Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NTFQ01015268.1 Kokia drynarioides strain JFW-HI SEQ_130313, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 29381
ACGTcount: A:0.35, C:0.18, G:0.16, T:0.31
Found at i:7651 original size:206 final size:204
Alignment explanation
Indices: 7122--7690 Score: 680
Period size: 206 Copynumber: 2.8 Consensus size: 204
7112 AACAATGCGG
* * * * * **
7122 TCATCTTCCTGATGAGATGCT-AGGAAGAAGACCAAACCAAGCCCACGCTC-AAAACGAGCAAAA
1 TCATCTTCCCGATGAGATACTGA-GAAGAAGACCAAACCAAACTCACGCCCGATGA-GAGC-AAA
* ** * *
7185 TCTTTGAACCCCAAGCTTCCTGATGAGACACCGAGAAGCAGGTCGAAGCAATAGA-CGGTTAGCT
63 TCTTCGAACCCC-AGCTTCCTGATGAGACATTGAGAAGCAGGTCGAAGCAATAAAGTGGTTAGC-
* * *
7249 TCCTGATGAGATACGGAGAAGTGAACCAAATTCGTCTTCCTGATGAGATACAGAGAAGCGCATTG
126 TCCCGATGAGATACGGAGAAGTGAACCAAATTCGTCTTCCTGATGAGATACAGAGAAACGAATTG
***
7314 AAACAACGATGTGA
191 AAACAACGAACAGA
* * * * * * *
7328 TCATCTTTCTGATGAGATACTGAGAATAAGACCAAACCAAACTCACGCTCGATGTGAGCGAAGCT
1 TCATCTTCCCGATGAGATACTGAGAAGAAGACCAAACCAAACTCACGCCCGATGAGAGCAAATCT
* * * * **
7393 TCAAATCCCAGCTTCCTGATGAGGCATTGAGAAGCAAGTCGAAGTGATAAAGTGGTTAGCTCCAC
66 TCGAACCCCAGCTTCCTGATGAGACATTGAGAAGCAGGTCGAAGCAATAAAGTGGTTAGCTCC-C
*
7458 GATGAGATACGGAGAAGTGAACCAAATTCGTCTTCCTGTTGAGATACAGAGAAACGAATTGAAAC
130 GATGAGATACGGAGAAGTGAACCAAATTCGTCTTCCTGATGAGATACAGAGAAACGAATTGAAA-
*
7523 CAATGACACAG-
194 CAACGA-ACAGA
*
7534 TCATCTTCCCGATGAGATACTGAGAAGAAGA-CAAGATCAAACTCACGCCCGATGAGAGCAAATC
1 TCATCTTCCCGATGAGATACTGAGAAGAAGACCAA-ACCAAACTCACGCCCGATGAGAGCAAATC
* *
7598 TTCGAACCCCAGCTTCTTGATGAGACATTGAGAAGTAGGTCGAAGCAATAAAGTGGTTAGCTCCC
65 TTCGAACCCCAGCTTCCTGATGAGACATTGAGAAGCAGGTCGAAGCAATAAAGTGGTTAGCTCCC
*
7663 TGATGAGATACAGAGAAGTGAACCAAAT
130 -GATGAGATACGGAGAAGTGAACCAAAT
7691 CCTGATGGAA
Statistics
Matches: 309, Mismatches: 46, Indels: 16
0.83 0.12 0.04
Matches are distributed among these distances:
204 38 0.12
205 82 0.27
206 186 0.60
207 3 0.01
ACGTcount: A:0.35, C:0.21, G:0.23, T:0.20
Consensus pattern (204 bp):
TCATCTTCCCGATGAGATACTGAGAAGAAGACCAAACCAAACTCACGCCCGATGAGAGCAAATCT
TCGAACCCCAGCTTCCTGATGAGACATTGAGAAGCAGGTCGAAGCAATAAAGTGGTTAGCTCCCG
ATGAGATACGGAGAAGTGAACCAAATTCGTCTTCCTGATGAGATACAGAGAAACGAATTGAAACA
ACGAACAGA
Found at i:8128 original size:35 final size:35
Alignment explanation
