Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NTFQ01015261.1 Kokia drynarioides strain JFW-HI SEQ_130306, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 318933
ACGTcount: A:0.33, C:0.17, G:0.16, T:0.34
Warning! 374 characters in sequence are not A, C, G, or T
File 1 of 2
Found at i:472 original size:59 final size:57
Alignment explanation
Indices: 373--493 Score: 163
Period size: 59 Copynumber: 2.1 Consensus size: 57
363 AGACTGTCCG
* *
373 AAAATTACCATTTTACCCCCGAACTTCCAAAAATCTCATTTTTAACCCCGAAACTTCCA
1 AAAATTACCATTTCACCCCCGAACTTCCAAAAATCTCA-TTTT-ACCCCGAAACTTCAA
* * *
432 AAAATTACCATTTCACCCTCGAACTTCCAAAATTAC-CATTTTACCCCTAAACTTCAA
1 AAAATTACCATTTCACCCCCGAACTTCCAAAAAT-CTCATTTTACCCCGAAACTTCAA
489 AAAAT
1 AAAAT
494 CCTATTTTTG
Statistics
Matches: 56, Mismatches: 5, Indels: 4
0.86 0.08 0.06
Matches are distributed among these distances:
57 18 0.32
58 4 0.07
59 33 0.59
60 1 0.02
ACGTcount: A:0.38, C:0.31, G:0.02, T:0.29
Consensus pattern (57 bp):
AAAATTACCATTTCACCCCCGAACTTCCAAAAATCTCATTTTACCCCGAAACTTCAA
Found at i:526 original size:87 final size:87
Alignment explanation
Indices: 373--707 Score: 299
Period size: 87 Copynumber: 3.8 Consensus size: 87
363 AGACTGTCCG
* *
373 AAAATTACCATTTTACCCCCGAACTTCCAAAAATCTCATTTTTAACCCCGAAACTTCCAAAAATT
1 AAAATTACCATTTTACCCCCAAACTTCAAAAAATCTCATTTTTAACCCCGAAACTTCCAAAAATT
*
438 ACCATTTCACCCTCGAACTTCC
66 ACCATTTCACCCCCGAACTTCC
* ** * *
460 AAAATTACCATTTTACCCCTAAACTTCAAAAAATC-CTATTTTTGGCCCCGAAACTTCTAAACAT
1 AAAATTACCATTTTACCCCCAAACTTCAAAAAATCTC-ATTTTTAACCCCGAAACTTCCAAAAAT
*
524 TACCATTTCACCCCCGAACTTTC
65 TACCATTTCACCCCCGAACTTCC
* ** * *
547 AAAAAT-CTCATTTTTGACCCTAAAACTTCTAAAAAT-TACCA-TTTT-ACCCTCG-AACTTCTA
1 AAAATTAC-CA-TTTT-ACCCCCAAACTTCAAAAAATCT--CATTTTTAACCC-CGAAACTTCCA
* **
607 AAAA-T-CTCATTTTTGACCCCAAAACTTCC
60 AAAATTAC-CA--TTTCACCCCCGAACTTCC
* * * * * ** *
636 AAAATTACCATTTTACCCTCGAACTTCCAAAAATCCCATTTTTAACCCTGAATTTTCCCAAAATT
1 AAAATTACCATTTTACCCCCAAACTTCAAAAAATCTCATTTTTAACCCCGAAACTTCCAAAAATT
701 ACCATTT
66 ACCATTT
708 TGCCCCGTGC
Statistics
Matches: 201, Mismatches: 29, Indels: 36
0.76 0.11 0.14
Matches are distributed among these distances:
86 5 0.02
87 111 0.55
88 34 0.17
89 47 0.23
90 3 0.01
91 1 0.00
ACGTcount: A:0.35, C:0.30, G:0.04, T:0.32
Consensus pattern (87 bp):
AAAATTACCATTTTACCCCCAAACTTCAAAAAATCTCATTTTTAACCCCGAAACTTCCAAAAATT
ACCATTTCACCCCCGAACTTCC
Found at i:540 original size:117 final size:114
Alignment explanation
Indices: 418--713 Score: 312
Period size: 117 Copynumber: 2.5 Consensus size: 114
408 TCATTTTTAA
*
418 CCCCGAAACTTCCAAAAATTACCA-TTTCACCCTCGAACTTCCAAAATTACCATTTTACCCCT-A
1 CCCCG-AACTTCCAAAAA-T-CCATTTTAACCCT-GAACTTCCAAAATTACCATTTTACCCCTCA
* * *
481 AACTTCAAAAAATC-CTATTTTTGGCCCCGAAACTTCTAAACATTACCATTTCAC
62 AACTTCAAAAAATCTC-ATTTTTGACCCCAAAACTTCCAAA-ATTACCATTTCAC
* * * * *
535 CCCCGAACTTTCAAAAATCTCATTTTTGACCCTAAAACTTCTAAAAATTACCATTTTA-CCCTCG
1 CCCCGAACTTCCAAAAATC-CA-TTTTAACCCT-GAACTTC-CAAAATTACCATTTTACCCCTCA
* *
599 AACTTCTAAAAATCTCATTTTTGACCCCAAAACTTCCAAAATTACCATTTTAC
62 AACTTCAAAAAATCTCATTTTTGACCCCAAAACTTCCAAAATTACCATTTCAC
* * *
652 CCTCGAACTTCCAAAAATCCCATTTTTAACCCTGAATTTTCCCAAAATTACCATTTTGCCCC
1 CCCCGAACTTCCAAAAAT-CCA-TTTTAACCCTGAA-CTT-CCAAAATTACCATTTTACCCC
714 GTGCATCCGA
Statistics
Matches: 151, Mismatches: 18, Indels: 19
0.80 0.10 0.10
Matches are distributed among these distances:
114 1 0.01
115 3 0.02
116 13 0.09
117 79 0.52
118 54 0.36
119 1 0.01
ACGTcount: A:0.33, C:0.31, G:0.04, T:0.31
Consensus pattern (114 bp):
CCCCGAACTTCCAAAAATCCATTTTAACCCTGAACTTCCAAAATTACCATTTTACCCCTCAAACT
TCAAAAAATCTCATTTTTGACCCCAAAACTTCCAAAATTACCATTTCAC
Found at i:668 original size:58 final size:58
Alignment explanation
Indices: 453--708 Score: 300
Period size: 59 Copynumber: 4.4 Consensus size: 58
443 TTCACCCTCG
* * * *
453 AACTTCCAAAATTACCATTTTACCC-CTAAACTTCAAAAAATC-CTATTTTTGGCCCCGA
1 AACTTCCAAAATTACCATTTTACCCTC-GAACTTCCAAAAATCTC-ATTTTTGACCCCAA
* * * * *
511 AACTTCTAAACATTACCATTTCACCCCCGAACTTTCAAAAATCTCATTTTTGACCCTAA
1 AACTTCCAAA-ATTACCATTTTACCCTCGAACTTCCAAAAATCTCATTTTTGACCCCAA
* *
570 AACTTCTAAAAATTACCATTTTACCCTCGAACTTCTAAAAATCTCATTTTTGACCCCAA
1 AACTTC-CAAAATTACCATTTTACCCTCGAACTTCCAAAAATCTCATTTTTGACCCCAA
* * **
629 AACTTCCAAAATTACCATTTTACCCTCGAACTTCCAAAAATCCCATTTTTAACCCTGA
1 AACTTCCAAAATTACCATTTTACCCTCGAACTTCCAAAAATCTCATTTTTGACCCCAA
**
687 ATTTTCCCAAAATTACCATTTT
1 AACTT-CCAAAATTACCATTTT
709 GCCCCGTGCA
Statistics
Matches: 171, Mismatches: 22, Indels: 9
0.85 0.11 0.04
Matches are distributed among these distances:
58 58 0.34
59 108 0.63
60 5 0.03
ACGTcount: A:0.34, C:0.29, G:0.04, T:0.33
Consensus pattern (58 bp):
AACTTCCAAAATTACCATTTTACCCTCGAACTTCCAAAAATCTCATTTTTGACCCCAA
Found at i:678 original size:29 final size:28
Alignment explanation
Indices: 373--708 Score: 213
Period size: 30 Copynumber: 11.5 Consensus size: 28
363 AGACTGTCCG
* *
373 AAAATTACCATTTTACCCCCGAACTTCC
1 AAAAATACCATTTTACCCTCGAACTTCC
401 AAAAAT-CTCATTTTTAACCC-CGAAACTTCC
1 AAAAATAC-CA-TTTT-ACCCTCG-AACTTCC
*
431 AAAAATTACCATTTCACCCTCGAACTTCC
1 AAAAA-TACCATTTTACCCTCGAACTTCC
* * *
460 AAAATTACCATTTTACCC-CTAAACTTCA
1 AAAAATACCATTTTACCCTC-GAACTTCC
* *
488 AAAAAT-CCTATTTTTGGCCC-CGAAACTTCT
1 AAAAATACC-A-TTTT-ACCCTCG-AACTTCC
* * * *
518 AAACATTACCATTTCACCCCCGAACTTTC
1 AAA-AATACCATTTTACCCTCGAACTTCC
** *
547 AAAAAT-CTCATTTTTGACCCTAAAACTTCT
1 AAAAATAC-CA-TTTT-ACCCTCGAACTTCC
*
577 AAAAATTACCATTTTACCCTCGAACTTCT
1 AAAAA-TACCATTTTACCCTCGAACTTCC
*
606 AAAAAT-CTCATTTTTGACCC-CAAAACTTCC
1 AAAAATAC-CA-TTTT-ACCCTC-GAACTTCC
*
636 AAAATTACCATTTTACCCTCGAACTTCC
1 AAAAATACCATTTTACCCTCGAACTTCC
* *
664 AAAAATCCCATTTTTAACCCT-GAATTTTCCC
1 AAAAATACCA-TTTT-ACCCTCGAA-CTT-CC
*
695 AAAATTACCATTTT
1 AAAAATACCATTTT
709 GCCCCGTGCA
Statistics
Matches: 245, Mismatches: 33, Indels: 58
0.73 0.10 0.17
Matches are distributed among these distances:
27 6 0.02
28 57 0.23
29 73 0.30
30 85 0.35
31 20 0.08
32 4 0.02
ACGTcount: A:0.35, C:0.30, G:0.04, T:0.32
Consensus pattern (28 bp):
AAAAATACCATTTTACCCTCGAACTTCC
Found at i:7873 original size:170 final size:169
Alignment explanation
Indices: 7586--7900 Score: 497
Period size: 170 Copynumber: 1.9 Consensus size: 169
7576 TAGAAAGCTG
* *
7586 CATCAAGTCATATGCAGCTCTATCAAATATCCACAATTCTCGTTCTCGAGCTATTTCACTCATTG
1 CATCAAGTCATATGCAGCTCTATCAAATATCCACAATTCTCATTCTCGAGCTATTTCACTCATTA
* *
7651 CCCAAAAAATATTTTACAAGTAATTTCACCAGAAAATTATAAAAAGCACCCTTCCAAATAATCTC
66 CCCAAAAAATAATTTACAAGTAATTCCACCAGAAAATTATAAAAAGCACCCTTCCAAATAATCTC
*
7716 TCCTCATGAAGATCTACTGCTTATAAATCTAGAGTGCCA
131 CCCTCATGAAGATCTACTGCTTATAAATCTAGAGTGCCA
* * *
7755 CATCATGTCATATGCAGCTCTATCAAATACTCCACATTTCTCATTCTCGAGCTATCTT-ATTCAT
1 CATCAAGTCATATGCAGCTCTATCAAATA-TCCACAATTCTCATTCTCGAGCTAT-TTCACTCAT
* * * *
7819 TACCCATAAAATAATTTACTAGTAATTCCACCAGAAACTTATAAAATGCACCCTTCCAAATAATC
64 TACCCAAAAAATAATTTACAAGTAATTCCACCAGAAAATTATAAAAAGCACCCTTCCAAATAATC
7884 TCCCCTCATGAAGATCT
129 TCCCCTCATGAAGATCT
7901 CCTAGCTTTT
Statistics
Matches: 132, Mismatches: 12, Indels: 3
0.90 0.08 0.02
Matches are distributed among these distances:
169 28 0.21
170 102 0.77
171 2 0.02
ACGTcount: A:0.35, C:0.26, G:0.08, T:0.31
Consensus pattern (169 bp):
CATCAAGTCATATGCAGCTCTATCAAATATCCACAATTCTCATTCTCGAGCTATTTCACTCATTA
CCCAAAAAATAATTTACAAGTAATTCCACCAGAAAATTATAAAAAGCACCCTTCCAAATAATCTC
CCCTCATGAAGATCTACTGCTTATAAATCTAGAGTGCCA
Found at i:9262 original size:17 final size:17
Alignment explanation
Indices: 9240--9287 Score: 87
Period size: 17 Copynumber: 2.8 Consensus size: 17
9230 CCATACCCTT
9240 TTTAGATTTATTTTAAA
1 TTTAGATTTATTTTAAA
9257 TTTAGATTTATTTTAAA
1 TTTAGATTTATTTTAAA
*
9274 TTTAAATTTATTTT
1 TTTAGATTTATTTT
9288 CAAAATTTAA
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
17 30 1.00
ACGTcount: A:0.33, C:0.00, G:0.04, T:0.62
Consensus pattern (17 bp):
TTTAGATTTATTTTAAA
Found at i:9320 original size:13 final size:14
Alignment explanation
Indices: 9304--9358 Score: 53
Period size: 14 Copynumber: 4.0 Consensus size: 14
9294 TTAAAAGATT
9304 ATTATAAAGTCC-A
1 ATTATAAAGTCCAA
*
9317 ATTACAAAAGTCCAA
1 ATTA-TAAAGTCCAA
*
9332 ATTATATA-TCCAA
1 ATTATAAAGTCCAA
9345 ATT-TACAAGTCCAA
1 ATTATA-AAGTCCAA
9359 TTGAGCTAAG
Statistics
Matches: 34, Mismatches: 4, Indels: 7
0.76 0.09 0.16
Matches are distributed among these distances:
12 2 0.06
13 13 0.38
14 14 0.41
15 5 0.15
ACGTcount: A:0.47, C:0.18, G:0.05, T:0.29
Consensus pattern (14 bp):
ATTATAAAGTCCAA
Found at i:10139 original size:24 final size:24
Alignment explanation
Indices: 10110--10155 Score: 74
Period size: 24 Copynumber: 1.9 Consensus size: 24
10100 TTATATATTA
*
10110 AATAATTTCATTAATGATAATAAT
1 AATAATTTCATTAATGACAATAAT
*
10134 AATAATTTTATTAATGACAATA
1 AATAATTTCATTAATGACAATA
10156 TTTATTAAAT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
24 20 1.00
ACGTcount: A:0.50, C:0.04, G:0.04, T:0.41
Consensus pattern (24 bp):
AATAATTTCATTAATGACAATAAT
Found at i:10178 original size:10 final size:10
Alignment explanation
Indices: 10163--10187 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
10153 ATATTTATTA
10163 AATAATTAAT
1 AATAATTAAT
10173 AATAATTAAT
1 AATAATTAAT
10183 AATAA
1 AATAA
10188 AAAAAGAAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (10 bp):
AATAATTAAT
Found at i:11226 original size:30 final size:29
Alignment explanation
Indices: 11192--11302 Score: 114
Period size: 29 Copynumber: 3.8 Consensus size: 29
11182 GGAGGTCCTT
* *
11192 AAACTATTAAAAAAATACATTTTTACCCCC
1 AAACT-TTCAAAAAATACATTTTTACCCCA
* * * *
11222 AAACTTCCAAAAATTCCATTTTTAACCTCA
1 AAACTTTCAAAAAATACATTTTT-ACCCCA
* * *
11252 AAACTTTCAAAAATTATATTTTTACCCCG
1 AAACTTTCAAAAAATACATTTTTACCCCA
*
11281 AAACTTTCAAAAAATTCATTTT
1 AAACTTTCAAAAAATACATTTT
11303 GCCCCCGAGA
Statistics
Matches: 66, Mismatches: 14, Indels: 3
0.80 0.17 0.04
Matches are distributed among these distances:
29 37 0.56
30 29 0.44
ACGTcount: A:0.42, C:0.22, G:0.01, T:0.35
Consensus pattern (29 bp):
AAACTTTCAAAAAATACATTTTTACCCCA
Found at i:11242 original size:29 final size:28
Alignment explanation
Indices: 11202--11302 Score: 103
Period size: 30 Copynumber: 3.5 Consensus size: 28
11192 AAACTATTAA
* *
11202 AAAAATACATTTTTACCCCCAAACTTCC
1 AAAAATTCATTTTTACCCCAAAACTTCC
* *
11230 AAAAATTCCATTTTTAACCTCAAAACTTTC
1 AAAAATT-CATTTTT-ACCCCAAAACTTCC
* * *
11260 AAAAATTATATTTTTACCCCGAAACTTTCA
1 AAAAATT-CATTTTTACCCCAAAAC-TTCC
11290 AAAAATTCATTTT
1 AAAAATTCATTTT
11303 GCCCCCGAGA
Statistics
Matches: 59, Mismatches: 11, Indels: 5
0.79 0.15 0.07
Matches are distributed among these distances:
28 6 0.10
29 20 0.34
30 33 0.56
ACGTcount: A:0.41, C:0.23, G:0.01, T:0.36
Consensus pattern (28 bp):
AAAAATTCATTTTTACCCCAAAACTTCC
Found at i:11328 original size:28 final size:28
Alignment explanation
Indices: 11297--11350 Score: 83
Period size: 28 Copynumber: 1.9 Consensus size: 28
11287 TCAAAAAATT
*
11297 CATTTTGCCCCCGAGA-GTCCAAAATTAC
1 CATTTTACCCCCGA-ATGTCCAAAATTAC
11325 CATTTTACCCCCGAATGTCCAAAATT
1 CATTTTACCCCCGAATGTCCAAAATT
11351 TTTGTTTTCT
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
27 1 0.04
28 23 0.96
ACGTcount: A:0.30, C:0.31, G:0.11, T:0.28
Consensus pattern (28 bp):
CATTTTACCCCCGAATGTCCAAAATTAC
Found at i:23955 original size:51 final size:50
Alignment explanation
Indices: 23855--24041 Score: 216
Period size: 51 Copynumber: 3.7 Consensus size: 50
23845 ATTTCATTTA
