Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01015271.1 Kokia drynarioides strain JFW-HI SEQ_130316, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5326
ACGTcount: A:0.29, C:0.19, G:0.19, T:0.30

Warning! 200 characters in sequence are not A, C, G, or T


Found at i:1971 original size:3 final size:3

Alignment explanation


    Indices: 1965--2029  Score: 51
    Period size: 3  Copynumber: 21.3  Consensus size: 3

       1955 ATTTCTTTTT

                            *             *        *                  *  
       1965 TTA TTA TTA TTA ATA TTA TTAA TCA TTA TTT TTA -TA TTTA TTA CTA
          1 TTA TTA TTA TTA TTA TTA TT-A TTA TTA TTA TTA TTA -TTA TTA TTA

            * *                      
       2011 CTG TTA TTA TTA TTA TTA T
          1 TTA TTA TTA TTA TTA TTA T

       2030 AAATTAATGT


Statistics
Matches: 49,  Mismatches: 10, Indels: 6
        0.75            0.15        0.09

Matches are distributed among these distances:
   2    2  0.04
   3   43  0.88
   4    4  0.08

ACGTcount: A:0.32, C:0.05, G:0.02, T:0.62


Consensus pattern (3 bp):   
TTA

Done.