Indices: 8089--8204 Score: 142
Period size: 35 Copynumber: 3.3 Consensus size: 35
8079 CCATACTCCC
*
8089 TTTAAATTTATTTTAAAATTAAATTTGTTTAAAAA
1 TTTAAATTTATTTTAAAATTAAATTTATTTAAAAA
* *
8124 TTTAAATTTATTTTAAATTTAAATTTATTTTAAAA
1 TTTAAATTTATTTTAAAATTAAATTTATTTAAAAA
* ** * **
8159 TTTAAATTTAATTTAAGTTTAAAATTATTTTCAAA
1 TTTAAATTTATTTTAAAATTAAATTTATTTAAAAA
8194 TTTAAAATTTA
1 TTT-AAATTTA
8205 AAATAAATAA
Statistics
Matches: 73, Mismatches: 7, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
35 66 0.90
36 7 0.10
ACGTcount: A:0.44, C:0.01, G:0.02, T:0.53
Consensus pattern (35 bp):
TTTAAATTTATTTTAAAATTAAATTTATTTAAAAA
Found at i:8130 original size:18 final size:18
Alignment explanation
Indices: 8089--8204 Score: 148
Period size: 17 Copynumber: 6.6 Consensus size: 18
8079 CCATACTCCC
8089 TTTAAATTTATTTTAAAA
1 TTTAAATTTATTTTAAAA
* *
8107 -TTAAATTTGTTTAAAAA
1 TTTAAATTTATTTTAAAA
8124 TTTAAATTTATTTT-AAA
1 TTTAAATTTATTTTAAAA
8141 TTTAAATTTATTTTAAAA
1 TTTAAATTTATTTTAAAA
* *
8159 TTTAAATTTAATTT-AAG
1 TTTAAATTTATTTTAAAA
* *
8176 TTTAAAATTATTTTCAAA
1 TTTAAATTTATTTTAAAA
8194 TTTAAAATTTA
1 TTT-AAATTTA
8205 AAATAAATAA
Statistics
Matches: 84, Mismatches: 10, Indels: 7
0.83 0.10 0.07
Matches are distributed among these distances:
17 46 0.55
18 32 0.38
19 6 0.07
ACGTcount: A:0.44, C:0.01, G:0.02, T:0.53
Consensus pattern (18 bp):
TTTAAATTTATTTTAAAA
Found at i:8208 original size:7 final size:6
Alignment explanation
Indices: 8121--8206 Score: 72
Period size: 6 Copynumber: 14.5 Consensus size: 6
8111 ATTTGTTTAA
* *
8121 AAATTT AAATTT -ATTTT AAATTT AAATTT -ATTTT AAAATTT AAATTT
1 AAATTT AAATTT AAATTT AAATTT AAATTT AAATTT -AAATTT AAATTT
* * *
8168 -AATTT AAGTTT AAAATT -ATTTT CAAATTT AAAATTT AAA
1 AAATTT AAATTT AAATTT AAATTT -AAATTT -AAATTT AAA
8207 ATAAATAAAA
Statistics
Matches: 63, Mismatches: 11, Indels: 12
0.73 0.13 0.14
Matches are distributed among these distances:
5 16 0.25
6 33 0.52
7 14 0.22
ACGTcount: A:0.47, C:0.01, G:0.01, T:0.51
Consensus pattern (6 bp):
AAATTT
Found at i:9980 original size:30 final size:29
Alignment explanation
Indices: 9946--10196 Score: 244
Period size: 30 Copynumber: 8.4 Consensus size: 29
9936 GGAGGTCCCT
*
9946 AACTTCCAAAAATCCTATTTTTGACCCTGA
1 AACTTCCAAAAATCCTATTTTT-ACCCCGA
*
