genome.fa.s15267.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01015267.1 Kokia drynarioides strain JFW-HI SEQ_130312, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  275530

Tables:   1   

This is table  1  of  1  ( 98 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1050--1088	19	2.1	19	95	0	69	43	17	15	23	1.87
4164--4207	22	2.2	19	88	12	61	36	15	0	47	1.46
4557--4627	35	2.0	35	94	0	124	45	19	12	22	1.84
20273--20305	17	1.9	17	93	0	57	57	0	3	39	1.14
20265--20302	20	1.9	20	88	0	58	60	0	2	36	1.11
23783--23841	29	2.0	29	100	0	118	23	15	27	33	1.95
23792--23855	29	2.2	29	88	0	92	29	18	21	29	1.97
29424--29455	14	2.4	13	94	5	55	71	0	3	25	1.00
29438--29480	20	2.2	20	87	8	61	76	2	0	20	0.89
32880--33003	60	2.1	60	84	0	158	25	17	28	28	1.98
37213--37275	28	2.2	28	83	5	74	26	9	30	33	1.88
37259--37496	59	4.1	57	75	11	198	39	5	21	33	1.75
37408--37821	30	14.1	30	71	17	194	39	2	23	34	1.70
37385--37801	88	4.7	88	74	13	313	38	3	23	34	1.71
37267--37713	118	3.8	116	75	10	372	38	4	22	34	1.73
37408--37802	59	6.7	59	78	6	288	38	3	23	34	1.70
37602--37801	29	6.8	30	70	19	93	36	3	26	35	1.72
37489--37841	59	6.0	59	77	8	175	39	2	23	34	1.69
39049--39099	19	2.6	20	84	6	77	43	3	0	52	1.19
39803--39898	17	5.5	17	75	3	84	53	8	3	35	1.47
39809--39898	35	2.6	34	80	3	108	54	7	3	34	1.46
40329--40685	49	7.3	49	77	8	350	16	26	19	37	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40308--40679	98	3.8	98	92	3	572	16	26	20	37	1.93
45394--45431	16	2.4	16	100	0	76	42	34	5	18	1.73
52533--52690	59	2.7	57	81	13	178	34	9	24	31	1.87
52675--52718	23	1.9	23	95	0	79	25	4	36	34	1.76
52801--52899	28	3.5	28	78	13	94	41	2	22	34	1.65
52801--52899	29	3.5	28	76	18	89	41	2	22	34	1.65
52911--52989	29	2.7	30	76	13	92	30	5	30	34	1.79
52971--53102	29	4.6	28	71	12	88	38	2	24	34	1.68
52864--53015	59	2.6	58	76	7	164	36	5	23	34	1.79
52971--53143	28	6.0	27	73	10	103	41	2	23	32	1.69
52969--53154	58	3.2	57	79	9	171	40	2	24	32	1.69
52968--53176	30	7.1	30	70	15	125	38	2	25	33	1.69
53920--54000	35	2.3	35	100	0	162	19	16	7	56	1.63
54366--54417	19	2.6	21	84	9	81	44	3	1	50	1.31
55127--55197	17	4.1	17	76	5	70	53	7	1	38	1.37
55133--55199	35	1.9	34	87	3	98	53	7	1	37	1.38
65605--65673	24	2.9	24	80	4	86	36	5	10	47	1.61
67140--67322	96	1.9	95	84	8	246	36	13	19	29	1.90
67584--68022	59	7.5	58	82	9	459	33	4	29	32	1.78
67584--68021	29	14.9	29	79	12	427	33	4	29	32	1.79
67584--68022	117	3.7	116	82	7	457	33	4	29	32	1.78
69002--69040	15	2.4	16	83	8	53	43	0	5	51	1.24
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69704--69750	24	2.0	23	87	4	67	48	2	2	46	1.25
69717--69796	17	4.6	17	84	1	106	53	1	1	43	1.16
69714--69796	6	14.3	6	70	16	59	53	1	1	44	1.16
