Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NTFQ01015287.1 Kokia drynarioides strain JFW-HI SEQ_130332, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 310313
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 691 characters in sequence are not A, C, G, or T
Found at i:706 original size:216 final size:215
Alignment explanation
Indices: 178--1817 Score: 1760
Period size: 216 Copynumber: 7.6 Consensus size: 215
168 TAATAAAGTT
* * * * * * * *
178 AGTTGTTTACAAAATGTCAAGCTATTTAGACCAAATGATACGATTTCCTGATCATGGAATGCTCG
1 AGTTATTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCA
* * * * * *
243 AAAAATTGGTCGAAGGAATGGATCATCTTGACTACTATCAGGAATCGAAGTTGTAAAAGAACTAG
66 AAAAATTGGTCGAAGGAATGGATCGTCTTGAATACTCTCAGGAACCGAAGTTATAAAAGAACTCG
* * * * * *
308 TAAATGTTTGACAAGTTCGATACTTCATCCAAGAACCAAG-GAAGAAAGAATTCTAATGTAAAAA
131 TAAATGTTTGACAAGTTCGAAAGTTCGTCCAAGAACCAAGAG-A-AAACAATTCTCACGTAAAAA
* *
372 AGTTTCTAATTCAAAGACCATA
194 AGTTTTTAATTCAAAGACCAAA
* * * *** ** *
394 ATTTATTTAC-AAATGACAAACTATTTTGACCAAATGATGAGATTTTTTGATAATGGAATCTTCA
1 AGTTATTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCA
* * * * * *
458 AAAAATTGGTCAAAGGGATGGATCGCCTTTAATACTCTCAGGAACCAAAGTTATAAAAGAACTTG
66 AAAAATTGGTCGAAGGAATGGATCGTCTTGAATACTCTCAGGAACCGAAGTTATAAAAGAACTCG
* * * * *
523 TAAAAGTTTGACTAGTTC-ATATGTTCGTCCAAGAACCAAGAGGAAAATAATTCTCACGTAAATA
131 TAAATGTTTGACAAGTTCGA-AAGTTCGTCCAAGAACCAAGA-GAAAACAATTCTCACGTAAAAA
* *
587 AGTATTTAATTCAAAGACTAAA
194 AGTTTTTAATTCAAAGACCAAA
* * ** * * * * *
609 ACTTGTACACAAAATGATAAACTATTTAAATCAAATGAAGCGATTTCCCGGGCATGGAATGTTCA
1 AGTTATTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCA
* * *
674 AAAAATTGG-CTGAAGGAATGGATCGTCTTTAATACTCTCAGGAATCGAAGTTATAAAATAACTC
66 AAAAATTGGTC-GAAGGAATGGATCGTCTTGAATACTCTCAGGAACCGAAGTTATAAAAGAACTC
* ** * * * *
738 GAAAATGTTTGACGTGTTCGAAAGTTTGTCCGAGAAGCAATTGAG-AAACAATTCTCTCGTAAAA
130 GTAAATGTTTGACAAGTTCGAAAGTTCGTCCAAGAACCAA--GAGAAAACAATTCTCACGTAAAA
802 AAGTTTTTAATTCAAAGACCAAA
193 AAGTTTTTAATTCAAAGACCAAA
* * * * *
825 AGTTGTTTACAAAATGACAAAATATTTATACCAAATGATGCAATATCCCGATG-ATGGAATGTT-
1 AGTTATTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGA-GCATGGAATGTTC
* * * **
888 AGAAAAATTGGTCGAAGAAATGGATCGTCTTGACTACTATCAGGAACCGAAGTTATAAAAGATTT
65 A-AAAAATTGGTCGAAGGAATGGATCGTCTTGAATACTCTCAGGAACCGAAGTTATAAAAGAACT
* * * * *
953 AGTAAATGTTTGACAAGTTCGGAACTTCATCCAATAACCAAGAGAGAAACAATTCTCACGT-AAA
129 CGTAAATGTTTGACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGA-AAACAATTCTCACGTAAAA
1017 AAGTTTTTAATTCAAAGACCAAA
193 AAGTTTTTAATTCAAAGACCAAA
* *
1040 AGCTT-TTTACAAAATGACAAACGT-TTTAAACCAAATGATGCGATTTCCCAAGCATGGAATGTT
1 AG-TTATTTACAAAATGACAAAC-TATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTT
* *
1103 CAAAAAATTGGTCGAAGGAATGGATCGTATTGAATACTCTCAGAAACC-AATGTTATAAAAGAAC
64 CAAAAAATTGGTCGAAGGAATGGATCGTCTTGAATACTCTCAGGAACCGAA-GTTATAAAAGAAC
* * ** *
1167 CCATAAATGTTTGACAAGTTCGAAAGTTTTTCCAAGAACCAAGAGAGAACCAATTCTCACGTAAA
128 TCGTAAATGTTTGACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGA-AAACAATTCTCACGTAAA
* *
1232 AAGGTTTTTAAATCAAAGACCAAA
192 AAAGTTTTTAATTCAAAGACCAAA
* * * * * * * * *
1256 AGTTTTTTACAACATGCCAAACTTTTTAGACCAAGTGATGCGATTTCCCAAGAATGAAATGTTCG
1 AGTTATTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCA
*** ** * * *
1321 AAAAATAAATTTAAGGAATGGATCGTAC-TAAATACTCTCAGGAACTGAAGTTATAAAAAAACTC
66 AAAAATTGGTCGAAGGAATGGATCGT-CTTGAATACTCTCAGGAACCGAAGTTATAAAAGAACTC
* *
1385 GTAAATGTTTGACAAGTTCGAAAGTTCGTCCAAGAACCAAGA-AGAAAGAATTCTAACGT-AAAA
130 GTAAATGTTTGACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGA-AAACAATTCTCACGTAAAAA
1448 AGTTTTTAATTCAAAGACCAAA
194 AGTTTTTAATTCAAAGACCAAA
* ** * *
1470 AGTTATTTACAAAATGACAAACTATTTTGACCAAATGATATGATTTCTCG-GTCATGGAATCTTC
1 AGTTATTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAG-CATGGAATGTTC
* *
1534 AAAAAATTGGTCAAAGGAATGGATCGTCTTGAATACTCTCAAGAACCGAAGTTATAAAAGAACTC
65 AAAAAATTGGTCGAAGGAATGGATCGTCTTGAATACTCTCAGGAACCGAAGTTATAAAAGAACTC
* * * * * *
1599 GTAATTGTTTAACTAGTTC-AGAAGTTTGTCCAAG-----AGAG-AAAGAATTCTAACGTAAAAA
130 GTAAATGTTTGACAAGTTCGA-AAGTTCGTCCAAGAACCAAGAGAAAACAATTCTCACGTAAAAA
*
1657 AGCTTTTAATTCAAAGACCAAA
194 AGTTTTTAATTCAAAGACCAAA
* * *
1679 AGTTATTTTCAAAATGACAAACTATTTTGACCAAATGATGCGATTTCCCG-GTCATGGAATCTTC
1 AGTTATTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAG-CATGGAATGTTC
* * * * * * *
1743 AAAAAATTGGTCAAATGAATGGATCGTCTTAAATACTCTCAAGAAGCGAAGTTGTAAAAGAAATC
65 AAAAAATTGGTCGAAGGAATGGATCGTCTTGAATACTCTCAGGAACCGAAGTTATAAAAGAACTC
1808 GTAAATGTTT
130 GTAAATGTTT
1818 TTAACCAGTT
Statistics
Matches: 1203, Mismatches: 193, Indels: 63
0.82 0.13 0.04
Matches are distributed among these distances:
208 15 0.01
209 157 0.13
213 3 0.00
214 161 0.13
215 370 0.31
216 488 0.41
217 7 0.01
218 2 0.00
ACGTcount: A:0.40, C:0.15, G:0.17, T:0.28
Consensus pattern (215 bp):
AGTTATTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCA
AAAAATTGGTCGAAGGAATGGATCGTCTTGAATACTCTCAGGAACCGAAGTTATAAAAGAACTCG
TAAATGTTTGACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAAAACAATTCTCACGTAAAAAAG
TTTTTAATTCAAAGACCAAA
Found at i:1028 original size:431 final size:430
Alignment explanation
Indices: 183--3459 Score: 3360
Period size: 431 Copynumber: 7.7 Consensus size: 430
173 AAGTTAGTTG
* * * * * *
183 TTTACAAAATGTCAAGCTATTTAGACCAAATGATA-CGATTTCCTGATCATGGAATGCTCGAAAA
1 TTTACAAAATGACAAACTATTTAGACCAAATGA-AGCGATTTCCCGAGCATGGAATGTTCAAAAA
* * * * * *
247 ATTGGTCGAAGGAATGGATCATCTTGACTACTATCAGGAATCGAAGTTGTAAAAGAACTAGTAAA
65 ATTGGTCGAAGGAATGGATCGTCTTGAATACTCTCAGGAATCGAAGTTATAAAAGAACTCGAAAA
* * ** * * *
312 TGTTTGACAAGTTCGATACTTCATCCAAGAACCAAGGAAGAAAGAATTCTAATGTAAAAAAGTTT
130 TGTTTGACAAGTTCGAAAGTTTGTCCAAGAACCAAAG-AGAAACAATTCTAACGTAAAAAAGTTT
* * * * **
377 CTAATTCAAAGACCATAATTTATTTAC-AAATGACAAACTATTTTGACCAAATGATGAGATTTTT
194 TTAATTCAAAGACCAAAAGTTATTTACAAAATGACAAACTATTTTGACCAAATGATGCGATTTCC
* * * * * *
441 TGATAATGGAATCTTCA-AAAAATTGGTCAAAGGGATGGATCGCCTTTAATACTCTCAGGAACCA
259 CGATGATGGAATCTTCAGAAAAATTGGTCAAAGGAATGGATCGTCTTAAATACTCTCAGGAACCG
* * * *
505 AAGTTATAAAAGAACTT-GTAAAAGTTTGACTAGTTCATATGTTCGTCCAAGAACCAAGAG-GAA
324 AAGTTATAAAAGAA-TTCGTAAATGTTTGACAAGTTCAGAAGTTCGTCCAAGAACCAAGAGAG-A
* *
568 AATAATTCTCACGTAAATAAGTATTTAATTCAAAGACTAAAACTT
387 AATAATTCTCACGTAAA-AAGTTTTTAATTCAAAGACCAAAACTT
** * * * *
613 GTACACAAAATGATAAACTATTTAAATCAAATGAAGCGATTTCCCGGGCATGGAATGTTCAAAAA
1 -TTTACAAAATGACAAACTATTTAGACCAAATGAAGCGATTTCCCGAGCATGGAATGTTCAAAAA
* *
678 ATTGG-CTGAAGGAATGGATCGTCTTTAATACTCTCAGGAATCGAAGTTATAAAATAACTCGAAA
65 ATTGGTC-GAAGGAATGGATCGTCTTGAATACTCTCAGGAATCGAAGTTATAAAAGAACTCGAAA
** * * * **
742 ATGTTTGACGTGTTCGAAAGTTTGTCCGAGAAGCAATTGAGAAACAATTCTCTCGTAAAAAAGTT
129 ATGTTTGACAAGTTCGAAAGTTTGTCCAAGAACCAA-AGAGAAACAATTCTAACGTAAAAAAGTT
* * * *
807 TTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAAATATTTAT-ACCAAATGATGCAATAT
193 TTTAATTCAAAGACCAAAAGTTATTTACAAAATGACAAACTATTT-TGACCAAATGATGCGATTT
* * * * * *
871 CCCGATGATGGAATGTT-AGAAAAATTGGTCGAAGAAATGGATCGTCTTGACTACTATCAGGAAC
257 CCCGATGATGGAATCTTCAGAAAAATTGGTCAAAGGAATGGATCGTCTTAAATACTCTCAGGAAC
* * * * * *
935 CGAAGTTATAAAAGATTTAGTAAATGTTTGACAAGTTCGGAACTTCATCCAATAACCAAGAGAGA
322 CGAAGTTATAAAAGAATTCGTAAATGTTTGACAAGTTCAGAAGTTCGTCCAAGAACCAAGAGAGA
*
1000 AACAATTCTCACGTAAAAAGTTTTTAATTCAAAGACCAAAAGCTT
387 AATAATTCTCACGTAAAAAGTTTTTAATTCAAAGACCAAAA-CTT
* * *
1045 TTTACAAAATGACAAACGT-TTTAAACCAAATGATGCGATTTCCCAAGCATGGAATGTTCAAAAA
1 TTTACAAAATGACAAAC-TATTTAGACCAAATGAAGCGATTTCCCGAGCATGGAATGTTCAAAAA
* * * *
1109 ATTGGTCGAAGGAATGGATCGTATTGAATACTCTCA-GAAACCAATGTTATAAAAGAAC-CCATA
65 ATTGGTCGAAGGAATGGATCGTCTTGAATACTCTCAGGAATCGAA-GTTATAAAAGAACTCGA-A
* * * *
1172 AATGTTTGACAAGTTCGAAAGTTTTTCCAAGAACCAAGAGAGAACCAATTCTCACGTAAAAAGGT
128 AATGTTTGACAAGTTCGAAAGTTTGTCCAAGAACCAA-AGAGAAACAATTCTAACGTAAAAAAGT
* * * * *
1237 TTTTAAATCAAAGACCAAAAGTTTTTTACAACATGCCAAACT-TTTTAGACCAAGTGATGCGATT
192 TTTTAATTCAAAGACCAAAAGTTATTTACAAAATGACAAACTATTTT-GACCAAATGATGCGATT
* * * *** **
1301 TCCC-AAGAATGAAATGTTC-GAAAAATAAATTTAAGGAATGGATCGTAC-TAAATACTCTCAGG
256 TCCCGATG-ATGGAATCTTCAGAAAAATTGGTCAAAGGAATGGATCGT-CTTAAATACTCTCAGG
* * *
1363 AACTGAAGTTATAAAAAAACTCGTAAATGTTTGACAAGTTC-GAAAGTTCGTCCAAGAACCAAGA
319 AACCGAAGTTATAAAAGAATTCGTAAATGTTTGACAAGTTCAG-AAGTTCGTCCAAGAACCAAGA
* * *
1427 -AGAAAGAATTCTAACGTAAAAAGTTTTTAATTCAAAGACCAAAAGTT
383 GAGAAATAATTCTCACGTAAAAAGTTTTTAATTCAAAGACCAAAACTT
* * * *
1474 ATTTACAAAATGACAAACTATTTTGACCAAATGATA-TGATTTCTCG-GTCATGGAATCTTCAAA
1 -TTTACAAAATGACAAACTATTTAGACCAAATGA-AGCGATTTCCCGAG-CATGGAATGTTCAAA
* * * *
1537 AAATTGGTCAAAGGAATGGATCGTCTTGAATACTCTCAAGAACCGAAGTTATAAAAGAACTCGTA
63 AAATTGGTCGAAGGAATGGATCGTCTTGAATACTCTCAGGAATCGAAGTTATAAAAGAACTCGAA
* * * * *
1602 ATTGTTTAACTAGTTC-AGAAGTTTGTCCAAG------AGAGAAAGAATTCTAACGTAAAAAAGC
128 AATGTTTGACAAGTTCGA-AAGTTTGTCCAAGAACCAAAGAGAAACAATTCTAACGTAAAAAAGT
*
1660 TTTTAATTCAAAGACCAAAAGTTATTTTCAAAATGACAAACTATTTTGACCAAATGATGCGATTT
192 TTTTAATTCAAAGACCAAAAGTTATTTACAAAATGACAAACTATTTTGACCAAATGATGCGATTT
* * * * *
1725 CCCGGTCATGGAATCTTCA-AAAAATTGGTCAAATGAATGGATCGTCTTAAATACTCTCAAGAAG
257 CCCGATGATGGAATCTTCAGAAAAATTGGTCAAAGGAATGGATCGTCTTAAATACTCTCAGGAAC
* * * * * * * *
1789 CGAAGTTGTAAAAGAAATCGTAAATGTTTTTAACCAGTTCAGAAGTTCGTTCAAGTATCAAGAGG
322 CGAAGTTATAAAAGAATTCGTAAATG--TTTGACAAGTTCAGAAGTTCGTCCAAGAACCAAGAGA
* * *
1854 GAAATAATTATCTCGTAAAAA------AGTT---AG--------TT
385 GAAATAATTCTCACGTAAAAAGTTTTTAATTCAAAGACCAAAACTT
* * * * * * * *
1883 GTTTACAAAATGTCAAGCTATTCAGACCAAATGATA-CGATTTCCTGATCATGGAACGCTCGAAA
1 -TTTACAAAATGACAAACTATTTAGACCAAATGA-AGCGATTTCCCGAGCATGGAATGTTCAAAA
* ** * * * * *
1947 AATTGGTCCAAGGAATGGATTATCTTGACTACTATCAGG-ATCGAAGTTGTAAAAGAACTAGTAA
64 AATTGGTCGAAGGAATGGATCGTCTTGAATACTCTCAGGAATCGAAGTTATAAAAGAACTCGAAA
* * * * * *
2011 ATGTTTGACAAGTTCGATACTTCGTCCAAGAACCAAGAGAGAAAGAATTCTAATGTCAAAAAGTT
129 ATGTTTGACAAGTTCGAAAGTTTGTCCAAGAACCAA-AGAGAAACAATTCTAACGTAAAAAAGTT
* * * * *
2076 TCTAATTCAAACACCAAAATTTATTTAC-AAATGGCAAACTATTTTGA-CAAATGATGCGATTTT
193 TTTAATTCAAAGACCAAAAGTTATTTACAAAATGACAAACTATTTTGACCAAATGATGCGATTTC
