genome.fa.s15283.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01015283.1 Kokia drynarioides strain JFW-HI SEQ_130328, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  430064

Tables:   1   

This is table  1  of  1  ( 104 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1945--1970	2	13.0	2	100	0	52	50	0	50	0	1.00
5247--5307	31	2.0	30	84	9	79	49	6	1	42	1.38
5749--5801	19	2.7	19	77	13	54	32	1	1	64	1.15
6558--6619	29	2.2	29	77	13	67	22	14	0	62	1.31
6701--6748	25	1.9	25	95	0	87	22	16	0	60	1.36
7543--7580	14	2.8	14	88	4	60	44	7	0	47	1.32
7543--7577	7	5.1	7	89	3	54	42	8	0	48	1.33
7678--7895	107	2.0	107	91	0	355	31	7	6	54	1.55
11506--11541	2	18.0	2	100	0	72	50	0	0	50	1.00
21422--21467	21	2.2	21	85	14	60	73	13	0	13	1.09
34906--34966	30	2.0	30	100	0	122	39	13	9	37	1.77
35619--35677	24	2.5	24	83	10	68	37	3	0	59	1.14
35669--35755	14	6.0	14	68	16	52	47	0	2	50	1.13
35674--35760	29	3.1	27	70	18	70	48	0	2	49	1.13
35702--35809	26	4.0	25	66	17	63	42	0	1	55	1.10
36810--36931	63	2.0	63	93	1	210	37	18	4	38	1.73
37050--37383	168	2.0	168	95	0	605	29	11	8	51	1.66
52265--52309	23	2.0	23	87	12	67	71	0	0	28	0.87
54209--54242	16	2.1	16	88	0	50	11	20	35	32	1.89
68124--68223	51	2.0	50	94	2	173	40	16	10	34	1.81
71595--71654	22	2.6	23	84	10	77	53	0	1	45	1.10
71587--71653	25	2.6	27	76	13	77	53	0	1	44	1.09
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
71861--71895	17	1.9	19	88	11	56	74	0	22	2	0.95
72589--72909	59	5.4	59	79	8	266	32	27	5	35	1.79
72589--72904	30	10.7	29	76	10	259	32	26	5	36	1.78
73458--73495	18	2.1	18	100	0	76	23	15	23	36	1.94
84620--85431	205	4.0	205	90	0	1196	35	20	21	22	1.96
85371--85468	37	2.7	38	85	6	139	34	18	21	25	1.96
85166--85826	242	2.7	242	88	1	961	35	19	21	23	1.96
85617--85714	37	2.6	37	91	3	153	33	20	24	21	1.97
86334--86384	17	2.9	17	82	8	59	47	0	5	47	1.26
87077--87117	3	13.7	3	100	0	82	65	0	0	34	0.93
88135--88388	29	8.8	29	78	10	227	33	28	5	32	1.79
88135--88388	30	8.7	30	78	12	246	33	28	5	32	1.79
88135--88378	59	4.2	60	79	9	238	34	28	5	31	1.80
97038--97178	72	2.0	72	98	0	273	36	9	15	38	1.81
102203--102256	25	2.2	24	87	6	81	57	1	0	40	1.09
108435--108464	2	15.0	2	100	0	60	50	0	0	50	1.00
112774--112849	38	2.0	38	100	0	152	13	21	7	57	1.60
113226--113283	27	2.0	28	84	15	75	18	15	10	55	1.68
113226--113283	30	2.0	27	87	9	80	18	15	10	55	1.68
113755--113807	16	3.1	16	75	8	52	66	5	1	26	1.25
125330--125461	65	2.0	65	94	2	230	40	15	15	28	1.88
128760--128819	31	1.9	31	82	0	75	41	10	3	45	1.54
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
133745--133784	20	2.0	20	100	0	80	30	30	10	30	1.90
135818--136021	109	1.9	109	83	3	266	40	5	9	44	1.61
149059--149106	22	2.3	22	89	7	73	35	0	6	58	1.23
149714--149755	17	2.5	17	84	7	50	40	2	2	54	1.26
150368--150409	21	2.1	20	82	8	50	61	0	11	26	1.30
156037--156094	17	3.5	17	74	11	57	53	3	5	37	1.40
