Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01001527.1 Kokia drynarioides strain JFW-HI SEQ_113093, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 820

Length: 1367
ACGTcount: A:0.37, C:0.14, G:0.13, T:0.37


Found at i:59 original size:20 final size:20

Alignment explanation


    Indices: 26--96  Score: 56
    Period size: 20  Copynumber: 3.5  Consensus size: 20

         16 AAAAATATAA

                           *      
         26 ATTTTGAAATTTTTTTATAAAT
          1 ATTTTG-AA-TTTTTAATAAAT

                        *     * 
         48 ATTTTGAATTTTAAAT-ATT
          1 ATTTTGAATTTTTAATAAAT

               *               * 
         67 ATTCTGAATTTTTGAA-AATT
          1 ATTTTGAATTTTT-AATAAAT

                      
         87 ATTTTGAATT
          1 ATTTTGAATT

         97 GTGTTTGGAA


Statistics
Matches: 41,  Mismatches: 6, Indels: 6
        0.77            0.11        0.11

Matches are distributed among these distances:
  19   13  0.32
  20   20  0.49
  21    2  0.05
  22    6  0.15

ACGTcount: A:0.35, C:0.01, G:0.07, T:0.56


Consensus pattern (20 bp):   
ATTTTGAATTTTTAATAAAT
Done.