** * * *
2139 TTGATAATGGAATCTTCAG-AAAATTGGTCAAAGGGATGGATCGTCTTGAATACTCTCAGGAACC
258 CCGATGATGGAATCTTCAGAAAAATTGGTCAAAGGAATGGATCGTCTTAAATACTCTCAGGAACC
* * ** * * *
2203 AAAGTTATAAAAGAACTT-GTAAAAGTTTGAGTAGTTCATATGTTCGTCCAAGAACCAAGAGGGA
323 GAAGTTATAAAAGAA-TTCGTAAATGTTTGACAAGTTCAGAAGTTCGTCCAAGAACCAAGAGAGA
* *
2267 AATAATTCTCACGTAAATAAGTATTTAATTCAAAGACTAAAACTT
387 AATAATTCTCACGTAAA-AAGTTTTTAATTCAAAGACCAAAACTT
** * * * *
2312 GTACACAAAATGATAAACTATTTAAATCAAATGAAGCGATTTCCCGGGCATGGAATGTTCAAAAA
1 -TTTACAAAATGACAAACTATTTAGACCAAATGAAGCGATTTCCCGAGCATGGAATGTTCAAAAA
*
2377 ATTGG-CTGAAGGAATGGATCGTCTTTAATACTCTCAGGAATCGAAGTTATAAAAGAACTCGAAA
65 ATTGGTC-GAAGGAATGGATCGTCTTGAATACTCTCAGGAATCGAAGTTATAAAAGAACTCGAAA
** * * * * * ** *
2441 ATGTTTGACGTGTTCAAAAGTTTGTCCGAGAAGCAATTGACAAACAATTCTCTCGTAGAAAAGTT
129 ATGTTTGACAAGTTCGAAAGTTTGTCCAAGAACCAA-AGAGAAACAATTCTAACGTAAAAAAGTT
* * * * * *
2506 TTGAATTCAAAGAACAAAAGTTGTTTACAAAATGAAAAAATATTTAT-ACCAAATGATGCGATAT
193 TTTAATTCAAAGACCAAAAGTTATTTACAAAATGACAAACTATTT-TGACCAAATGATGCGATTT
* * * * *
2570 CCCGATGATGGAATGTT-AGAAAAATTGGTCAAAGAAATGGATCGTCTTGACTACTATCAGGAAC
257 CCCGATGATGGAATCTTCAGAAAAATTGGTCAAAGGAATGGATCGTCTTAAATACTCTCAGGAAC
* * * * * *
2634 CGAAGTTATAAAAGATTTAGTAAATGTTTGACAAGTTCGGAACTTCATCCAATAACCAAGAGAGA
322 CGAAGTTATAAAAGAATTCGTAAATGTTTGACAAGTTCAGAAGTTCGTCCAAGAACCAAGAGAGA
* *
2699 AACAATTCTCACGTAAAAAGTTTTTAACTCAAAGACCAAAAGCTT
387 AATAATTCTCACGTAAAAAGTTTTTAATTCAAAGACCAAAA-CTT
* *
2744 TTTACAAAATGACAAACGT-TTTAGACCAAATGATGCGATTTCCCAAGCATGGAATGTTCAAAAA
1 TTTACAAAATGACAAAC-TATTTAGACCAAATGAAGCGATTTCCCGAGCATGGAATGTTCAAAAA
* * * * * *
2808 ATTGGTCGAAGGAATGGATCGTATTGAATACTCTCA-TAAACCAATGTTATAAAAGAACCCAAAA
65 ATTGGTCGAAGGAATGGATCGTCTTGAATACTCTCAGGAATCGAA-GTTATAAAAGAACTCGAAA
* * * * *
2872 ATGTTTGACAAGTTCGAATGTTTTTCCAAGAACCAAGAGAGAACCAATTCTCACGTAAAAAGGTT
129 ATGTTTGACAAGTTCGAAAGTTTGTCCAAGAACCAA-AGAGAAACAATTCTAACGTAAAAAAGTT
* * * * *
2937 TTTAAATCAAAGACCAAAAGTTTTTTTTACAACATGCCAAACT-TTTTAGACCAAGTGATGCGAT
193 TTTAATTCAAAGACCAAAAG--TTATTTACAAAATGACAAACTATTTT-GACCAAATGATGCGAT
* * * ** * * *
3001 TTCCC-AAGAATGAAATGTTC-GAAAAATAAGTCGAAGGAATGGATCGTATTAAATACCCTCAGG
255 TTCCCGATG-ATGGAATCTTCAGAAAAATTGGTCAAAGGAATGGATCGTCTTAAATACTCTCAGG
* *
3064 AACTGAAGTTATAAAAGAACTCGTAAATGTTTGACAAGTTCTA-AAGTTCGTCCAAGAACCAAGA
319 AACCGAAGTTATAAAAGAATTCGTAAATGTTTGACAAGTTC-AGAAGTTCGTCCAAGAACCAAGA
* * *
3128 GAGAAAGAATTCTAACGTAAAAAGTTTTTAATTCAAAGACCAAAAGTT
383 GAGAAATAATTCTCACGTAAAAAGTTTTTAATTCAAAGACCAAAACTT
* * * * *
3176 ATTTACAAAATGACAAACTATTTTGACCAAATGATGTGATTTCTCG-GTCATGGAATCTTCAAAA
1 -TTTACAAAATGACAAACTATTTAGACCAAATGAAGCGATTTCCCGAG-CATGGAATGTTCAAAA
* * * * * *
3240 AATTAGTCAAAGGAATGGATCGTCTTGAATACTCTCAAGAACCGAAGTTATAAAATAACTCGTAA
64 AATTGGTCGAAGGAATGGATCGTCTTGAATACTCTCAGGAATCGAAGTTATAAAAGAACTCGAAA
* * * * *
3305 TTGTTTAACTAGTTC-AGAAGTTTGTCCAAG------AGAGAAAGAATTCTAACGTAAAAAAGCT
129 ATGTTTGACAAGTTCGA-AAGTTTGTCCAAGAACCAAAGAGAAACAATTCTAACGTAAAAAAGTT
* *
3363 TTTATTTCAAAGAGCAAAAGTTATTTACAAAATGACAAACTATTTTGACCAAATGATGCGATTTC
193 TTTAATTCAAAGACCAAAAGTTATTTACAAAATGACAAACTATTTTGACCAAATGATGCGATTTC
* *
3428 CCGGTCATGGAATCTTCA-AAAAATTGGTCAAA
258 CCGATGATGGAATCTTCAGAAAAATTGGTCAAA
3460 TNNNNNNNNN
Statistics
Matches: 2343, Mismatches: 413, Indels: 187
0.80 0.14 0.06
Matches are distributed among these distances:
408 44 0.02
409 86 0.04
411 46 0.02
412 2 0.00
413 88 0.04
414 19 0.01
415 49 0.02
417 2 0.00
418 3 0.00
420 3 0.00
421 2 0.00
422 1 0.00
423 145 0.06
424 62 0.03
425 32 0.01
426 58 0.02
428 2 0.00
429 87 0.04
430 280 0.12
431 725 0.31
432 300 0.13
433 302 0.13
434 5 0.00
ACGTcount: A:0.40, C:0.15, G:0.17, T:0.28
Consensus pattern (430 bp):
TTTACAAAATGACAAACTATTTAGACCAAATGAAGCGATTTCCCGAGCATGGAATGTTCAAAAAA
TTGGTCGAAGGAATGGATCGTCTTGAATACTCTCAGGAATCGAAGTTATAAAAGAACTCGAAAAT
GTTTGACAAGTTCGAAAGTTTGTCCAAGAACCAAAGAGAAACAATTCTAACGTAAAAAAGTTTTT
AATTCAAAGACCAAAAGTTATTTACAAAATGACAAACTATTTTGACCAAATGATGCGATTTCCCG
ATGATGGAATCTTCAGAAAAATTGGTCAAAGGAATGGATCGTCTTAAATACTCTCAGGAACCGAA
GTTATAAAAGAATTCGTAAATGTTTGACAAGTTCAGAAGTTCGTCCAAGAACCAAGAGAGAAATA
ATTCTCACGTAAAAAGTTTTTAATTCAAAGACCAAAACTT
Found at i:2398 original size:216 final size:214
Alignment explanation
Indices: 1879--3459 Score: 1593
Period size: 215 Copynumber: 7.4 Consensus size: 214
1869 TAAAAAAGTT
* * * * * * * * * *
1879 AGTTGTTTACAAAATGTCAAGCTATTCAGACCAAATGATACGATTTCCTGATCATGGAACGCTCG
1 AGTTATTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCA
* ** * * * * *
1944 AAAAATTGGTCCAAGGAATGGATTATCTTGACTACTATCAGG-ATCGAAGTTGTAAAAGAACTAG
66 AAAAATTGGTCAAAGGAATGGATCGTCTTGAATACTCTCAGGAACCGAAGTTATAAAAGAACTCG
* * * *
2008 TAAATGTTTGACAAGTTCGAT-ACTTCGTCCAAGAACCAAGAGAGAAAGAATTCTAATGTCAAAA
131 TAAATGTTTGACAAGTTC-ATAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGT-AAAA
*
2072 AGTTTCTAATTCAAACACCAAA
194 AGTTT-TAATTCAAAGACCAAA
* * * *** ** *
2094 ATTTATTTAC-AAATGGCAAACTATTTTGA-CAAATGATGCGATTTTTTGATAATGGAATCTTCA
1 AGTTATTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCA
* * * *
2157 GAAAATTGGTCAAAGGGATGGATCGTCTTGAATACTCTCAGGAACCAAAGTTATAAAAGAACTTG
66 AAAAATTGGTCAAAGGAATGGATCGTCTTGAATACTCTCAGGAACCGAAGTTATAAAAGAACTCG
* ** * * *
2222 TAAAAGTTTGAGTAGTTCATATGTTCGTCCAAGAACCAAGAGGGAAATAATTCTCACGTAAATAA
131 TAAATGTTTGACAAGTTCATAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAA-AA
*
2287 GTATTTAATTCAAAGACTAAA
195 GT-TTTAATTCAAAGACCAAA
* * ** * * * * *
2308 ACTTGTACACAAAATGATAAACTATTTAAATCAAATGAAGCGATTTCCCGGGCATGGAATGTTCA
1 AGTTATTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCA
* * *
2373 AAAAATTGG-CTGAAGGAATGGATCGTCTTTAATACTCTCAGGAATCGAAGTTATAAAAGAACTC
66 AAAAATTGGTC-AAAGGAATGGATCGTCTTGAATACTCTCAGGAACCGAAGTTATAAAAGAACTC
* ** * * * * ** * *
2437 GAAAATGTTTGACGTGTTCAAAAGTTTGTCCGAGAAGCAATTGACAAACAATTCTCTCGTAGAAA
130 GTAAATGTTTGACAAGTTCATAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTA-AAA
*
2502 AGTTTTGAATTCAAAGAACAAA
194 AGTTTT-AATTCAAAGACCAAA
* * * * *
2524 AGTTGTTTACAAAATGAAAAAATATTTATACCAAATGATGCGATATCCCGATG-ATGGAATGTT-
1 AGTTATTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGA-GCATGGAATGTTC
* * * **
2587 AGAAAAATTGGTCAAAGAAATGGATCGTCTTGACTACTATCAGGAACCGAAGTTATAAAAGATTT
65 A-AAAAATTGGTCAAAGGAATGGATCGTCTTGAATACTCTCAGGAACCGAAGTTATAAAAGAACT
* ** * * *
2652 AGTAAATGTTTGACAAGTTCGGAACTTCATCCAATAACCAAGAGAGAAACAATTCTCACGTAAAA
129 CGTAAATGTTTGACAAGTTCATAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAAA
*
2717 AGTTTTTAACTCAAAGACCAAA
194 AG-TTTTAATTCAAAGACCAAA
*
2739 AGCTT-TTTACAAAATGACAAACGT-TTTAGACCAAATGATGCGATTTCCCAAGCATGGAATGTT
1 AG-TTATTTACAAAATGACAAAC-TATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTT
* * **
2802 CAAAAAATTGGTCGAAGGAATGGATCGTATTGAATACTCTCATAAACC-AATGTTATAAAAGAAC
64 CAAAAAATTGGTCAAAGGAATGGATCGTCTTGAATACTCTCAGGAACCGAA-GTTATAAAAGAAC
* ** * ** *
2866 CCAAAAATGTTTGACAAGTTCGA-ATGTTTTTCCAAGAACCAAGAGAGAACCAATTCTCACGTAA
128 TCGTAAATGTTTGACAAGTTC-ATAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAA
*
2930 AAAGGTTTTTAAATCAAAGACCAAA
192 AAA-G-TTTTAATTCAAAGACCAAA
* * * * * * * *
2955 AGTTTTTTTTACAACATGCCAAACTTTTTAGACCAAGTGATGCGATTTCCCAAGAATGAAATGTT
1 AG--TTATTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTT
* ** * * * * *
3020 CGAAAAATAAGTCGAAGGAATGGATCGTATTAAATACCCTCAGGAACTGAAGTTATAAAAGAACT
64 CAAAAAATTGGTCAAAGGAATGGATCGTCTTGAATACTCTCAGGAACCGAAGTTATAAAAGAACT
* *
3085 CGTAAATGTTTGACAAGTTC-TAAAGTTCGTCCAAGAACCAAGAGAGAAAGAATTCTAACGTAAA
129 CGTAAATGTTTGACAAGTTCAT-AAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAA
3149 AAGTTTTTAATTCAAAGACCAAA
193 AAG-TTTTAATTCAAAGACCAAA
* * * *
3172 AGTTATTTACAAAATGACAAACTATTTTGACCAAATGATGTGATTTCTCG-GTCATGGAATCTTC
1 AGTTATTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAG-CATGGAATGTTC
* * *
3236 AAAAAATTAGTCAAAGGAATGGATCGTCTTGAATACTCTCAAGAACCGAAGTTATAAAATAACTC
65 AAAAAATTGGTCAAAGGAATGGATCGTCTTGAATACTCTCAGGAACCGAAGTTATAAAAGAACTC
* * * * * * *
3301 GTAATTGTTTAACTAGTTCAGAAGTT--T----G-TCCAAGAGAGAAAGAATTCTAACGTAAAAA
130 GTAAATGTTTGACAAGTTCATAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGT-AAAA
* *
3359 AGCTTTTATTTCAAAGAGCAAA
194 AG-TTTTAATTCAAAGACCAAA
* *
3381 AGTTATTTACAAAATGACAAACTATTTTGACCAAATGATGCGATTTCCCG-GTCATGGAATCTTC
1 AGTTATTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAG-CATGGAATGTTC
3445 AAAAAATTGGTCAAA
65 AAAAAATTGGTCAAA
3460 TNNNNNNNNN
Statistics
Matches: 1142, Mismatches: 195, Indels: 64
0.82 0.14 0.05
Matches are distributed among these distances:
208 24 0.02
209 100 0.09
213 67 0.06
214 108 0.09
215 329 0.29
216 323 0.28
217 29 0.03
218 160 0.14
219 2 0.00
ACGTcount: A:0.40, C:0.15, G:0.17, T:0.28
Consensus pattern (214 bp):
AGTTATTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCA
AAAAATTGGTCAAAGGAATGGATCGTCTTGAATACTCTCAGGAACCGAAGTTATAAAAGAACTCG
TAAATGTTTGACAAGTTCATAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAAAAG
TTTTAATTCAAAGACCAAA
Found at i:4825 original size:216 final size:216
Alignment explanation
Indices: 4139--8865 Score: 4861
Period size: 216 Copynumber: 22.0 Consensus size: 216
4129 NNNNNNAAAT
* * * * ** *
4139 AATTCTCACGTAAATAAGTATTTAATTCAAAGACTAAAACTTGTACACAAAATGATAAACTATTT
1 AATTCTCACGTAAAAAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTT
* * * ** * *
4204 AAATCAAATGAAGCGATTTCCCGGGCATGGAATGTTCAAAAAATTGG-CTGAAGGAATGGATCGT
66 AGACCAAATGATGCGATTTCCCGATCATGGAATGTTCGAAAAATTGGTC-AAAGGAATGGATCGT
* * * * ** * * *
4268 CTTTAATACTCTCAGGAATCGAAGTTATAAAAGAACTCGAAAATGTTTGACGTGTTCGGAATTTC
130 CTTGAATACTCTCAGGAACCGAAGTTATAAAAGAACTAGTAAATGTTTGACAAGTTCAGAAGTTA
* * *
4333 GTCCAAGAGCTAATAGAGAAAC
195 GTCCAAGAACCAAGAGAGAAAC
* *
4355 AATTCTCACGT-AAAAAGTTTTTAATTTAAAGACCAAAAGTTGTTTATAAAATGACAAACTATTT
1 AATTCTCACGTAAAAAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTT
* * * * * * * * * * ** *
4419 AGACCAAATAATGTGAATTCTC-AGCATGGAATATTTGAAAATTTGCTTAAATTAATGGATCGCC
66 AGACCAAATGATGCGATTTCCCGATCATGGAATGTTCGAAAAATTGGTCAAAGGAATGGATCGTC
* * * * * * * * *
4483 TTAAATACTTTAAGGAACCGAAGTTATAAAAGAACTTGTAAAAT-TTGGACCAGTT-TGTATGAT
131 TTGAATACTCTCAGGAACCGAAGTTATAAAAGAACTAGT-AAATGTTTGACAAGTTCAG-AAGTT
* * * *
4546 CGGCCTAGAACCAAGAGGGAAAC