9976 AACTTCCAAAAAT-TTCATTTTTACCCTCG-
1 AACTTCCAAAAATCCT-ATTTTTACCC-CGA
* *
10005 AACTTCAAAAAAT-CTCATTTTTAACCCCAA
1 AACTTCCAAAAATCCT-ATTTTT-ACCCCGA
*
10035 AACTTCCAAAAATTCC-ATTTTTACCCCCA
1 AACTTCCAAAAA-TCCTATTTTTACCCCGA
* *
10064 AACTTCCAAAAATCCCATTTTTAACCCCAA
1 AACTTCCAAAAATCCTATTTTT-ACCCCGA
* * *
10094 AACTTCCAAAAATCCCATTTTTAACCTCAA
1 AACTTCCAAAAATCCTATTTTT-ACCCCGA
*
10124 AACTTCCAAAAATTCTATTTTTACCCTCG-
1 AACTTCCAAAAATCCTATTTTTACCC-CGA
10153 AACTTCCAAAAAT-CTCATTTTTGACCCCGA
1 AACTTCCAAAAATCCT-ATTTTT-ACCCCGA
*
10183 AATTTCCCAAAAAT
1 AACTT-CCAAAAAT
10197 ACCCTTTTAC
Statistics
Matches: 194, Mismatches: 14, Indels: 25
0.83 0.06 0.11
Matches are distributed among these distances:
28 5 0.03
29 74 0.38
30 105 0.54
31 9 0.05
32 1 0.01
ACGTcount: A:0.37, C:0.29, G:0.02, T:0.32
Consensus pattern (29 bp):
AACTTCCAAAAATCCTATTTTTACCCCGA
Found at i:10038 original size:59 final size:60
Alignment explanation
Indices: 9946--10196 Score: 282
Period size: 59 Copynumber: 4.2 Consensus size: 60
9936 GGAGGTCCCT
* ** ** *
9946 AACTTCCAAAAATC-CTATTTTTGACCCTGAAACTTCCAAAAATTTCATTTTTACCCTCG
1 AACTTCCAAAAATCTCTATTTTTAACCCCAAAACTTCCAAAAATCCCATTTTTACCCTCA
* * *
10005 AACTTCAAAAAATCTC-ATTTTTAACCCCAAAACTTCCAAAAATTCCATTTTTACCCCCA
1 AACTTCCAAAAATCTCTATTTTTAACCCCAAAACTTCCAAAAATCCCATTTTTACCCTCA
* *
10064 AACTTCCAAAAATC-CCATTTTTAACCCCAAAACTTCCAAAAATCCCATTTTTAACCTCAA
1 AACTTCCAAAAATCTCTATTTTTAACCCCAAAACTTCCAAAAATCCCATTTTTACCCTC-A
* *
10124 AACTTCCAAAAAT-TCTATTTTT-ACCCTC-GAACTTCCAAAAATCTCATTTTTGACCC-CGA
1 AACTTCCAAAAATCTCTATTTTTAACCC-CAAAACTTCCAAAAATCCCATTTTT-ACCCTC-A
*
10183 AATTTCCCAAAAAT
1 AACTT-CCAAAAAT
10197 ACCCTTTTAC
Statistics
Matches: 168, Mismatches: 17, Indels: 13
0.85 0.09 0.07
Matches are distributed among these distances:
58 1 0.01
59 133 0.79
60 34 0.20
ACGTcount: A:0.37, C:0.29, G:0.02, T:0.32
Consensus pattern (60 bp):
AACTTCCAAAAATCTCTATTTTTAACCCCAAAACTTCCAAAAATCCCATTTTTACCCTCA
Found at i:10098 original size:89 final size:87
Alignment explanation
Indices: 9946--10180 Score: 319
Period size: 89 Copynumber: 2.6 Consensus size: 87
9936 GGAGGTCCCT
* * *
9946 AACTTCCAAAAA-TCCTATTTTTGACCCTGAAACTTCCAAAAATTTCATTTTTACCCTCGAACTT
1 AACTTCCAAAAATTCC-ATTTTT-ACCCTCAAACTTCCAAAAATCTCATTTTTACCC-CAAACTT
*
10010 CAAAAAATCTCATTTTTAACCCCAA
