genome.fa.s15280.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01015280.1 Kokia drynarioides strain JFW-HI SEQ_130325, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  250179

Tables:   1   

This is table  1  of  1  ( 108 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2794--3069	138	2.0	133	91	4	446	36	22	11	29	1.90
4296--4328	18	1.9	17	88	11	50	30	9	6	54	1.56
6690--6726	18	2.1	18	100	0	74	56	5	0	37	1.22
6679--6733	23	2.5	22	79	5	65	60	3	0	36	1.15
10644--10989	116	3.0	114	83	5	383	32	2	30	34	1.73
10677--10989	29	10.8	29	78	5	292	32	2	29	34	1.71
17101--17199	50	2.0	50	97	0	189	39	10	17	33	1.83
18316--18349	17	1.9	18	88	5	52	44	14	11	29	1.81
23150--23502	58	6.1	56	78	9	291	36	5	25	32	1.79
23231--23483	29	8.7	28	67	17	124	37	3	24	33	1.74
23179--23502	59	5.6	57	80	9	309	37	4	25	32	1.77
23411--23570	29	5.5	27	75	13	92	39	1	21	37	1.64
23411--23546	29	4.7	29	72	17	97	40	1	21	36	1.62
23232--23643	59	7.1	57	75	14	206	38	3	24	33	1.72
23411--23643	87	2.7	88	80	11	223	39	2	22	35	1.68
23179--23643	116	4.0	115	78	11	305	38	4	24	33	1.75
24788--24966	29	6.1	29	75	12	150	34	3	26	35	1.75
24748--25089	59	5.7	58	74	12	248	35	4	25	34	1.76
24932--25007	37	2.1	37	92	0	125	35	5	22	36	1.77
25019--25103	29	2.9	29	79	13	93	41	3	21	34	1.70
26176--26233	3	19.0	3	85	3	80	36	0	1	62	1.06
26205--26250	22	2.1	22	84	8	58	39	6	2	52	1.40
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26911--26990	6	13.8	6	72	12	69	50	3	3	42	1.38
28630--28808	29	6.1	29	75	12	150	34	3	26	35	1.75
28590--28931	59	5.7	58	74	12	248	35	4	25	34	1.76
28774--28849	37	2.1	37	92	0	125	35	5	22	36	1.77
28861--28945	29	2.9	29	79	13	93	41	3	21	34	1.70
30018--30075	3	19.0	3	85	3	80	36	0	1	62	1.06
30047--30092	22	2.1	22	84	8	58	39	6	2	52	1.40
30753--30832	6	13.8	6	72	12	69	50	3	3	42	1.38
33872--33934	17	3.6	18	85	4	67	47	3	1	47	1.27
34170--34203	15	2.3	15	100	0	68	23	52	14	8	1.69
34534--34802	29	9.2	29	74	11	174	33	32	4	29	1.78
34546--34801	58	4.4	57	76	11	200	34	32	3	29	1.75
34524--34704	88	2.0	89	87	3	258	34	33	3	28	1.75
34546--34801	59	4.4	57	77	11	207	34	32	3	29	1.75
34580--34922	58	5.9	56	74	12	200	32	32	5	30	1.80
34600--34923	116	2.8	118	82	7	371	31	33	5	29	1.80
41535--41599	30	2.2	30	94	0	112	58	16	3	21	1.52
43239--43283	22	2.0	22	95	0	81	68	6	11	13	1.37
46914--46946	17	1.9	17	93	0	57	57	12	0	30	1.35
46903--46947	22	2.0	24	86	8	67	57	11	0	31	1.33
50807--50838	7	4.6	7	100	0	64	0	12	31	56	1.37
51492--51576	25	3.4	25	68	12	75	38	5	4	50	1.48
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51475--51574	50	2.0	50	92	0	164	34	10	6	50	1.60
54915--54948	3	11.3	3	100	0	68	35	0	0	64	0.94
65001--65038	2	19.0	2	100	0	76	0	0	50	50	1.00
67473--67528	22	2.5	22	82	2	58	66	5	1	26	1.23
67487--67532	22	2.1	22	92	4	76	63	4	0	32	1.14
67842--67871	14	2.1	15	93	6	53	43	0	0	56	0.99
69477--69504	5	5.6	5	100	0	56	60	0	39	0	0.97
74672--74706	17	2.1	17	88	0	52	57	0	0	42	0.99
