--91952	23	3.4	23	86	10	94	9	23	20	45	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
91934--91976	21	2.0	22	90	4	70	6	13	20	58	1.59
96557--96600	19	2.3	19	84	7	54	75	6	0	18	1.02
96904--96937	3	11.3	3	100	0	68	35	0	64	0	0.94
106950--106999	22	2.3	22	82	3	66	50	12	0	38	1.40
117012--117339	163	2.0	163	98	0	638	25	13	24	36	1.92
128585--128609	2	12.5	2	100	0	50	0	52	0	48	1.00
134098--134147	21	2.4	20	80	9	55	64	4	4	28	1.30
135953--136101	74	2.0	74	100	0	298	40	12	9	38	1.75
149517--149701	47	3.9	47	94	1	300	15	17	24	42	1.88
158158--158216	6	9.8	6	84	0	64	50	1	32	15	1.54
164616--164690	37	2.0	37	100	0	150	21	24	18	36	1.95
173025--173059	3	11.7	3	100	0	70	0	31	0	68	0.90
180647--180684	10	3.5	11	85	10	51	55	7	0	36	1.29
182961--182993	15	2.1	17	88	11	52	57	0	0	42	0.98
185372--185421	21	2.3	22	79	6	57	52	4	2	42	1.31
194701--194740	21	2.0	19	85	9	53	50	10	2	37	1.50
196138--196184	24	2.0	23	83	8	58	46	4	6	42	1.48
198642--198698	29	1.9	30	85	3	80	49	15	1	33	1.55
202573--202614	22	1.9	22	90	0	66	57	0	0	42	0.99
204430--204457	2	14.0	2	100	0	56	50	0	0	50	1.00
207700--208124	59	7.2	59	86	5	551	31	4	30	33	1.79
207685--208120	176	2.5	175	85	7	569	31	4	31	32	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
207700--208127	29	14.6	28	75	14	316	30	4	31	32	1.79
209956--210035	18	4.6	17	83	6	106	55	2	0	42	1.13
209953--210002	6	8.7	6	78	8	59	54	2	0	44	1.11
209956--210035	17	4.6	18	87	6	94	55	2	0	42	1.13
211937--211978	16	2.6	16	82	14	50	45	4	0	50	1.23
212365--212402	20	1.9	20	84	10	51	28	0	13	57	1.36
222050--222196	74	2.0	74	100	0	294	29	4	23	42	1.72
222071--222188	39	3.1	39	66	22	115	31	4	21	43	1.72
229393--229434	2	21.0	2	100	0	84	50	0	0	50	1.00
232320--232362	18	2.4	18	80	7	52	51	0	2	46	1.13
241472--241553	37	2.3	36	83	10	105	20	17	2	59	1.48
244179--244203	11	2.3	11	100	0	50	56	0	0	44	0.99
247489--247513	2	12.5	2	100	0	50	52	0	0	48	1.00
248879--248907	14	2.1	14	93	6	51	41	6	0	51	1.28
251341--251398	31	1.9	31	85	3	82	36	15	20	27	1.93
253648--253704	20	2.9	19	71	5	60	17	26	26	29	1.97
266793--266819	3	9.0	3	100	0	54	33	0	0	66	0.92
267436--267534	38	2.6	38	81	9	96	53	6	3	37	1.41
267447--267534	38	2.3	38	88	4	122	53	5	2	38	1.37
270840--271308	156	3.0	156	87	0	643	34	15	17	32	1.91
274875--274899	12	2.1	12	100	0	50	60	0	16	24	1.36
283823--283861	21	1.9	20	89	5	60	56	0	5	38	1.22
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
284206--284239	15	2.3	15	89	0	50	64	5	0	29	1.17
287329--288015	208	3.4	207	87	5	906	38	26	6	28	1.80
287461--288016	104	5.3	104	87	4	759	38	26	6	28	1.80
292893--292917	6	4.2	6	100	0	50	16	0	0	84	0.63
293251--293314	4	16.0	4	81	12	69	67	0	32	0	0.91
293250--293314	20	3.3	19	82	8	76	66	0	33	0	0.92
293250--293314	28	2.3	29	78	7	89	66	0	33	0	0.92
296398--296441	21	2.1	21	91	0	70	27	15	36	20	1.93
296448--296572	45	2.8	45	83	0	151	18	22	27	32	1.97

Tables:   1

The End!