194 AGTCCAAGAACCAAGAGAGAAAC
* * * *
4569 AATTCTCACGTAAAAATGTATTTAGTTCAGAG-CACAAAAGTTGTTTACAAAATGACAAACTATT
1 AATTCTCACGTAAAAAAGTTTTTAATTCAAAGAC-CAAAAGTTGTTTACAAAATGACAAACTATT
* * * *
4633 TAGACCAAATGATACGATTTCTCAATCATGGAATGTTTGAAAAATTGGTCAAAGGAATGGATCGT
65 TAGACCAAATGATGCGATTTCCCGATCATGGAATGTTCGAAAAATTGGTCAAAGGAATGGATCGT
* *
4698 CTTGACTACTATCAGGAACCGAAGTTTAATAAAAGAACTAGTAAATGTTTGACAAGTTCAGAAGT
130 CTTGAATACTCTCAGGAACCGAAG-TT-ATAAAAGAACTAGTAAATGTTTGACAAGTTCAGAAGT
* *
4763 TAGTCTAAGAACCAAGAGAGAAAG
193 TAGTCCAAGAACCAAGAGAGAAAC
* * *
4787 AATTCTAACGT-AAAAAG-TTTTAATCCAAAGACCAAAAGTTATTTACAAAATGACAAACTATTT
1 AATTCTCACGTAAAAAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTT
* * * * * * * * *
4850 TGACGAATTGATGTGATTTCCCGATCATGGAATCTTCGAAAAAATGGTCAACGAAATGGGTCGTC
66 AGACCAAATGATGCGATTTCCCGATCATGGAATGTTCGAAAAATTGGTCAAAGGAATGGATCGTC
* * * * * *
4915 TTGAATACTCTCAGGAACCGAAGTTATAATAGAACTTGTAAAAGTTTGACTAGTT-TGTA--T-G
131 TTGAATACTCTCAGGAACCGAAGTTATAAAAGAACTAGTAAATGTTTGACAAGTTCAGAAGTTAG
*
4976 TCC--G-TCCAAGA-AGGAAAC
196 TCCAAGAACCAAGAGA-GAAAC
* * *
4994 AATTCTCACGTAAATAA-TTATTTAATTCAAAGACCAAAAATTGTTTACAAAATGACAAACTTTT
1 AATTCTCACGTAAAAAAGTT-TTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATT
* * * * * * * *
5058 TTGACCAAATAATGCGATTTACCGATAATGGATTCTACGAAAAATTGGTCAAAGGAATGGATTGT
65 TAGACCAAATGATGCGATTTCCCGATCATGGAATGTTCGAAAAATTGGTCAAAGGAATGGATCGT
*
5123 CTTGAATACTCTCAGGAACCGAAGTTATGAAAGAACTCA-TAAATGTTT-ATCCAA-TTCTA-AA
130 CTTGAATACTCTCAGGAACCGAAGTTATAAAAGAACT-AGTAAATGTTTGA--CAAGTTC-AGAA
** *
5184 GTTTTTCCAAGAGCCAAGAGAGAAAC
191 GTTAGTCCAAGAACCAAGAGAGAAAC
** * *
5210 AATTCTTTCGTAATAAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAACATGACAAACTATTT
1 AATTCTCACGTAAAAAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTT
* * * * *
5275 AGACC-AATGATGTGATTTCCCGATCATGGAATGTTCGAAAAATTGGTCGAGGGAATTGATCATC
66 AGACCAAATGATGCGATTTCCCGATCATGGAATGTTCGAAAAATTGGTCAAAGGAATGGATCGTC
* * * *
5339 TTGACTACTATCAGGAACCGAAGTTATAAAAGAACTAGTAAATGTTTGACAAGTTCAGAATTTTG
131 TTGAATACTCTCAGGAACCGAAGTTATAAAAGAACTAGTAAATGTTTGACAAGTTCAGAAGTTAG
* * *
5404 TCCAAGAACGAAAAGAGAAAG
196 TCCAAGAACCAAGAGAGAAAC
* * * * * *
5425 AATTCTAATGTAAAAAAGTTTTTAATTCAATA-ACCAAAAGCTATTTATAAAATGACAAATTATT
1 AATTCTCACGTAAAAAAGTTTTTAATTCAA-AGACCAAAAGTTGTTTACAAAATGACAAACTATT
* ** * * * *
5489 TTGAAAAAATGATGCGATTTCCCAATAATGGAATCTTC-AGAAAATTGGTCAAAGAAATGGATCG
65 TAGACCAAATGATGCGATTTCCCGATCATGGAATGTTCGA-AAAATTGGTCAAAGGAATGGATCG
* * * * *
5553 TCTTGAATACTCTTAGGAACTGGAGTTATAAAAGAACTTGTAAATGTTTAACAAGTTC-GAAAGT
129 TCTTGAATACTCTCAGGAACCGAAGTTATAAAAGAACTAGTAAATGTTTGACAAGTTCAG-AAGT
* **
5617 TCGTCCAAGAACCAATTGAGAAAC
193 TAGTCCAAGAACCAAGAGAGAAAC
* *
5641 AATTCTCTCGTAAAAAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATAACAAACTATTT
1 AATTCTCACGTAAAAAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTT
* * * *
5706 AGACCAAATGATGCGATATCCCGATCATGGAATGTTCAAAAAATTGGTCGAAGAAATGGATCGTC
66 AGACCAAATGATGCGATTTCCCGATCATGGAATGTTCGAAAAATTGGTCAAAGGAATGGATCGTC
* * * ** *
5771 TTGACTACTATCAGGAACAGAAGTTATAAAAGATTTAGTAAATGTTTGACAAGTTC-GAAACTTC
131 TTGAATACTCTCAGGAACCGAAGTTATAAAAGAACTAGTAAATGTTTGACAAGTTCAG-AAGTT-
*
5835 A-TCCAAGAACCAAGAGAGAGAC
194 AGTCCAAGAACCAAGAGAGAAAC
*
5857 AATTCTCACGTAAAAAAGTTTTTAATTCAAAGACCAAAAGCTT-TTTACAAAATGACGAACGT-T
1 AATTCTCACGTAAAAAAGTTTTTAATTCAAAGACCAAAAG-TTGTTTACAAAATGACAAAC-TAT
* * * * *
5920 TTAGACCAAATGATGTGATTTCCCGAGCATGGAATGTTCAAAAAATTGGTCAAAGGAGTGGATCA
64 TTAGACCAAATGATGCGATTTCCCGATCATGGAATGTTCGAAAAATTGGTCAAAGGAATGGATCG
* * * * * * ** * *
5985 TCTTGACTACTATCTGGAACCAAAGTTATAAAAGAATTAGGAAATGTTTGACAAGTTTGGCACTT
129 TCTTGAATACTCTCAGGAACCGAAGTTATAAAAGAACTAGTAAATGTTTGACAAGTTCAGAAGTT
* *
6050 CA-TCCAAGAACCGAGAGAGAAAT
194 -AGTCCAAGAACCAAGAGAGAAAC
* * * * * * *
6073 AATTCTCACGTAATAAAGATTTTAATTCAAAGACTAAATGTTGTTTATAAAATGACAAATTGTTT
1 AATTCTCACGTAAAAAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTT
* * * * * * * * * *
6138 TGACCAAATGAAGCGATTTCCCAAGCATGGAATTTTCAAAAAATTTGTCGAAGGAATGGATCATA
66 AGACCAAATGATGCGATTTCCCGATCATGGAATGTTCGAAAAATTGGTCAAAGGAATGGATCGTC
* * *
6203 TTGAATACTCTTAGAAACCAAAGTTATAAAAGAACTCA-TAAATGTTTGACAAGTTC-GAAAGTT
131 TTGAATACTCTCAGGAACCGAAGTTATAAAAGAACT-AGTAAATGTTTGACAAGTTCAG-AAGTT
**
6266 TTTCCAAGAACCAAGAGAG-AAC
194 AGTCCAAGAACCAAGAGAGAAAC
* * * *
6288 TAATTCTCACGTAAAAAAGTTTTTAATTCAAAGACCAAAAGTTTTTTACAACATGCCAAACTTTT
1 -AATTCTCACGTAAAAAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATT
* * * * ** * ** * *
6353 TAGACCAAGTGATTCAATTTCTCGAGAATGAAATGTTCGAAAAATAAGTCGAAGAAATGGATCGT
65 TAGACCAAATGATGCGATTTCCCGATCATGGAATGTTCGAAAAATTGGTCAAAGGAATGGATCGT
* * * * * ** *
6418 ATTAAATACTCTCAGGAACTGAAGTTATTAAAGAACTCGTAAATGTTTGACAAGTTTGGAAGTTC
130 CTTGAATACTCTCAGGAACCGAAGTTATAAAAGAACTAGTAAATGTTTGACAAGTTCAGAAGTTA
*
6483 GTCCAAGAACCAAGAGAGAAAG
195 GTCCAAGAACCAAGAGAGAAAC
* * *
6505 AATTCTAACGT-AAAAAGTTTTTAATTCAAAGACCAAAAGTTATTTACAGAATGACAAACTATTT
1 AATTCTCACGTAAAAAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTT
* * * * * * * *
6569 TGACCAAATGATGTGATTTCCTGGTCTTGGAATCTTCAAAAAATTGGTCAAAGGAATGGATCATC
66 AGACCAAATGATGCGATTTCCCGATCATGGAATGTTCGAAAAATTGGTCAAAGGAATGGATCGTC
* * * * *
6634 TTGAATACTCTCAAGAACCGAAGTTATAAATGAACTCGTAAATGTTTAACCAGTTCAGAAGTTAG
131 TTGAATACTCTCAGGAACCGAAGTTATAAAAGAACTAGTAAATGTTTGACAAGTTCAGAAGTTAG
* * * * *
6699 TCGAAAAAGCAAGACAGAAAT
196 TCCAAGAACCAAGAGAGAAAC
* * *
6720 AATTCTCTCGTAAAAAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATTACGAACTATTT
1 AATTCTCACGTAAAAAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTT
* * * * * *
6785 AGACCAATTGATGCGATATCCTGATCATGGAATGTTCGAAAAGTTGGTCTAAGAAATGGATCGTC
66 AGACCAAATGATGCGATTTCCCGATCATGGAATGTTCGAAAAATTGGTCAAAGGAATGGATCGTC
* * ** * *
6850 TTGACTACTATCAGGAACCGAAGTTATAAAAGATTTAGTAAATGTTTGACAAGTTCGGAACTTCA
131 TTGAATACTCTCAGGAACCGAAGTTATAAAAGAACTAGTAAATGTTTGACAAGTTCAGAAGTT-A
6915 -TCCAAGAACCAAGAGAGAAAC
195 GTCCAAGAACCAAGAGAGAAAC
* * *
6936 AATTCTCACGTAAAAAAGTTTTTAATTCAAAGACCAAAAGCTATTTACAAAATGACGAACGT-TT
1 AATTCTCACGTAAAAAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAAC-TATT
** * *
7000 TAGACCAAATGATATGATTTCCCGAGT-ATGGAATGTTCAAAAAATTGGTCAAAGGAATGGATCA
65 TAGACCAAATGATGCGATTTCCCGA-TCATGGAATGTTCGAAAAATTGGTCAAAGGAATGGATCG
* * * * * * *
7064 TCTTGACTACTATCTA-GAACTGAAGTTATAAAAGAACTAGGAAATGTTTGACAAGTTCGGCACT
129 TCTTGAATACTCTC-AGGAACCGAAGTTATAAAAGAACTAGTAAATGTTTGACAAGTTCAGAAGT
*
7128 TCA-TCCTAGAA-CAGAGAGAGAAAC
193 T-AGTCCAAGAACCA-AGAGAGAAAC
* * * * * *
7152 AATTCTCACGTAATAAAGTTTTTAATTTAAAGACTAAATGTTGTTTATAAAATGACAAACTTTTT
1 AATTCTCACGTAAAAAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTT
* * * * * * * *
7217 AGACCAAATTATGTGATTTCCCAAGCATGGAATGTTCAAAAAATTGGTCGAAGGAATGGATTGTA
66 AGACCAAATGATGCGATTTCCCGATCATGGAATGTTCGAAAAATTGGTCAAAGGAATGGATCGTC
* * * * *
7282 TTGAATACTCTCAGAAACCAAAGTTATAAAAGAACTCGTAAATGTTTGACAAGTTCGGAAGTTTG
131 TTGAATACTCTCAGGAACCGAAGTTATAAAAGAACTAGTAAATGTTTGACAAGTTCAGAAGTTAG
*
7347 TCCAAGAACCAAGAGAGAACC
196 TCCAAGAACCAAGAGAGAAAC
* * * * *
7368 AATTCTCACGTAAAAAAGCTTTTAAATCAAAGACCAAAAGTAT-TTTACAACATGCCAAACTTTT
1 AATTCTCACGTAAAAAAGTTTTTAATTCAAAGACCAAAAGT-TGTTTACAAAATGACAAACTATT
* * * * ** **
7432 TAGACCAAGTGATGCGATTTCCCGA-GATTGAAATTTTCGAAAAATAAGTTGAAGGAATGGATCG
65 TAGACCAAATGATGCGATTTCCCGATCA-TGGAATGTTCGAAAAATTGGTCAAAGGAATGGATCG
* * * *
7496 TATTAAATACTCTTAGGAACTGAAGTTATAAAAGAACTCA-TAAATGTTTGACAAGTTC-GAAAG
129 TCTTGAATACTCTCAGGAACCGAAGTTATAAAAGAACT-AGTAAATGTTTGACAAGTTCAG-AAG
* *
7559 TTTGTCCAAGAACCAAGAGAGAAAG
192 TTAGTCCAAGAACCAAGAGAGAAAC
* * * *
7584 AATTCTAACGTAAAAAAATTTTTAATTCAAAGACCAAAAGTTTTTTATAAAATGACAAACTATTT
1 AATTCTCACGTAAAAAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTT
* * * * *
7649 TGACCAAATGATGCGATTTCCCGATCATGGAATATTCGGAAAATAGGTCAAAGGAATGGATCATC
66 AGACCAAATGATGCGATTTCCCGATCATGGAATGTTCGAAAAATTGGTCAAAGGAATGGATCGTC
* * * * * *
7714 TTGAATACTCTTAGGAACCGATGTTATAAAAGAATTCGTAAATGTTTAACAAGTTCAGAAGTTTG
131 TTGAATACTCTCAGGAACCGAAGTTATAAAAGAACTAGTAAATGTTTGACAAGTTCAGAAGTTAG
* * *
7779 TCCAAGAACTAATAGAGAAAG
196 TCCAAGAACCAAGAGAGAAAC
* * *
7800 AATTCTCACGTTAAAAAGTTTTTAATTCGAAGACCAAAAGTTGTTTACAAAATGACAAACCATTT
1 AATTCTCACGTAAAAAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTT
* * * * * ** ** *
7865 AGACCAAATGATGTGATTTCTC-AGCATGGAATATTCAAAAAATTTCTCAAATCAATGGAACGTC
66 AGACCAAATGATGCGATTTCCCGATCATGGAATGTTCGAAAAATTGGTCAAAGGAATGGATCGTC
* * * * * *
7929 TTGAATACTTTAAGGAACC-AGAGTTATAAAAGAACTTGTAAAAT-TTGGACCAA-TT-TGTATG
131 TTGAATACTCTCAGGAACCGA-AGTTATAAAAGAACTAGT-AAATGTTTGA-CAAGTTCAG-AAG
*
7990 TTCA-TCCAAGAACCAAGAGGGAAAC
192 TT-AGTCCAAGAACCAAGAGAGAAAC
* * * * * *
8015 AACTCTCACATAAAAAAGTATTTAGTTCAAAG-CACAAAAGTTGTTTACAAATTGACAAGCTATT
1 AATTCTCACGTAAAAAAGTTTTTAATTCAAAGAC-CAAAAGTTGTTTACAAAATGACAAACTATT
* *
8079 TAGACCAAATGATGCGATTTCCCGATCATGGAATGTTCGAAAAATTGGTCGAAGGAATGGATCAT
65 TAGACCAAATGATGCGATTTCCCGATCATGGAATGTTCGAAAAATTGGTCAAAGGAATGGATCGT
* * * * * * * *
8144 CATGACTACTATCAAGAACCGAAGTTATAGAAGAACTAGTAAATGTTTGGCACGTTCAGAAGTTT
130 CTTGAATACTCTCAGGAACCGAAGTTATAAAAGAACTAGTAAATGTTTGACAAGTTCAGAAGTTA
* * *
8209 TTCCAAGAACCAGGAGAGAAAG
195 GTCCAAGAACCAAGAGAGAAAC
* *
8231 AATTCTAACGTAAAAAAGTTTTTAATTCAAAGACCAAAAGTTATTTACAAAATGACAAACTATTT
1 AATTCTCACGTAAAAAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTT
** * * * * * *
8296 TCACCAAATAATACGATTTCTCGGTCATGGAATATTCAAAAAATTGGTCAAAGGAATGGATCGTC
66 AGACCAAATGATGCGATTTCCCGATCATGGAATGTTCGAAAAATTGGTCAAAGGAATGGATCGTC
* * * * * * *
8361 TTGAATACTCTCAAGAATC-AATATTATAAAAGAACTTGTAAATGTTTAACCAGTTCAGAAGTTC
131 TTGAATACTCTCAGGAACCGAA-GTTATAAAAGAACTAGTAAATGTTTGACAAGTTCAGAAGTTA
*
8425 GTCCAAGAACCAAGAGAGAAAT
195 GTCCAAGAACCAAGAGAGAAAC
* ** * *
8447 AATTCTCTCGTAAAAAAAATTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTAGTC
1 AATTCTCACGTAAAAAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTT
** * * *
8512 AGACCAAATGATAAGATTTCCTGATCATGGAATGCTCGAAAAATTGGTCGAAGGAATGGA---TC
66 AGACCAAATGATGCGATTTCCCGATCATGGAATGTTCGAAAAATTGGTCAAAGGAATGGATCGTC
* * * * *
8574 ------A-T-TCAAGAACCGTAGTTGTAAAAGAACTAGTAAATGTTTGACAAGTTC-GATACTTC