**
23855 ATACTCACGATGACA--TAGTCATCGGACCTCTTGTTCCGTATAGGAATTCAT
1 ATACTCACGATGACACTTAGTCATCGGACCT-TTAATCCGTAT-GG-ATTCAT
* *
23906 ATACTCACGATGACACTTAGTCATTGGACCTTTAATCCATCATGGATTCAT
1 ATACTCACGATGACACTTAGTCATCGGACCTTTAATCCGT-ATGGATTCAT
* * * *
23957 TTACTCATGATGACACCTAGTCATCGGACCTTTAATCCGTAAAGGATTCAT
1 ATACTCACGATGACACTTAGTCATCGGACCTTTAATCCGT-ATGGATTCAT
* *
24008 TTACTCACGATGTCACTTAGTCATCGGATCCTTT
1 ATACTCACGATGACACTTAGTCATCGGA-CCTTT
24042 CTATTATAGC
Statistics
Matches: 118, Mismatches: 14, Indels: 7
0.85 0.10 0.05
Matches are distributed among these distances:
51 90 0.76
52 13 0.11
53 15 0.13
ACGTcount: A:0.27, C:0.24, G:0.16, T:0.33
Consensus pattern (50 bp):
ATACTCACGATGACACTTAGTCATCGGACCTTTAATCCGTATGGATTCAT
Found at i:24006 original size:102 final size:103
Alignment explanation
Indices: 23856--24041 Score: 270
Period size: 102 Copynumber: 1.8 Consensus size: 103
23846 TTTCATTTAA
** *
23856 TACTCACGATGACATAGTCATCGGACCTCTTGTTCCGTATAGGAATTCATATACTCACGATGACA
1 TACTCACGATGACATAGTCATCGGACCTCTTAATCCGTAAAGGAATTCATATACTCACGATGACA
*
23921 CTTAGTCATTGGA-CCTTTAATCCATCATGGATTCATT
66 CTTAGTCATCGGATCCTTTAATCCATCATGGATTCATT
* * *
23958 TACTCATGATGACACCTAGTCATCGGACCT-TTAATCCGTAAAGG-ATTCATTTACTCACGATGT
1 TACTCACGATGACA--TAGTCATCGGACCTCTTAATCCGTAAAGGAATTCATATACTCACGATGA
24021 CACTTAGTCATCGGATCCTTT
64 CACTTAGTCATCGGATCCTTT
24042 CTATTATAGC
Statistics
Matches: 74, Mismatches: 7, Indels: 5
0.86 0.08 0.06
Matches are distributed among these distances:
102 44 0.59
103 16 0.22
104 14 0.19
ACGTcount: A:0.27, C:0.24, G:0.16, T:0.33
Consensus pattern (103 bp):
TACTCACGATGACATAGTCATCGGACCTCTTAATCCGTAAAGGAATTCATATACTCACGATGACA
CTTAGTCATCGGATCCTTTAATCCATCATGGATTCATT
Found at i:31204 original size:51 final size:51
Alignment explanation
Indices: 31088--31326 Score: 291
Period size: 51 Copynumber: 4.6 Consensus size: 51
31078 TTTCATTTAA
* * ** * *
31088 TACTCACGATGGCA-TATAGTCATCTGACCTCTTGTTCCGTATAGGAATTCATA
1 TACTCACGATGACACT-TAGTCATCAGACCT-TTAATCCGTAAAGG-ATTCATT
* * * * *
31141 TACTCACGATGACACTGAGTCATCAAACCTTTAATCCATCAGGGATTCATT
1 TACTCACGATGACACTTAGTCATCAGACCTTTAATCCGTAAAGGATTCATT
* * *
31192 TACTCATGATGACACTTAGTCATCGGACATTTAATCCGTAAAGGATTCATT
1 TACTCACGATGACACTTAGTCATCAGACCTTTAATCCGTAAAGGATTCATT
*
31243 TACTCACGATGACACTTATTCATCAGACCTTTAATCCGTAAAGGATTCATT
1 TACTCACGATGACACTTAGTCATCAGACCTTTAATCCGTAAAGGATTCATT
*
31294 TACTCACGATGGCACTTAGTCATCAGATCCTTT
1 TACTCACGATGACACTTAGTCATCAGA-CCTTT
31327 CGTTTATAGC
Statistics
Matches: 159, Mismatches: 25, Indels: 5
0.84 0.13 0.03
Matches are distributed among these distances:
51 121 0.76
52 13 0.08
53 24 0.15
54 1 0.01
ACGTcount: A:0.29, C:0.23, G:0.15, T:0.33
Consensus pattern (51 bp):
TACTCACGATGACACTTAGTCATCAGACCTTTAATCCGTAAAGGATTCATT
Found at i:35744 original size:20 final size:19
Alignment explanation
Indices: 35714--35760 Score: 58
Period size: 20 Copynumber: 2.4 Consensus size: 19
35704 AGTAAATGTG
* *
35714 ATAAAATTTAAAATATTTTA
1 ATAATATTTAAAAT-TTTAA
*
35734 ATTATATTTAAAATTTTAA
1 ATAATATTTAAAATTTTAA
35753 ATAATATT
1 ATAATATT
35761 ATTTAATTTT
Statistics
Matches: 23, Mismatches: 4, Indels: 1
0.82 0.14 0.04
Matches are distributed among these distances:
19 11 0.48
20 12 0.52
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (19 bp):
ATAATATTTAAAATTTTAA
Found at i:35769 original size:27 final size:27
Alignment explanation
Indices: 35715--35769 Score: 67
Period size: 27 Copynumber: 2.0 Consensus size: 27
35705 GTAAATGTGA
*
35715 TAAAATTTAAAATATTTTAATTATATT
1 TAAAATTTAAAATATATTAATTATATT
* *
35742 TAAAATTTTAAATAATATTATTTA-ATT
1 TAAAATTTAAAAT-ATATTAATTATATT
35769 T
1 T
35770 TTTAATCGAA
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
27 16 0.67
28 8 0.33
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (27 bp):
TAAAATTTAAAATATATTAATTATATT
Found at i:36909 original size:23 final size:24
Alignment explanation
Indices: 36883--36945 Score: 74
Period size: 24 Copynumber: 2.7 Consensus size: 24
36873 GACTTAATAA
*
36883 AACATGTTCACGAACAT-TAAACG
1 AACATGTTTACGAACATATAAACG
* **
36906 AACATGTTTATGAACATATAATTG
1 AACATGTTTACGAACATATAAACG
*
36930 AACTTGTTTACGAACA
1 AACATGTTTACGAACA
36946 ATGTTAATAA
Statistics
Matches: 33, Mismatches: 6, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
23 15 0.45
24 18 0.55
ACGTcount: A:0.41, C:0.16, G:0.13, T:0.30
Consensus pattern (24 bp):
AACATGTTTACGAACATATAAACG
Found at i:46881 original size:33 final size:34
Alignment explanation
Indices: 46832--46898 Score: 127
Period size: 33 Copynumber: 2.0 Consensus size: 34
46822 GTGTGTAAAA
46832 TTTTTATGTAGTTTTTACCAAGTATGCATTCATT
1 TTTTTATGTAGTTTTTACCAAGTATGCATTCATT
46866 TTTTTATGTAG-TTTTACCAAGTATGCATTCATT
1 TTTTTATGTAGTTTTTACCAAGTATGCATTCATT
46899 CATTTATTCA
Statistics
Matches: 33, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
33 22 0.67
34 11 0.33
ACGTcount: A:0.24, C:0.12, G:0.12, T:0.52
Consensus pattern (34 bp):
TTTTTATGTAGTTTTTACCAAGTATGCATTCATT
Found at i:69973 original size:78 final size:78
Alignment explanation
Indices: 69833--69979 Score: 215
Period size: 78 Copynumber: 1.9 Consensus size: 78
69823 AGATTTAATT
* ** *
69833 CGATGGGTAAGATTCAACATGTGTTGTGGATTCTCGACAGCTTGAGTGAGAAGCATCAAATCATT
1 CGATGGGTAAGATCCAACATAAGTTATGGATTCTCGACAGCTTGAGTGAGAAGCATCAAATCATT
69898 ATTTGGTAATTCA
66 ATTTGGTAATTCA
* * *
69911 CGATGGGTGAGATCCAACATAAGTTATGGATTCTCGACAGCTTGTGTGAGCAA-CATCGAATCAT
1 CGATGGGTAAGATCCAACATAAGTTATGGATTCTCGACAGCTTGAGTGAG-AAGCATCAAATCAT
69975 TATTT
65 TATTT
69980 ACCGATTGTT
Statistics
Matches: 61, Mismatches: 7, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
78 59 0.97
79 2 0.03
ACGTcount: A:0.29, C:0.16, G:0.24, T:0.31
Consensus pattern (78 bp):
CGATGGGTAAGATCCAACATAAGTTATGGATTCTCGACAGCTTGAGTGAGAAGCATCAAATCATT
ATTTGGTAATTCA
Found at i:72891 original size:21 final size:20
Alignment explanation
Indices: 72867--72915 Score: 53
Period size: 21 Copynumber: 2.4 Consensus size: 20
72857 AATTTAATTA
72867 AAAAAATAAAAAATTTACCAT
1 AAAAAATAAAAAATTTA-CAT
** * *
72888 AAAATTTATAAAATTTAGAT
1 AAAAAATAAAAAATTTACAT
72908 AAAAAATA
1 AAAAAATA
72916 TTTGATAATT
Statistics
Matches: 22, Mismatches: 6, Indels: 1
0.76 0.21 0.03
Matches are distributed among these distances:
20 8 0.36
21 14 0.64
ACGTcount: A:0.65, C:0.04, G:0.02, T:0.29
Consensus pattern (20 bp):
AAAAAATAAAAAATTTACAT
Found at i:74518 original size:16 final size:16
Alignment explanation
Indices: 74497--74527 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
74487 ACATGTAGTA
74497 AAAAATGATAAAAAAT
1 AAAAATGATAAAAAAT
*
74513 AAAAATTATAAAAAA
1 AAAAATGATAAAAAA
74528 AGATTAAATT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.77, C:0.00, G:0.03, T:0.19
Consensus pattern (16 bp):
AAAAATGATAAAAAAT
Found at i:74527 original size:18 final size:19
Alignment explanation
Indices: 74504--74550 Score: 53
Period size: 18 Copynumber: 2.5 Consensus size: 19
74494 GTAAAAAATG
74504 ATAAAAAATAAAAATTATA
1 ATAAAAAATAAAAATTATA
* *
74523 A-AAAAAGAT-TAAATTTTA
1 ATAAAAA-ATAAAAATTATA
74541 ATAAAAAATA
1 ATAAAAAATA
74551 TAGAAGTTTA
Statistics
Matches: 23, Mismatches: 2, Indels: 6
0.74 0.06 0.19
Matches are distributed among these distances:
18 15 0.65
19 8 0.35
ACGTcount: A:0.70, C:0.00, G:0.02, T:0.28
Consensus pattern (19 bp):
ATAAAAAATAAAAATTATA
Found at i:74617 original size:10 final size:9
Alignment explanation
Indices: 74598--74679 Score: 53
Period size: 10 Copynumber: 8.9 Consensus size: 9
74588 GTATTTGTTT
74598 TATAAAATA
1 TATAAAATA
74607 TATAGAAATA
1 TATA-AAATA
*
74617 TAAAAAAT-
1 TATAAAATA
*
74625 TATAAAATTT
1 TATAAAA-TA
74635 TATAAAATCA
1 TATAAAAT-A
*
74645 TAAGAAAAT-
1 T-ATAAAATA
74654 TATAAAA-A
1 TATAAAATA
* *
74662 TTTAAAGAAA
1 TATAAA-ATA
74672 TATAAAAT
1 TATAAAAT
74680 CTGTAAAAAA
Statistics
Matches: 57, Mismatches: 8, Indels: 16
0.70 0.10 0.20
Matches are distributed among these distances:
8 16 0.28
9 13 0.23
10 22 0.39
11 6 0.11
ACGTcount: A:0.63, C:0.01, G:0.04, T:0.32
Consensus pattern (9 bp):
TATAAAATA
Found at i:74661 original size:38 final size:39
Alignment explanation
Indices: 74595--74703 Score: 113
Period size: 38 Copynumber: 2.9 Consensus size: 39
74585 ATCGTATTTG
74595 TTTTATAAAAT-ATATAG-AAA-TATAAAAAATTATAAA-A
1 TTTTATAAAATCATA-AGAAAATTAT-AAAAATTATAAAGA
74632 TTTTATAAAATCATAAGAAAATTATAAAAATT-TAAAGA
1 TTTTATAAAATCATAAGAAAATTATAAAAATTATAAAGA
** * *
74670 -AATATAAAATCTGTAAAAAAATTATAAAAATTAT
1 TTTTATAAAATC-ATAAGAAAATTATAAAAATTAT
74704 CGTGCTAACT
Statistics
Matches: 62, Mismatches: 4, Indels: 10
0.82 0.05 0.13
Matches are distributed among these distances:
37 26 0.42
38 32 0.52
39 4 0.06
ACGTcount: A:0.61, C:0.02, G:0.04, T:0.34
Consensus pattern (39 bp):
TTTTATAAAATCATAAGAAAATTATAAAAATTATAAAGA
Found at i:74667 original size:8 final size:9
Alignment explanation
Indices: 74597--74703 Score: 60
Period size: 9 Copynumber: 11.4 Consensus size: 9
74587 CGTATTTGTT
74597 TTAT-AAAA
1 TTATAAAAA
*
74605 TATATAGAAA
1 T-TATAAAAA
74615 -TATAAAAAA
1 TTAT-AAAAA
74624 TTAT-AAAA
1 TTATAAAAA
*
74632 TTTTATAAAA
1 TTATA-AAAA
*
74642 TCATAAGAAAA
1 TTAT-A-AAAA
74653 TTATAAAAA
1 TTATAAAAA
74662 TT-TAAAGAA
1 TTATAAA-AA
* *
74671 ATATAAAATC
1 TTATAAAA-A
*
74681 TGTAAAAAAA
1 T-TATAAAAA
74691 TTATAAAAA
1 TTATAAAAA
74700 TTAT
1 TTAT
74704 CGTGCTAACT
Statistics
Matches: 75, Mismatches: 13, Indels: 21
0.69 0.12 0.19
Matches are distributed among these distances:
8 15 0.20
9 28 0.37
10 18 0.24
11 14 0.19
ACGTcount: A:0.62, C:0.02, G:0.04, T:0.33
Consensus pattern (9 bp):
TTATAAAAA
Found at i:74669 original size:20 final size:21
Alignment explanation
Indices: 74646--74701 Score: 68
Period size: 19 Copynumber: 2.9 Consensus size: 21
74636 ATAAAATCAT
74646 AAGAAAATTATAAAAATT-TA
1 AAGAAAATTATAAAAATTGTA
74666 AAG-AAA-TAT-AAAATCTGTA
1 AAGAAAATTATAAAAAT-TGTA
74685 AA-AAAATTATAAAAATT
1 AAGAAAATTATAAAAATT
74702 ATCGTGCTAA
Statistics
Matches: 31, Mismatches: 0, Indels: 10
0.76 0.00 0.24
Matches are distributed among these distances:
17 5 0.16
18 4 0.13
19 10 0.32
20 7 0.23
21 5 0.16
ACGTcount: A:0.64, C:0.02, G:0.05, T:0.29
Consensus pattern (21 bp):
AAGAAAATTATAAAAATTGTA
Found at i:74698 original size:10 final size:10
Alignment explanation
Indices: 74615--74703 Score: 57
Period size: 10 Copynumber: 9.3 Consensus size: 10
74605 TATATAGAAA
74615 TATAAAAAAT
1 TATAAAAAAT
74625 TAT--AAAAT
1 TATAAAAAAT
* *
74633 TTTATAAAAT
1 TATAAAAAAT
*
74643 CATAAGAAAAT
1 TATAA-AAAAT
74654 TAT-AAAAAT
1 TATAAAAAAT
74663 T-TAAAGAAA-
1 TATAAA-AAAT
**
74672 TATAAAATCT
1 TATAAAAAAT
74682 GTA-AAAAAAT
1 -TATAAAAAAT
74692 TAT-AAAAAT
1 TATAAAAAAT
74701 TAT
1 TAT
74704 CGTGCTAACT
Statistics
Matches: 61, Mismatches: 9, Indels: 19
0.69 0.10 0.21
Matches are distributed among these distances:
8 8 0.13
9 21 0.34
10 23 0.38
11 9 0.15
ACGTcount: A:0.62, C:0.02, G:0.03, T:0.33
Consensus pattern (10 bp):
TATAAAAAAT
Found at i:74972 original size:32 final size:29
Alignment explanation
Indices: 74916--74979 Score: 74
Period size: 32 Copynumber: 2.1 Consensus size: 29
74906 TTTTTTCTAA
74916 TTTTTATATTTTTATTAAAATTTAATAATTT
1 TTTTTATATTTTTATTAAAATTT-A-AATTT
* **
74947 TTTTTATGATTTTTATTGATTTTTAAATTT
1 TTTTTAT-ATTTTTATTAAAATTTAAATTT
74977 TTT
1 TTT
74980 ATAGTTTTTT
Statistics
Matches: 29, Mismatches: 3, Indels: 3
0.83 0.09 0.09
Matches are distributed among these distances:
30 8 0.28
31 8 0.28
32 13 0.45
ACGTcount: A:0.28, C:0.00, G:0.03, T:0.69
Consensus pattern (29 bp):
TTTTTATATTTTTATTAAAATTTAAATTT
Found at i:74988 original size:40 final size:39
Alignment explanation
Indices: 74864--74990 Score: 103
Period size: 40 Copynumber: 3.1 Consensus size: 39
74854 CATTTTATGA
* ** *
74864 TTTTTTATGATTTTTATAAAAGTTTACATTATTTTATAATTT
1 TTTTTTATGATTTTTAT-TATTTTTAAATT-TTTTATAA-TT
* * ** *
74906 TTTTTTCTAATTTTTA-TATTTTTATTAAAATTTAATAATT
1 TTTTTTATGATTTTTATTATTTTTA--AATTTTTTATAATT
*
74946 TTTTTTATGATTTTTATTGATTTTTAAATTTTTTATAGTT
1 TTTTTTATGATTTTTATT-ATTTTTAAATTTTTTATAATT
74986 TTTTT
1 TTTTT
74991 ATCACATGCC
Statistics
Matches: 66, Mismatches: 15, Indels: 10
0.73 0.16 0.11
Matches are distributed among these distances:
40 36 0.55
41 8 0.12
42 22 0.33
ACGTcount: A:0.28, C:0.02, G:0.04, T:0.67
Consensus pattern (39 bp):
TTTTTTATGATTTTTATTATTTTTAAATTTTTTATAATT
Found at i:77385 original size:15 final size:15
Alignment explanation
Indices: 77361--77412 Score: 52
Period size: 15 Copynumber: 3.4 Consensus size: 15
77351 AGTTGAATAC
*
77361 AAAATTTAAAATTAA
1 AAAATATAAAATTAA
*
77376 AAAATATAAAA-AATA
1 AAAATATAAAATTA-A
77391 AAAATAATAAAATTAA
1 AAAAT-ATAAAATTAA
*
77407 AGAATA
1 AAAATA
77413 AAGTCCAAAT
Statistics
Matches: 30, Mismatches: 4, Indels: 6
0.75 0.10 0.15
Matches are distributed among these distances:
14 1 0.03
15 17 0.57
16 11 0.37
17 1 0.03
ACGTcount: A:0.73, C:0.00, G:0.02, T:0.25
Consensus pattern (15 bp):
AAAATATAAAATTAA
Found at i:77392 original size:22 final size:22
Alignment explanation
Indices: 77367--77414 Score: 62
Period size: 22 Copynumber: 2.2 Consensus size: 22
77357 ATACAAAATT
*
77367 TAAAATTAA-AAAATATAAAAAA
1 TAAAAATAATAAAAT-TAAAAAA
*
77389 TAAAAATAATAAAATTAAAGAA
1 TAAAAATAATAAAATTAAAAAA
77411 TAAA
1 TAAA
77415 GTCCAAATTC
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
22 18 0.78
23 5 0.22
ACGTcount: A:0.75, C:0.00, G:0.02, T:0.23
Consensus pattern (22 bp):
TAAAAATAATAAAATTAAAAAA
Found at i:77412 original size:16 final size:15
Alignment explanation
Indices: 77367--77413 Score: 51
Period size: 16 Copynumber: 3.0 Consensus size: 15
77357 ATACAAAATT
77367 TAAAATTAAAAA-ATA
1 TAAAATTAAAAATA-A
*
77382 TAAAAAATAAAAATAA
1 T-AAAATTAAAAATAA
77398 TAAAATTAAAGAATAA
1 TAAAATTAAA-AATAA
77414 AGTCCAAATT
Statistics
Matches: 27, Mismatches: 2, Indels: 5
0.79 0.06 0.15
Matches are distributed among these distances:
15 9 0.33
16 17 0.63
17 1 0.04
ACGTcount: A:0.74, C:0.00, G:0.02, T:0.23
Consensus pattern (15 bp):
TAAAATTAAAAATAA
Found at i:77693 original size:9 final size:9
Alignment explanation
Indices: 77681--77733 Score: 52
Period size: 9 Copynumber: 5.6 Consensus size: 9
77671 TCAAAATTTG
77681 AAAAAAAAT
1 AAAAAAAAT
*
77690 AAAAAAATCT
1 AAAAAAA-AT
*
77700 AAAAATAAT
1 AAAAAAAAT
77709 CAAAATAAAAT
1 -AAAA-AAAAT
*
77720 ATAAAAAAT
1 AAAAAAAAT
77729 AAAAA
1 AAAAA
77734 TATTAACATA
Statistics
Matches: 35, Mismatches: 6, Indels: 6
0.74 0.13 0.13
Matches are distributed among these distances:
9 17 0.49
10 14 0.40
11 4 0.11
ACGTcount: A:0.79, C:0.04, G:0.00, T:0.17
Consensus pattern (9 bp):
AAAAAAAAT
Found at i:79801 original size:18 final size:18
Alignment explanation
Indices: 79780--79814 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
79770 CTTTTAAAAA
*
79780 ATTTTATTTTAATTTTTC
1 ATTTAATTTTAATTTTTC
*
79798 ATTTAATTTTTATTTTT
1 ATTTAATTTTAATTTTT
79815 TTTTACTCTT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.23, C:0.03, G:0.00, T:0.74
Consensus pattern (18 bp):
ATTTAATTTTAATTTTTC
Found at i:79855 original size:23 final size:24
Alignment explanation
Indices: 79810--79855 Score: 58
Period size: 23 Copynumber: 2.0 Consensus size: 24
79800 TTAATTTTTA
* *
79810 TTTTTTTTTACTCTTGAACTTATG
1 TTTTTTTTTACTCTTAAAATTATG
*
79834 TTTTTTTTT-TTCTTAAAATTAT
1 TTTTTTTTTACTCTTAAAATTAT
79856 CCTAAAATGA
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
23 10 0.53
24 9 0.47
ACGTcount: A:0.20, C:0.09, G:0.04, T:0.67
Consensus pattern (24 bp):
TTTTTTTTTACTCTTAAAATTATG
Found at i:80088 original size:19 final size:19
Alignment explanation
Indices: 80064--80100 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
80054 TAAATGTTTA
80064 AATAATTATTATATTTTTG
1 AATAATTATTATATTTTTG
* *
80083 AATAATTTTTTTATTTTT
1 AATAATTATTATATTTTT
80101 AAAAATTTAA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 16 1.00
ACGTcount: A:0.32, C:0.00, G:0.03, T:0.65
Consensus pattern (19 bp):
AATAATTATTATATTTTTG
Found at i:80595 original size:20 final size:20
Alignment explanation
Indices: 80572--80609 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
80562 CGTATAAACC
*
80572 CAGTATAAGAGTATTAAATA
1 CAGTATAAGAGAATTAAATA
*
80592 CAGTATCAGAGAATTAAA
1 CAGTATAAGAGAATTAAA
80610 AACGAATATT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.50, C:0.08, G:0.16, T:0.26
Consensus pattern (20 bp):
CAGTATAAGAGAATTAAATA
Found at i:81508 original size:41 final size:37
Alignment explanation
Indices: 81408--81511 Score: 93
Period size: 37 Copynumber: 2.7 Consensus size: 37
81398 TTCGAAGCAA
*
81408 TAAAGTGACACCCAGTGTCTCATCTG-TCTAGCCGAAG
1 TAAAATGACACCCAGTGTCTCATC-GATCTAGCCGAAG
* ** ** *
81445 TAAAGTGGTACCCAGTACCTCATCGAATCTATCCGAAG
1 TAAAATGACACCCAGTGTCTCATCG-ATCTAGCCGAAG
81483 TAAAATAATGACACCCAGTGTCTCATCGA
1 T--AA-AATGACACCCAGTGTCTCATCGA
81512 CTCAAGGNNN
Statistics
Matches: 52, Mismatches: 10, Indels: 7
0.75 0.14 0.10
Matches are distributed among these distances:
36 1 0.02
37 20 0.38
38 11 0.21
40 3 0.06
41 17 0.33
ACGTcount: A:0.32, C:0.26, G:0.18, T:0.24
Consensus pattern (37 bp):
TAAAATGACACCCAGTGTCTCATCGATCTAGCCGAAG
Found at i:82303 original size:95 final size:95
Alignment explanation
Indices: 82125--82310 Score: 243
Period size: 95 Copynumber: 1.9 Consensus size: 95
82115 GGGAAAAAGA
* * * *
82125 TATTTGATTATCTCGATTTGAAGAAAGGTTGCACCTAGTAAGTTAAGGCTCAATATTTCAGAATC
1 TATTCGATTATCTCGATTTGAAGAAAGATTGCACCTAGTAAGTTAAGGCACAATATTTCAAAATC
*
82190 GAATATAAGGAAACATTGCCTCGATTAAGGG
66 GAATAAAAGG-AACATTGCCTCGATTAAGGG
* *
82221 TATTCGATTATTTCGATTTGAGGAAA-ATTGCACCTAGTAAGTTAAGGCACAA-ATTTTCGAAAA
1 TATTCGATTATCTCGATTTGAAGAAAGATTGCACCTAGTAAGTTAAGGCACAATA-TTTC-AAAA
*
82284 TCGAAATAAAAGG-ATATTGCCTCGATT
64 TCG-AATAAAAGGAACATTGCCTCGATT
82311 TTAAAGTTTT
Statistics
Matches: 79, Mismatches: 8, Indels: 7
0.84 0.09 0.07
Matches are distributed among these distances:
94 1 0.01
95 41 0.52
96 29 0.37
97 8 0.10
ACGTcount: A:0.35, C:0.13, G:0.19, T:0.32
Consensus pattern (95 bp):
TATTCGATTATCTCGATTTGAAGAAAGATTGCACCTAGTAAGTTAAGGCACAATATTTCAAAATC
GAATAAAAGGAACATTGCCTCGATTAAGGG
Found at i:82739 original size:59 final size:59
Alignment explanation
Indices: 82675--83044 Score: 419
Period size: 59 Copynumber: 6.3 Consensus size: 59
82665 AAATGGTAAC
* * * * * *
82675 TTTTGGAAGTTTCAGGGTC-AAAATGGAATTTTTGGAAGTTTTGGGGTCAAAAATGGGAT
1 TTTTAGAAGTTTCGGGGTCAAAAATGGGATTTTTGGAAGTTTGGGGGT-AAAAATAGAAT
* * * * *
82734 TTTTGGAAGTTTTGGGGTCAAAAATGGGATTTTTGGAAATTTGAGGGTAAAAATTGAAT
1 TTTTAGAAGTTTCGGGGTCAAAAATGGGATTTTTGGAAGTTTGGGGGTAAAAATAGAAT
* *
82793 TTTTGGAAGTTTCGGGGTCAAAAATGTGATTTTTGGAAGTTTGGGGGTAAAAATAGAAT
1 TTTTAGAAGTTTCGGGGTCAAAAATGGGATTTTTGGAAGTTTGGGGGTAAAAATAGAAT
* * * ** *
82852 TTTTAGAAGCTTT-GAGGGT-AAAAACGGAATTTTTAGAA-TCTTCAAGGGTAAAAATGGAAT
1 TTTTAGAAG-TTTCG-GGGTCAAAAATGGGATTTTTGGAAGT-TT-GGGGGTAAAAATAGAAT
* * *
82912 TTTTAGAAGTTTTGGGGTCAAAAATGGGATTTTTGAAAGTTCGGGGGTAAAAATAGAAT
1 TTTTAGAAGTTTCGGGGTCAAAAATGGGATTTTTGGAAGTTTGGGGGTAAAAATAGAAT
* * * *
82971 TTTTAGAAGTTTCGAGGT-AAAAATGGGATTTTTAGAAGTTCGAGGGTAAAAATAGAAT
1 TTTTAGAAGTTTCGGGGTCAAAAATGGGATTTTTGGAAGTTTGGGGGTAAAAATAGAAT
83029 TTTTAGAAG-TTCGGGG
1 TTTTAGAAGTTTCGGGG
83045 GTAAAAACTA
Statistics
Matches: 268, Mismatches: 35, Indels: 18
0.83 0.11 0.06
Matches are distributed among these distances:
57 6 0.02
58 47 0.18
59 143 0.53
60 71 0.26
61 1 0.00
ACGTcount: A:0.33, C:0.04, G:0.28, T:0.35
Consensus pattern (59 bp):
TTTTAGAAGTTTCGGGGTCAAAAATGGGATTTTTGGAAGTTTGGGGGTAAAAATAGAAT
Found at i:83040 original size:29 final size:30
Alignment explanation
Indices: 82664--83074 Score: 386
Period size: 30 Copynumber: 13.9 Consensus size: 30
82654 ATCTAGGATT
* * *
82664 AAAATGGTAACTTTTGGAAGTTTC-AGGGTC
1 AAAATGG-AATTTTTAGAAGTTTCGAGGGTA
* *
82694 AAAATGGAATTTTTGGAAGTTTTG-GGGTCA
1 AAAATGGAATTTTTAGAAGTTTCGAGGGT-A
* * *
82724 AAAATGGGATTTTTGGAAGTTTTG-GGGTCA
1 AAAATGGAATTTTTAGAAGTTTCGAGGGT-A
* * *
82754 AAAATGGGATTTTTGGAAATTT-GAGGGTA
1 AAAATGGAATTTTTAGAAGTTTCGAGGGTA
* *
82783 AAAATTGAATTTTTGGAAGTTTCG-GGGTCA
1 AAAATGGAATTTTTAGAAGTTTCGAGGGT-A
* *
82813 AAAATGTG-ATTTTTGGAAGTTT-GGGGGTA
1 AAAATG-GAATTTTTAGAAGTTTCGAGGGTA
*
82842 AAAATAGAATTTTTAGAAGCTTT-GAGGGTA
1 AAAATGGAATTTTTAGAAG-TTTCGAGGGTA
* *
82872 AAAACGGAATTTTTAGAA-TCTTCAAGGGTA
1 AAAATGGAATTTTTAGAAGT-TTCGAGGGTA
*
82902 AAAATGGAATTTTTAGAAGTTTTG-GGGTCA
1 AAAATGGAATTTTTAGAAGTTTCGAGGGT-A
* *
82932 AAAATGGGATTTTT-GAAAG-TTCGGGGGTA
1 AAAATGGAATTTTTAG-AAGTTTCGAGGGTA
*
82961 AAAATAGAATTTTTAGAAGTTTCGA-GGTA
1 AAAATGGAATTTTTAGAAGTTTCGAGGGTA
*
82990 AAAATGGGATTTTTAGAAG-TTCGAGGGTA
1 AAAATGGAATTTTTAGAAGTTTCGAGGGTA
* *
83019 AAAATAGAATTTTTAGAAG-TTCGGGGGTA
1 AAAATGGAATTTTTAGAAGTTTCGAGGGTA
*
83048 AAAACT-AAATTTTTAGAAGTTTCGAGG
1 AAAA-TGGAATTTTTAGAAGTTTCGAGG
83075 ACCTGCAAGG
Statistics
Matches: 331, Mismatches: 30, Indels: 40
0.83 0.07 0.10
Matches are distributed among these distances:
28 7 0.02
29 153 0.46
30 169 0.51
31 2 0.01
ACGTcount: A:0.34, C:0.04, G:0.27, T:0.34
Consensus pattern (30 bp):
AAAATGGAATTTTTAGAAGTTTCGAGGGTA
Found at i:93035 original size:16 final size:17
Alignment explanation
Indices: 93016--93049 Score: 61
Period size: 17 Copynumber: 2.1 Consensus size: 17
93006 GTTTCAGGGA
93016 ATATGT-CAAAATCTTC
1 ATATGTCCAAAATCTTC
93032 ATATGTCCAAAATCTTC
1 ATATGTCCAAAATCTTC
93049 A
1 A
93050 GGTGCATCCA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 6 0.35
17 11 0.65
ACGTcount: A:0.38, C:0.21, G:0.06, T:0.35
Consensus pattern (17 bp):
ATATGTCCAAAATCTTC
Found at i:96236 original size:20 final size:21
Alignment explanation
Indices: 96211--96264 Score: 65
Period size: 20 Copynumber: 2.6 Consensus size: 21
96201 AAAAATATTT
*
96211 GAAAAAAAAGTTTGAAA-CAA
1 GAAAAAAAAGTTGGAAAGCAA
*
96231 GAAAAAAAAGCTGGAAATGCAA
1 GAAAAAAAAGTTGGAAA-GCAA
*
96253 AAAAAAAAAGTT
1 GAAAAAAAAGTT
96265 ATTAAATTCT
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
20 15 0.54
22 13 0.46
ACGTcount: A:0.65, C:0.06, G:0.17, T:0.13
Consensus pattern (21 bp):
GAAAAAAAAGTTGGAAAGCAA
Found at i:100310 original size:61 final size:58
Alignment explanation
Indices: 100198--100364 Score: 195
Period size: 52 Copynumber: 2.9 Consensus size: 58
100188 TTCGCATTTG
* * * *
100198 ATACTCACGATGACACAGAGTCATCGGACCT-TTAATCCGTAATGGATTTCATTTCATTCAT
1 ATACTCACGATGACACATAGCCATCGGACCTCATAATCCGTAAAGGA-TTCA--T-ATTCAT
*
100259 ATACTCACGATGACACATAGCCATCGGACCTCATAATCTGTAAAGG------ATTCAT
1 ATACTCACGATGACACATAGCCATCGGACCTCATAATCCGTAAAGGATTCATATTCAT
*
100311 ATACTCACGATAACACATAGCCATCGGACCTCATAATCCGTAAAGGATTCATAT
1 ATACTCACGATGACACATAGCCATCGGACCTCATAATCCGTAAAGGATTCATAT
100365 ACTCACGATG
Statistics
Matches: 92, Mismatches: 7, Indels: 17
0.79 0.06 0.15
Matches are distributed among these distances:
52 50 0.54
58 2 0.02
61 29 0.32
62 11 0.12
ACGTcount: A:0.34, C:0.25, G:0.14, T:0.28
Consensus pattern (58 bp):