63 CAAAAAATCCCATTTTTAACCCCAA
* *
10035 AACTTCCAAAAATTCCATTTTTACCCCCAAACTTCCAAAAATCCCATTTTTAACCCCAAAACTTC
1 AACTTCCAAAAATTCCATTTTTACCCTCAAACTTCCAAAAATCTCATTTTT-ACCCC-AAACTTC
* *
10100 CAAAAATCCCATTTTTAACCTCAA
64 AAAAAATCCCATTTTTAACCCCAA
* *
10124 AACTTCCAAAAATTCTATTTTTACCCTCGAACTTCCAAAAATCTCATTTTTGACCCC
1 AACTTCCAAAAATTCCATTTTTACCCTCAAACTTCCAAAAATCTCATTTTT-ACCCC
10181 GAAATTTCCC
Statistics
Matches: 130, Mismatches: 13, Indels: 6
0.87 0.09 0.04
Matches are distributed among these distances:
88 26 0.20
89 101 0.78
90 3 0.02
ACGTcount: A:0.36, C:0.30, G:0.02, T:0.32
Consensus pattern (87 bp):
AACTTCCAAAAATTCCATTTTTACCCTCAAACTTCCAAAAATCTCATTTTTACCCCAAACTTCAA
AAAATCCCATTTTTAACCCCAA
Found at i:10205 original size:89 final size:86
Alignment explanation
Indices: 9946--10210 Score: 309
Period size: 89 Copynumber: 3.0 Consensus size: 86
9936 GGAGGTCCCT
* *
9946 AACTTCCAAAAATCCTATTTTTGACCCT-GAAACTTCCAAAAATTTCATTTTTACCCTCG-AACT
1 AACTTCCAAAAATTCTATTTTT-ACCCTCG-AACTTCCAAAAATCTCATTTTTACCC-CGAAACT
* *
10009 TCAAAAAATCTCATTTTTAACCCCAA
63 TCCAAAAATC-C-CTTTTAACCCCAA
* * * * *
10035 AACTTCCAAAAATTCCATTTTTACCCCCAAACTTCCAAAAATCCCATTTTTAACCCCAAAACTTC
1 AACTTCCAAAAATTCTATTTTTACCCTCGAACTTCCAAAAATCTCATTTTT-ACCCCGAAACTTC
*
10100 CAAAAATCCCATTTTTAACCTCAA
65 CAAAAATCCC--TTTTAACCCCAA
*
10124 AACTTCCAAAAATTCTATTTTTACCCTCGAACTTCCAAAAATCTCATTTTTGACCCCGAAATTTC
1 AACTTCCAAAAATTCTATTTTTACCCTCGAACTTCCAAAAATCTCATTTTT-ACCCCGAAACTT-
*
10189 CCAAAAATACCCTTTTACCCCC
64 CCAAAAAT-CCCTTTTAACCCC
10211 GAGTATCCGA
Statistics
Matches: 150, Mismatches: 19, Indels: 14
0.82 0.10 0.08
Matches are distributed among these distances:
88 26 0.17
89 113 0.75
90 8 0.05
91 3 0.02
ACGTcount: A:0.35, C:0.31, G:0.02, T:0.32
Consensus pattern (86 bp):
AACTTCCAAAAATTCTATTTTTACCCTCGAACTTCCAAAAATCTCATTTTTACCCCGAAACTTCC
AAAAATCCCTTTTAACCCCAA
Found at i:15238 original size:2 final size:2
Alignment explanation
Indices: 15231--15263 Score: 66
Period size: 2 Copynumber: 16.5 Consensus size: 2
15221 TCACGAAAAT
15231 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
15264 CCTTCTCATG
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:17118 original size:145 final size:145
Alignment explanation
Indices: 16854--17132 Score: 522
Period size: 145 Copynumber: 1.9 Consensus size: 145