131 TTGAATACTCTCAGGAACCGAAGTTATAAAAGAACTAGTAAATGTTTGACAAGTTCAGA-AGTTA
* * *
8630 GTCCAAGAACCAAAAAAGAAAG
195 GTCCAAGAACCAAGAGAGAAAC
* * * * * * *
8652 AATTCTAATGTAAAAAAGTATTTAATTCAAAGACCAAAATTTATTTAC-TAATGGCAAACTATTT
1 AATTCTCACGTAAAAAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTT
* * * * *
8716 AGACCAAATGATGCAATTTCTCAATAATGGAATCTTC-AGAAAATTGGTCAAAGGAATGGATCGT
66 AGACCAAATGATGCGATTTCCCGATCATGGAATGTTCGA-AAAATTGGTCAAAGGAATGGATCGT
* * * * * * *
8780 CTTGAATACTCTCAGGAATCGAAGTTATAAAAGAACTTGTAAAAGTTTGACTAGTTCATATGTTC
130 CTTGAATACTCTCAGGAACCGAAGTTATAAAAGAACTAGTAAATGTTTGACAAGTTCAGAAGTTA
*
8845 GTCCAAGAACCAAGAGGGAAA
195 GTCCAAGAACCAAGAGAGAAA
8866 TAATCCTCGT
Statistics
Matches: 3748, Mismatches: 664, Indels: 199
0.81 0.14 0.04
Matches are distributed among these distances:
203 1 0.00
204 62 0.02
205 100 0.03
206 3 0.00
207 23 0.01
208 7 0.00
209 137 0.04
210 6 0.00
211 1 0.00
212 1 0.00
213 9 0.00
214 137 0.04
215 720 0.19
216 2452 0.65
217 36 0.01
218 52 0.01
219 1 0.00
ACGTcount: A:0.40, C:0.14, G:0.17, T:0.28
Consensus pattern (216 bp):
AATTCTCACGTAAAAAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTT
AGACCAAATGATGCGATTTCCCGATCATGGAATGTTCGAAAAATTGGTCAAAGGAATGGATCGTC
TTGAATACTCTCAGGAACCGAAGTTATAAAAGAACTAGTAAATGTTTGACAAGTTCAGAAGTTAG
TCCAAGAACCAAGAGAGAAAC
Found at i:6564 original size:863 final size:861
Alignment explanation
Indices: 4139--8865 Score: 5011
Period size: 863 Copynumber: 5.5 Consensus size: 861
4129 NNNNNNAAAT
* * * * ** *
4139 AATTCTCACGTAAATAAGTATTTAATTCAAAGACTAAAACTTGTACACAAAATGATAAACTATTT
1 AATTCTCACGTAAAAAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTT
* * * ** * * *
4204 AAATCAAATGAAGCGATTTCCCGGGCATGGAATGTTCAAAAAATTGG-CTGAAGGAATGGATCGT
66 AGACCAAATGATGCGATTTCCCGATCATGGAATGTTCGAAAAATTGGTC-AAAGGAATGGATCAT
* * * * * * ** *
4268 CTTTAATACTCTCAGGAATCGAAGTTATAAAAGAACTCGAAAATGTTTGACGTGTTCGGAATTTC
130 CTTGAATACTATCAGGAACCGAAGTTATAAAAGAATTAGTAAATGTTTGACAAGTTCGGAACTTC
* * * *
4333 GTCCAAGAGCTAATAGAGAAACAATTCTCACGTAAAAAGTTTTTAATTTAAAGACCAAAAGTTGT
195 GTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAAAAGTTTTTAATTCAAAGACCAAAAGTTGT
* * * * ** *
4398 TTATAAAATGACAAACTATTTAGACCAAAT-AATGTGAATTCTCAGCATGGAATATTTGAAAATT
260 TTACAAAATGACAAACTATTTAGACCAAATGAA-GTGATTTCCCAGCATGGAATGTTCAAAAAAT
* * ** ** * *
4462 TGCTTAAATTAATGGATCGCCTTAAATACTTTAAGGAACCGAAGTTATAAAAGAACTTGTAAAAT
324 TGGTCAAAGGAATGGATCATCTTGAATACTTT-AGGAACCGAAGTTATAAAAGAACTTAT-AAAT
* * * * * * ** * * * *
4527 -TTGGACCAGTTTGTATGATCGGCCTAGAACCAAGAGGGAAACAATTCTCACGTAAAAATGTATT
387 GTTTGACAAGTTCGAAAGTTCATCCAAGAACCAAGAGAGAAACAATTCTCACGTAAAAAAGTTTT
* * * * *
4591 TAGTTCAGAG-CACAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATACGATTTCT
452 TAATTCAAAGAC-CAAAAGTTGTTTACAAAATGACAAACTTTTTAGACCAAATGATGCGATTTCC
* * * * *
4655 CAATCATGGAATGTTTGAAAAATTGGTCAAAGGAATGGATCGTCTTGACTACTATCAGGAACCGA
516 CAATCATGGAATGTTCGAAAAATTGGTCGAAGGAATGGATCGTATTGAATACTCTCAGGAACCGA
* * *
4720 AGTTTAATAAAAGAACTAGTAAATGTTTGACAAGTTCAGAAGTTAGTCTAAGAACCAAGAGAGAA
581 AG-TT-ATAAAAGAACTAGTAAATGTTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAA
*
4785 AGAATTCTAACGT-AAAAAG-TTTTAATCCAAAGACCAAAAGTTATTTACAAAATGACAAACTAT
644 AGAATTCTAACGTAAAAAAGTTTTTAATTCAAAGACCAAAAGTTATTTACAAAATGACAAACTAT
* * * * * *
4848 TTTGACGAATTGATGTGATTTCCCGATCATGGAATCTTCGAAAAAA-TGGTCAACGAAATGGGTC
709 TTTGACCAAATGATGCGATTTCCCGATCATGGAATCTTC-AAAAAATTGGTCAAAGGAATGGATC
* * * * * * *
4912 GTCTTGAATACTCTCAGGAACCGAAGTTATAATAGAACTTGTAAAAGTTTGACTAGTTTGTATGT
773 GTCTTGAATACTCTCAGGAACAGAAGTTATAAAAGAACTTGTAAATGTTTGACAAGTTCGAAAGT
*
4977 CCGTCCAAG-----A-AG-GAAAC
838 TCGTCCAAGAACCAAGAGAGAAAC
* * *
4994 AATTCTCACGTAAATAA-TTATTTAATTCAAAGACCAAAAATTGTTTACAAAATGACAAACTTTT
1 AATTCTCACGTAAAAAAGTT-TTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATT
* * * * * * * **
5058 TTGACCAAATAATGCGATTTACCGATAATGGATTCTACGAAAAATTGGTCAAAGGAATGGATTGT
65 TAGACCAAATGATGCGATTTCCCGATCATGGAATGTTCGAAAAATTGGTCAAAGGAATGGATCAT
* * * ** *
5123 CTTGAATACTCTCAGGAACCGAAGTTATGAAAGAACTCA-TAAATGTTT-ATCCAA-TTCTAAAG
130 CTTGAATACTATCAGGAACCGAAGTTATAAAAGAA-TTAGTAAATGTTTGA--CAAGTTCGGAAC
** * **
5185 TTTTTCCAAGAGCCAAGAGAGAAACAATTCTTTCGTAATAAAGTTTTTAATTCAAAGACCAAAAG
192 TTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAA-AAAGTTTTTAATTCAAAGACCAAAAG
* * * *
5250 TTGTTTACAACATGACAAACTATTTAGACC-AATGATGTGATTTCCCGATCATGGAATGTTCGAA
256 TTGTTTACAAAATGACAAACTATTTAGACCAAATGAAGTGATTTCCC-AGCATGGAATGTTCAAA
* * * * *
5314 AAATTGGTCGAGGGAATTGATCATCTTGACTACTATCAGGAACCGAAGTTATAAAAGAAC-TAGT
320 AAATTGGTCAAAGGAATGGATCATCTTGAATACT-TTAGGAACCGAAGTTATAAAAGAACTTA-T
* ** * * * * *
5378 AAATGTTTGACAAGTTC-AGAATTTTGTCCAAGAACGAAAAGAGAAAGAATTCTAATGTAAAAAA
383 AAATGTTTGACAAGTTCGA-AAGTTCATCCAAGAACCAAGAGAGAAACAATTCTCACGTAAAAAA
* * * * **
5442 GTTTTTAATTCAATA-ACCAAAAGCTATTTATAAAATGACAAA-TTATTTTGAAAAAATGATGCG
447 GTTTTTAATTCAA-AGACCAAAAGTTGTTTACAAAATGACAAACTT-TTTAGACCAAATGATGCG
* * * * * *
5505 ATTTCCCAATAATGGAATCTTC-AGAAAATTGGTCAAAGAAATGGATCGTCTTGAATACTCTTAG
510 ATTTCCCAATCATGGAATGTTCGA-AAAATTGGTCGAAGGAATGGATCGTATTGAATACTCTCAG
* * * * * **
5569 GAACTGGAGTTATAAAAGAACTTGTAAATGTTTAACAAGTTCGAAAGTTCGTCCAAGAACCAATT
574 GAACCGAAGTTATAAAAGAACTAGTAAATGTTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGA
* ** * *
5634 GAGAAACAATTCTCTCGTAAAAAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATAACAA
639 GAGAAAGAATTCTAACGTAAAAAAGTTTTTAATTCAAAGACCAAAAGTTATTTACAAAATGACAA
* * * * *
5699 ACTATTTAGACCAAATGATGCGATATCCCGATCATGGAATGTTCAAAAAATTGGTCGAAGAAATG
704 ACTATTTTGACCAAATGATGCGATTTCCCGATCATGGAATCTTCAAAAAATTGGTCAAAGGAATG
* * *
5764 GATCGTCTTGACTACTATCAGGAACAGAAGTTATAAAAG-ATTTAGTAAATGTTTGACAAGTTCG
769 GATCGTCTTGAATACTCTCAGGAACAGAAGTTATAAAAGAACTT-GTAAATGTTTGACAAGTTCG
* * *
5828 AAACTTCATCCAAGAACCAAGAGAGAGAC
833 AAAGTTCGTCCAAGAACCAAGAGAGAAAC
*
5857 AATTCTCACGTAAAAAAGTTTTTAATTCAAAGACCAAAAGCTT-TTTACAAAATGACGAACGT-T
1 AATTCTCACGTAAAAAAGTTTTTAATTCAAAGACCAAAAG-TTGTTTACAAAATGACAAAC-TAT
* * * *
5920 TTAGACCAAATGATGTGATTTCCCGAGCATGGAATGTTCAAAAAATTGGTCAAAGGAGTGGATCA
64 TTAGACCAAATGATGCGATTTCCCGATCATGGAATGTTCGAAAAATTGGTCAAAGGAATGGATCA
* * * * * *
5985 TCTTGACTACTATCTGGAACCAAAGTTATAAAAGAATTAGGAAATGTTTGACAAGTTTGGCACTT
129 TCTTGAATACTATCAGGAACCGAAGTTATAAAAGAATTAGTAAATGTTTGACAAGTTCGGAACTT
* * * * * *
6050 CATCCAAGAACCGAGAGAGAAATAATTCTCACGTAATAAAGATTTTAATTCAAAGACTAAATGTT
194 CGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAA-AAAGTTTTTAATTCAAAGACCAAAAGTT
* * * * * *
6115 GTTTATAAAATGACAAATTGTTTTGACCAAATGAAGCGATTTCCCAAGCATGGAATTTTCAAAAA
258 GTTTACAAAATGACAAACTATTTAGACCAAATGAAGTGATTTCCC-AGCATGGAATGTTCAAAAA
* * * * * *
6180 ATTTGTCGAAGGAATGGATCATATTGAATACTCTTAGAAACCAAAGTTATAAAAGAACTCATAAA
322 ATTGGTCAAAGGAATGGATCATCTTGAATACT-TTAGGAACCGAAGTTATAAAAGAACTTATAAA
**
6245 TGTTTGACAAGTTCGAAAGTTTTTCCAAGAACCAAGAGAG-AACTAATTCTCACGTAAAAAAGTT
386 TGTTTGACAAGTTCGAAAGTTCATCCAAGAACCAAGAGAGAAAC-AATTCTCACGTAAAAAAGTT
* * * * * *
6309 TTTAATTCAAAGACCAAAAGTTTTTTACAACATGCCAAACTTTTTAGACCAAGTGATTCAATTTC
450 TTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTTTTTAGACCAAATGATGCGATTTC
* * ** * ** * * *
6374 TCGAGAATGAAATGTTCGAAAAATAAGTCGAAGAAATGGATCGTATTAAATACTCTCAGGAACTG
515 CCAATCATGGAATGTTCGAAAAATTGGTCGAAGGAATGGATCGTATTGAATACTCTCAGGAACCG
* * *
6439 AAGTTATTAAAGAACTCGTAAATGTTTGACAAGTTTGGAAGTTCGTCCAAGAACCAAGAGAGAAA
580 AAGTTATAAAAGAACTAGTAAATGTTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAA
*
6504 GAATTCTAACGT-AAAAAGTTTTTAATTCAAAGACCAAAAGTTATTTACAGAATGACAAACTATT
645 GAATTCTAACGTAAAAAAGTTTTTAATTCAAAGACCAAAAGTTATTTACAAAATGACAAACTATT
* * * * *
6568 TTGACCAAATGATGTGATTTCCTGGTCTTGGAATCTTCAAAAAATTGGTCAAAGGAATGGATCAT
710 TTGACCAAATGATGCGATTTCCCGATCATGGAATCTTCAAAAAATTGGTCAAAGGAATGGATCGT
* * * * * *
6633 CTTGAATACTCTCAAGAACCGAAGTTATAAATGAACTCGTAAATGTTTAACCAGTTC-AGAAGTT
775 CTTGAATACTCTCAGGAACAGAAGTTATAAAAGAACTTGTAAATGTTTGACAAGTTCGA-AAGTT
* * * * * *
6697 AGTCGAAAAAGCAAGACAGAAAT
839 CGTCCAAGAACCAAGAGAGAAAC
* * *
6720 AATTCTCTCGTAAAAAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATTACGAACTATTT
1 AATTCTCACGTAAAAAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTT
* * * * * * *
6785 AGACCAATTGATGCGATATCCTGATCATGGAATGTTCGAAAAGTTGGTCTAAGAAATGGATCGTC
66 AGACCAAATGATGCGATTTCCCGATCATGGAATGTTCGAAAAATTGGTCAAAGGAATGGATCATC
* * *
6850 TTGACTACTATCAGGAACCGAAGTTATAAAAGATTTAGTAAATGTTTGACAAGTTCGGAACTTCA
131 TTGAATACTATCAGGAACCGAAGTTATAAAAGAATTAGTAAATGTTTGACAAGTTCGGAACTTCG
* *
6915 TCCAAGAACCAAGAGAGAAACAATTCTCACGTAAAAAAGTTTTTAATTCAAAGACCAAAAGCTAT
196 TCCAAGAACCAAGAGAGAAACAATTCTCACGT-AAAAAGTTTTTAATTCAAAGACCAAAAGTTGT
* *
6980 TTACAAAATGACGAACGT-TTTAGACCAAATGATA-TGATTTCCCGAGTATGGAATGTTCAAAAA
260 TTACAAAATGACAAAC-TATTTAGACCAAATGA-AGTGATTTCCC-AGCATGGAATGTTCAAAAA
* * *
7043 ATTGGTCAAAGGAATGGATCATCTTGACTACTATCTA-GAACTGAAGTTATAAAAGAAC-TAGGA
322 ATTGGTCAAAGGAATGGATCATCTTGAATACT-T-TAGGAACCGAAGTTATAAAAGAACTTA-TA
** * * *
7106 AATGTTTGACAAGTTCGGCACTTCATCCTAGAA-CAGAGAGAGAAACAATTCTCACGTAATAAAG
384 AATGTTTGACAAGTTCGAAAGTTCATCCAAGAACCA-AGAGAGAAACAATTCTCACGTAAAAAAG
* * * * * *
7170 TTTTTAATTTAAAGACTAAATGTTGTTTATAAAATGACAAACTTTTTAGACCAAATTATGTGATT
448 TTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTTTTTAGACCAAATGATGCGATT
* * * *
7235 TCCCAAGCATGGAATGTTCAAAAAATTGGTCGAAGGAATGGATTGTATTGAATACTCTCAGAAAC
513 TCCCAATCATGGAATGTTCGAAAAATTGGTCGAAGGAATGGATCGTATTGAATACTCTCAGGAAC
* * *
7300 CAAAGTTATAAAAGAACTCGTAAATGTTTGACAAGTTCGGAAGTTTGTCCAAGAACCAAGAGAGA
578 CGAAGTTATAAAAGAACTAGTAAATGTTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGA
** * * * * *
7365 ACCAATTCTCACGTAAAAAAGCTTTTAAATCAAAGACCAAAAG-TATTTTACAACATGCCAAACT
643 AAGAATTCTAACGTAAAAAAGTTTTTAATTCAAAGACCAAAAGTTA-TTTACAAAATGACAAACT
* * * * * ** **
7429 -TTTTAGACCAAGTGATGCGATTTCCCGA-GATTGAAATTTTCGAAAAATAAGTTGAAGGAATGG
707 ATTTT-GACCAAATGATGCGATTTCCCGATCA-TGGAATCTTCAAAAAATTGGTCAAAGGAATGG
* * * * **
7492 ATCGTATTAAATACTCTTAGGAACTGAAGTTATAAAAGAACTCATAAATGTTTGACAAGTTCGAA
770 ATCGTCTTGAATACTCTCAGGAACAGAAGTTATAAAAGAACTTGTAAATGTTTGACAAGTTCGAA
* *
7557 AGTTTGTCCAAGAACCAAGAGAGAAAG
835 AGTTCGTCCAAGAACCAAGAGAGAAAC
* * * *