ATACTCACGATGACACATAGCCATCGGACCTCATAATCCGTAAAGGATTCATATTCAT
Found at i:100331 original size:52 final size:52
Alignment explanation
Indices: 100253--100390 Score: 240
Period size: 52 Copynumber: 2.7 Consensus size: 52
100243 ATTTCATTTC
*
100253 ATTCATATACTCACGATGACACATAGCCATCGGACCTCATAATCTGTAAAGG
1 ATTCATATACTCACGATGACACATAGCCATCGGACCTCATAATCCGTAAAGG
*
100305 ATTCATATACTCACGATAACACATAGCCATCGGACCTCATAATCCGTAAAGG
1 ATTCATATACTCACGATGACACATAGCCATCGGACCTCATAATCCGTAAAGG
* *
100357 ATTCATATACTCACGATGACACGTAGTCATCGGA
1 ATTCATATACTCACGATGACACATAGCCATCGGA
100391 TTCTTTTTCA
Statistics
Matches: 81, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
52 81 1.00
ACGTcount: A:0.35, C:0.25, G:0.15, T:0.25
Consensus pattern (52 bp):
ATTCATATACTCACGATGACACATAGCCATCGGACCTCATAATCCGTAAAGG
Found at i:103497 original size:29 final size:29
Alignment explanation
Indices: 103428--103497 Score: 70
Period size: 29 Copynumber: 2.4 Consensus size: 29
103418 TTCTTGATAC
* * *
103428 AATATGAACACTTGTACAAAGTACTTGAT
1 AATATAAACACCTGTACAAAGCACTTGAT
* **
103457 AATGTAGTCACCTGTACATAA-CACTTGAT
1 AATATAAACACCTGTACA-AAGCACTTGAT
103486 AATATAAACACC
1 AATATAAACACC
103498 GATAGATAAT
Statistics
Matches: 31, Mismatches: 9, Indels: 2
0.74 0.21 0.05
Matches are distributed among these distances:
29 29 0.94
30 2 0.06
ACGTcount: A:0.41, C:0.19, G:0.11, T:0.29
Consensus pattern (29 bp):
AATATAAACACCTGTACAAAGCACTTGAT
Found at i:105082 original size:157 final size:158
Alignment explanation
Indices: 104696--105142 Score: 675
Period size: 157 Copynumber: 2.8 Consensus size: 158
104686 TATCATGTAT
*
104696 TGCTCACACGAGCTGTGGGTCGAGATGTTAAGCTACACGATGCTGCTCACATGAGCTGTGAAGAA
1 TGCTCACACGAGCTGTGGGTCGAGATGTTAAGCTACACGATGCTGCTCACATGAGCTGTGGAGAA
* * * *
104761 TCCACAACAAATGTTGGATCTCAACCATCGATAGGACATCTAAGACTAGCACCCATATAACATGT
66 TCCGCAACAAATGATGGATCTCAACCATCGGTAGGACATCTAAGACCAGCACCCATATAACATGT
* * *
104826 AATGCTCACACGAGTTATGAAGTGATCC
131 AATGCTCACACAAGCTATGAAGTGAGCC
* * *
104854 TGCTCACACGAGTTGTGGGTC-AGGATGTTAAGCTACACGATGCTGCTCACACGAGTTGTGGAGA
1 TGCTCACACGAGCTGTGGGTCGA-GATGTTAAGCTACACGATGCTGCTCACATGAGCTGTGGAGA
* *
104918 ATCCGCAACAAATGCTGGATCTCAGCCATCGGTAGGACATCTAAGACCAGCACCCATATAACATG
65 ATCCGCAACAAATGATGGATCTCAACCATCGGTAGGACATCTAAGACCAGCACCCATATAACATG
* *
104983 TAATGCTCA-ACAAGCTGTGAAGTGGGCC
130 TAATGCTCACACAAGCTATGAAGTGAGCC
* *
105011 TGCTCACATGAGCTGTGGGTCGAGATGTTAAGCTACACGATGTTGCTCACATGAGCTGTGGAGAA
1 TGCTCACACGAGCTGTGGGTCGAGATGTTAAGCTACACGATGCTGCTCACATGAGCTGTGGAGAA
* * *
105076 TTCGCAACAAAT-ATCGGATCTCAACCATCAGTAGGACATCTAAGACCATCACCCATATAACATG
66 TCCGCAACAAATGAT-GGATCTCAACCATCGGTAGGACATCTAAGACCAGCACCCATATAACATG
105140 TAA
130 TAA
105143 ATCCCGAAAT
Statistics
Matches: 262, Mismatches: 24, Indels: 7
0.89 0.08 0.02
Matches are distributed among these distances:
156 1 0.00
157 133 0.51
158 128 0.49
ACGTcount: A:0.31, C:0.23, G:0.23, T:0.23
Consensus pattern (158 bp):
TGCTCACACGAGCTGTGGGTCGAGATGTTAAGCTACACGATGCTGCTCACATGAGCTGTGGAGAA
TCCGCAACAAATGATGGATCTCAACCATCGGTAGGACATCTAAGACCAGCACCCATATAACATGT
AATGCTCACACAAGCTATGAAGTGAGCC
Found at i:110590 original size:40 final size:40
Alignment explanation
Indices: 110535--110614 Score: 151
Period size: 40 Copynumber: 2.0 Consensus size: 40
110525 CTTTGAAATA
110535 TTCTATGTCCTATTATAACACATTTATTATTACTAGACAT
1 TTCTATGTCCTATTATAACACATTTATTATTACTAGACAT
*
110575 TTCTATGTCCTATTATAACATATTTATTATTACTAGACAT
1 TTCTATGTCCTATTATAACACATTTATTATTACTAGACAT
110615 GTCTCACTTG
Statistics
Matches: 39, Mismatches: 1, Indels: 0
0.98 0.03 0.00
Matches are distributed among these distances:
40 39 1.00
ACGTcount: A:0.33, C:0.16, G:0.05, T:0.46
Consensus pattern (40 bp):
TTCTATGTCCTATTATAACACATTTATTATTACTAGACAT
Found at i:116184 original size:15 final size:15
Alignment explanation
Indices: 116164--116204 Score: 73
Period size: 15 Copynumber: 2.7 Consensus size: 15
116154 GTACAGATCT
*
116164 AAATGGCCCATTTAC
1 AAATGGCCCAATTAC
116179 AAATGGCCCAATTAC
1 AAATGGCCCAATTAC
116194 AAATGGCCCAA
1 AAATGGCCCAA
116205 GATTCCAAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
15 25 1.00
ACGTcount: A:0.39, C:0.27, G:0.15, T:0.20
Consensus pattern (15 bp):
AAATGGCCCAATTAC
Found at i:117950 original size:29 final size:29
Alignment explanation
Indices: 117901--118493 Score: 365
Period size: 30 Copynumber: 20.0 Consensus size: 29
117891 GGAGGTCCCT
117901 AAACTATCCAAAAAT-TCCATTTTTACCCCC
1 AAACT-TCCAAAAATCT-CATTTTTACCCCC
* * *
117931 GAACTTCCAAAAATCTCATTTTTAACACCG
1 AAACTTCCAAAAATCTCATTTTT-ACCCCC
**
117961 AAACTTATAAAAAT-TCCATTTTTA-CCCC
1 AAACTTCCAAAAATCT-CATTTTTACCCCC
* * * *
117989 AAACTTCAAAAAATCCCATTTTTGACCTCA
1 AAACTTCCAAAAATCTCATTTTT-ACCCCC
118019 AAACTTCCAAAAAT-TCCATTTTTACCCCC
1 AAACTTCCAAAAATCT-CATTTTTACCCCC
**
118048 AAACTTCCAAAAATCTCATTTTTTGACCCTA
1 AAACTTCCAAAAATCTCA-TTTTT-ACCCCC
* *
118079 AAACTTCTAAAAAT-TCCATTTTTACCCTC
1 AAACTTCCAAAAATCT-CATTTTTACCCCC
* * * *
118108 GAACTTCCAAAAATC-CAATTTTTGAGCTCG
1 AAACTTCCAAAAATCTC-ATTTTT-ACCCCC
*
118138 AAACTTCCAAAAAT-TCCATTTTTACCCTC
1 AAACTTCCAAAAATCT-CATTTTTACCCCC
* **
118167 GAACTTCCAAAAATCTCATTTTTAACCCTA
1 AAACTTCCAAAAATCTCATTTTT-ACCCCC
*
118197 AAACTTCCAAAAAAATC-CATTTTTACCCTC
1 AAACTTCC--AAAAATCTCATTTTTACCCCC
* *
118227 AAACTTCCTAAAATGCT-ATTTTTGACCCCA
1 AAACTTCCAAAAAT-CTCATTTTT-ACCCCC
* *
118257 AAACTTCAAAAAAT-TCCATTTTTAGCCCC
1 AAACTTCCAAAAATCT-CATTTTTACCCCC
* ** * *
118286 AAATTTGAAAAAAAT-TCCATTTTAACCCCA
1 AAACTT-CCAAAAATCT-CATTTTTACCCCC
** *
118316 AAACCTCTAAAAAAAATAC-CA-TTTTACCCCT
1 AAA-CT-T-CCAAAAAT-CTCATTTTTACCCCC
* *
118347 AAACTTCAAAAAATC-CTATTTTTGACCCCA
1 AAACTTCCAAAAATCTC-ATTTTT-ACCCCC
* *
118377 AAACTTCCAAAAAT-TCTATTTCTACCCCT
1 AAACTTCCAAAAATCTC-ATTTTTACCCCC
* * * *
118406 AAACTTCTAAAAATCCCATTTTTAGCCTC
1 AAACTTCCAAAAATCTCATTTTTACCCCC
* * **
118435 GAACTTCCAAAAATGC-CATTTTTTATCCTG
1 AAACTTCCAAAAAT-CTCA-TTTTTACCCCC
* *
118465 AAATTTCCAAAAAT-TCCATTTTCACCCCC
1 AAACTTCCAAAAATCT-CATTTTTACCCCC
118494 TAATGTCTAA
Statistics
Matches: 451, Mismatches: 73, Indels: 79
0.75 0.12 0.13
Matches are distributed among these distances:
27 2 0.00
28 36 0.08
29 152 0.34
30 204 0.45
31 39 0.09
32 18 0.04
ACGTcount: A:0.37, C:0.28, G:0.03, T:0.32
Consensus pattern (29 bp):
AAACTTCCAAAAATCTCATTTTTACCCCC
Found at i:118159 original size:59 final size:57
Alignment explanation
Indices: 117901--118526 Score: 553
Period size: 59 Copynumber: 10.5 Consensus size: 57
117891 GGAGGTCCCT
* * * *
117901 AAACTATCCAAAAATTCCATTTTTACCCCCGAACTTCCAAAAATCTCATTTTTAACACCG
1 AAACT-TCCAAAAATTCCATTTTTA-CCCCAAACTTCCAAAAATC-CATTTTTGACCCCA
** * *
117961 AAACTTATAAAAATTCCATTTTTACCCCAAACTTCAAAAAATCCCATTTTTGACCTCA
1 AAACTTCCAAAAATTCCATTTTTACCCCAAACTTCCAAAAAT-CCATTTTTGACCCCA
*
118019 AAACTTCCAAAAATTCCATTTTTACCCCCAAACTTCCAAAAATCTCATTTTTTGACCCTA
1 AAACTTCCAAAAATTCCATTTTTA-CCCCAAACTTCCAAAAATC-CA-TTTTTGACCCCA
* * * * *
118079 AAACTTCTAAAAATTCCATTTTTACCCTCGAACTTCCAAAAATCCAATTTTTGAGCTCG
1 AAACTTCCAAAAATTCCATTTTTACCC-CAAACTTCCAAAAATCC-ATTTTTGACCCCA
* * *
118138 AAACTTCCAAAAATTCCATTTTTACCCTCGAACTTCCAAAAATCTCATTTTTAACCCTA
1 AAACTTCCAAAAATTCCATTTTTACCC-CAAACTTCCAAAAATC-CATTTTTGACCCCA
* * *
118197 AAACTTCCAAAAAAATCCATTTTTACCCTCAAACTTCCTAAAATGCTATTTTTGACCCCA
1 AAACTTCC-AAAAATTCCATTTTTACCC-CAAACTTCCAAAAAT-CCATTTTTGACCCCA
* * ** *
118257 AAACTTCAAAAAATTCCATTTTTAGCCCCAAATTTGAAAAAAATTCCA-TTTTAACCCCA
1 AAACTTCCAAAAATTCCATTTTTA-CCCCAAACTT-CCAAAAA-TCCATTTTTGACCCCA
** * *
118316 AAACCTCTAAAAAAAATACCA-TTTTACCCCTAAACTTCAAAAAATCCTATTTTTGACCCCA
1 AAA-CT-T-CCAAAAATTCCATTTTTACCCC-AAACTTCCAAAAATCC-ATTTTTGACCCCA
* * * *
118377 AAACTTCCAAAAATTCTATTTCTACCCCTAAACTTCTAAAAATCCCATTTTT-AGCCTC-
1 AAACTTCCAAAAATTCCATTTTTACCCC-AAACTTCCAAAAAT-CCATTTTTGA-CCCCA
* * ** * * *
118435 GAACTTCCAAAAATGCCATTTTTTATCCTGAAATTTCCAAAAATTCCA-TTTTCACCCCC
1 AAACTTCCAAAAATTCCA-TTTTTA-CCCCAAACTTCCAAAAA-TCCATTTTTGACCCCA
* *
118494 TAA-TGTCTAAAAATTCCATTTTTAAACCCCAAA
1 AAACT-TCCAAAAATTCCATTTTT--ACCCCAAA
118527 ATTTCCCAAA
Statistics
Matches: 472, Mismatches: 65, Indels: 59
0.79 0.11 0.10
Matches are distributed among these distances:
58 86 0.18
59 215 0.46
60 135 0.29
61 26 0.06
62 10 0.02
ACGTcount: A:0.37, C:0.27, G:0.03, T:0.32
Consensus pattern (57 bp):
AAACTTCCAAAAATTCCATTTTTACCCCAAACTTCCAAAAATCCATTTTTGACCCCA
Found at i:118161 original size:119 final size:117
Alignment explanation
Indices: 117901--118457 Score: 638
Period size: 119 Copynumber: 4.7 Consensus size: 117
117891 GGAGGTCCCT
* *
117901 AAACTATCCAAAAATTCCATTTTTACCCCCGAACTTCCAAAAATCTCATTTTTAACACC-GAAAC
1 AAACT-TCCAAAAATTCCATTTTTACCCCCAAACTTCCAAAAATCTCATTTTTAAC-CCTAAAAC
* * *
117965 TTATAAAAATTCCATTTTTACCCCAAACTTCAAAAAATCCCATTTTTGACCTCA
64 TTCTAAAAATTCCATTTTTACCCCAAACTTCAAAAAATCCTATTTTTGACCCCA
*
118019 AAACTTCCAAAAATTCCATTTTTACCCCCAAACTTCCAAAAATCTCATTTTTTGACCCTAAAACT
1 AAACTTCCAAAAATTCCATTTTTACCCCCAAACTTCCAAAAATCTCA-TTTTTAACCCTAAAACT
* * * * * *
118084 TCTAAAAATTCCATTTTTACCCTCGAACTTCCAAAAATCCAATTTTTGAGCTCG
65 TCTAAAAATTCCATTTTTACCC-CAAACTTCAAAAAATCCTATTTTTGACCCCA
* *
118138 AAACTTCCAAAAATTCCATTTTTACCCTCGAACTTCCAAAAATCTCATTTTTAACCCTAAAACTT
1 AAACTTCCAAAAATTCCATTTTTACCCCCAAACTTCCAAAAATCTCATTTTTAACCCTAAAACTT
* * ** *
118203 CCAAAAAAATCCATTTTTACCCTCAAACTTCCTAAAATGCTATTTTTGACCCCA
66 -CTAAAAATTCCATTTTTACCC-CAAACTTCAAAAAATCCTATTTTTGACCCCA
* * * ** *
118257 AAACTTCAAAAAATTCCATTTTTAGCCCCAAATTTGAAAAAAAT-TCCA-TTTTAACCCCAAAAC
1 AAACTTCCAAAAATTCCATTTTTACCCCCAAACTT-CCAAAAATCT-CATTTTTAACCCTAAAAC
* *
118320 CTCTAAAAAAAATACCA-TTTTACCCCTAAACTTCAAAAAATCCTATTTTTGACCCCA
64 TTCT---AAAAATTCCATTTTTACCCC-AAACTTCAAAAAATCCTATTTTTGACCCCA
* * * * * * **
118377 AAACTTCCAAAAATTCTATTTCTACCCCTAAACTTCTAAAAATCCCATTTTT-AGCCTCGAACTT
1 AAACTTCCAAAAATTCCATTTTTACCCCCAAACTTCCAAAAATCTCATTTTTAACCCTAAAACTT
* *
118441 CCAAAAATGCCATTTTT
66 CTAAAAATTCCATTTTT
118458 TATCCTGAAA
Statistics
Matches: 374, Mismatches: 52, Indels: 27
0.83 0.11 0.06
Matches are distributed among these distances:
116 9 0.02
117 47 0.13
118 56 0.15
119 178 0.48
120 76 0.20
121 8 0.02
ACGTcount: A:0.37, C:0.27, G:0.03, T:0.32
Consensus pattern (117 bp):
AAACTTCCAAAAATTCCATTTTTACCCCCAAACTTCCAAAAATCTCATTTTTAACCCTAAAACTT
CTAAAAATTCCATTTTTACCCCAAACTTCAAAAAATCCTATTTTTGACCCCA
Found at i:118338 original size:32 final size:30
Alignment explanation
Indices: 118293--118359 Score: 89
Period size: 32 Copynumber: 2.2 Consensus size: 30
118283 CCCAAATTTG
*
118293 AAAAAAATTCCATTTTAACCCCAAAACCTCTA
1 AAAAAAATACCATTTT-ACCCCAAAACCTC-A
* *
118325 AAAAAAATACCATTTTACCCCTAAACTTCA
1 AAAAAAATACCATTTTACCCCAAAACCTCA
118355 AAAAA
1 AAAAA
118360 TCCTATTTTT
Statistics
Matches: 32, Mismatches: 3, Indels: 2
0.86 0.08 0.05
Matches are distributed among these distances:
30 6 0.19
31 11 0.34
32 15 0.47
ACGTcount: A:0.51, C:0.25, G:0.00, T:0.24
Consensus pattern (30 bp):
AAAAAAATACCATTTTACCCCAAAACCTCA
Found at i:125425 original size:20 final size:18
Alignment explanation
Indices: 125396--125459 Score: 74
Period size: 20 Copynumber: 3.4 Consensus size: 18
125386 AGGATGTGAC
125396 ATAAAAATTATTAAGAATT
1 ATAAAAATTATTAA-AATT
*
125415 ATAAGAAATTATAAATAATT
1 ATAA-AAATTATTAA-AATT
* *
125435 ATTAAAATTATTGAAATT
1 ATAAAAATTATTAAAATT
125453 ATAAAAA
1 ATAAAAA
125460 CTATATACAT
Statistics
Matches: 38, Mismatches: 6, Indels: 3
0.81 0.13 0.06
Matches are distributed among these distances:
18 10 0.26
19 12 0.32
20 16 0.42
ACGTcount: A:0.59, C:0.00, G:0.05, T:0.36