16844 AACTAAGCTT
16854 ACTAAAATATTTATAAAATAATCAAAGATGAAATAAACTAAAATATAATGAAAATGTCAAAATTA
1 ACTAAAATATTTATAAAATAATCAAAGATGAAATAAACTAAAATATAATGAAAATGTCAAAATTA
* **
16919 TATATATTACACTATTTTATTAGAAAAATTATTTGGTACACTGTCATGGGTTGACAAGTATCCTA
66 TATATATTACACTATTTTATTAGAAAAATTATTTGGTACACTATCATGAATTGACAAGTATCCTA
16984 TAAAATAATATTTAC
131 TAAAATAATATTTAC
16999 ACTAAAATATTTATAAAATAATCAAAGATGAAATAAACTAAAATATAATGAAAATGTCAAAATTA
1 ACTAAAATATTTATAAAATAATCAAAGATGAAATAAACTAAAATATAATGAAAATGTCAAAATTA
*
17064 TATATATTACACTGTTTTATTAGAAAAATTATTTGGTACACTATCATGAATTGACAAGTATCCTA
66 TATATATTACACTATTTTATTAGAAAAATTATTTGGTACACTATCATGAATTGACAAGTATCCTA
17129 TAAA
131 TAAA
17133 GATATAATAA
Statistics
Matches: 130, Mismatches: 4, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
145 130 1.00
ACGTcount: A:0.48, C:0.09, G:0.09, T:0.34
Consensus pattern (145 bp):
ACTAAAATATTTATAAAATAATCAAAGATGAAATAAACTAAAATATAATGAAAATGTCAAAATTA
TATATATTACACTATTTTATTAGAAAAATTATTTGGTACACTATCATGAATTGACAAGTATCCTA
TAAAATAATATTTAC
Found at i:19512 original size:15 final size:15
Alignment explanation
Indices: 19488--19517 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
19478 TTTACCAAAT
*
19488 AAAAAGAAAAAAGAA
1 AAAAAAAAAAAAGAA
19503 AAAAAAAAAAAAGAA
1 AAAAAAAAAAAAGAA
19518 TCTTACTCGT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.90, C:0.00, G:0.10, T:0.00
Consensus pattern (15 bp):
AAAAAAAAAAAAGAA
Found at i:26162 original size:591 final size:591
Alignment explanation
Indices: 25038--26980 Score: 3679
Period size: 591 Copynumber: 3.3 Consensus size: 591
25028 GGTAAGGATC
* * * * *
25038 ATTGCCACCTTCCCCAATTTTAAGCCTCCACATTTTCTCCCTTTATTTATTCTTTCACTATCAAT
1 ATTGCCACCTTCCCCAATCTTAAGCCTCCACATTTTCTCCCTTCATTTAGTCTTTCACCACCAAT
*
25103 TCAAGAATTGAACTGTAAGCGATAGTGGTTGGTAGTTTTAAGGAATGGAGAAAATAGGAACGAAA
66 TCAAGAATTGAACTGTAAGCGATAGTGGTTGGTAGCTTTAAGGAATGGAGAAAATAGGAACGAAA
*
25168 ATATGGCTATCATTTGATGATAAAAACCTCCCACTTATATAGACTTTAAACAATTACTGCTTACC
131 ATATGGCTATCATTTGATGATAAAAACCTCCCACTTATATAGACTTTAAACAACTACTGCTTACC
*
25233 ACTATTAAATTATCAAATTAAAATAATTATATAGACTTTATTAAAGAAATGATACAAAATTTGTA
196 ACTATTAAATTATCAAATTAAAATAATTATATAGACTTTATTAAAGAAATGGTACAAAATTTGTA
*
25298 CCATTCCATAGATATTTTTATTGAAAATTAAAATAATAGTGTATATTTTTTGGGGTTATTCCTTC