7584 AATTCTAACGTAAAAAAATTTTTAATTCAAAGACCAAAAGTTTTTTATAAAATGACAAACTATTT
1 AATTCTCACGTAAAAAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTT
* * * *
7649 TGACCAAATGATGCGATTTCCCGATCATGGAATATTCGGAAAATAGGTCAAAGGAATGGATCATC
66 AGACCAAATGATGCGATTTCCCGATCATGGAATGTTCGAAAAATTGGTCAAAGGAATGGATCATC
* * * * * * * *
7714 TTGAATACTCTTAGGAACCGATGTTATAAAAGAATTCGTAAATGTTTAACAAGTTCAGAAGTTTG
131 TTGAATACTATCAGGAACCGAAGTTATAAAAGAATTAGTAAATGTTTGACAAGTTCGGAACTTCG
* * * *
7779 TCCAAGAACTAATAGAGAAAGAATTCTCACGTTAAAAAGTTTTTAATTCGAAGACCAAAAGTTGT
196 TCCAAGAACCAAGAGAGAAACAATTCTCACG-TAAAAAGTTTTTAATTCAAAGACCAAAAGTTGT
* * * *
7844 TTACAAAATGACAAACCATTTAGACCAAATGATGTGATTTCTCAGCATGGAATATTCAAAAAATT
260 TTACAAAATGACAAACTATTTAGACCAAATGAAGTGATTTCCCAGCATGGAATGTTCAAAAAATT
** ** * * *
7909 TCTCAAATCAATGGAACGTCTTGAATACTTTAAGGAACC-AGAGTTATAAAAGAACTTGTAAAAT
325 GGTCAAAGGAATGGATCATCTTGAATACTTT-AGGAACCGA-AGTTATAAAAGAACTTAT-AAAT
* * * * * * * *
7973 -TTGGACCAA-TTTGTATGTTCATCCAAGAACCAAGAGGGAAACAACTCTCACATAAAAAAGTAT
387 GTTTGA-CAAGTTCGAAAGTTCATCCAAGAACCAAGAGAGAAACAATTCTCACGTAAAAAAGTTT
* * * *
8036 TTAGTTCAAAG-CACAAAAGTTGTTTACAAATTGACAAGCTATTTAGACCAAATGATGCGATTTC
451 TTAATTCAAAGAC-CAAAAGTTGTTTACAAAATGACAAACTTTTTAGACCAAATGATGCGATTTC
* * * * *
8100 CCGATCATGGAATGTTCGAAAAATTGGTCGAAGGAATGGATCATCA-TGACTACTATCAAGAACC
515 CCAATCATGGAATGTTCGAAAAATTGGTCGAAGGAATGGATCGT-ATTGAATACTCTCAGGAACC
* * * * ** *
8164 GAAGTTATAGAAGAACTAGTAAATGTTTGGCACGTTCAGAAGTTTTTCCAAGAACCAGGAGAGAA
579 GAAGTTATAAAAGAACTAGTAAATGTTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAA
8229 AGAATTCTAACGTAAAAAAGTTTTTAATTCAAAGACCAAAAGTTATTTACAAAATGACAAACTAT
644 AGAATTCTAACGTAAAAAAGTTTTTAATTCAAAGACCAAAAGTTATTTACAAAATGACAAACTAT
* * * * * *
8294 TTTCACCAAATAATACGATTTCTCGGTCATGGAATATTCAAAAAATTGGTCAAAGGAATGGATCG
709 TTTGACCAAATGATGCGATTTCCCGATCATGGAATCTTCAAAAAATTGGTCAAAGGAATGGATCG
* * *
8359 TCTTGAATACTCTCAAGAATCA-ATA-TTATAAAAGAACTTGTAAATGTTTAACCAGTTC-AGAA
774 TCTTGAATACTCTCAGGAA-CAGA-AGTTATAAAAGAACTTGTAAATGTTTGACAAGTTCGA-AA
*
8421 GTTCGTCCAAGAACCAAGAGAGAAAT
836 GTTCGTCCAAGAACCAAGAGAGAAAC
* ** * *
8447 AATTCTCTCGTAAAAAAAATTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTAGTC
1 AATTCTCACGTAAAAAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTT
** * * *
8512 AGACCAAATGATAAGATTTCCTGATCATGGAATGCTCGAAAAATTGGTCGAAGGAATGGATCA--
66 AGACCAAATGATGCGATTTCCCGATCATGGAATGTTCGAAAAATTGGTCAAAGGAATGGATCATC
* * *
8575 -T---T-C-A--A-GAACCGTAGTTGTAAAAGAACTAGTAAATGTTTGACAAGTTC-GATACTTC
131 TTGAATACTATCAGGAACCGAAGTTATAAAAGAATTAGTAAATGTTTGACAAGTTCGGA-ACTTC
* * * * * * * *
8630 GTCCAAGAACCAAAAAAGAAAGAATTCTAATGTAAAAAAGTATTTAATTCAAAGACCAAAATTTA
195 GTCCAAGAACCAAGAGAGAAACAATTCTCACGT-AAAAAGTTTTTAATTCAAAGACCAAAAGTTG
* * * ** * ** * *
8695 TTTAC-TAATGGCAAACTATTTAGACCAAATGATGCAATTTCTCAATAATGGAATCTTCAGAAAA
259 TTTACAAAATGACAAACTATTTAGACCAAATGAAGTGATTTC-CCAGCATGGAATGTTCAAAAAA
* * * * *
8759 TTGGTCAAAGGAATGGATCGTCTTGAATACTCTCAGGAATCGAAGTTATAAAAGAACTTGTAAAA
323 TTGGTCAAAGGAATGGATCATCTTGAATACT-TTAGGAACCGAAGTTATAAAAGAACTTATAAAT
* * * *
8824 GTTTGACTAGTTC-ATATGTTCGTCCAAGAACCAAGAGGGAAA
387 GTTTGACAAGTTCGA-AAGTTCATCCAAGAACCAAGAGAGAAA
8866 TAATCCTCGT
Statistics
Matches: 3226, Mismatches: 564, Indels: 167
0.82 0.14 0.04
Matches are distributed among these distances:
851 39 0.01
852 196 0.06
853 3 0.00
854 63 0.02
855 215 0.07
856 411 0.13
857 4 0.00
860 1 0.00
861 2 0.00
862 19 0.01
863 1508 0.47
864 758 0.23
865 7 0.00
ACGTcount: A:0.40, C:0.14, G:0.17, T:0.28
Consensus pattern (861 bp):
AATTCTCACGTAAAAAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTT
AGACCAAATGATGCGATTTCCCGATCATGGAATGTTCGAAAAATTGGTCAAAGGAATGGATCATC
TTGAATACTATCAGGAACCGAAGTTATAAAAGAATTAGTAAATGTTTGACAAGTTCGGAACTTCG
TCCAAGAACCAAGAGAGAAACAATTCTCACGTAAAAAGTTTTTAATTCAAAGACCAAAAGTTGTT
TACAAAATGACAAACTATTTAGACCAAATGAAGTGATTTCCCAGCATGGAATGTTCAAAAAATTG
GTCAAAGGAATGGATCATCTTGAATACTTTAGGAACCGAAGTTATAAAAGAACTTATAAATGTTT
GACAAGTTCGAAAGTTCATCCAAGAACCAAGAGAGAAACAATTCTCACGTAAAAAAGTTTTTAAT
TCAAAGACCAAAAGTTGTTTACAAAATGACAAACTTTTTAGACCAAATGATGCGATTTCCCAATC
ATGGAATGTTCGAAAAATTGGTCGAAGGAATGGATCGTATTGAATACTCTCAGGAACCGAAGTTA
TAAAAGAACTAGTAAATGTTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAAGAATTC
TAACGTAAAAAAGTTTTTAATTCAAAGACCAAAAGTTATTTACAAAATGACAAACTATTTTGACC
AAATGATGCGATTTCCCGATCATGGAATCTTCAAAAAATTGGTCAAAGGAATGGATCGTCTTGAA
TACTCTCAGGAACAGAAGTTATAAAAGAACTTGTAAATGTTTGACAAGTTCGAAAGTTCGTCCAA
GAACCAAGAGAGAAAC
Found at i:9466 original size:35 final size:36
Alignment explanation
Indices: 9427--9496 Score: 90
Period size: 35 Copynumber: 1.9 Consensus size: 36
9417 CACGTTTAAT
9427 TTTTCTATCTTT-TTTT-CTTCCTTTTCATCTTTTTC
1 TTTTCTATCTTTCTTTTACTTCCTTTTC-TCTTTTTC
* *
9462 TTTTCTCTCTTTCTTTTCACTTTCTTTTCTCTTTT
1 TTTTCTATCTTTCTTTT-ACTTCCTTTTCTCTTTT
9497 CTCTCATTTT
Statistics
Matches: 30, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
35 11 0.37
36 4 0.13
37 6 0.20
38 9 0.30
ACGTcount: A:0.04, C:0.24, G:0.00, T:0.71
Consensus pattern (36 bp):
TTTTCTATCTTTCTTTTACTTCCTTTTCTCTTTTTC
Found at i:9476 original size:13 final size:13
Alignment explanation
Indices: 9442--9498 Score: 57
Period size: 12 Copynumber: 4.5 Consensus size: 13
9432 TATCTTTTTT
*
9442 TCTTCCTTTTCATC
1 TCTTTCTTTTC-TC
*
9456 TTTTTCTTTTCTC
1 TCTTTCTTTTCTC
9469 TCTTTC-TTT-TC
1 TCTTTCTTTTCTC
*
9480 ACTTTCTTTTCTC
1 TCTTTCTTTTCTC
9493 T-TTTCT
1 TCTTTCT
9499 CTCATTTTTC
Statistics
Matches: 36, Mismatches: 5, Indels: 6
0.77 0.11 0.13
Matches are distributed among these distances:
11 7 0.19
12 11 0.31
13 9 0.25
14 9 0.25
ACGTcount: A:0.04, C:0.28, G:0.00, T:0.68
Consensus pattern (13 bp):
TCTTTCTTTTCTC
Found at i:9507 original size:29 final size:29
Alignment explanation
Indices: 9454--9518 Score: 80
Period size: 31 Copynumber: 2.2 Consensus size: 29
9444 TTCCTTTTCA
*
9454 TCTTTTTCTTTTCTCTCTTTCTTTTCACTT
1 TCTTTTTCTTTTCTCTCTATCTTTTC-CTT
9484 TCTTTTCTCTTTTCTCTC-AT-TTTTCCTT
1 TCTTTT-TCTTTTCTCTCTATCTTTTCCTT
*
9512 TATTTTT
1 TCTTTTT
9519 TTCAATTTTC
Statistics
Matches: 32, Mismatches: 2, Indels: 5
0.82 0.05 0.13
Matches are distributed among these distances:
27 1 0.03
28 8 0.25
29 5 0.16
30 7 0.22
31 11 0.34
ACGTcount: A:0.05, C:0.25, G:0.00, T:0.71
Consensus pattern (29 bp):
TCTTTTTCTTTTCTCTCTATCTTTTCCTT
Found at i:9512 original size:24 final size:25
Alignment explanation
Indices: 9456--9508 Score: 67
Period size: 24 Copynumber: 2.2 Consensus size: 25
9446 CCTTTTCATC
*
9456 TTTTTCTTTTCTCTCTTTCTTTTCA
1 TTTTTCTTTTCTCTCTTTCTTCTCA
*
9481 -CTTTCTTTTCTCT-TTTC-TCTCA
1 TTTTTCTTTTCTCTCTTTCTTCTCA
9503 TTTTTC
1 TTTTTC
9509 CTTTATTTTT
Statistics
Matches: 24, Mismatches: 3, Indels: 4
0.77 0.10 0.13
Matches are distributed among these distances:
22 4 0.17
23 8 0.33
24 12 0.50
ACGTcount: A:0.04, C:0.26, G:0.00, T:0.70
Consensus pattern (25 bp):
TTTTTCTTTTCTCTCTTTCTTCTCA
Found at i:13006 original size:216 final size:216
Alignment explanation
Indices: 12620--14533 Score: 2217
Period size: 216 Copynumber: 8.9 Consensus size: 216
12610 TAAATGATTG
* * * * *
12620 AAAAATTGCTCAAAGGAATGGATCATCTTGAATACTTTAAGGGACCGAAGTTATAAAAGAACTTA
1 AAAAATTGGTCAAAGGAATGGATCGTCTTGAATACTATCAGGAACCGAAGTTATAAAAGAAC-TA
* * * * * * *
12685 -TAAAAT-TTTGACTAGTTTGTATGTTAGTCCAAGAACCAAGAGGGAAACAATTTTCACGTAAAA
65 GT-AAATGTTTGACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAAA
* * * * * *
12748 AAGTGTTTAATTCAAAG-CAAAATACTTGTTCACAAAATGACAAATTATTTTGACCAAATGATGT
129 AAGTTTTTAATTCAAAGACCAAA-AGTTGTTTACAAAATGACAAACTATTTTGACCAAATGATGC
* *
12812 GATTTCCTGATCATGGAATGTTCG
193 GATTTCCCGATCATGGAATGTTCA
* * * * * * *
12836 ACAAATTGGTCGAAGGAATGGATCATCTTGACTACTATCAGTAACTGAAGTTATCAAAGAACTAG
1 AAAAATTGGTCAAAGGAATGGATCGTCTTGAATACTATCAGGAACCGAAGTTATAAAAGAACTAG
* * *
12901 -AAATTTTTGACAAGTTCGAAACTTCGTCCAAGAACCGAGAGAGAAACAATTCTCACGTAAAAAA
66 TAAATGTTTGACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGT-AAAAA
* *
12965 AGTTTTTAATTTAAAGACCAAAAGCTT-TTTACAAAATGACAAACGT-TTTAGACCAAATGATGC
130 AGTTTTTAATTCAAAGACCAAAAG-TTGTTTACAAAATGACAAAC-TATTTTGACCAAATGATGC
* * * *
13028 GATTTCTCGAGCATGGAAAGTTCG
193 GATTTCCCGATCATGGAATGTTCA
* * *
13052 AAAAATTGGTCAAAGGAATGGATCATCTTGACTACTATCTGGAACCGAAGTTATAAAAGAACTAG
1 AAAAATTGGTCAAAGGAATGGATCGTCTTGAATACTATCAGGAACCGAAGTTATAAAAGAACTAG
** * * * * **
13117 TAAATGTTTGACAAGTTCGGCACTTCGTCCAAGAACCGAGAGAGAAATAATTCTCACATAACTAA
66 TAAATGTTTGACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAAAAA
* * * *
13182 GCTTTTAATTCAAAGACCAAATGTTGTTTACAAAATGACAAACT-TTCTAGACCAAATGATGTGA
131 GTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATT-TTGACCAAATGATGCGA
* * *
13246 TTTCCCGAGCATGAAATGTTAA
195 TTTCCCGATCATGGAATGTTCA
* * * *
13268 AAAAATTGGTCGAAGGAATGGATCGTCTTGAATACTCTCAGAAACCGAAGTTATAAAAGAATTCA
1 AAAAATTGGTCAAAGGAATGGATCGTCTTGAATACTATCAGGAACCGAAGTTATAAAAGAACT-A
* * * * *
13333 -TAAAGGTTTGACAAGTT-AAGAAGTTCATCCAAGAACCAAGAGAGAAATAATTCTCACGTAAAC
65 GTAAATGTTTGACAAGTTCGA-AAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAAA
* * * * * ** * * * *
13396 AAGTGTTTAAATGAAAGACCTAAAGCTGTTTATGACATGGCAAACTATTTTGATCAAATGATACG
129 AAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTTGACCAAATGATGCG
** * *
13461 A-TTCCTCGGGCATGGATTGTTCG
194 ATTTCC-CGATCATGGAATGTTCA
* * * * * *
13484 AAAAATTGGTCGAAGGAATGGATCGTCTTAAATACTCTCAGGAACCAAAGTTACAAAAGAACTCG
1 AAAAATTGGTCAAAGGAATGGATCGTCTTGAATACTATCAGGAACCGAAGTTATAAAAGAACTAG
* * * *
13549 TAAATGTTTGACAAGTTTGAAAGTTCATCCAAGAACCAAGAGAGAAAGAATTCTAACGTAAAAAA
66 TAAATGTTTGACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAAAAA
* * * * *
13614 TTTTTTAATTCAAAGACCAAAAGTTATTCACAAAATGACTAACTATTTTGACCAAATAATGCGAT
131 GTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTTGACCAAATGATGCGAT
* * * *
13679 TTCTCGATAATGGAGTCTTCA
196 TTCCCGATCATGGAATGTTCA
* * *
13700 AAAAATTGGTCAAAGGAATGGATCGTCTTGAATACTCTCAGGAACCGAAGTTATGAAAGAACTCG
1 AAAAATTGGTCAAAGGAATGGATCGTCTTGAATACTATCAGGAACCGAAGTTATAAAAGAACTAG
* * * * **
13765 TAAATGTTTAACCAA-TTCGGAAGTTTGTCCAAGAGCCAAGAGAGAAACAATTCTTTCGTAAAAA
66 TAAATGTTTGA-CAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAAAA
* * *
13829 AGTTTTTAATTCAAATACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGTGA
130 AGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTTGACCAAATGATGCGA
*
13894 TTTCCCGATCATAGAATGTTCA
195 TTTCCCGATCATGGAATGTTCA
* * * *
13916 AAAAATTGGT-TAAGAGAATGGA---TCTTGACTATTATCAAGAACCGAAGTTATAAAAGAACTA
1 AAAAATTGGTCAAAG-GAATGGATCGTCTTGAATACTATCAGGAACCGAAGTTATAAAAGAACTA
** *
13977 GTAAATGTTTGACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAAAGGATTCTAACGTAAAAA
65 GTAAATGTTTGACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAAAA
* * * * *
14042 AGTTTTTAATTCAAAAACCAAAAGCTATTTACAAAATGACAAATTATTTT-TCCAAATGATGCGA
130 AGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTTGACCAAATGATGCGA
* * *
14106 TTTCCCAATAATGGAATCTTCA
195 TTTCCCGATCATGGAATGTTCA
* * * * *
14128 AAAAATTGGTCAAAGGAATGGATCGTCTTGAATACTCTAAGGAATCGGAGTTATAAAAGAACTTG
1 AAAAATTGGTCAAAGGAATGGATCGTCTTGAATACTATCAGGAACCGAAGTTATAAAAGAACTAG
* * * ** *
14193 TAAATGTTTAACAAGTTCAAAAGTTCATCCAAGAACCAATTGAGAAACAATTCTCTCGTAAAAAA
66 TAAATGTTTGACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAAAAA
* *
14258 GTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATCATGCGAT
131 GTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTTGACCAAATGATGCGAT
* *
14323 ATCCCGATCATGGAATGTTCG
196 TTCCCGATCATGGAATGTTCA
* * * * * **
14344 AAAAATTGGTCGAAGAAATGGATCGTCTTGACTACTATCAAGAACTGAAGTTATAAAAGATTTAG
1 AAAAATTGGTCAAAGGAATGGATCGTCTTGAATACTATCAGGAACCGAAGTTATAAAAGAACTAG
* * * *
14409 TAAATGTTTGACAAGTTCGAAACTTAGTCCAAGAACCAAGAGAGAAAGAATTCTAACGT-AAAAA
66 TAAATGTTTGACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAAAAA
* *
14473 G-TTTTAATTCAAAGACTAAAAGTTATTTACAAAATGACAAACTATTTTGACCAAATGATGC
131 GTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTTGACCAAATGATGC
14534 TGATATGAGC
Statistics
Matches: 1441, Mismatches: 233, Indels: 50
0.84 0.14 0.03
Matches are distributed among these distances:
212 50 0.03
213 134 0.09
214 60 0.04
215 196 0.14
216 931 0.65
217 70 0.05
ACGTcount: A:0.40, C:0.15, G:0.17, T:0.28
Consensus pattern (216 bp):
AAAAATTGGTCAAAGGAATGGATCGTCTTGAATACTATCAGGAACCGAAGTTATAAAAGAACTAG
TAAATGTTTGACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAAAAA
GTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTTGACCAAATGATGCGAT
TTCCCGATCATGGAATGTTCA
Found at i:15105 original size:80 final size:79
Alignment explanation
Indices: 14961--15117 Score: 251
Period size: 80 Copynumber: 2.0 Consensus size: 79
14951 ACTAATTTCA
* * *
14961 TTTTAGCTCTTGTAGGAAAGCTAATGAGTCATGTCTCTTCATTAGGATCTGAAGTAGTTAAAAAG
1 TTTTAACTCTTGTAGGAAAGCCAATGAGTCATGTCTCTTCATTAGGATCTGAAGTAGCTAAAAAG
15026 GCATGGCAATTTCGT
66 GCATGGC-ATTTCGT
* * *
15041 TTTTAACTCTTGTAGGAAAGCCAATGAGTCATGTTTCTTCATTAGGATCTGATGTAGCTGAAAAG
1 TTTTAACTCTTGTAGGAAAGCCAATGAGTCATGTCTCTTCATTAGGATCTGAAGTAGCTAAAAAG
15106 GCATGGCATTTC
66 GCATGGCATTTC
15118 TCCTTAATGA
Statistics
Matches: 71, Mismatches: 6, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
79 5 0.07
80 66 0.93
ACGTcount: A:0.28, C:0.15, G:0.22, T:0.35
Consensus pattern (79 bp):
TTTTAACTCTTGTAGGAAAGCCAATGAGTCATGTCTCTTCATTAGGATCTGAAGTAGCTAAAAAG
GCATGGCATTTCGT
Found at i:15591 original size:48 final size:48
Alignment explanation
Indices: 15554--15732 Score: 238
Period size: 48 Copynumber: 3.7 Consensus size: 48
15544 CAAGGCATTT
* *
15554 AACAAAGATGCATTTAACAAACAAAACAGTTAATAATGC-ATATTACTA
1 AACAAAGATGCATTTAACAAACAAAACACTTAATAATGCAAGATTA-TA
* *
15602 AACAAAGATGCATTTAACAAACAAAACAGTTAATAATG-TAGATTACTA
1 AACAAAGATGCATTTAACAAACAAAACACTTAATAATGCAAGATTA-TA
* *
15650 AACAAAGATGCATTTAACAAACAAGACACTTAATGATGC-AGATTACTA
1 AACAAAGATGCATTTAACAAACAAAACACTTAATAATGCAAGATTA-TA
*
15698 AACAAAGATGCATTTAACAAAAAAAAACACTTAAT
1 AACAAAGATGCATTTAAC-AAACAAAACACTTAAT
15733 GAAGCATAAA
Statistics
Matches: 122, Mismatches: 6, Indels: 5
0.92 0.05 0.04
Matches are distributed among these distances:
48 108 0.89
49 14 0.11
ACGTcount: A:0.53, C:0.15, G:0.09, T:0.23
Consensus pattern (48 bp):
AACAAAGATGCATTTAACAAACAAAACACTTAATAATGCAAGATTATA
Found at i:15703 original size:96 final size:97
Alignment explanation
Indices: 15554--15732 Score: 297
Period size: 96 Copynumber: 1.9 Consensus size: 97
15544 CAAGGCATTT
* *
15554 AACAAAGATGCATTTAACAAACAAAACAGTTAATAATGCATATTACTAAACAAAGATGCATTTAA
1 AACAAAGATGCATTTAACAAACAAAACACTTAATAATGCAGATTACTAAACAAAGATGCATTTAA
* *
15619 C-AAACAAAACAGTTAATAATGTAGATTACTA
66 CAAAAAAAAACACTTAATAATGTAGATTACTA
* *
15650 AACAAAGATGCATTTAACAAACAAGACACTTAATGATGCAGATTACTAAACAAAGATGCATTTAA
1 AACAAAGATGCATTTAACAAACAAAACACTTAATAATGCAGATTACTAAACAAAGATGCATTTAA
15715 CAAAAAAAAACACTTAAT
66 CAAAAAAAAACACTTAAT
15733 GAAGCATAAA
Statistics
Matches: 76, Mismatches: 6, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
96 62 0.82
97 14 0.18
ACGTcount: A:0.53, C:0.15, G:0.09, T:0.23
Consensus pattern (97 bp):
AACAAAGATGCATTTAACAAACAAAACACTTAATAATGCAGATTACTAAACAAAGATGCATTTAA
CAAAAAAAAACACTTAATAATGTAGATTACTA
Found at i:21775 original size:80 final size:79
Alignment explanation
Indices: 21678--21841 Score: 267
Period size: 80 Copynumber: 2.1 Consensus size: 79
21668 TGCAAACACT
* *
21678 AATTTCATTTTAACTCTTGTAAGAAAGCTAATGAGTCATGTCTCTTCATTAGGATCTGAAGTAGT
1 AATTTCATTTTAACTCTTGTAAGAAAGCCAATGAGTCATGTCTCTTCATTAGGATCTGAAGTAGC
21743 TAAAAAGGCATGGC
66 TAAAAAGGCATGGC
* *
21757 AATTTCATTTTTAACTCTTGTAGGAAAGCCAATGAGTCATGTCTCTTCATTAGGATCTGATGTAG
1 AATTTCA-TTTTAACTCTTGTAAGAAAGCCAATGAGTCATGTCTCTTCATTAGGATCTGAAGTAG
*
21822 CTGAAAAGGCATGGC
65 CTAAAAAGGCATGGC
21837 -ATTTC
1 AATTTC
21842 TCCTTAATGA
Statistics
Matches: 79, Mismatches: 5, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
79 12 0.15
80 67 0.85
ACGTcount: A:0.30, C:0.15, G:0.20, T:0.35
Consensus pattern (79 bp):
AATTTCATTTTAACTCTTGTAAGAAAGCCAATGAGTCATGTCTCTTCATTAGGATCTGAAGTAGC
TAAAAAGGCATGGC
Found at i:22344 original size:48 final size:48
Alignment explanation
Indices: 22272--22440 Score: 250
Period size: 48 Copynumber: 3.5 Consensus size: 48
22262 TTAATGCAAG
* *
22272 GCATTTAACAAACAAAACAGTTAATAATGCATATTACTAAACAAAGAT
1 GCATTTAACAAACAAAACAATTAATAATGCAGATTACTAAACAAAGAT
22320 GCATTTAACAAACAAAACAATTAATAATGCAGATTACTAAACAAAGAT
1 GCATTTAACAAACAAAACAATTAATAATGCAGATTACTAAACAAAGAT
* * * * *
22368 TCATTTAACAAACAAAACACTTAATGATGCAGATTATTAGACAAAGAT
1 GCATTTAACAAACAAAACAATTAATAATGCAGATTACTAAACAAAGAT
*
22416 GCATTTAACAAA-AAAAAAACTTAAT
1 GCATTTAACAAACAAAACAA-TTAAT
22441 GAAGCATAAA
Statistics
Matches: 110, Mismatches: 10, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
47 5 0.05
48 105 0.95
ACGTcount: A:0.53, C:0.14, G:0.08, T:0.25
Consensus pattern (48 bp):
GCATTTAACAAACAAAACAATTAATAATGCAGATTACTAAACAAAGAT
Found at i:28174 original size:80 final size:79
Alignment explanation
Indices: 28043--28206 Score: 206
Period size: 80 Copynumber: 2.1 Consensus size: 79
28033 TACAAACACT
* * * * * *
28043 AATTTCATTTTAACTCTTGTAGGGAAGCTAATAAGTCATGTGTCTTTATTAGGATTTGATGTAGT
1 AATTTCATTTTAACTCTTGTAGGGAAGCCAATAAGTCATGTCTCTTCATTAGGATCTGATATAGC
*
28108 TAAAAAGGAATGGC
66 AAAAAAGGAATGGC
* *
28122 AATTTCATTTTTAACTTTTGTA-GGATAGCCAATGAGTCATGTCTCTTCATTAGGATCTGATATA
1 AATTTCA-TTTTAACTCTTGTAGGGA-AGCCAATAAGTCATGTCTCTTCATTAGGATCTGATATA
*
28186 GCAAAAAAGGCATGGC
64 GCAAAAAAGGAATGGC
28202 -ATTTC
1 AATTTC
28207 TCCTTAATGA
Statistics
Matches: 73, Mismatches: 10, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
79 15 0.21
80 58 0.79
ACGTcount: A:0.31, C:0.12, G:0.20, T:0.37
Consensus pattern (79 bp):
AATTTCATTTTAACTCTTGTAGGGAAGCCAATAAGTCATGTCTCTTCATTAGGATCTGATATAGC
AAAAAAGGAATGGC
Found at i:28690 original size:48 final size:48
Alignment explanation
Indices: 28634--28761 Score: 202
Period size: 48 Copynumber: 2.6 Consensus size: 48
28624 GCATTAATGC
*
28634 AAGATGCATTTAACAAACAAAACAGTTAATAATGCAGATTACTAAACA
1 AAGATGCATTTAACAAACAAAACACTTAATAATGCAGATTACTAAACA
* *
28682 AAGATGCATTTAACAAACAAAACACTTAATGATGCAGATTATTAAACA
1 AAGATGCATTTAACAAACAAAACACTTAATAATGCAGATTACTAAACA
*
28730 AAGATGCATTTAACAAAAAAAAAACACTTAAT
1 AAGATGCATTTAAC--AAACAAAACACTTAAT
28762 GAAGCATAAA
Statistics
Matches: 74, Mismatches: 4, Indels: 2
0.93 0.05 0.03
Matches are distributed among these distances:
48 59 0.80
50 15 0.20
ACGTcount: A:0.53, C:0.14, G:0.09, T:0.23
Consensus pattern (48 bp):
AAGATGCATTTAACAAACAAAACACTTAATAATGCAGATTACTAAACA
Found at i:28776 original size:48 final size:47
Alignment explanation
Indices: 28634--28778 Score: 177
Period size: 48 Copynumber: 3.0 Consensus size: 47
28624 GCATTAATGC
* *
28634 AAGATGCATTTAACAAACAAAACAGTTAAT-AATGCAGATTACTAAACA
1 AAGATGCATTTAACAAACAAAACACTTAATGAA-GCA-ATTAATAAACA
* *
28682 AAGATGCATTTAACAAACAAAACACTTAATGATGCAGATTATTAAACA
1 AAGATGCATTTAACAAACAAAACACTTAATGAAGCA-ATTAATAAACA
* *
28730 AAGATGCATTTAACAAAAAAAAAACACTTAATGAAGC-ATAAATAAACA
1 AAGATGCATTTAAC--AAACAAAACACTTAATGAAGCAATTAATAAACA
28778 A
1 A
28779 CTTTATTTAT
Statistics
Matches: 87, Mismatches: 7, Indels: 6
0.87 0.07 0.06
Matches are distributed among these distances:
48 67 0.77
49 1 0.01
50 19 0.22
ACGTcount: A:0.54, C:0.14, G:0.10, T:0.22
Consensus pattern (47 bp):
AAGATGCATTTAACAAACAAAACACTTAATGAAGCAATTAATAAACA
Found at i:29528 original size:216 final size:216
Alignment explanation
Indices: 29066--33170 Score: 4425
Period size: 216 Copynumber: 19.0 Consensus size: 216
29056 CTCACATCAG
* *
29066 TTTTAGACGAAATGATGCGATTTCCCGAGCATGGAATGTTCAAAAAATTGGTCGAAGGAATGGAT
1 TTTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCGAAAAATTGGTCGAAGGAATGGAT
* * * * * * *
29131 CATCTTCAATACTCTTAGAAATCGAAGTTATAAAAAGAACTCGTAAATGTTTGACAAGTTTGGAA
66 CGTCTTGAATACTCTCAGGAACCGAAGTTAT-AAAAGAACTAGTAAATGTTTGACAAGTTTGAAA
* * * * *
29196 GTTTGTACAAGAACTAAGAGAGAAACAATTCTCACGT-AAAAAG-TTTTAAATCAAAGAGCAAAA
130 GTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAAAAAGTTTTTAATTCAAAGACCAAAA
29259 GTTGTTTACAAAATGACAAACT
195 GTTGTTTACAAAATGACAAACT
* * * * * * * * * ** *
29281 GTTTAGACCAATTGATGTGACTTCTCGAGCATGAAATTTTTGGAAAATAAGTCGAAGGAATGAAT
1 TTTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCGAAAAATTGGTCGAAGGAATGGAT
* * * * * *
29346 CGTCTTAAATACTCTTAGGAAACAAAGTAATAAAAAAACTAGTAAATGTTTGACAAGTTTGAAAG
66 CGTCTTGAATACTCTCAGGAACCGAAGTTATAAAAGAACTAGTAAATGTTTGACAAGTTTGAAAG