Consensus pattern (18 bp):
ATAAAAATTATTAAAATT
Found at i:125445 original size:9 final size:9
Alignment explanation
Indices: 125399--125458 Score: 59
Period size: 10 Copynumber: 6.4 Consensus size: 9
125389 ATGTGACATA
125399 AAAATTATT
1 AAAATTATT
*
125408 AAGAATTATA
1 AA-AATTATT
*
125418 AGAAATTATA
1 A-AAATTATT
125428 AATAATTATT
1 AA-AATTATT
125438 AAAATTATT
1 AAAATTATT
*
125447 GAAATTA-T
1 AAAATTATT
125455 AAAA
1 AAAA
125459 ACTATATACA
Statistics
Matches: 44, Mismatches: 4, Indels: 7
0.80 0.07 0.13
Matches are distributed among these distances:
8 4 0.09
9 16 0.36
10 23 0.52
11 1 0.02
ACGTcount: A:0.58, C:0.00, G:0.05, T:0.37
Consensus pattern (9 bp):
AAAATTATT
Found at i:125698 original size:10 final size:10
Alignment explanation
Indices: 125663--125710 Score: 53
Period size: 10 Copynumber: 4.7 Consensus size: 10
125653 AAAAAATATT
125663 TATAATTTAT-
1 TATAATTT-TC
*
125673 TATAATTGTTA
1 TATAATT-TTC
*
125684 AATAATTTTC
1 TATAATTTTC
125694 TATAATTTTC
1 TATAATTTTC
125704 TATAATT
1 TATAATT
125711 ATTTAATAAT
Statistics
Matches: 33, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
10 26 0.79
11 7 0.21
ACGTcount: A:0.38, C:0.04, G:0.02, T:0.56
Consensus pattern (10 bp):
TATAATTTTC
Found at i:125698 original size:31 final size:30
Alignment explanation
Indices: 125646--125726 Score: 83
Period size: 31 Copynumber: 2.6 Consensus size: 30
125636 TTAAATTTTA
* * *
125646 AATTTTTAAAAAATATTTATAATTTAT-TAT
1 AATTATTAAATAATTTTTATAATTT-TCTAT
*
125676 AATTGTTAAATAATTTTCTATAATTTTCTAT
1 AATTATTAAATAATTTT-TATAATTTTCTAT
*
125707 AATTATTTAATAATTATTTA
1 AATTATTAAATAATT-TTTA
125727 AGAAACTATT
Statistics
Matches: 43, Mismatches: 5, Indels: 5
0.81 0.09 0.09
Matches are distributed among these distances:
30 15 0.35
31 26 0.60
32 2 0.05
ACGTcount: A:0.42, C:0.02, G:0.01, T:0.54
Consensus pattern (30 bp):
AATTATTAAATAATTTTTATAATTTTCTAT
Found at i:125782 original size:31 final size:32
Alignment explanation
Indices: 125744--125809 Score: 91
Period size: 32 Copynumber: 2.1 Consensus size: 32
125734 ATTCCAAAAC
125744 GAATTTGGCA-AA-TGGTTATCCAAGCTCTTTT
1 GAATTTGG-ATAATTGGTTATCCAAGCTCTTTT
* *
125775 GAATTTGGATAATTGGTTGTCCAATCTCTTTT
1 GAATTTGGATAATTGGTTATCCAAGCTCTTTT
125807 GAA
1 GAA
125810 CCTAAACAAT
Statistics
Matches: 31, Mismatches: 2, Indels: 3
0.86 0.06 0.08
Matches are distributed among these distances:
30 1 0.03
31 10 0.32
32 20 0.65
ACGTcount: A:0.26, C:0.14, G:0.20, T:0.41
Consensus pattern (32 bp):
GAATTTGGATAATTGGTTATCCAAGCTCTTTT
Found at i:128209 original size:20 final size:20
Alignment explanation
Indices: 128169--128212 Score: 63
Period size: 20 Copynumber: 2.1 Consensus size: 20
128159 ACTTTCATGG
128169 TTAACTTAATTAATCTCCTAT
1 TTAACTTAATTAA-CTCCTAT
128190 TTAACCTTAATTAA-TCCTAT
1 TTAA-CTTAATTAACTCCTAT
128210 TTA
1 TTA
128213 TTATCAAAAT
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
20 9 0.41
21 4 0.18
22 9 0.41
ACGTcount: A:0.34, C:0.18, G:0.00, T:0.48
Consensus pattern (20 bp):
TTAACTTAATTAACTCCTAT
Found at i:137807 original size:20 final size:21
Alignment explanation
Indices: 137777--137824 Score: 62
Period size: 21 Copynumber: 2.3 Consensus size: 21
137767 TAGATACATA
*
137777 TATTCTTATATTTT-TTTAATT
1 TATT-TTATATTTTATATAATT
*
137798 TCTTTTATATTTTATATAATT
1 TATTTTATATTTTATATAATT
137819 TATTTT
1 TATTTT
137825 TAAATATTAA
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
20 9 0.39
21 14 0.61
ACGTcount: A:0.25, C:0.04, G:0.00, T:0.71
Consensus pattern (21 bp):
TATTTTATATTTTATATAATT
Found at i:139243 original size:29 final size:29
Alignment explanation
Indices: 139210--139281 Score: 85
Period size: 29 Copynumber: 2.5 Consensus size: 29
139200 TATAAAAATA
*
139210 ATACAGATACAGATATAGTC-ATGTCAGAG
1 ATACAGATACAGATATAGTCGA-ATCAGAG
* *
139239 ATACAGTTACAGATGTAGTCGAATCAGAG
1 ATACAGATACAGATATAGTCGAATCAGAG
139268 ATACA-ATTACAGAT
1 ATACAGA-TACAGAT
139282 GCAGTGCAGA
Statistics
Matches: 37, Mismatches: 4, Indels: 4
0.82 0.09 0.09
Matches are distributed among these distances:
29 36 0.97
30 1 0.03
ACGTcount: A:0.42, C:0.14, G:0.19, T:0.25
Consensus pattern (29 bp):
ATACAGATACAGATATAGTCGAATCAGAG
Found at i:139950 original size:53 final size:53
Alignment explanation
Indices: 139864--139989 Score: 144
Period size: 53 Copynumber: 2.4 Consensus size: 53
139854 TGTACCCACA
* * * * * *
139864 CCCATGTGTCAGCCCATGTTCCCTAAAACAGTATACACACACCTTGACATAGG
1 CCCATGTGTCAGCCCGTGTGCCCCAAAACAGTATACACACACCCTGACACACG
* ** *
139917 CCCATGTGTCAGCCCGTGTGCCCCAAAATAGTATACGTACACCCTGACACACT
1 CCCATGTGTCAGCCCGTGTGCCCCAAAACAGTATACACACACCCTGACACACG
* *
139970 CCCATGTGTTAGCCTGTGTG
1 CCCATGTGTCAGCCCGTGTG
139990 TCACACACGC
Statistics
Matches: 61, Mismatches: 12, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
53 61 1.00
ACGTcount: A:0.25, C:0.33, G:0.18, T:0.24
Consensus pattern (53 bp):
CCCATGTGTCAGCCCGTGTGCCCCAAAACAGTATACACACACCCTGACACACG
Found at i:142478 original size:19 final size:19
Alignment explanation
Indices: 142450--142496 Score: 67
Period size: 19 Copynumber: 2.5 Consensus size: 19
142440 AAGGAATAGC
*
142450 ATACTGGCTCATTTGAGCA
1 ATACTGGCTCATGTGAGCA
* *
142469 ATATTGGCTCGTGTGAGCA
1 ATACTGGCTCATGTGAGCA
142488 ATACTGGCT
1 ATACTGGCT
142497 AGTAAGAGCA
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
19 24 1.00
ACGTcount: A:0.23, C:0.19, G:0.26, T:0.32
Consensus pattern (19 bp):
ATACTGGCTCATGTGAGCA
Found at i:142505 original size:19 final size:19
Alignment explanation
Indices: 142464--142509 Score: 56
Period size: 19 Copynumber: 2.4 Consensus size: 19
142454 TGGCTCATTT
* * **
142464 GAGCAATATTGGCTCGTGT
1 GAGCAATACTGGCTAGTAA
142483 GAGCAATACTGGCTAGTAA
1 GAGCAATACTGGCTAGTAA
142502 GAGCAATA
1 GAGCAATA
142510 TACTGTACTT
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
19 23 1.00
ACGTcount: A:0.33, C:0.15, G:0.28, T:0.24
Consensus pattern (19 bp):
GAGCAATACTGGCTAGTAA
Found at i:146895 original size:91 final size:91
Alignment explanation
Indices: 146778--146959 Score: 364
Period size: 91 Copynumber: 2.0 Consensus size: 91
146768 GCCAATCCGA
146778 GCAGGTAATACATATTCTAGAAGACATGTTACGGTGTTGTATACTTGAATTCGAGGGTAGTTAGG
1 GCAGGTAATACATATTCTAGAAGACATGTTACGGTGTTGTATACTTGAATTCGAGGGTAGTTAGG
146843 AGAAATATTTACCATTGGTGGAGTTT
66 AGAAATATTTACCATTGGTGGAGTTT
146869 GCAGGTAATACATATTCTAGAAGACATGTTACGGTGTTGTATACTTGAATTCGAGGGTAGTTAGG
1 GCAGGTAATACATATTCTAGAAGACATGTTACGGTGTTGTATACTTGAATTCGAGGGTAGTTAGG
146934 AGAAATATTTACCATTGGTGGAGTTT
66 AGAAATATTTACCATTGGTGGAGTTT
146960 TCTTATAATA
Statistics
Matches: 91, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
91 91 1.00
ACGTcount: A:0.30, C:0.10, G:0.26, T:0.34
Consensus pattern (91 bp):
GCAGGTAATACATATTCTAGAAGACATGTTACGGTGTTGTATACTTGAATTCGAGGGTAGTTAGG
AGAAATATTTACCATTGGTGGAGTTT
Found at i:150150 original size:19 final size:19
Alignment explanation
Indices: 150126--150164 Score: 78
Period size: 19 Copynumber: 2.1 Consensus size: 19
150116 ACAAACAATG
150126 AGTTACACGGCCTGAGCAC
1 AGTTACACGGCCTGAGCAC
150145 AGTTACACGGCCTGAGCAC
1 AGTTACACGGCCTGAGCAC
150164 A
1 A
150165 CTCCCATGTG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.28, C:0.31, G:0.26, T:0.15
Consensus pattern (19 bp):
AGTTACACGGCCTGAGCAC
Found at i:150780 original size:155 final size:155
Alignment explanation
Indices: 150327--150780 Score: 692
Period size: 155 Copynumber: 2.9 Consensus size: 155
150317 GTGGATTTTC
*
150327 CACAGCTCGTGTGAGCATTACATGATACGGGTGCTGGTCTTGGATGTCCTACCAATGGTTGAGGT
1 CACAGCTCGTGTGAGCATTACATGATACGGGTGCTGGTCTTGGATGTCCTACCAATGGCTGAGGT
* * * *
150392 CCTGCGTTTGTTGCGGATTTTCCACAACTCGTGTGAGCAGCATCGTGTAGCTAACATCCCAACCC
66 CCTGCATTTGTTGCGGATTCTCCACAGCTCGTGTGAGCAGCATCGTGTAGCTAACATCCCGACCC
* * * *
150457 ATAGCTCGTGTGAACAGGCTCATTT
131 ACAACTCGTGTGAGCAGGCCCATTT
* * * *
150482 CACAGCTCGTGTGAGCATTACATGATATGGGTGCTGGTCTTAGATGTCCTATCTATGGCTGAGGT
1 CACAGCTCGTGTGAGCATTACATGATACGGGTGCTGGTCTTGGATGTCCTACCAATGGCTGAGGT
**
150547 CCTGCATTTGTTATGGATTCTCCACAGCTCGTGTGAGCAGCATCGTGTAGCTAACATCCCGACCC
66 CCTGCATTTGTTGCGGATTCTCCACAGCTCGTGTGAGCAGCATCGTGTAGCTAACATCCCGACCC
150612 ACAACTCGTGTGAGCAGGCCCATTT
131 ACAACTCGTGTGAGCAGGCCCATTT
* * *
150637 CACAGCTCGTGTGAGCATTACATGATACGGGTGCTGGTCTTGGATGTCTTACCAATAGCTAAGGT
1 CACAGCTCGTGTGAGCATTACATGATACGGGTGCTGGTCTTGGATGTCCTACCAATGGCTGAGGT
* * * * **
150702 CTTGCATTCGTTGCGGATTCTCCACAGCTCGTGTAAGCAGCATCGTGTAACTAACATTTCGACCC
66 CCTGCATTTGTTGCGGATTCTCCACAGCTCGTGTGAGCAGCATCGTGTAGCTAACATCCCGACCC
150767 ACAACTCGTGTGAG
131 ACAACTCGTGTGAG
150781 AATACATGAT
Statistics
Matches: 269, Mismatches: 30, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
155 269 1.00
ACGTcount: A:0.21, C:0.25, G:0.25, T:0.29
Consensus pattern (155 bp):
CACAGCTCGTGTGAGCATTACATGATACGGGTGCTGGTCTTGGATGTCCTACCAATGGCTGAGGT
CCTGCATTTGTTGCGGATTCTCCACAGCTCGTGTGAGCAGCATCGTGTAGCTAACATCCCGACCC
ACAACTCGTGTGAGCAGGCCCATTT
Found at i:154047 original size:30 final size:29
Alignment explanation
Indices: 154024--154081 Score: 89
Period size: 29 Copynumber: 2.0 Consensus size: 29
154014 AAATTGGATC
* *
154024 AAATCAAAATTTTATGTATAAAATTACACA
1 AAATC-AAAGTTTATGTATAAAATTGCACA
154054 AAATCAAAGTTTATGTATAAAATTGCAC
1 AAATCAAAGTTTATGTATAAAATTGCAC
154082 GTTAAACCGT
Statistics
Matches: 26, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
29 21 0.81
30 5 0.19
ACGTcount: A:0.50, C:0.10, G:0.07, T:0.33
Consensus pattern (29 bp):
AAATCAAAGTTTATGTATAAAATTGCACA
Found at i:155955 original size:16 final size:16
Alignment explanation
Indices: 155934--155972 Score: 69
Period size: 16 Copynumber: 2.4 Consensus size: 16
155924 TAAACAAACG
*
155934 TTGAACGAACAGTTCA
1 TTGAACGAACAATTCA
155950 TTGAACGAACAATTCA
1 TTGAACGAACAATTCA
155966 TTGAACG
1 TTGAACG
155973 TTCTGTTCAT
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
16 22 1.00
ACGTcount: A:0.38, C:0.18, G:0.18, T:0.26
Consensus pattern (16 bp):
TTGAACGAACAATTCA
Found at i:163022 original size:30 final size:30
Alignment explanation
Indices: 162968--163048 Score: 101
Period size: 30 Copynumber: 2.7 Consensus size: 30
162958 AAACTTTTTT
***
162968 AAAATTGCATTTGGCCCCCAAAACT-TATCC
1 AAAATTGCATTTTAACCCCAAAACTCT-TCC
*
162998 AAAATTGCATTTTAACCCCTAAACTCTTCC
1 AAAATTGCATTTTAACCCCAAAACTCTTCC
*
163028 AAAATTACATTTTAACCCCAA
1 AAAATTGCATTTTAACCCCAA
163049 GTTCTCCTAA
Statistics
Matches: 44, Mismatches: 6, Indels: 2
0.85 0.12 0.04
Matches are distributed among these distances:
30 43 0.98
31 1 0.02
ACGTcount: A:0.37, C:0.28, G:0.05, T:0.30
Consensus pattern (30 bp):
AAAATTGCATTTTAACCCCAAAACTCTTCC
Found at i:166766 original size:21 final size:22
Alignment explanation
Indices: 166740--166787 Score: 64
Period size: 22 Copynumber: 2.2 Consensus size: 22
166730 TAGACAGATG
166740 GAGGAAAAG-TAT-AAGCGATTA
1 GAGGAAAAGAT-TGAAGCGATTA
*
166761 GAGGAAAAGATTGAGGCGATTA
1 GAGGAAAAGATTGAAGCGATTA
166783 GAGGA
1 GAGGA
166788 GCTAAAAACT
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
21 10 0.42
22 14 0.58
ACGTcount: A:0.44, C:0.04, G:0.35, T:0.17
Consensus pattern (22 bp):
GAGGAAAAGATTGAAGCGATTA
Found at i:171029 original size:25 final size:26
Alignment explanation
Indices: 171001--171052 Score: 88
Period size: 25 Copynumber: 2.0 Consensus size: 26
170991 ATCCTATACT
171001 TAGTGGTCTTTGAAAATTCTAT-GGA
1 TAGTGGTCTTTGAAAATTCTATAGGA
*
171026 TAGTGGTCTTTGAAATTTCTATAGGA
1 TAGTGGTCTTTGAAAATTCTATAGGA
171052 T
1 T
