genome.fa.s15278.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01015278.1 Kokia drynarioides strain JFW-HI SEQ_130323, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  232779

Tables:   1   

This is table  1  of  1  ( 85 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4901--4926	2	13.0	2	100	0	52	50	0	0	50	1.00
4926--4952	2	13.5	2	100	0	54	51	0	48	0	1.00
16971--17004	18	1.9	17	88	5	50	67	0	5	26	1.13
20474--20519	22	2.1	22	84	8	58	36	6	2	54	1.39
25743--25768	3	8.7	3	100	0	52	65	0	0	34	0.93
28445--28485	19	2.1	20	86	13	59	24	2	4	68	1.22
28445--28506	28	2.2	28	82	5	72	27	3	4	64	1.29
34287--34312	5	5.2	5	100	0	52	42	19	0	38	1.51
36535--36575	20	2.0	20	100	0	82	31	24	9	34	1.88
45686--45724	17	2.2	17	86	9	51	48	17	0	33	1.48
45733--45812	28	2.8	28	76	14	74	56	1	2	40	1.21
48276--48317	12	3.6	12	77	6	50	40	21	14	23	1.90
48271--48340	23	3.0	23	81	6	79	41	18	11	28	1.85
49244--49323	37	2.2	37	97	0	151	31	30	22	16	1.96
51303--51379	23	3.3	23	89	7	104	12	23	23	40	1.89
51372--51425	23	2.3	23	100	0	108	16	27	22	33	1.95
56812--57002	61	3.1	61	84	3	251	21	17	14	47	1.82
70112--70296	96	1.9	96	88	6	277	35	14	20	30	1.92
70508--70595	28	3.1	28	78	15	76	30	4	28	36	1.77
70554--70625	30	2.4	30	84	6	85	36	2	25	36	1.70
71476--71585	56	2.0	56	82	10	136	22	20	2	54	1.57
71817--71850	15	2.2	16	89	5	52	50	2	0	47	1.16
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
71825--71870	24	1.9	24	95	0	83	43	4	2	50	1.34
71805--71853	18	2.8	17	78	15	55	44	2	0	53	1.12
72637--72706	17	4.0	18	81	7	81	51	1	1	45	1.18
72637--72723	6	15.0	6	76	7	81	52	2	1	43	1.21
72647--72734	17	4.8	17	73	20	70	57	2	1	38	1.18
72651--72734	23	3.7	24	81	9	95	55	2	1	40	1.20
73055--73646	207	2.9	206	83	2	744	22	22	19	36	1.95
76466--76508	16	2.6	17	78	14	54	46	2	0	51	1.13
76484--76529	24	1.9	24	95	0	83	43	4	2	50	1.34
76464--76512	18	2.8	17	78	15	55	46	2	0	51	1.12
77277--77346	17	4.0	18	80	10	74	50	1	2	45	1.25
77291--77363	6	12.7	6	78	8	80	53	2	1	42	1.23
77287--77374	17	4.8	17	73	20	70	57	2	1	38	1.18
77291--77374	23	3.7	24	81	9	95	55	2	1	40	1.20
93044--93073	2	15.5	2	93	6	53	53	0	0	46	1.00
97022--97092	29	2.5	27	75	8	70	38	1	9	50	1.44
97315--97340	7	3.7	7	100	0	52	23	0	0	76	0.78
98719--98927	89	2.3	90	84	6	264	33	20	10	35	1.87
98697--98927	88	2.6	88	81	8	274	35	19	10	34	1.86
98994--99024	15	2.0	16	93	6	55	83	0	0	16	0.64
98997--99025	14	2.0	15	93	6	51	82	0	0	17	0.66
99077--99203	29	4.5	28	72	13	91	63	4	4	26	1.34
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
99411--99461	10	5.2	10	75	11	52	31	0	1	66	1.03
99432--99481	18	2.7	19	81	6	57	40	0	2	58	1.10
99399--99483	19	4.4	20	70	16	63	36	0	2	61	1.09
99615--99875	92	2.9	86	79	9	267	32	11	19	36	1.88
108397--108481	20	4.8	17	68	22	50	36	0	2	61	1.09
108433--108503	20	3.3	20	75	15	63	39	0	4	56	1.19
112032--112058	7	3.9	7	100	0	54	85	0	0	14	0.61
120035--120102	32	2.1	32	97	0	127	42	14	11	30	1.82
120198--120260	23	2.7	23	85	0	81	55	23	11	9	1.64
120257--120352	25	4.1	25	73	19	80	51	22	13	12	1.75
120256--120338	43	1.9	43	87	0	121	48	24	14	13	1.79
123355--123405	27	2.0	26	84	7	68	52	3	0	43	1.19
124535--124581	2	23.5	2	100	0	94	51	0	0	48	1.00
143403--143438	6	6.0	6	100	0	72	0	0	66	33	0.92
148668--148719	22	2.4	22	83	3	70	11	7	15	65	1.46
151018--151062	22	2.0	22	82	0	54	42	6	0	51	1.28
154047--154081	17	2.1	16	89	5	52	68	0	28	2	1.04
155438--155467	3	10.0	3	100	0	60	66	0	0	33	0.92
156056--156098	20	2.1	21	83	12	54	34	16	9	39	1.80
156128--156165	18	2.1	19	90	5	60	47	13	7	31	1.71
156166--156195	12	2.5	12	100	0	60	33	16	23	26	1.96
160662--160696	6	5.8	6	93	0	61	51	14	31	2	1.57
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
163572--163747	89	2.0	89	97	0	334	42	13	11	32	1.80
184751--184780	10	3.0	10	100	0	60	30	30	10	30	1.90
185500--185530	3	10.3	3	100	0	62	0	35	0	64	0.94
189922--189964	7	6.1	7	78	10	52	76	2	0	20	0.89
189921--189967	15	3.3	14	76	11	51	74	2	0	23	0.93
189925--189967	13	3.2	13	80	9	50	76	2	0	20	0.89
189922--189962	22	1.9	22	90	5	66	78	2	0	19	0.87
199794--199824	13	2.5	12	90	10	53	90	0	9	0	0.46
200656--200697	16	2.8	15	82	10	50	52	4	2	40	1.35
201124--201167	15	2.9	15	86	0	52	59	0	9	31	1.29
203333--203401	29	2.4	29	75	15	72	27	0	7	65	1.19
204734--204766	2	16.5	2	100	0	66	48	0	0	51	1.00
212384--212413	15	2.0	15	93	0	51	70	0	0	30	0.88
213985--214026	18	2.3	19	88	12	61	69	4	0	26	1.08
217245--217274	6	5.0	6	100	0	60	50	16	33	0	1.46
226289--226483	97	2.0	97	100	0	390	38	20	18	21	1.93
228369--228411	11	3.9	11	78	0	50	72	0	4	23	1.04
230987--231034	24	1.9	26	84	16	66	45	0	22	31	1.53
231097--231221	23	5.5	22	74	11	83	12	22	24	40	1.88

Tables:   1

The End!