156153--156201	19	2.7	18	81	6	55	38	10	0	51	1.36
159895--160347	236	1.9	237	95	1	829	31	11	11	45	1.76
167078--167134	24	2.2	26	81	9	73	28	12	7	52	1.64
167125--167187	30	2.1	30	85	5	83	26	23	7	41	1.82
168350--168409	29	2.0	30	83	6	77	48	1	30	20	1.59
170602--170668	20	3.3	20	75	22	61	47	0	0	52	1.00
186688--186961	137	2.0	137	97	0	512	28	17	23	30	1.97
188629--188670	3	14.3	3	87	5	59	0	26	0	73	0.83
192708--192737	6	5.0	6	91	0	51	0	0	13	86	0.57
192965--193026	30	2.1	30	90	0	97	45	25	6	22	1.76
195792--195940	23	6.4	24	72	13	107	12	23	19	44	1.85
195826--195941	23	5.1	22	77	12	110	12	22	19	44	1.85
195793--195942	71	2.1	69	85	7	196	12	23	18	45	1.84
196383--196456	23	3.3	22	88	3	103	35	29	22	12	1.91
198387--198458	30	2.4	31	86	6	94	20	13	18	47	1.82
199073--199158	44	2.0	44	97	2	165	52	13	2	31	1.54
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
199986--200012	10	2.7	10	100	0	54	92	0	0	7	0.38
211736--211772	18	2.1	19	85	10	51	67	5	24	2	1.25
217438--217475	5	7.6	5	87	0	58	0	23	0	76	0.79
217438--217475	15	2.5	15	100	0	76	0	23	0	76	0.79
247630--247718	23	3.9	22	82	5	97	40	19	12	28	1.87
247630--247718	45	2.0	45	84	2	115	40	19	12	28	1.87
255369--255410	22	1.9	22	85	0	57	59	2	0	38	1.10
266581--266614	18	1.9	18	88	5	52	29	11	2	55	1.50
279101--279266	85	2.0	85	100	0	332	39	20	9	30	1.85
294015--294133	23	5.3	23	84	4	136	11	21	20	46	1.82
311983--312026	21	2.2	20	87	4	61	2	18	0	79	0.83
315442--315494	24	2.2	23	80	9	61	56	3	0	39	1.17
315817--315864	24	2.0	24	84	8	62	39	0	0	60	0.97
316651--316675	13	1.9	13	100	0	50	24	0	4	72	1.02
321490--321560	31	2.3	32	80	11	85	61	2	1	33	1.19
321539--321586	9	5.2	9	75	5	51	70	2	0	27	0.98
321490--321586	15	6.5	15	73	16	76	63	3	1	31	1.16
324256--324416	23	7.0	23	79	8	141	14	21	19	44	1.86
332998--333027	2	15.0	2	100	0	60	50	0	50	0	1.00
339303--339340	7	5.4	7	84	9	51	2	13	0	84	0.73
347098--347140	2	22.0	2	95	4	79	51	0	48	0	1.00
380132--380184	28	1.9	27	88	11	81	64	1	3	30	1.22
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
380139--380184	13	3.4	14	76	11	51	65	0	4	30	1.12
393694--393730	16	2.2	17	90	4	58	45	0	2	51	1.15
395547--395596	25	2.0	25	88	0	73	78	0	22	0	0.76
395547--395594	4	11.8	4	86	4	60	79	0	20	0	0.74
395541--395591	12	4.2	12	85	5	66	80	0	17	1	0.81
395591--395627	9	4.3	9	83	10	51	54	0	45	0	1.00
396270--396380	28	3.8	28	67	17	82	55	8	1	34	1.40
396282--396404	59	2.1	59	95	0	219	53	11	1	33	1.46
396784--396820	9	4.3	9	80	13	51	0	45	0	54	1.00
396817--396859	4	10.8	4	85	9	61	0	23	0	76	0.78
396814--396870	11	4.9	11	81	12	60	1	24	0	73	0.92
397042--397107	27	2.4	27	100	0	132	13	34	19	31	1.91
402827--402861	15	2.5	14	86	13	54	40	20	8	31	1.82
402833--402863	15	2.1	15	100	0	62	41	25	6	25	1.79
414264--414302	12	3.2	12	85	0	51	43	2	7	46	1.46
417146--417192	18	2.6	19	73	10	53	55	12	2	29	1.49

Tables:   1

The End!