171053 GCATACTAGG
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
25 21 0.84
26 4 0.16
ACGTcount: A:0.27, C:0.08, G:0.23, T:0.42
Consensus pattern (26 bp):
TAGTGGTCTTTGAAAATTCTATAGGA
Found at i:175866 original size:30 final size:29
Alignment explanation
Indices: 175847--175982 Score: 78
Period size: 30 Copynumber: 4.6 Consensus size: 29
175837 ATTTTCTTTA
175847 AAAATTACATTTTGACCCTTAAACTTTTTT
1 AAAATTACATTTTGACCCTT-AACTTTTTT
* * * **
175877 AAAATTACATTTT-AACC-TAAATGTCTCC
1 AAAATTACATTTTGACCCTTAACT-TTTTT
* * * **
175905 AAAATTACATTTTGATCTCTAAACTTCTCC
1 AAAATTACATTTTGA-CCCTTAACTTTTTT
* * * **
175935 AAAATTACATTTTTGCCCCTAAACTCTTCC
1 AAAATTACA-TTTTGACCCTTAACTTTTTT
*
175965 AAAATTACATTTTAACCC
1 AAAATTACATTTTGACCC
175983 CAAGTTCTCC
Statistics
Matches: 86, Mismatches: 15, Indels: 11
0.77 0.13 0.10
Matches are distributed among these distances:
27 3 0.03
28 16 0.19
29 11 0.13
30 48 0.56
31 8 0.09
ACGTcount: A:0.35, C:0.23, G:0.03, T:0.39
Consensus pattern (29 bp):
AAAATTACATTTTGACCCTTAACTTTTTT
Found at i:175911 original size:58 final size:61
Alignment explanation
Indices: 175847--175982 Score: 156
Period size: 58 Copynumber: 2.3 Consensus size: 61
175837 ATTTTCTTTA
* ** *
175847 AAAATTACATTTTGACCCT-TAAACTTTTTTAAAATTACA-TTTT-AACCTAAA-TGTCTCC
1 AAAATTACATTTTGACCCTCTAAACTTCTCCAAAATTACATTTTTGAACCTAAACTCT-TCC
* **
175905 AAAATTACATTTTGA-TCTCTAAACTTCTCCAAAATTACATTTTTGCCCCTAAACTCTTCC
1 AAAATTACATTTTGACCCTCTAAACTTCTCCAAAATTACATTTTTGAACCTAAACTCTTCC
*
175965 AAAATTACATTTTAACCC
1 AAAATTACATTTTGACCC
175983 CAAGTTCTCC
Statistics
Matches: 64, Mismatches: 9, Indels: 7
0.80 0.11 0.09
Matches are distributed among these distances:
57 2 0.03
58 32 0.50
59 4 0.06
60 23 0.36
61 3 0.05
ACGTcount: A:0.35, C:0.23, G:0.03, T:0.39
Consensus pattern (61 bp):
AAAATTACATTTTGACCCTCTAAACTTCTCCAAAATTACATTTTTGAACCTAAACTCTTCC
Found at i:182908 original size:46 final size:46
Alignment explanation
Indices: 182823--182910 Score: 106
Period size: 46 Copynumber: 1.9 Consensus size: 46
182813 AAGGGAAATA
** *
182823 AAAACCTAATATAATAGGGAGAATAAGTAAAACTAAAACTCTTAAT
1 AAAACCTAATATAATAAAGAGAATAAATAAAACTAAAACTCTTAAT
* * *
182869 AAAACCTAATATAATAAATA-AATTAAATAAATCTTAAACTCT
1 AAAACCTAATATAATAAAGAGAA-TAAATAAAACTAAAACTCT
182911 AATTGAAATA
Statistics
Matches: 35, Mismatches: 6, Indels: 2
0.81 0.14 0.05
Matches are distributed among these distances:
45 2 0.06
46 33 0.94
ACGTcount: A:0.56, C:0.11, G:0.06, T:0.27
Consensus pattern (46 bp):
AAAACCTAATATAATAAAGAGAATAAATAAAACTAAAACTCTTAAT
Found at i:183814 original size:197 final size:198
Alignment explanation
Indices: 183472--183860 Score: 636
Period size: 197 Copynumber: 2.0 Consensus size: 198
183462 ACAGTCCTAA
* * * *
183472 CCAATAGTGATTGAAATTGGCGTTGATATTCCTCTACCGTCCCAGTTTGTCTCAGGTTGGCAAGT
1 CCAATAATGATTGAAATTGGCGTTGATATTCCTCTACAGCCCCAATTTGTCTCAGGTTGGCAAGT
* * * *
183537 TCACCCAAGGGGTTATTACTCATAGATGGCCCAAATCTTACATGACAACACTCTTTGAAGTGCCC
66 TCACCCAAAGGGTTATTACTAATAGATGGCCCAAACCTTACATGACAACACTCTTTGAAGCGCCC
*
183602 CCAATCAAGATTTGCCTCCTCTTCTTCCATTTGATCAAACCAAAATTGT-CTCTCCTAATAGATG
131 CCAATCAAGATTTGCCTCCTCTTCTTCCACTTGATCAAACCAAAATTGTCCTCTCCTAATAGATG
183666 GAG
196 GAG
183669 CCAATAATGATTGAAATTGGCGTTGATATTCCTCTACAGCCCCAATTTGTCTCAGGTTGGCAAGT
1 CCAATAATGATTGAAATTGGCGTTGATATTCCTCTACAGCCCCAATTTGTCTCAGGTTGGCAAGT
* * *
183734 TCCCCCAAAGGGTTATTACTAATTGGTGGCCCAAACCTTACATGACAACACTCTTTGAAGCGCCC
66 TCACCCAAAGGGTTATTACTAATAGATGGCCCAAACCTTACATGACAACACTCTTTGAAGCGCCC
* *
183799 CCAATCAAGATTTGCCTCCTTTTCTTCCACTTGATCAAACCACAATTGTGCCTCTCCTAATA
131 CCAATCAAGATTTGCCTCCTCTTCTTCCACTTGATCAAACCAAAATTGT-CCTCTCCTAATA
183861 AATAGAATGA
Statistics
Matches: 176, Mismatches: 14, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
197 165 0.94
199 11 0.06
ACGTcount: A:0.26, C:0.27, G:0.16, T:0.31
Consensus pattern (198 bp):
CCAATAATGATTGAAATTGGCGTTGATATTCCTCTACAGCCCCAATTTGTCTCAGGTTGGCAAGT
TCACCCAAAGGGTTATTACTAATAGATGGCCCAAACCTTACATGACAACACTCTTTGAAGCGCCC
CCAATCAAGATTTGCCTCCTCTTCTTCCACTTGATCAAACCAAAATTGTCCTCTCCTAATAGATG
GAG
Found at i:190977 original size:22 final size:22
Alignment explanation
Indices: 190950--191003 Score: 74
Period size: 22 Copynumber: 2.5 Consensus size: 22
190940 ATTAATATAG
*
190950 ATTAAATCGATGT-GATAAATAT
1 ATTAAATCGAT-TCGATAAAGAT
190972 ATTAAATCGATTCGATAAAGAT
1 ATTAAATCGATTCGATAAAGAT
*
190994 ATTAGATCGA
1 ATTAAATCGA
191004 ATCAAAAATT
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
21 1 0.03
22 28 0.97
ACGTcount: A:0.44, C:0.07, G:0.15, T:0.33
Consensus pattern (22 bp):
ATTAAATCGATTCGATAAAGAT
Found at i:191142 original size:2 final size:2
Alignment explanation
Indices: 191135--191169 Score: 70
Period size: 2 Copynumber: 17.5 Consensus size: 2
191125 CCTCCTTATT
191135 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
191170 GAGATGCTAA
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 33 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:197777 original size:29 final size:29
Alignment explanation
Indices: 197738--197938 Score: 185
Period size: 29 Copynumber: 7.0 Consensus size: 29
197728 ATGACCATGC
* *
197738 ACCACT-GTTTTACAAATTTTATAGTTTT
1 ACCACTAGTTTTCCAAATTTTACAGTTTT
* * * * *
197766 GCCATTATTTTTCAAAATTTTACACTTTT
1 ACCACTAGTTTTCCAAATTTTACAGTTTT
* *
197795 ACAACTAGTTTTCCAGATTTTACAGTTTT
1 ACCACTAGTTTTCCAAATTTTACAGTTTT
* *
197824 ACCACTAGTTTTCCAAATTTTATAGTTCT
1 ACCACTAGTTTTCCAAATTTTACAGTTTT
*
197853 ACCACTA-TTTTCCAAATTTTACAATTTT
1 ACCACTAGTTTTCCAAATTTTACAGTTTT
* * * *
197881 ACCA-TTGATTTTCAAAAATTTT-CAATTCT
1 ACCACTAG-TTTTC-CAAATTTTACAGTTTT
* * *
197910 ACCACTAATTTTCCACATTTTACAATTTT
1 ACCACTAGTTTTCCAAATTTTACAGTTTT
197939 GTCACTATTC
Statistics
Matches: 138, Mismatches: 29, Indels: 11
0.78 0.16 0.06
Matches are distributed among these distances:
27 1 0.01
28 32 0.23
29 97 0.70
30 8 0.06
ACGTcount: A:0.30, C:0.19, G:0.04, T:0.47
Consensus pattern (29 bp):
ACCACTAGTTTTCCAAATTTTACAGTTTT
Found at i:197893 original size:86 final size:87
Alignment explanation
Indices: 197738--197931 Score: 216
Period size: 86 Copynumber: 2.3 Consensus size: 87
197728 ATGACCATGC
* * * * *
197738 ACCACT-GTTTTACAAATTTTATAGTTTTGCCATTATTTTTCAAAATTTTACACTTTTACAACTA
1 ACCACTAGTTTTCCAAATTTTATAGTTCTACCACTATTTTTCAAAATTTTACAATTTTACAACTA
* * * *
197802 GTTTTC-CAGATTTTACAGTTTT
66 GTTTTCAAAAATTTT-CAATTCT
* * *
197824 ACCACTAGTTTTCCAAATTTTATAGTTCTACCACTA-TTTTCCAAATTTTACAATTTTACCA-TT
1 ACCACTAGTTTTCCAAATTTTATAGTTCTACCACTATTTTTCAAAATTTTACAATTTTACAACTA
197887 GATTTTCAAAAATTTTCAATTCT
66 G-TTTTCAAAAATTTTCAATTCT
* *
197910 ACCACTAATTTTCCACATTTTA
1 ACCACTAGTTTTCCAAATTTTA
197932 CAATTTTGTC
Statistics
Matches: 91, Mismatches: 14, Indels: 6
0.82 0.13 0.05
Matches are distributed among these distances:
85 2 0.02
86 58 0.64
87 31 0.34
ACGTcount: A:0.30, C:0.19, G:0.05, T:0.46
Consensus pattern (87 bp):
ACCACTAGTTTTCCAAATTTTATAGTTCTACCACTATTTTTCAAAATTTTACAATTTTACAACTA
GTTTTCAAAAATTTTCAATTCT
Found at i:199078 original size:127 final size:126
Alignment explanation
Indices: 198747--199078 Score: 405
Period size: 127 Copynumber: 2.6 Consensus size: 126
198737 TATATGTTCA
* * * * *
198747 TTGTATATTCACAGTTTAGCAAATTCCAACTACGACTTTATAAACGGAGTATCCACGACTTCCTT
1 TTGTGTATTCACAGCTTAGCAGATTCCAACTGCGACTTTATAAACGGAGTATCCACGACTTTC-T
* * *
198812 TGACAGCTTTTGTTTACGAGGGATTGTAAATCCTCAACCATACGACAACTTGTTTGCACCCT
65 TGACAGCTTTTATCTACGAGGGATTGTAAATCCTCAACCATACGACAACTTGTCTGCACCCT
* * * * *
198874 CTGTGTATTCACAACTTAGCAGATTCTAACTGCGACTTTATAAATGGAGTATCCATGACTTTCTC
1 TTGTGTATTCACAGCTTAGCAGATTCCAACTGCGACTTTATAAACGGAGTATCCACGACTTTCT-
* * * * * * *
198939 TAACAACCTTTATCTGCGAAGGG-TTGTAGATCCTCAACCATACGTCAGCTTGTCTGCACCCT
65 TGACAGCTTTTATCTACG-AGGGATTGTAAATCCTCAACCATACGACAACTTGTCTGCACCCT
* * * *
199001 TTGTGTATTCACAGCTTAGCAGATTCCAACTGTGACTTTATGAACGGAGCATCCACGATTTTCGT
1 TTGTGTATTCACAGCTTAGCAGATTCCAACTGCGACTTTATAAACGGAGTATCCACGACTTTC-T
199066 TGACAGCTTTTAT
65 TGACAGCTTTTAT
199079 ATATGAGAAA
Statistics
Matches: 170, Mismatches: 32, Indels: 6
0.82 0.15 0.03
Matches are distributed among these distances:
126 1 0.01
127 164 0.96
128 5 0.03
ACGTcount: A:0.27, C:0.23, G:0.17, T:0.33
Consensus pattern (126 bp):
TTGTGTATTCACAGCTTAGCAGATTCCAACTGCGACTTTATAAACGGAGTATCCACGACTTTCTT
GACAGCTTTTATCTACGAGGGATTGTAAATCCTCAACCATACGACAACTTGTCTGCACCCT
Found at i:199098 original size:127 final size:125
Alignment explanation
Indices: 198747--199120 Score: 390
Period size: 127 Copynumber: 2.9 Consensus size: 125
198737 TATATGTTCA
* * * * *
198747 TTGTATATTCACAGTTTAGCAAATTCCAACTACGACTTTATAAACGGAGTATCCACGACTTCCTT
1 TTGTGTATTCACAGCTTAGCAGATTCCAACTGCGACTTTATAAACGGAGTATCCACGACTTTC-T
* * ** * * *
198812 TGACAGCTTTTGTTTACGAGGGATTGTAAATCCTCAACCATACGACAACTTGTTTGCACCCT
65 TGACAGCTTTT-TATATGAGAAATTGTAGATCCTCAACCATACGACAGCTTGTCTGCACCCT
* * * * *
198874 CTGTGTATTCACAACTTAGCAGATTCTAACTGCGACTTTATAAATGGAGTATCCATGACTTTCTC
1 TTGTGTATTCACAGCTTAGCAGATTCCAACTGCGACTTTATAAACGGAGTATCCACGACTTTCT-
* * * * * * *
198939 TAACAAC-CTTTATCTGCGAAGGGTTGTAGATCCTCAACCATACGTCAGCTTGTCTGCACCCT
65 TGACAGCTTTTTATATGAGAA--ATTGTAGATCCTCAACCATACGACAGCTTGTCTGCACCCT
* * * *
199001 TTGTGTATTCACAGCTTAGCAGATTCCAACTGTGACTTTATGAACGGAGCATCCACGATTTTCGT
1 TTGTGTATTCACAGCTTAGCAGATTCCAACTGCGACTTTATAAACGGAGTATCCACGACTTTC-T
* * * *
199066 TGACAGCTTTTATATATGAGAAATTATGGATCCTCAACCAAACGAAAGCTTGTCT
65 TGACAGCTTTT-TATATGAGAAATTGTAGATCCTCAACCATACGACAGCTTGTCT
199121 ACACTTAAAT
Statistics
Matches: 197, Mismatches: 44, Indels: 12
0.78 0.17 0.05
Matches are distributed among these distances:
125 4 0.02
126 3 0.02
127 179 0.91
128 3 0.02
129 8 0.04
ACGTcount: A:0.28, C:0.23, G:0.17, T:0.33
Consensus pattern (125 bp):
TTGTGTATTCACAGCTTAGCAGATTCCAACTGCGACTTTATAAACGGAGTATCCACGACTTTCTT
GACAGCTTTTTATATGAGAAATTGTAGATCCTCAACCATACGACAGCTTGTCTGCACCCT
Found at i:212497 original size:36 final size:36
Alignment explanation
Indices: 212450--212524 Score: 132
Period size: 36 Copynumber: 2.1 Consensus size: 36
212440 ATTTTGTAAC
*
212450 TTGTGTTATCGCCAAAGGTGTTGTTCGCCAAGTTCA
1 TTGTGTTATCGCCAAAGGTATTGTTCGCCAAGTTCA
*
212486 TTGTGTTATCGCCAAAGGTATTGTTCGCCAAGTTGA
1 TTGTGTTATCGCCAAAGGTATTGTTCGCCAAGTTCA
212522 TTG
1 TTG
212525 ACTGTGCTAG
Statistics
Matches: 37, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
36 37 1.00
ACGTcount: A:0.20, C:0.17, G:0.25, T:0.37
Consensus pattern (36 bp):
TTGTGTTATCGCCAAAGGTATTGTTCGCCAAGTTCA
Found at i:212508 original size:20 final size:20
Alignment explanation
Indices: 212450--212509 Score: 58
Period size: 20 Copynumber: 3.2 Consensus size: 20
212440 ATTTTGTAAC
212450 TTGTGTTATCGCCAAAGGT-
1 TTGTGTTATCGCCAAAGGTA
* *
212469 GT-TG-T-TCGCC-AAGTTCA
1 TTGTGTTATCGCCAAAGGT-A
212486 TTGTGTTATCGCCAAAGGTA
1 TTGTGTTATCGCCAAAGGTA
212506 TTGT
1 TTGT
212510 TCGCCAAGTT
Statistics
Matches: 31, Mismatches: 4, Indels: 11
0.67 0.09 0.24
Matches are distributed among these distances:
15 4 0.13
16 5 0.16
17 2 0.06
18 4 0.13
19 2 0.06
20 10 0.32
21 4 0.13
ACGTcount: A:0.20, C:0.17, G:0.25, T:0.38
Consensus pattern (20 bp):
TTGTGTTATCGCCAAAGGTA
Found at i:212510 original size:18 final size:18
Alignment explanation
Indices: 212453--212510 Score: 50
Period size: 18 Copynumber: 3.2 Consensus size: 18
212443 TTGTAACTTG
*
212453 TGTTATCGCCAAAGGTGT
1 TGTTATCGCCAAAGGTAT
*
212471 TG-T-TCGCC-AAGTTCATT
1 TGTTATCGCCAAAGGT-A-T
212488 GTGTTATCGCCAAAGGTAT