75966--75994	5	5.8	5	100	0	58	0	0	58	41	0.98
77701--77747	26	1.9	25	83	12	62	34	4	6	55	1.45
81050--81170	63	1.9	63	96	0	224	45	14	14	25	1.83
114810--114848	20	2.0	20	89	0	60	35	7	2	53	1.43
119233--119278	22	2.1	22	84	8	58	52	2	36	8	1.45
121326--121362	8	4.6	8	89	0	56	72	2	2	21	1.09
125888--125917	2	15.0	2	100	0	60	50	0	0	50	1.00
128074--128117	18	2.5	17	82	10	52	65	4	4	25	1.30
129090--129144	22	2.5	22	80	14	67	63	3	1	30	1.22
141431--141456	6	4.3	6	100	0	52	19	15	15	50	1.79
141494--141540	20	2.5	19	83	10	60	19	2	6	72	1.17
141494--141548	19	2.8	19	81	10	67	18	1	5	74	1.10
142595--142624	15	2.0	15	100	0	60	40	13	13	33	1.83
151605--151648	21	2.1	21	84	16	56	29	0	13	56	1.38
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
151605--151647	20	2.1	21	83	12	54	30	0	13	55	1.39
153326--153368	21	2.0	21	82	13	52	65	0	4	30	1.13
153621--153737	60	2.0	59	87	1	171	39	12	7	40	1.72
154787--154821	17	2.1	17	89	10	54	71	0	5	22	1.07
166480--166570	45	2.0	45	97	0	173	34	25	4	36	1.76
170011--170051	22	1.9	22	85	5	57	63	2	9	24	1.37
172397--172464	30	2.3	31	82	10	88	42	0	2	54	1.15
174279--174322	17	2.6	18	89	10	74	50	4	0	45	1.22
175017--175063	12	3.8	12	78	13	51	27	4	0	68	1.08
175025--175061	14	2.8	14	88	8	51	29	5	0	64	1.15
179948--179973	2	13.0	2	100	0	52	50	0	0	50	1.00
186384--186442	24	2.5	24	80	2	66	69	0	30	0	0.89
186383--186427	11	4.3	10	83	16	56	75	0	24	0	0.80
186571--186928	163	2.2	163	96	0	662	33	0	17	48	1.51
187294--187391	29	3.3	29	70	17	94	54	11	1	33	1.43
187294--187342	16	3.2	16	71	26	52	57	8	0	34	1.29
193116--193176	24	2.5	24	81	0	77	52	13	9	24	1.70
198844--198877	18	1.9	18	88	5	52	55	0	2	41	1.15
205203--205227	10	2.5	10	100	0	50	20	20	20	40	1.92
205536--205593	11	5.5	11	75	8	50	67	22	3	6	1.30
208049--208083	2	17.5	2	100	0	70	51	0	48	0	1.00
212215--212241	2	13.5	2	100	0	54	51	0	0	48	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
214767--214806	18	2.3	18	87	8	57	52	5	37	5	1.45
217238--217294	6	10.0	6	83	7	66	17	1	1	78	0.91
217234--217289	10	5.7	10	72	19	55	17	1	1	78	0.92
217238--217294	24	2.5	23	88	8	82	17	1	1	78	0.91
217238--217312	24	3.2	24	81	9	68	18	5	4	72	1.20
220987--221054	22	3.1	22	100	0	136	19	22	17	41	1.91
228104--228145	19	2.2	20	86	4	59	38	2	0	59	1.10
228216--228266	25	2.0	25	81	11	59	35	0	1	62	1.06
232042--232288	121	2.0	122	98	0	478	33	22	14	29	1.94
237258--237382	21	6.1	22	69	18	90	52	1	0	46	1.10
237262--237416	58	2.7	57	84	9	199	53	1	0	43	1.16
245104--245156	13	4.2	13	79	13	56	11	0	30	58	1.33
247860--247921	17	3.6	17	80	8	81	45	3	1	50	1.27
247834--247906	6	12.3	6	77	8	78	41	2	4	52	1.35
249978--250022	21	2.1	21	91	0	72	11	2	46	40	1.52
249986--250162	7	25.3	7	73	13	78	11	3	41	43	1.57
249982--250077	41	2.3	41	77	8	104	12	4	44	38	1.62
250072--250113	22	1.9	22	85	9	59	7	0	35	57	1.26
250027--250148	64	1.9	64	84	0	163	9	4	40	45	1.54
250027--250163	64	2.2	63	82	4	159	9	3	40	45	1.54

Tables:   1

The End!