71563--71604	21	2.0	21	100	0	84	19	23	4	52	1.65
79694--79751	20	3.1	19	75	7	57	74	1	18	5	1.10
81239--81275	16	2.2	17	95	4	67	56	0	0	43	0.99
81255--81289	11	3.2	11	87	0	52	48	0	0	51	1.00
82884--83013	68	1.9	67	83	9	165	40	3	3	52	1.35
86687--87062	23	16.3	23	86	0	509	34	6	13	46	1.68
90786--90951	63	2.7	62	90	6	266	42	0	4	53	1.20
93441--93506	31	2.1	31	88	0	96	25	21	10	42	1.85
98183--98298	50	2.3	49	82	8	128	35	15	25	23	1.94
98216--98310	50	1.9	50	89	8	149	32	14	27	25	1.95
98216--98360	50	2.9	50	79	13	147	33	15	26	24	1.95
98348--98734	79	4.9	79	86	0	540	30	25	19	25	1.98
99263--99426	63	2.7	62	87	7	246	40	0	4	55	1.19
99538--99564	1	27.0	1	100	0	54	100	0	0	0	0.00
99564--99590	2	13.5	2	100	0	54	51	0	0	48	1.00
103622--103663	20	2.0	20	86	4	57	73	14	0	11	1.09
105085--105123	15	2.5	16	88	12	55	33	0	2	64	1.08
105118--105166	20	2.3	22	86	6	66	48	0	6	44	1.27
112041--112108	34	2.0	34	100	0	136	26	8	20	44	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
116162--116186	2	12.5	2	100	0	50	0	0	48	52	1.00
117583--117641	24	2.5	23	83	5	64	10	18	40	30	1.84
120863--120987	64	2.0	63	82	4	153	20	15	16	48	1.82
133130--133186	15	4.0	13	75	18	51	36	0	0	63	0.95
139604--139653	26	1.9	26	88	8	75	30	4	2	64	1.23
140051--140152	49	2.1	49	96	0	186	31	7	5	54	1.53
144831--144876	21	2.2	21	84	7	58	30	2	4	63	1.26
145173--145220	14	3.5	13	77	11	51	62	0	4	33	1.14
145846--145901	8	6.6	8	78	10	58	48	1	5	44	1.36
145838--145906	34	2.0	34	100	0	138	46	2	5	44	1.42
161096--161165	30	2.3	31	95	2	124	55	10	12	21	1.66
162714--162775	23	2.7	23	82	7	83	45	3	0	51	1.17
179552--179576	11	2.3	11	100	0	50	28	36	0	36	1.58
179919--180011	46	2.0	46	83	4	116	36	24	10	27	1.89
185493--185687	103	1.9	103	90	0	309	37	14	9	37	1.80
196124--196166	4	10.8	4	94	0	68	46	25	4	23	1.71
197110--197276	85	2.0	85	93	0	289	43	5	5	44	1.51
216270--216399	56	2.4	57	80	5	142	31	15	13	40	1.85
216320--216449	56	2.3	56	82	4	145	33	16	12	37	1.86
217213--217342	23	5.7	22	75	12	93	46	20	20	13	1.83
217212--217351	69	2.0	67	86	10	194	45	20	20	13	1.84
217261--217352	23	4.0	23	82	0	103	45	22	17	14	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
230948--231000	23	2.2	25	87	12	76	50	0	0	49	1.00
230953--231000	22	2.1	21	85	14	60	47	0	0	52	1.00
231610--231641	3	10.7	3	100	0	64	0	31	0	68	0.90
239296--239341	18	2.6	18	92	0	74	50	8	41	0	1.33
250531--250567	16	2.4	16	86	13	51	40	2	2	54	1.29
271262--271306	18	2.5	17	82	10	54	55	4	0	40	1.20
273608--273636	4	7.2	4	100	0	58	75	0	0	24	0.80
274232--274261	11	2.8	11	95	5	53	50	0	6	43	1.28
275154--275207	26	2.0	27	89	3	83	31	22	35	11	1.89
275387--275441	17	3.4	16	90	5	76	60	1	38	0	1.08

Tables:   1

The End!