1 -TGTTATCGCCAAAGGTAT
212507 TGTT
1 TGTT
212511 CGCCAAGTTG
Statistics
Matches: 31, Mismatches: 3, Indels: 12
0.67 0.07 0.26
Matches are distributed among these distances:
15 4 0.13
16 5 0.16
17 2 0.06
18 8 0.26
19 2 0.06
20 6 0.19
21 4 0.13
ACGTcount: A:0.21, C:0.17, G:0.24, T:0.38
Consensus pattern (18 bp):
TGTTATCGCCAAAGGTAT
Found at i:215011 original size:15 final size:15
Alignment explanation
Indices: 214973--215015 Score: 52
Period size: 15 Copynumber: 2.9 Consensus size: 15
214963 TTAGCAGTTT
* *
214973 TTTTCTTTTT-TTCT
1 TTTTCTTTTTCCTCA
214987 TTTTCATTTTTCCTCA
1 TTTTC-TTTTTCCTCA
215003 TTTTCTTTTTCCT
1 TTTTCTTTTTCCT
215016 ACCCTAGCTA
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
14 5 0.20
15 13 0.52
16 7 0.28
ACGTcount: A:0.05, C:0.21, G:0.00, T:0.74
Consensus pattern (15 bp):
TTTTCTTTTTCCTCA
Found at i:215880 original size:51 final size:52
Alignment explanation
Indices: 215803--215913 Score: 161
Period size: 51 Copynumber: 2.2 Consensus size: 52
215793 TTTAGCAGAG
* * * *
215803 AAAAGAAGATAAAACGAAATTGGGAAGAATAAAGGTCATCGAGAAAAAGAAA
1 AAAAAAAGATAAAACGAAATTAGGAAGAAGAAAGGTCACCGAGAAAAAGAAA
*
215855 AAAAAAAGA-AAAAGGAAATTAGGAAGAAGAAAGGTCACCGAGAAAAAGAAA
1 AAAAAAAGATAAAACGAAATTAGGAAGAAGAAAGGTCACCGAGAAAAAGAAA
*
215906 GAAAAAAG
1 AAAAAAAG
215914 GAAATAGTTT
Statistics
Matches: 53, Mismatches: 6, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
51 45 0.85
52 8 0.15
ACGTcount: A:0.63, C:0.05, G:0.23, T:0.08
Consensus pattern (52 bp):
AAAAAAAGATAAAACGAAATTAGGAAGAAGAAAGGTCACCGAGAAAAAGAAA
Found at i:219503 original size:20 final size:19
Alignment explanation
Indices: 219466--219504 Score: 51
Period size: 19 Copynumber: 2.0 Consensus size: 19
219456 TTAAGAATGC
* *
219466 TTGTTTTAAAAGTGTTTTT
1 TTGTTTTAAAAATATTTTT
219485 TTGTTTTAAAAATAATTTTT
1 TTGTTTTAAAAAT-ATTTTT
219505 AGGAACAATA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
19 12 0.71
20 5 0.29
ACGTcount: A:0.28, C:0.00, G:0.10, T:0.62
Consensus pattern (19 bp):
TTGTTTTAAAAATATTTTT
Found at i:220186 original size:93 final size:93
Alignment explanation
Indices: 220031--220218 Score: 340
Period size: 93 Copynumber: 2.0 Consensus size: 93
220021 TAATTGACAA
* ***
220031 ATCAGTCATCTTGATTTTATTTCAGTCACTCAATTTTGAAAAAGTGACAAAAAATTTTTTTTTGT
1 ATCAGTCATCTTGATTTTATTTCAGTCACTCAATTTTGAAAAAGTAACAAAAAAAACTTTTTTGT
220096 CATTTTTCATCACAGACGGAACAGAGAC
66 CATTTTTCATCACAGACGGAACAGAGAC
220124 ATCAGTCATCTTGATTTTATTTCAGTCACTCAATTTTGAAAAAGTAACAAAAAAAACTTTTTTGT
1 ATCAGTCATCTTGATTTTATTTCAGTCACTCAATTTTGAAAAAGTAACAAAAAAAACTTTTTTGT
220189 CATTTTTCATCACAGACGGAACAGAGAC
66 CATTTTTCATCACAGACGGAACAGAGAC
220217 AT
1 AT
220219 GACATATGAC
Statistics
Matches: 91, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 91 1.00
ACGTcount: A:0.35, C:0.16, G:0.12, T:0.36
Consensus pattern (93 bp):
ATCAGTCATCTTGATTTTATTTCAGTCACTCAATTTTGAAAAAGTAACAAAAAAAACTTTTTTGT
CATTTTTCATCACAGACGGAACAGAGAC
Found at i:220341 original size:24 final size:23
Alignment explanation
Indices: 220309--220366 Score: 66
Period size: 24 Copynumber: 2.6 Consensus size: 23
220299 TTTAGGGTTT
220309 AAGAAGAGAAAAAGAAAAAAGAAG
1 AAGAAGAGAAAAAGAAAAAA-AAG
* * *
220333 AAGAGGAGAAGAAGAAGAAAAAG
1 AAGAAGAGAAAAAGAAAAAAAAG
220356 AA-AAGA-AAAAA
1 AAGAAGAGAAAAA
220367 TTGAAATGTC
Statistics
Matches: 29, Mismatches: 5, Indels: 3
0.78 0.14 0.08
Matches are distributed among these distances:
21 4 0.14
22 3 0.10
23 5 0.17
24 17 0.59
ACGTcount: A:0.74, C:0.00, G:0.26, T:0.00
Consensus pattern (23 bp):
AAGAAGAGAAAAAGAAAAAAAAG
Found at i:220361 original size:11 final size:11
Alignment explanation
Indices: 220309--220365 Score: 53
Period size: 11 Copynumber: 5.2 Consensus size: 11
220299 TTTAGGGTTT
*
220309 AAGAAGAGAAA
1 AAGAAAAGAAA
*
220320 AAGAAAA-AAG
1 AAGAAAAGAAA
* * *
220330 AAGAAGAGGAG
1 AAGAAAAGAAA
220341 AAGAAGAAGAAA
1 AAGAA-AAGAAA
220353 AAGAAAAGAAA
1 AAGAAAAGAAA
220364 AA
1 AA
220366 ATTGAAATGT
Statistics
Matches: 37, Mismatches: 7, Indels: 4
0.77 0.15 0.08
Matches are distributed among these distances:
10 8 0.22
11 21 0.57
12 8 0.22
ACGTcount: A:0.74, C:0.00, G:0.26, T:0.00
Consensus pattern (11 bp):
AAGAAAAGAAA
Found at i:234875 original size:14 final size:14
Alignment explanation
Indices: 234828--234876 Score: 62
Period size: 14 Copynumber: 3.4 Consensus size: 14
234818 ATATGATGTG
*
234828 TTTTAAAAAAATAA
1 TTTTGAAAAAATAA
* *
234842 TTTTGAAACAATGGA
1 TTTTGAAAAAAT-AA
234857 TTTTGAAAAAATAA
1 TTTTGAAAAAATAA
234871 TTTTGA
1 TTTTGA
234877 GAAGATGGTG
Statistics
Matches: 29, Mismatches: 5, Indels: 2
0.81 0.14 0.06
Matches are distributed among these distances:
14 17 0.59
15 12 0.41
ACGTcount: A:0.49, C:0.02, G:0.10, T:0.39
Consensus pattern (14 bp):
TTTTGAAAAAATAA
Found at i:236557 original size:13 final size:11
Alignment explanation
Indices: 236530--236572 Score: 52
Period size: 11 Copynumber: 3.8 Consensus size: 11
236520 AGTTAAATAT
236530 TATTTTATTAA
1 TATTTTATTAA
236541 TATTTTACTTAA
1 TATTTTA-TTAA
*
236553 -ATATTTATTAT
1 TAT-TTTATTAA
236564 TATTTTATT
1 TATTTTATT
236573 TAGAAAATGA
Statistics
Matches: 28, Mismatches: 1, Indels: 6
0.80 0.03 0.17
Matches are distributed among these distances:
11 18 0.64
12 10 0.36
ACGTcount: A:0.33, C:0.02, G:0.00, T:0.65
Consensus pattern (11 bp):
TATTTTATTAA
Found at i:237979 original size:107 final size:107
Alignment explanation
Indices: 237791--237998 Score: 353
Period size: 107 Copynumber: 1.9 Consensus size: 107
237781 ACAATTTGTC
*
237791 TTATGATATCAACATGGATGCAATTCCTGAACTTGGAAAGTGTGCAAGGAGCTAAGAGTCTAGAA
1 TTATGATATCAACATGGATGCAATTCCTGAACTTGGAAAGTGTGCAAGGAGCCAAGAGTCTAGAA
* * *
237856 CACGACGGTGTGGAGCATAATTCCCGAAGTTTGAACAACTGT
66 CACGACGGTCTCGAGCATAATTCCCAAAGTTTGAACAACTGT
*
237898 TTATGATATCAACATGGATGCAATTCCTGAACTTGGAAAGTGTTCAAGGAGCCAAGAGTCTAGAA
1 TTATGATATCAACATGGATGCAATTCCTGAACTTGGAAAGTGTGCAAGGAGCCAAGAGTCTAGAA
* *
237963 CACGACTGTCTCGAGCATAGTTCCCAAAGTTTGAAC
66 CACGACGGTCTCGAGCATAATTCCCAAAGTTTGAAC
237999 TATGTTCGAG
Statistics
Matches: 94, Mismatches: 7, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
107 94 1.00
ACGTcount: A:0.33, C:0.18, G:0.24, T:0.25
Consensus pattern (107 bp):
TTATGATATCAACATGGATGCAATTCCTGAACTTGGAAAGTGTGCAAGGAGCCAAGAGTCTAGAA
CACGACGGTCTCGAGCATAATTCCCAAAGTTTGAACAACTGT
Found at i:238573 original size:17 final size:17
Alignment explanation
Indices: 238551--238591 Score: 73
Period size: 17 Copynumber: 2.4 Consensus size: 17
238541 TTATGAAGAT
238551 TGGCTATAGAGTAATAA
1 TGGCTATAGAGTAATAA
238568 TGGCTATAGAGTAATAA
1 TGGCTATAGAGTAATAA
*
238585 TGTCTAT
1 TGGCTAT
238592 TTAGCCCACG
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
17 23 1.00
ACGTcount: A:0.37, C:0.07, G:0.22, T:0.34
Consensus pattern (17 bp):
TGGCTATAGAGTAATAA
Found at i:242959 original size:16 final size:16
Alignment explanation
Indices: 242938--242990 Score: 56
Period size: 16 Copynumber: 3.4 Consensus size: 16
242928 TCCATTTTCG
242938 GTATTTAATAAAATAA
1 GTATTTAATAAAATAA
* *
242954 GTATTT-TTAGGAATAA
1 GTATTTAATA-AAATAA
*
242970 ATA-TTAATAAAATAA
1 GTATTTAATAAAATAA
242985 GTATTT
1 GTATTT
242991 TTAACACATT
Statistics
Matches: 28, Mismatches: 6, Indels: 6
0.70 0.15 0.15
Matches are distributed among these distances:
15 11 0.39
16 17 0.61
ACGTcount: A:0.49, C:0.00, G:0.09, T:0.42
Consensus pattern (16 bp):
GTATTTAATAAAATAA
Found at i:242989 original size:15 final size:15
Alignment explanation
Indices: 242942--242989 Score: 51
Period size: 15 Copynumber: 3.1 Consensus size: 15
242932 TTTTCGGTAT
242942 TTAATAAAATAAGTA
1 TTAATAAAATAAGTA
** * *
242957 TTTTTAGGAATAAATA
1 TTAATA-AAATAAGTA
242973 TTAATAAAATAAGTA
1 TTAATAAAATAAGTA
242988 TT
1 TT
242990 TTTAACACAT
Statistics
Matches: 24, Mismatches: 8, Indels: 2
0.71 0.24 0.06
Matches are distributed among these distances:
15 13 0.54
16 11 0.46
ACGTcount: A:0.52, C:0.00, G:0.08, T:0.40
Consensus pattern (15 bp):
TTAATAAAATAAGTA
Found at i:245618 original size:22 final size:22
Alignment explanation
Indices: 245590--245638 Score: 71
Period size: 22 Copynumber: 2.2 Consensus size: 22
245580 TGGAACGAGC
*
245590 TGTGGGCGATGACCAAACTACA
1 TGTGGGCAATGACCAAACTACA
* *
245612 TGTGGGCAATGACCATACTGCA
1 TGTGGGCAATGACCAAACTACA
245634 TGTGG
1 TGTGG
245639 TCAAAGATTG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
22 24 1.00
ACGTcount: A:0.27, C:0.20, G:0.31, T:0.22
Consensus pattern (22 bp):
TGTGGGCAATGACCAAACTACA
Found at i:265013 original size:17 final size:17
Alignment explanation
Indices: 264991--265028 Score: 58
Period size: 17 Copynumber: 2.2 Consensus size: 17
264981 GGTGGAGAAT
* *
264991 TTGTTCGTTGAGAGTTC
1 TTGTTCGTAGAGAATTC
265008 TTGTTCGTAGAGAATTC
1 TTGTTCGTAGAGAATTC
265025 TTGT
1 TTGT
265029 CAAGGTGAAG
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.16, C:0.11, G:0.26, T:0.47
Consensus pattern (17 bp):
TTGTTCGTAGAGAATTC
Found at i:269953 original size:31 final size:29
Alignment explanation
Indices: 269915--270014 Score: 89
Period size: 31 Copynumber: 3.4 Consensus size: 29
269905 TCAATATAAC
*
269915 ATTTGGTACCTGAACTTAACATTTTTTCTTA
1 ATTTGGTACCTGAACTT-A-ATTTTTTCCTA
* * *
269946 ATTTGGTACCT-AAATT--TTTTTGACCCA
1 ATTTGGTACCTGAACTTAATTTTT-TCCTA
*
269973 ATTTGGTATCTGAACTTGATATTTTTTCCTA
1 ATTTGGTACCTGAACTT-A-ATTTTTTCCTA
270004 ATTTGGTACCT
1 ATTTGGTACCT
270015 AAGCTTTTTT
Statistics
Matches: 54, Mismatches: 9, Indels: 12
0.72 0.12 0.16
Matches are distributed among these distances:
26 5 0.09
27 12 0.22
28 4 0.07
30 4 0.07
31 24 0.44
32 5 0.09
ACGTcount: A:0.24, C:0.16, G:0.12, T:0.48
Consensus pattern (29 bp):
ATTTGGTACCTGAACTTAATTTTTTCCTA
Found at i:269977 original size:58 final size:60
Alignment explanation
Indices: 269915--270044 Score: 174
Period size: 58 Copynumber: 2.2 Consensus size: 60
269905 TCAATATAAC
*
269915 ATTTGGTACCTGAACTTAACATTTTTTCTTAATTTGGTACCTAA-ATTTTTTT-GACCCA
1 ATTTGGTACCTGAACTTAACATTTTTTCCTAATTTGGTACCTAAGATTTTTTTAGACCCA
* * * * **
269973 ATTTGGTATCTGAACTTGATATTTTTTCCTAATTTGGTACCTAAGCTTTTTTTAAGATTCA
1 ATTTGGTACCTGAACTTAACATTTTTTCCTAATTTGGTACCTAAGATTTTTTT-AGACCCA
270034 ATTTGGTACCT
1 ATTTGGTACCT
270045 AAATTTATTA
Statistics
Matches: 61, Mismatches: 8, Indels: 3
0.85 0.11 0.04
Matches are distributed among these distances:
58 40 0.66
59 7 0.11
61 14 0.23
ACGTcount: A:0.25, C:0.15, G:0.12, T:0.48
Consensus pattern (60 bp):
ATTTGGTACCTGAACTTAACATTTTTTCCTAATTTGGTACCTAAGATTTTTTTAGACCCA
Found at i:270294 original size:31 final size:31
Alignment explanation
Indices: 270251--270391 Score: 114
Period size: 31 Copynumber: 4.5 Consensus size: 31
270241 GGACCTCAAT
* *
270251 AAGTTTAAGTACCAACTTAAAAAAAAGTGTC
1 AAGTTTAGGTACCAAATTAAAAAAAAGTGTC
** *
270282 AAGTTTAGGTACCAAATTAGGAAAAATTGTC
1 AAGTTTAGGTACCAAATTAAAAAAAAGTGTC
*
270313 AAGTTT-GAGTACCAAATTGGACCAAAAAAA----A
1 AAGTTTAG-GTACCAAATT--A--AAAAAAAGTGTC
*
270344 AAGTTTAGGTATCAAATTAAGAAAAAA-TGTC
1 AAGTTTAGGTACCAAATTAA-AAAAAAGTGTC
*
270375 AAGTTCAGGTACCAAAT
1 AAGTTTAGGTACCAAAT
270392 ATTGTATTAA
Statistics
Matches: 88, Mismatches: 12, Indels: 20
0.73 0.10 0.17
Matches are distributed among these distances:
27 1 0.01
28 6 0.07
29 1 0.01
30 1 0.01
31 72 0.82
32 1 0.01
33 1 0.01
35 5 0.06
ACGTcount: A:0.47, C:0.11, G:0.16, T:0.26
Consensus pattern (31 bp):
AAGTTTAGGTACCAAATTAAAAAAAAGTGTC
Found at i:271556 original size:27 final size:25
Alignment explanation