261 CCATTCCATAGATATTTTTATTGAAAATTAAAATAATAGTGCATATTTTTTGGGGTTATTCCTTC
25363 TTTAATATTTCAAATTTTTTATACAATTTTTACTACTACACATATTTCAAACTCTCAAGTCGAAA
326 TTTAATATTTCAAATTTTTTATACAATTTTTACTACTACACATATTTCAAACTCTCAAGTCGAAA
25428 TTAAGCTAAAATTTTTACTCTAAAATTGAATTTAATAAATAAAAAACCTATACCAAAATATCTTC
391 TTAAGCTAAAATTTTTACTCTAAAATTGAATTTAATAAATAAAAAACCTATACCAAAATATCTTC
* *
25493 TAATCTATGTTCGTTGAAATTTGAGTTTTAAAATAAAATTAAATCACATCAATTGCATTTAATAA
456 TGATCTATGTTCGTTGAAATTTGAGTTTTAAAATACAATTAAATCACATCAATTGCATTTAATAA
25558 TCAATAGCGATGTAGCTTAAATAATAGAGCATTTAATAATCGCATTTGACAATTACCAAAAGGTC
521 TCAATAGCGATGTAGCTTAAATAATAGAGCATTTAATAATCGCATTTGACAATTACCAAAAGGTC
*
25623 CCGTGA
586 CTGTGA
* * *
25629 ATTGCCACCTTCCCCAATTTTAAGCCTCCACATTTTCTTCCTTCATTTAGTCTTTCACCATCAAT
1 ATTGCCACCTTCCCCAATCTTAAGCCTCCACATTTTCTCCCTTCATTTAGTCTTTCACCACCAAT
25694 TCAAGAATTGAACTGTAAGCGATAGTGGTTGGTAGCTTTAAGGAATGGAGAAAATAGGAACGAAA
66 TCAAGAATTGAACTGTAAGCGATAGTGGTTGGTAGCTTTAAGGAATGGAGAAAATAGGAACGAAA
25759 ATATGGCTATCATTTGATGATAAAAACCTCCCACTTATATAGACTTTAAACAACTACTGCTTACC
131 ATATGGCTATCATTTGATGATAAAAACCTCCCACTTATATAGACTTTAAACAACTACTGCTTACC
25824 ACTATTAAATTATCAAATTAAAATAATTATATAGACTTTATTAAAGAAATGGTACAAAATTTGTA
196 ACTATTAAATTATCAAATTAAAATAATTATATAGACTTTATTAAAGAAATGGTACAAAATTTGTA
25889 CCATTCCATAGATATTTTTATTGAAAATTAAAATAATAGTGCATATTTTTTGGGGTTATTCCTTC
261 CCATTCCATAGATATTTTTATTGAAAATTAAAATAATAGTGCATATTTTTTGGGGTTATTCCTTC
25954 TTTAATATTTCAAATTTTTTATACAATTTTTACTACTACACATATTTCAAACTCTCAAGTCGAAA
326 TTTAATATTTCAAATTTTTTATACAATTTTTACTACTACACATATTTCAAACTCTCAAGTCGAAA
*
26019 TTAAGCTAAATTTTTTACTCTAAAATTGAATTTAATAAATAAAAAACCTATACCAAAATATCTTC
391 TTAAGCTAAAATTTTTACTCTAAAATTGAATTTAATAAATAAAAAACCTATACCAAAATATCTTC
26084 TGATCTATGTTCGTTGAAATTTGAGTTTTAAAATACAATTAAATCACATCAATTGCATTTAATAA
456 TGATCTATGTTCGTTGAAATTTGAGTTTTAAAATACAATTAAATCACATCAATTGCATTTAATAA
*
26149 TCAATAACGATGTAGCTTAAATAATAGAGCATTTAATAATCGCATTTGACAATTACCAAAAGGTC
521 TCAATAGCGATGTAGCTTAAATAATAGAGCATTTAATAATCGCATTTGACAATTACCAAAAGGTC
*
26214 TTGTGA
586 CTGTGA
*
26220 ATTGCCACCTTCCCCAATCTTAAGCCTCCATATTTTCTCCCTTCATTTAGTCTTTCACCACCAAT
1 ATTGCCACCTTCCCCAATCTTAAGCCTCCACATTTTCTCCCTTCATTTAGTCTTTCACCACCAAT
26285 TCAAGAATTGAACTGTAAGCGATAGTGGTTGGTAGCTTTAAGGAATGGAGAAAATAGGAACGAAA
66 TCAAGAATTGAACTGTAAGCGATAGTGGTTGGTAGCTTTAAGGAATGGAGAAAATAGGAACGAAA
26350 ATATGGCTATCATTTGATGATAAAAACCTCCCACTTATATAGACTTTAAACAACTACTGCTTACC
131 ATATGGCTATCATTTGATGATAAAAACCTCCCACTTATATAGACTTTAAACAACTACTGCTTACC
26415 ACTATTAAATTATCAAATTAAAATAATTATATAGACTTTATTAAAGAAATGGTACAAAATTTGTA
196 ACTATTAAATTATCAAATTAAAATAATTATATAGACTTTATTAAAGAAATGGTACAAAATTTGTA
26480 CCATTCCATAGATATTTTTATTGAAAATTAAAATAATAGTGCATATTTTTTGGGGTTATTCCTTC
261 CCATTCCATAGATATTTTTATTGAAAATTAAAATAATAGTGCATATTTTTTGGGGTTATTCCTTC
* *
26545 TTTAATATTTCAAATTTTTTATACAATTTTTACTTCTACACATATTTCAAACTCTCAAGTCAAAA
326 TTTAATATTTCAAATTTTTTATACAATTTTTACTACTACACATATTTCAAACTCTCAAGTCGAAA
* *
26610 TTAAGCTAAAATTTTTACTCTAAAATTGAATCTAATAAATAAAAAACCCATACCAAAATATCTTC
391 TTAAGCTAAAATTTTTACTCTAAAATTGAATTTAATAAATAAAAAACCTATACCAAAATATCTTC
26675 TGATCTATGTTCGTTGAAATTTGAGTTTTAAAATACAATTAAATCACATCAATTGCATTTAATAA
456 TGATCTATGTTCGTTGAAATTTGAGTTTTAAAATACAATTAAATCACATCAATTGCATTTAATAA
26740 TCAATAGCGATGTAGCTTAAATAATAGAGCATTTAATAATCGCATTTGACAATTACCAAAAGGTC
521 TCAATAGCGATGTAGCTTAAATAATAGAGCATTTAATAATCGCATTTGACAATTACCAAAAGGTC
26805 CTGTGA
586 CTGTGA
26811 ATTGCCACCTTCCCCAATCTTAAGCCTCCACATTTTCTCCCTTCATTTAGTCTTTCACCACCAAT
1 ATTGCCACCTTCCCCAATCTTAAGCCTCCACATTTTCTCCCTTCATTTAGTCTTTCACCACCAAT
26876 TCAAGAATTGAACTGTAAGCGATAGTGGTTGGTAGCTTTAAGGAATGGAGAAAATAGGAACGAAA
66 TCAAGAATTGAACTGTAAGCGATAGTGGTTGGTAGCTTTAAGGAATGGAGAAAATAGGAACGAAA
26941 ATATGGCTATCATTTGATGATAAAAACCTCCCACTTATAT
131 ATATGGCTATCATTTGATGATAAAAACCTCCCACTTATAT
26981 GAAGGTACTG
Statistics
Matches: 1326, Mismatches: 26, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
591 1326 1.00
ACGTcount: A:0.37, C:0.16, G:0.11, T:0.36
Consensus pattern (591 bp):
ATTGCCACCTTCCCCAATCTTAAGCCTCCACATTTTCTCCCTTCATTTAGTCTTTCACCACCAAT
TCAAGAATTGAACTGTAAGCGATAGTGGTTGGTAGCTTTAAGGAATGGAGAAAATAGGAACGAAA
ATATGGCTATCATTTGATGATAAAAACCTCCCACTTATATAGACTTTAAACAACTACTGCTTACC
ACTATTAAATTATCAAATTAAAATAATTATATAGACTTTATTAAAGAAATGGTACAAAATTTGTA
CCATTCCATAGATATTTTTATTGAAAATTAAAATAATAGTGCATATTTTTTGGGGTTATTCCTTC
TTTAATATTTCAAATTTTTTATACAATTTTTACTACTACACATATTTCAAACTCTCAAGTCGAAA
TTAAGCTAAAATTTTTACTCTAAAATTGAATTTAATAAATAAAAAACCTATACCAAAATATCTTC
TGATCTATGTTCGTTGAAATTTGAGTTTTAAAATACAATTAAATCACATCAATTGCATTTAATAA
TCAATAGCGATGTAGCTTAAATAATAGAGCATTTAATAATCGCATTTGACAATTACCAAAAGGTC
CTGTGA
Done.