Indices: 271506--271556 Score: 66
Period size: 27 Copynumber: 2.0 Consensus size: 25
271496 TTGAATTAGA
*
271506 TTTTTTTGTTAATTTGGTACTTAAT
1 TTTTTTTGTTAATTTGATACTTAAT
*
271531 TTTTTTTGGTCTAATTTGATATTTAA
1 TTTTTTT-GT-TAATTTGATACTTAA
271557 ACTTGACTTT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
25 7 0.32
26 2 0.09
27 13 0.59
ACGTcount: A:0.22, C:0.04, G:0.12, T:0.63
Consensus pattern (25 bp):
TTTTTTTGTTAATTTGATACTTAAT
Found at i:272685 original size:15 final size:15
Alignment explanation
Indices: 272665--272694 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
272655 CATAATATAT
272665 ATAAAATAACATAAA
1 ATAAAATAACATAAA
*
272680 ATAAAATATCATAAA
1 ATAAAATAACATAAA
272695 CTTAAAATGA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.70, C:0.07, G:0.00, T:0.23
Consensus pattern (15 bp):
ATAAAATAACATAAA
Found at i:274063 original size:19 final size:19
Alignment explanation
Indices: 274041--274078 Score: 58
Period size: 19 Copynumber: 2.0 Consensus size: 19
274031 AGGTTTAAGG
274041 ATAAAAAAAAAAAAATTTA
1 ATAAAAAAAAAAAAATTTA
* *
274060 ATAAGAAATAAAAAATTTA
1 ATAAAAAAAAAAAAATTTA
274079 TTGAGTTTGT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.74, C:0.00, G:0.03, T:0.24
Consensus pattern (19 bp):
ATAAAAAAAAAAAAATTTA
Found at i:274247 original size:18 final size:19
Alignment explanation
Indices: 274224--274276 Score: 74
Period size: 18 Copynumber: 2.8 Consensus size: 19
274214 CCACCAAAAA
*
274224 TTGAAAAAAAAAAAAT-TT
1 TTGAAAAAAATAAAATATT
274242 TTGAAAAAAATAAAATATT
1 TTGAAAAAAATAAAATATT
274261 TT-AAGAAAAATAAAAT
1 TTGAA-AAAAATAAAAT
274277 GTGCATATAG
Statistics
Matches: 32, Mismatches: 1, Indels: 3
0.89 0.03 0.08
Matches are distributed among these distances:
18 17 0.53
19 15 0.47
ACGTcount: A:0.66, C:0.00, G:0.06, T:0.28
Consensus pattern (19 bp):
TTGAAAAAAATAAAATATT
Found at i:275751 original size:43 final size:42
Alignment explanation
Indices: 275677--275881 Score: 187
Period size: 43 Copynumber: 4.8 Consensus size: 42
275667 ACGTCGCCAC
* * * *
275677 AGAACATGGTCTTTAGCAGCACTTTTACCACAAACGCCGCTAT
1 AGAACATAGTCTTTAGCGGC-GTTTTCCCACAAACGCCGCTAT
* *
275720 AGAACATAGTCTTTAGTGGCGTTTTCCCCACAAATGCCGCTAT
1 AGAACATAGTCTTTAGCGGCGTTTT-CCCACAAACGCCGCTAT
* * * **
275763 AGAACATGGTCTTTAGCGGCGCTTTTCCTACAAATGCCAATAT
1 AGAACATAGTCTTTAGCGGCG-TTTTCCCACAAACGCCGCTAT
* * * * *
275806 AGAACAT-TTCTTTAACGGTGTTTTTCCCATAGACGCCGCTAT
1 AGAACATAGTCTTTAGCGGCG-TTTTCCCACAAACGCCGCTAT
* * *
275848 AGAACATAGTCTTTAACGACGCTTTTCCCTCAAA
1 AGAACATAGTCTTTAGCGGCG-TTTTCCCACAAA
275882 TGGCACTAAT
Statistics
Matches: 131, Mismatches: 28, Indels: 6
0.79 0.17 0.04
Matches are distributed among these distances:
42 36 0.27
43 91 0.69
44 4 0.03
ACGTcount: A:0.28, C:0.25, G:0.17, T:0.30
Consensus pattern (42 bp):
AGAACATAGTCTTTAGCGGCGTTTTCCCACAAACGCCGCTAT
Found at i:275831 original size:86 final size:86
Alignment explanation
Indices: 275677--275883 Score: 224
Period size: 85 Copynumber: 2.4 Consensus size: 86
275667 ACGTCGCCAC
* * * ** **
275677 AGAACATGGTCTTTAGCAGCACTTTTACC-ACAAACGCCGCTATAGAACATAGTCTTTAGTGGCG
1 AGAACATGGTCTTTAGCGGCGCTTTTACCTACAAATGCCAATATAGAACATAGTCTTTAACGGCG
*
275741 TTTTCCCCACAAATGCCGCTAT
66 TTTT-CCCACAAACGCCGCTAT
* *
275763 AGAACATGGTCTTTAGCGGCGCTTTT-CCTACAAATGCCAATATAGAACAT-TTCTTTAACGGTG
1 AGAACATGGTCTTTAGCGGCGCTTTTACCTACAAATGCCAATATAGAACATAGTCTTTAACGGCG
* *
275826 TTTTTCCCATAGACGCCGCTAT
66 -TTTTCCCACAAACGCCGCTAT
* * * *
275848 AGAACATAGTCTTTAACGACGCTTTTCCCT-CAAATG
1 AGAACATGGTCTTTAGCGGCGCTTTTACCTACAAATG
275884 GCACTAATAT
Statistics
Matches: 103, Mismatches: 15, Indels: 7
0.82 0.12 0.06
Matches are distributed among these distances:
85 54 0.52
86 49 0.48
ACGTcount: A:0.28, C:0.25, G:0.17, T:0.30
Consensus pattern (86 bp):
AGAACATGGTCTTTAGCGGCGCTTTTACCTACAAATGCCAATATAGAACATAGTCTTTAACGGCG
TTTTCCCACAAACGCCGCTAT
Found at i:277471 original size:52 final size:52
Alignment explanation
Indices: 277381--277620 Score: 381
Period size: 52 Copynumber: 4.6 Consensus size: 52
277371 TAAATGAAAT
* * * *
277381 AGGTCTGATAACTATGTGTCATCGTAAGTATATGAATCCTTTACAGACTATG
1 AGGTCCGATGACTATGTGTCATCGTGAGTATATGAATCCTTTACGGACTATG
* * *
277433 AGCTCCGATGATTATGTGTCATCGTGAGTATATGAATCCTTTACGGATTATG
1 AGGTCCGATGACTATGTGTCATCGTGAGTATATGAATCCTTTACGGACTATG
277485 AGGTCCGATGACTATGTGTCATCGTGAGTATATGAATCCTTTACGGACTATG
1 AGGTCCGATGACTATGTGTCATCGTGAGTATATGAATCCTTTACGGACTATG
* * *
277537 AGGTTCGATGACTATGTGTCATCGTGAGTATATGAATCCTTTACGAATTATG
1 AGGTCCGATGACTATGTGTCATCGTGAGTATATGAATCCTTTACGGACTATG
*
277589 AGGTCCGATGGCTATGTGTCATCGTGAGTATA
1 AGGTCCGATGACTATGTGTCATCGTGAGTATA
277621 AAAATTCTTT
Statistics
Matches: 173, Mismatches: 15, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
52 173 1.00
ACGTcount: A:0.26, C:0.15, G:0.24, T:0.35
Consensus pattern (52 bp):
AGGTCCGATGACTATGTGTCATCGTGAGTATATGAATCCTTTACGGACTATG
Found at i:277631 original size:52 final size:52
Alignment explanation
Indices: 277381--277670 Score: 377
Period size: 52 Copynumber: 5.6 Consensus size: 52
277371 TAAATGAAAT
* * * *
277381 AGGTCTGATAACTATGTGTCATCGTAAGTATATGAATCCTTTAC-AGACTATG
1 AGGTCCGATGACTATGTGTCATCGTGAGTATATGAATCCTTTACGA-ATTATG
* * *
277433 AGCTCCGATGATTATGTGTCATCGTGAGTATATGAATCCTTTACGGATTATG
1 AGGTCCGATGACTATGTGTCATCGTGAGTATATGAATCCTTTACGAATTATG
* *
277485 AGGTCCGATGACTATGTGTCATCGTGAGTATATGAATCCTTTACGGACTATG
1 AGGTCCGATGACTATGTGTCATCGTGAGTATATGAATCCTTTACGAATTATG
*
277537 AGGTTCGATGACTATGTGTCATCGTGAGTATATGAATCCTTTACGAATTATG
1 AGGTCCGATGACTATGTGTCATCGTGAGTATATGAATCCTTTACGAATTATG
* ** * * *
277589 AGGTCCGATGGCTATGTGTCATCGTGAGTATAAAAATTCTTTATGAATTA-A
1 AGGTCCGATGACTATGTGTCATCGTGAGTATATGAATCCTTTACGAATTATG
* * * *
277640 AAGTCTGATGACTTTGTGTCATCTTGAGTAT
1 AGGTCCGATGACTATGTGTCATCGTGAGTAT
277671 CAAATACACA
Statistics
Matches: 212, Mismatches: 25, Indels: 3
0.88 0.10 0.01
Matches are distributed among these distances:
51 26 0.12
52 186 0.88
ACGTcount: A:0.27, C:0.14, G:0.22, T:0.36
Consensus pattern (52 bp):
AGGTCCGATGACTATGTGTCATCGTGAGTATATGAATCCTTTACGAATTATG
Found at i:290367 original size:23 final size:23
Alignment explanation
Indices: 290336--290400 Score: 112
Period size: 23 Copynumber: 2.8 Consensus size: 23
290326 ATATCATTGT
*
290336 ATCTCAACCGTTGATGTACTCTA
1 ATCTTAACCGTTGATGTACTCTA
290359 ATCTTAACCGTTGATGTACTCTA
1 ATCTTAACCGTTGATGTACTCTA
290382 ATCTTAACCGTTGGATGTA
1 ATCTTAACCGTT-GATGTA
290401 GGGGGCTTCA
Statistics
Matches: 40, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
23 34 0.85
24 6 0.15
ACGTcount: A:0.26, C:0.22, G:0.15, T:0.37
Consensus pattern (23 bp):
ATCTTAACCGTTGATGTACTCTA
Found at i:291641 original size:41 final size:40
Alignment explanation
Indices: 291516--291641 Score: 137
Period size: 40 Copynumber: 3.0 Consensus size: 40
291506 AAAATGTTGT
* * * *
291516 TATTGCTTAACCTTTAGTGGCATTTTTTCCTTAAACGCCGT
1 TATTGCTTAACCTTTAGCGGCA-TTTTCCCATAAACGCCGC
* * *
291557 TAATGTTCTTTACCTATT-GCGGCATTTTCCCATAAACGTCGC
1 T-AT-TGCTTAACCT-TTAGCGGCATTTTCCCATAAACGCCGC
291599 TATTGCTTAACCTTTAGCGGCATTTTCCCCATAAACGCCGC
1 TATTGCTTAACCTTTAGCGGCATTTT-CCCATAAACGCCGC
291640 TA
1 TA
291642 ATGTTATTTT
Statistics
Matches: 70, Mismatches: 10, Indels: 10
0.78 0.11 0.11
Matches are distributed among these distances:
39 2 0.03
40 18 0.26
41 18 0.26
42 17 0.24
43 13 0.19
44 2 0.03
ACGTcount: A:0.21, C:0.26, G:0.14, T:0.38
Consensus pattern (40 bp):
TATTGCTTAACCTTTAGCGGCATTTTCCCATAAACGCCGC
Found at i:291994 original size:13 final size:13
Alignment explanation
Indices: 291967--291999 Score: 50
Period size: 13 Copynumber: 2.5 Consensus size: 13
291957 ATATAATTAA
291967 TTATTATCTTATT
1 TTATTATCTTATT
291980 TTATT-TCTTACTT
1 TTATTATCTTA-TT
291993 TTATTAT
1 TTATTAT
292000 TTTGTTAACC
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
12 5 0.28
13 12 0.67
14 1 0.06
ACGTcount: A:0.21, C:0.09, G:0.00, T:0.70
Consensus pattern (13 bp):
TTATTATCTTATT
Found at i:292371 original size:18 final size:18
Alignment explanation
Indices: 292345--292390 Score: 58
Period size: 18 Copynumber: 2.6 Consensus size: 18
292335 TTCTTCTTAT
*
292345 TCAAACTCTCTAACTCTC
1 TCAAACTCTCAAACTCTC
*
292363 TCAAGCTCTCAAACTCTC
1 TCAAACTCTCAAACTCTC
292381 -CACAACTCTC
1 TCA-AACTCTC
292391 CAAAACAACT
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
17 2 0.08
18 22 0.92
ACGTcount: A:0.28, C:0.41, G:0.02, T:0.28
Consensus pattern (18 bp):
TCAAACTCTCAAACTCTC
Found at i:293514 original size:19 final size:19
Alignment explanation
Indices: 293456--293527 Score: 67
Period size: 19 Copynumber: 3.7 Consensus size: 19
293446 ACTAAAATTA
* *
293456 TATTTATATTAAACTATAAT
1 TATTTATATTAAA-AATATT
* *
293476 T-TTTATTTGTTAAAAT-TT
1 TATTTATAT-TAAAAATATT
293494 TATTTATATTAAAAATATT
1 TATTTATATTAAAAATATT
293513 TATGTTATATTAAAA
1 TAT-TTATATTAAAA
293528 TTAAAATGTA
Statistics
Matches: 42, Mismatches: 6, Indels: 8
0.75 0.11 0.14
Matches are distributed among these distances:
18 8 0.19
19 19 0.45
20 15 0.36
ACGTcount: A:0.42, C:0.01, G:0.03, T:0.54
Consensus pattern (19 bp):
TATTTATATTAAAAATATT
Found at i:293520 original size:20 final size:18
Alignment explanation
Indices: 293487--293527 Score: 64
Period size: 20 Copynumber: 2.2 Consensus size: 18
293477 TTTATTTGTT
293487 AAAATTTTATTTATATTA
1 AAAATTTTATTTATATTA
293505 AAAATATTTATGTTATATTA
1 AAAAT-TTTAT-TTATATTA
293525 AAA
1 AAA
293528 TTAAAATGTA
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
18 5 0.24
19 5 0.24
20 11 0.52
ACGTcount: A:0.49, C:0.00, G:0.02, T:0.49
Consensus pattern (18 bp):
AAAATTTTATTTATATTA
Found at i:293640 original size:42 final size:40
Alignment explanation
Indices: 293559--293640 Score: 101
Period size: 40 Copynumber: 2.0 Consensus size: 40
293549 CGTCGTTTTT
* *
293559 CCCATAAACGTCGCTATTACTTTACCGTCTGCGGTGTTTA
1 CCCATAAACGTCGCTATTACTTTACCGTCTGCAGCGTTTA
* * *
293599 CCCATAAACGTCGCTATTGCTCTTTACCTTTTGCAGCGTTTA
1 CCCATAAACGTCGCTATT--ACTTTACCGTCTGCAGCGTTTA
293641 TGGGAAAGTG
Statistics
Matches: 35, Mismatches: 5, Indels: 2
0.83 0.12 0.05
Matches are distributed among these distances:
40 18 0.51
42 17 0.49
ACGTcount: A:0.20, C:0.28, G:0.16, T:0.37
Consensus pattern (40 bp):
CCCATAAACGTCGCTATTACTTTACCGTCTGCAGCGTTTA
Found at i:293699 original size:82 final size:82
Alignment explanation
Indices: 293570--293835 Score: 261
Period size: 82 Copynumber: 3.3 Consensus size: 82
293560 CCATAAACGT
* * * * *
293570 CGCTATTACTTTACCGTCTGCGGTGTTTACCCAT-AAACGTCGCTATTGCTCTTTACCTTTTGCA
1 CGCTATTGCTTTACCTTTTGCGGTGTTTA-CCATAAAACGCCACTATTGCTCTTTACCTTTTGCA
*
293634 GCGTTTATGGGAAAGTGC
65 GCGTTTATGGAAAAGTGC
* * **
293652 CGCTATTGCTTTACCTTTTGCGGTGTTTTACCATAAAAC-CCATTATTGCTCTTTACTTTTTGTG
1 CGCTATTGCTTTACCTTTTGCGGTG-TTTACCATAAAACGCCACTATTGCTCTTTACCTTTTGCA
* * *
293716 GCGTTTATGGTAAAGCGT
65 GCGTTTATGGAAAAGTGC
* * * * ****
293734 CTCTATTGTTTTACCTTTTGCAGCGTTTATGGGAAAACGCCACTATTG--CTTTACCTTTTGCAG
1 CGCTATTGCTTTACCTTTTGCGGTGTTTACCATAAAACGCCACTATTGCTCTTTACCTTTTGCAG
* *
293797 CGTTTATTGAAAAATGC
66 CGTTTATGGAAAAGTGC
* *
293814 CGCTATTGCGTTACTTTTTGCG
1 CGCTATTGCTTTACCTTTTGCG
293836 ACATTTTCGG
Statistics
Matches: 147, Mismatches: 34, Indels: 8
0.78 0.18 0.04
Matches are distributed among these distances:
80 41 0.28
81 9 0.06
82 89 0.61
83 8 0.05
ACGTcount: A:0.19, C:0.21, G:0.19, T:0.41
Consensus pattern (82 bp):
CGCTATTGCTTTACCTTTTGCGGTGTTTACCATAAAACGCCACTATTGCTCTTTACCTTTTGCAG
CGTTTATGGAAAAGTGC
Done.