* * *
29411 TTCGTCCAAGAACCAAGAGA-AAGACAATTCTCATGTAAATAAGTTTTTAATTCAAAGACTAAAA
131 TTCGTCCAAGAACCAAGAGAGAA-ACAATTCTCACGTAAAAAAGTTTTTAATTCAAAGACCAAAA
* *
29475 GTTGTTTACAAATTGACAGACT
195 GTTGTTTACAAAATGACAAACT
* * * * *
29497 TTTTAGACCAAATTATTCGATTTCCCGAGCATAGAATGTTCGAAAAATTTGTCGAAAGAATGGAT
1 TTTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCGAAAAATTGGTCGAAGGAATGGAT
* * * * * * * * *
29562 CATCTTGACTACTATCAGGAACTGAAGTTATAAAAGAACTAGCAATTGTTTGAAAAGTTCGGAAG
66 CGTCTTGAATACTCTCAGGAACCGAAGTTATAAAAGAACTAGTAAATGTTTGACAAGTTTGAAAG
* * *
29627 TTCGTCCAAGAACCAAGAGAGAAAGAATTCTAACGTAAAAAATTTTTTAATTCAAAGACCAAAAG
131 TTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAAAAAGTTTTTAATTCAAAGACCAAAAG
* *
29692 TTATTCACAAAATGACAAACT
196 TTGTTTACAAAATGACAAACT
* * ** * *
29713 ATTTT-GACCAAATAATGCAATTTCCCGATAATGGAATCTTCGAAAAATTGGTCAAAGGAATGGA
1 -TTTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCGAAAAATTGGTCGAAGGAATGGA
* * * * * * * * *
29777 TTGTCTTGAATACTCTCAAGAACTGAAGTTGTGAAAGAACTCGTAAATGTTTAACCAA-TTCGGA
65 TCGTCTTGAATACTCTCAGGAACCGAAGTTATAAAAGAACTAGTAAATGTTTGA-CAAGTTTGAA
* * * ** *
29841 AGTTTGTCCAAGAGCCAAGAGAGAGACAATTCTTTCGTAAAAAAATTTTTAATTCAAAGACCAAA
129 AGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAAAAAGTTTTTAATTCAAAGACCAAA
29906 AGTTGTTTACAAAATGACAAACT
194 AGTTGTTTACAAAATGACAAACT
* * * * * *
29929 ATTTAGACCAAATGTTGTGATTTCCCGATCATGGAATGTTAGAAAAATTGGTCGAGGGAATGGAT
1 TTTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCGAAAAATTGGTCGAAGGAATGGAT
* * * * * * * * *
29994 CATCTTGACTACTATCAGGAACCGAAGTTATAAAAGAACTTGTAAAAGTTTGACTAGTTCGTATG
66 CGTCTTGAATACTCTCAGGAACCGAAGTTATAAAAGAACTAGTAAATGTTTGACAAGTTTGAAAG
* ** * * *
30059 TTTGTTTAAGAACCAAGAGGGAAACAATTCTCACGTAAATAAGTATTTAATTC-AAGAACCAAAA
131 TTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAAAAAGTTTTTAATTCAAAG-ACCAAAA
* * *
30123 GTTATTTGCAAAATGACAAGCT
195 GTTGTTTACAAAATGACAAACT
* ** * * * * * * *
30145 ATTTAGTTCAAATGATGCGATTTCTCGGGCATGAAAT-TTTGAAAAATTGGTCAAAGGAAAGGAC
1 TTTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCGAAAAATTGGTCGAAGGAATGGAT
* * * * * *
30209 CGTCTTTAATACTCTTAGGAACCAAAGTTACAAAAGAACTCA-TAAATGTTTGACGAGTTCGAAA
66 CGTCTTGAATACTCTCAGGAACCGAAGTTATAAAAGAACT-AGTAAATGTTTGACAAGTTTGAAA
* * * * *
30273 GTTTGTCCAATAACCAATAGAGAAACAATTCTCATGTAAAAAAGTTTTTAATTCAAAGACCAAAT
130 GTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAAAAAGTTTTTAATTCAAAGACCAAAA
30338 GTTGTTTACAAAATGACAAACT
195 GTTGTTTACAAAATGACAAACT
* * * * * * * *
30360 ATTTAGACCAAATGATGCAATTTCTC-AGCATTGAATGATCGGAAAATTGCTCAAAGGAATGGAT
1 TTTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCGAAAAATTGGTCGAAGGAATGGAT
* * * * * * * *
30424 CGTCTTGAATACTTTAACGAACCGAAGTTATAGAAGAACTTGTAAAAT-TTTGACTAGTTTGTAT
66 CGTCTTGAATACTCTCAGGAACCGAAGTTATAAAAGAACTAGT-AAATGTTTGACAAGTTTGAAA
* * * * *
30488 GTTAGTCCAAGAACCAAGAGGGAAACAATTTTCACGTAAAAAAGTGTTTAATTCAAAG-CAAAAA
130 GTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAAAAAGTTTTTAATTCAAAGAC-CAAA
*
30552 ACTTGTTTACAAAATGACAAACT
194 AGTTGTTTACAAAATGACAAACT
** * * * *
30575 ATTTT-GACCAAATGACACGATTTCTCGATCGTGGAATGTTCGACAAATTGGTCGAAGGAATGGA
1 -TTTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCGAAAAATTGGTCGAAGGAATGGA
* * * * * *
30639 TCGTCTTGACTACTATCAGTAATCGAAGTTATCAAAGAACTAGTAAATGTTTGACAAGTTCGAAA
65 TCGTCTTGAATACTCTCAGGAACCGAAGTTATAAAAGAACTAGTAAATGTTTGACAAGTTTGAAA
* * *
30704 CTTCGTCCAAAAACCGAA-AGAGAAACAATTCTCATGTAAAAAAGTTTTTAATTCAAAGACCAAA
130 GTTCGTCCAAGAACC-AAGAGAGAAACAATTCTCACGTAAAAAAGTTTTTAATTCAAAGACCAAA
* *
30768 AGTTTTTTACAAAATGACAAACG
194 AGTTGTTTACAAAATGACAAACT
* *
30791 TTTTAGACCAAATGATGCGATTTCCCGAGCATGGAATG-TCTAAAAAATTGGTCAAAGGAATGGA
1 TTTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTC-GAAAAATTGGTCGAAGGAATGGA
* * * * * * **
30855 TCATCTTGACTACTATCTGGAACTGAAGTTTTAAAAGAACTAGTAAATGTTTGACAAGTTTGGTA
65 TCGTCTTGAATACTCTCAGGAACCGAAGTTATAAAAGAACTAGTAAATGTTTGACAAGTTTGAAA
* * * * * *
30920 CTTCGTCCAAGATCCGAGAGAGAAACAATTCTCACATAAATAAGTTTTTAATTCAAAGACCAAAT
130 GTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAAAAAGTTTTTAATTCAAAGACCAAAA
*
30985 GTTGTTTACAAAATAACAAACT
195 GTTGTTTACAAAATGACAAACT
* * * * *
31007 TTCTAAACCAAATGATGCGATTTCCCGAGCATGGAATGTTCAAAAAATTGGTTGAAGGAATGGGT
1 TTTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCGAAAAATTGGTCGAAGGAATGGAT
* * * *
31072 CGTCTTGAATACTCTCAGAAACCGAAGTTATAAAAGAATTCA-TAAAGGTTTGACAAG-TTCAGA
66 CGTCTTGAATACTCTCAGGAACCGAAGTTATAAAAGAACT-AGTAAATGTTTGACAAGTTTGA-A
* * *
31135 AGTTCATCCAAGAACCAAGAGAGAAACAATTCTCACGTAAACAAGTTTTTAAATCAAAGACCAAA
129 AGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAAAAAGTTTTTAATTCAAAGACCAAA
* * *
31200 AGCTGTTTAC--GACGACAAACT
194 AGTTGTTTACAAAATGACAAACT
* * * *
31221 ATTTAGATCAAATGATGTGATTTCCC-AGGCATGGATTGTTCGAAAAATTGGTCGAAGGAATGGA
1 TTTTAGACCAAATGATGCGATTTCCCGA-GCATGGAATGTTCGAAAAATTGGTCGAAGGAATGGA
* * * * * *
31285 TCGTCTTAAATACTCTCATGG-ATCGAAGTTATAAAAGAACTCGTAAATGTTTAACAAGTTCGGA
65 TCGTCTTGAATACTCTCA-GGAACCGAAGTTATAAAAGAACTAGTAAATGTTTGACAAGTTTGAA
* * * *
31349 AGTTCGTCCAAGAACTAATAGAGAAACAATTCTCATGTAAAAAAGTTTTTAACTCAAAGACCAAA
129 AGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAAAAAGTTTTTAATTCAAAGACCAAA
*
31414 TGTTGTTTACAAAATGACAAACT
194 AGTTGTTTACAAAATGACAAACT
* * * * * * * * * * **
31437 ATCTAGACCAAATGATGCGATTTCTC-AACTTGGAATATTTGAAAATTTGCTCAAATCAATGGAT
1 TTTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCGAAAAATTGGTCGAAGGAATGGAT
* * * * * * *
31501 CGTCTTGAATACTTTAAGGAACTGAAGTTATAAAAGAACTTGTAAAAT-TTTGACCAGTTTGTAT
66 CGTCTTGAATACTCTCAGGAACCGAAGTTATAAAAGAACTAGT-AAATGTTTGACAAGTTTGAAA
* * * * *
31565 GTTCGTCCAAAAACCAAGAGGGAAACAATTCTCACGTAAAAAAGTATTTAGTTCAGAG-CACAAA
130 GTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAAAAAGTTTTTAATTCAAAGAC-CAAA
31629 AGTTGTTTACAAAATGACAAACT
194 AGTTGTTTACAAAATGACAAACT
* * * * *
31652 ATTTT-CACCAAATGATGCGATTTCCCGATCTTGGAATGTTCAAAAAATTGGTCGAACGAATGGA
1 -TTTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCGAAAAATTGGTCGAAGGAATGGA
* * * * * * * * *
31716 TCGTCATAAATACTCTTAGGAACCGAAGTTATAAAAGAACTTGTAAAAGTTTGACTAGTTCGTAT
65 TCGTCTTGAATACTCTCAGGAACCGAAGTTATAAAAGAACTAGTAAATGTTTGACAAGTTTGAAA
* * * * * * *
31781 GTTGGTCTAAGAACCAAGAGGGAAACAATTCTCACGTAAATAAGTATTTAATTCAAATACCAAAT
130 GTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAAAAAGTTTTTAATTCAAAGACCAAAA
31846 GTTGTTTACAAAATGACGAAA-T
195 GTTGTTTACAAAATGAC-AAACT
* * * * * *
31868 ATTTAGATCAATTGATGTGATTTCCCGGGCATGGAATGTTCGAAAAATTGGTCGAAAGAATGGAT
1 TTTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCGAAAAATTGGTCGAAGGAATGGAT
* * * * * * * *
31933 CGTCTTTAATACTCTCAGGAATCGAAGTTATAAAAGAACTCGTAAATGGTTGGCGAGCTCGAAAG
66 CGTCTTGAATACTCTCAGGAACCGAAGTTATAAAAGAACTAGTAAATGTTTGACAAGTTTGAAAG
* * * * *
31998 TTCATCCAAGAACTAATAGAGAAACAATTC-CTACGTAAAAAAGTATTTAGTTC--AGTA-CAAA
131 TTCGTCCAAGAACCAAGAGAGAAACAATTCTC-ACGTAAAAAAGTTTTTAATTCAAAG-ACCAAA
** *
32059 AGTTGTTTTGAAAATGACAAGCT
194 AGTTGTTTACAAAATGACAAACT
* * * * * * * *
32082 ATTTAGACCAAATGATACGATTTCTCAATCATGAAATGTTCGAAAAATTGGTCAAAGGAATAGAT
1 TTTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCGAAAAATTGGTCGAAGGAATGGAT
** ** * **
32147 ATTCTTGGCTACTATCAGGAACCGAAGTTATAAAAGAACTAGTAAATGTTTGACAAGTTCAAAAG
66 CGTCTTGAATACTCTCAGGAACCGAAGTTATAAAAGAACTAGTAAATGTTTGACAAGTTTGAAAG
* * * *
32212 TTCGTCCAAGAACCAAGAAAGAAAGAATTCT-ATCATAAAAAAGTTTTTAATTCAAAAACCAAAA
131 TTCGTCCAAGAACCAAGAGAGAAACAATTCTCA-CGTAAAAAAGTTTTTAATTCAAAGACCAAAA
*
32276 GTTATTTACAAAATGACAAACT
195 GTTGTTTACAAAATGACAAACT
* * * *
32298 ATTTTA-ACCAAATGATGTGATTTCCCGATCATGGAATCTTCGAAAAATTGGTCAAAGGAATGGA
1 -TTTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCGAAAAATTGGTCGAAGGAATGGA
* * *
32362 TCGTCTTGAATACTCTCAGGAACCGAAGTTATAAAAGAACTCGTAAATGTTTAACAAG-TTCAGA
65 TCGTCTTGAATACTCTCAGGAACCGAAGTTATAAAAGAACTAGTAAATGTTTGACAAGTTTGA-A
* * * **
32426 AGTACGTACAAGAACTAAGAGAGAAACAATTCTCTTGTAAAAAAGTTTTTAATTCAAAGACCAAA
129 AGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAAAAAGTTTTTAATTCAAAGACCAAA
32491 AGTTGTTTACAAAATGACAAACT
194 AGTTGTTTACAAAATGACAAACT
* * ** * * * * *
32514 ATTAAGACCAAATGATAAGATTTCCTGATCATGGAATGTTTGAAAAATTGGTTGAAGAAATGGAT
1 TTTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCGAAAAATTGGTCGAAGGAATGGAT
* * * * * * *
32579 CGTCTGGACTACTATCAAGAATCGAAGTTATAAAAGAACTAGTAAATGTTTGACAAGTTTGGAAC
66 CGTCTTGAATACTCTCAGGAACCGAAGTTATAAAAGAACTAGTAAATGTTTGACAAGTTTGAAAG
* *
32644 TTCGTCCAAGAACCAAGAGAGAAAGAATTCTCACGTAAAAATGTTTTTAATTCAAAGACCAAAAG
131 TTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAAAAAGTTTTTAATTCAAAGACCAAAAG
*
32709 TTATTTACAAAATGACAAACT
196 TTGTTTACAAAATGACAAACT
* * * * * * *
32730 ATTTT-GATCAAATGATGTGATTTCCCGATCATGGAATCTTC-AGAAGATTGATCAAAGGAATGG
1 -TTTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCGA-AAAATTGGTCGAAGGAATGG
* * ** * *
32793 ATCGTGTTGAATACTCTCAGGAACCGAAGTTATAAAAGAACTTGTAAAACTTTGACTAGTTTGTA
64 ATCGTCTTGAATACTCTCAGGAACCGAAGTTATAAAAGAACTAGTAAATGTTTGACAAGTTTGAA
* * * * * * *
32858 TGTTCATCCAATAACCAAGA-AGGAAACATTTCTCACATAAATAAGTATTTAATTCAAAGACCAA
129 AGTTCGTCCAAGAACCAAGAGA-GAAACAATTCTCACGTAAAAAAGTTTTTAATTCAAAGACCAA
*
32922 AAGTTATTTACAAAATGACAAACT
193 AAGTTGTTTACAAAATGACAAACT
* * * *
32946 ATTTT-GACCAAATGATGCGATTTCCCGATCATGAAATCTTCGAAAAATTGGTCAAAGGAATGGA
1 -TTTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCGAAAAATTGGTCGAAGGAATGGA
* * * * *
33010 TCGTCTTGAATGCTCTCAGTAACCGAAGTTATAAAAGAACTCGTAAATGTTTAACAAG-TTCAGA
65 TCGTCTTGAATACTCTCAGGAACCGAAGTTATAAAAGAACTAGTAAATGTTTGACAAGTTTGA-A
* * *
33074 AGTTCGTCCAAGAACTAATAGTGAAACAATTCTCACGTAAAAAAGTTTTTAATTC-AAGACCAAA
129 AGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAAAAAGTTTTTAATTCAAAGACCAAA
* *
33138 ATTTGTTTACAAAATGACCAACT
194 AGTTGTTTACAAAATGACAAACT
*
33161 ATTTAGACCA
1 TTTTAGACCA
33171 TGATACGTGT
Statistics
Matches: 3239, Mismatches: 590, Indels: 122
0.82 0.15 0.03
Matches are distributed among these distances:
213 6 0.00
214 419 0.13
215 649 0.20
216 2138 0.66
217 27 0.01
ACGTcount: A:0.40, C:0.15, G:0.17, T:0.29
Consensus pattern (216 bp):
TTTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCGAAAAATTGGTCGAAGGAATGGAT
CGTCTTGAATACTCTCAGGAACCGAAGTTATAAAAGAACTAGTAAATGTTTGACAAGTTTGAAAG
TTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAAAAAGTTTTTAATTCAAAGACCAAAAG
TTGTTTACAAAATGACAAACT
Found at i:30734 original size:862 final size:862
Alignment explanation
Indices: 29067--33170 Score: 4745
Period size: 862 Copynumber: 4.8 Consensus size: 862
29057 TCACATCAGT
* *
29067 TTTAGACGAAATGATGCGATTTCCCGAGCATGGAATGTTCAAAAAATTGGTCGAAGGAATGGATC
1 TTTAGACCAAATGATGCGATTTCCCGATCATGGAATGTT-AAAAAATTGGTCGAAGGAATGGATC
* * * * * * * * *
29132 ATCTTCAATACTCTTAGAAATCGAAGTTATAAAAAGAACTCGTAAATGTTTGACAAGTTTGGAAG
65 ATCTTGACTACTATCAGGAACCGAAGTTAT-AAAAGAACTAGTAAATGTTTGACAAGTTCGTAAG
* * * * *
29197 TTTGTACAAGAACTAAGAGAGAAACAATTCTCACGTAAA-AAGT-TTTAAATCAAAGAGCAAAAG
129 TTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTATTTAATTCAAAGACCAAAAG
* * * * * * *
29260 TTGTTTACAAAATGACAAACTGTTTAGACCAATTGATGTGACTTCTCGAGCATGAAATTTTTGGA
194 TTGTTTACAAAATGACAAACTATTTAGATCAAATGATGTGATTTCCCGAGCATGGAA-TTTTGAA
** * * * * * * * *
29325 AAATAAGTCGAAGGAATGAATCGTCTTAAATACTCTTAGGAAACAAAGTAATAAAAAAACT-AGT
258 AAATTGGTCAAAGGAATGGATCGTCTTGAATACTCTCAGGAACCGAAGTTATAAAAGAACTCA-T
* * * *
29389 AAATGTTTGACAAGTTTGAAAGTTCGTCCAAGAACCAAGAGA-AAGACAATTCTCATGTAAATAA
322 AAATGTTTGACAAGTTCGAAAGTTCATCCAAGAACCAAGAGAGAA-ACAATTCTCACGTAAAAAA
* * * * * *
29453 GTTTTTAATTCAAAGACTAAAAGTTGTTTACAAATTGACAGACTTTTTAGACCAAATTATTCGAT
386 GTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGAT
* * * *
29518 TTCCCGAGCATAGAATGTTCGAAAAATTTGTCGAAA-GAATGGATCATCTTGACTACTATCAGGA
451 TTCCCGAGCATTGAATGTTCGAAAAATTGGTC-AAAGGAATGGATCGTCTTGAATACTATCAGGA
* * * *
29582 ACTGAAGTTATAAAAGAACTAGCAATTGTTTGAAAAGTTCGGAAGTTCGTCCAAGAACCAAGAGA
515 ACCGAAGTTATAAAAGAACTAGTAAATGTTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGA
* * * * *
29647 GAAAGAATTCTAACGTAAAAAATTTTTTAATTCAAAGACCAAAAGTTATTCACAAAATGACAAAC
580 GAAACAATTCTCACGTAAAAAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAAC
* * *
29712 TATTTTGACCAAATAATGCAATTTCCCGATAATGGAATCTTCGAAAAATTGGTCAAAGGAATGGA
645 TATTTTGACCAAATGATGCGATTTCCCGATCATGGAATCTTCGAAAAATTGGTCAAAGGAATGGA
* * * * *
29777 TTGTCTTGAATACTCTCAAGAACTGAAGTTGTGAAAGAACTCGTAAATGTTTAACCAA-TTCGGA
710 TCGTCTTGAATACTCTCAGGAACTGAAGTTATAAAAGAACTCGTAAATGTTTAA-CAAGTTCGAA
* * * * *
29841 AGTTTGTCCAAGAGCCAAGAGAGAGACAATTCT-TTCGTAAAAAAATTTTTAATTCAAAGACCAA
774 AGTTCGTCCAAAAACCAAGAGAGAAACAATTCTCTT-GTAAAAAAGTTTTTAATTCAAAGACCAA
29905 AAGTTGTTTACAAAATGACAAACTA
838 AAGTTGTTTACAAAATGACAAACTA
* * *
29930 TTTAGACCAAATGTTGTGATTTCCCGATCATGGAATGTTAGAAAAATTGGTCGAGGGAATGGATC
1 TTTAGACCAAATGATGCGATTTCCCGATCATGGAATGTTA-AAAAATTGGTCGAAGGAATGGATC
* * * *
29995 ATCTTGACTACTATCAGGAACCGAAGTTATAAAAGAACTTGTAAAAGTTTGACTAGTTCGTATGT
65 ATCTTGACTACTATCAGGAACCGAAGTTATAAAAGAACTAGTAAATGTTTGACAAGTTCGTAAGT
* ** *
30060 TTGTTTAAGAACCAAGAGGGAAACAATTCTCACGTAAATAAGTATTTAATTC-AAGAACCAAAAG
130 TCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTATTTAATTCAAAG-ACCAAAAG
* * * * * * * *
30124 TTATTTGCAAAATGACAAGCTATTTAGTTCAAATGATGCGATTTCTCGGGCATGAAATTTTGAAA
194 TTGTTTACAAAATGACAAACTATTTAGATCAAATGATGTGATTTCCCGAGCATGGAATTTTGAAA
* * * * * *
30189 AATTGGTCAAAGGAAAGGACCGTCTTTAATACTCTTAGGAACCAAAGTTACAAAAGAACTCATAA
259 AATTGGTCAAAGGAATGGATCGTCTTGAATACTCTCAGGAACCGAAGTTATAAAAGAACTCATAA
* ** * * *
30254 ATGTTTGACGAGTTCGAAAGTTTGTCCAATAACCAATAGAGAAACAATTCTCATGTAAAAAAGTT
324 ATGTTTGACAAGTTCGAAAGTTCATCCAAGAACCAAGAGAGAAACAATTCTCACGTAAAAAAGTT
* *
30319 TTTAATTCAAAGACCAAATGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCAATTTC
389 TTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTC
* * * * * * *
30384 TC-AGCATTGAATGATCGGAAAATTGCTCAAAGGAATGGATCGTCTTGAATACTTTAACGAACCG
454 CCGAGCATTGAATGTTCGAAAAATTGGTCAAAGGAATGGATCGTCTTGAATACTATCAGGAACCG
* * * * * * * *
30448 AAGTTATAGAAGAACTTGTAAAAT-TTTGACTAGTTTGTATGTTAGTCCAAGAACCAAGAGGGAA
519 AAGTTATAAAAGAACTAGT-AAATGTTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAA
* * * *
30512 ACAATTTTCACGTAAAAAAGTGTTTAATTCAAAG-CAAAAAACTTGTTTACAAAATGACAAACTA
583 ACAATTCTCACGTAAAAAAGTTTTTAATTCAAAGAC-CAAAAGTTGTTTACAAAATGACAAACTA
** * * * * *
30576 TTTTGACCAAATGACACGATTTCTCGATCGTGGAATGTTCGACAAATTGGTCGAAGGAATGGATC
647 TTTTGACCAAATGATGCGATTTCCCGATCATGGAATCTTCGAAAAATTGGTCAAAGGAATGGATC
* * * * * * *
30641 GTCTTGACTACTATCAGTAA-TCGAAGTTATCAAAGAACTAGTAAATGTTTGACAAGTTCGAAAC
712 GTCTTGAATACTCTCAGGAACT-GAAGTTATAAAAGAACTCGTAAATGTTTAACAAGTTCGAAAG
*
30705 TTCGTCCAAAAACCGAA-AGAGAAACAATTCTCATGTAAAAAAGTTTTTAATTCAAAGACCAAAA
776 TTCGTCCAAAAACC-AAGAGAGAAACAATTCTCTTGTAAAAAAGTTTTTAATTCAAAGACCAAAA
*
30769 GTTTTTTACAAAATGACAAACGT-
840 GTTGTTTACAAAATGACAAAC-TA
* *
30792 TTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTCTAAAAAATTGGTCAAAGGAATGGATC
1 TTTAGACCAAATGATGCGATTTCCCGATCATGGAATGT-TAAAAAATTGGTCGAAGGAATGGATC
* * * * *
30857 ATCTTGACTACTATCTGGAACTGAAGTTTTAAAAGAACTAGTAAATGTTTGACAAGTTTGGT-AC
65 ATCTTGACTACTATCAGGAACCGAAGTTATAAAAGAACTAGTAAATGTTTGACAAG-TTCGTAAG
* * * * *
30921 TTCGTCCAAGATCCGAGAGAGAAACAATTCTCACATAAATAAGTTTTTAATTCAAAGACCAAATG
129 TTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTATTTAATTCAAAGACCAAAAG
* * * * **
30986 TTGTTTACAAAATAACAAACT-TTCTAAACCAAATGATGCGATTTCCCGAGCATGGAATGTTCAA
194 TTGTTTACAAAATGACAAACTATT-TAGATCAAATGATGTGATTTCCCGAGCATGGAAT-TTTGA
** * * *
31050 AAAATTGGTTGAAGGAATGGGTCGTCTTGAATACTCTCAGAAACCGAAGTTATAAAAGAATTCAT
257 AAAATTGGTCAAAGGAATGGATCGTCTTGAATACTCTCAGGAACCGAAGTTATAAAAGAACTCAT
* *
31115 AAAGGTTTGACAAGTTC-AGAAGTTCATCCAAGAACCAAGAGAGAAACAATTCTCACGTAAACAA
322 AAATGTTTGACAAGTTCGA-AAGTTCATCCAAGAACCAAGAGAGAAACAATTCTCACGTAAAAAA
* * * * * *
31179 GTTTTTAAATCAAAGACCAAAAGCTGTTTAC--GACGACAAACTATTTAGATCAAATGATGTGAT
386 GTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGAT
* * * * *
31242 TTCCC-AGGCATGGATTGTTCGAAAAATTGGTCGAAGGAATGGATCGTCTTAAATACTCTCATGG
451 TTCCCGA-GCATTGAATGTTCGAAAAATTGGTCAAAGGAATGGATCGTCTTGAATACTATCA-GG
* * * * *
31306 -ATCGAAGTTATAAAAGAACTCGTAAATGTTTAACAAGTTCGGAAGTTCGTCCAAGAACTAATAG
514 AACCGAAGTTATAAAAGAACTAGTAAATGTTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAG
* * *
31370 AGAAACAATTCTCATGTAAAAAAGTTTTTAACTCAAAGACCAAATGTTGTTTACAAAATGACAAA
579 AGAAACAATTCTCACGTAAAAAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAA
* * * * * * * * * **
31435 CTATCTAGACCAAATGATGCGATTTCTC-AACTTGGAATATTTGAAAATTTGCTCAAATCAATGG
644 CTATTTTGACCAAATGATGCGATTTCCCGATCATGGAATCTTCGAAAAATTGGTCAAAGGAATGG
* * * * * * *
31499 ATCGTCTTGAATACTTTAAGGAACTGAAGTTATAAAAGAACTTGTAAAAT-TTTGACCAGTTTGT
709 ATCGTCTTGAATACTCTCAGGAACTGAAGTTATAAAAGAACTCGT-AAATGTTTAACAAGTTCGA
* * ** * * *
31563 ATGTTCGTCCAAAAACCAAGAGGGAAACAATTCTCACGTAAAAAAGTATTTAGTTCAGAG-CACA
773 AAGTTCGTCCAAAAACCAAGAGAGAAACAATTCTCTTGTAAAAAAGTTTTTAATTCAAAGAC-CA
31627 AAAGTTGTTTACAAAATGACAAACTA
837 AAAGTTGTTTACAAAATGACAAACTA
** * *
31653 TTTTCACCAAATGATGCGATTTCCCGATCTTGGAATGTTCAAAAAATTGGTCGAACGAATGGATC
1 TTTAGACCAAATGATGCGATTTCCCGATCATGGAATGTT-AAAAAATTGGTCGAAGGAATGGATC
* * * * * * * * * *
31718 GTCATAAATACTCTTAGGAACCGAAGTTATAAAAGAACTTGTAAAAGTTTGACTAGTTCGTATGT
65 ATCTTGACTACTATCAGGAACCGAAGTTATAAAAGAACTAGTAAATGTTTGACAAGTTCGTAAGT
* * * * *
31783 TGGTCTAAGAACCAAGAGGGAAACAATTCTCACGTAAATAAGTATTTAATTCAAATACCAAATGT
130 TCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTATTTAATTCAAAGACCAAAAGT
* * *
31848 TGTTTACAAAATGACGAAA-TATTTAGATCAATTGATGTGATTTCCCGGGCATGGAATGTTCGAA
195 TGTTTACAAAATGAC-AAACTATTTAGATCAAATGATGTGATTTCCCGAGCATGGAAT-TTTGAA
* * *
31912 AAATTGGTCGAAA-GAATGGATCGTCTTTAATACTCTCAGGAATCGAAGTTATAAAAGAACTCGT
258 AAATTGGTC-AAAGGAATGGATCGTCTTGAATACTCTCAGGAACCGAAGTTATAAAAGAACTCAT
* * * * * *
31976 AAATGGTTGGCGAGCTCGAAAGTTCATCCAAGAACTAATAGAGAAACAATTC-CTACGTAAAAAA
322 AAATGTTTGACAAGTTCGAAAGTTCATCCAAGAACCAAGAGAGAAACAATTCTC-ACGTAAAAAA
* * ** * *
32040 GTATTTAGTTC--AGTA-CAAAAGTTGTTTTGAAAATGACAAGCTATTTAGACCAAATGATACGA
386 GTTTTTAATTCAAAG-ACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGA
* * * * ** **
32102 TTTCTCAATCA-TGAAATGTTCGAAAAATTGGTCAAAGGAATAGATATTCTTGGCTACTATCAGG
450 TTTCCCGAGCATTG-AATGTTCGAAAAATTGGTCAAAGGAATGGATCGTCTTGAATACTATCAGG
** *
32166 AACCGAAGTTATAAAAGAACTAGTAAATGTTTGACAAGTTCAAAAGTTCGTCCAAGAACCAAGAA
514 AACCGAAGTTATAAAAGAACTAGTAAATGTTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAG
* * * *
32231 AGAAAGAATTCT-ATCATAAAAAAGTTTTTAATTCAAAAACCAAAAGTTATTTACAAAATGACAA
579 AGAAACAATTCTCA-CGTAAAAAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAA
* *
32295 ACTATTTTAACCAAATGATGTGATTTCCCGATCATGGAATCTTCGAAAAATTGGTCAAAGGAATG
643 ACTATTTTGACCAAATGATGCGATTTCCCGATCATGGAATCTTCGAAAAATTGGTCAAAGGAATG
*
32360 GATCGTCTTGAATACTCTCAGGAACCGAAGTTATAAAAGAACTCGTAAATGTTTAACAAGTTC-A
708 GATCGTCTTGAATACTCTCAGGAACTGAAGTTATAAAAGAACTCGTAAATGTTTAACAAGTTCGA
* * * *
32424 GAAGTACGTACAAGAACTAAGAGAGAAACAATTCTCTTGTAAAAAAGTTTTTAATTCAAAGACCA
773 -AAGTTCGTCCAAAAACCAAGAGAGAAACAATTCTCTTGTAAAAAAGTTTTTAATTCAAAGACCA
32489 AAAGTTGTTTACAAAATGACAAACTA
837 AAAGTTGTTTACAAAATGACAAACTA
* ** * * * *
32515 TTAAGACCAAATGATAAGATTTCCTGATCATGGAATGTTTGAAAAATTGGTTGAAGAAATGGATC
1 TTTAGACCAAATGATGCGATTTCCCGATCATGGAATG-TTAAAAAATTGGTCGAAGGAATGGATC
* * * * * * *
32580 GTCTGGACTACTATCAAGAATCGAAGTTATAAAAGAACTAGTAAATGTTTGACAAGTTTGGAACT
65 ATCTTGACTACTATCAGGAACCGAAGTTATAAAAGAACTAGTAAATGTTTGACAAGTTCGTAAGT
* *
32645 TCGTCCAAGAACCAAGAGAGAAAGAATTCTCACGTAAA-AATGTTTTTAATTCAAAGACCAAAAG
130 TCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAA-GTATTTAATTCAAAGACCAAAAG
* * * * *
32709 TTATTTACAAAATGACAAACTATTTTGATCAAATGATGTGATTTCCCGATCATGGAATCTTCAGA
194 TTGTTTACAAAATGACAAACTATTTAGATCAAATGATGTGATTTCCCGAGCATGGAATTTTGA-A
* * * **
32774 AGATTGATCAAAGGAATGGATCGTGTTGAATACTCTCAGGAACCGAAGTTATAAAAGAACTTGTA
258 AAATTGGTCAAAGGAATGGATCGTCTTGAATACTCTCAGGAACCGAAGTTATAAAAGAACTCATA
** * * * * * * * *
32839 AAACTTTGACTAGTTTGTATGTTCATCCAATAACCAAGA-AGGAAACATTTCTCACATAAATAAG
323 AATGTTTGACAAGTTCGAAAGTTCATCCAAGAACCAAGAGA-GAAACAATTCTCACGTAAAAAAG
* * *
32903 TATTTAATTCAAAGACCAAAAGTTATTTACAAAATGACAAACTATTTTGACCAAATGATGCGATT
387 TTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATT
* * * * *
32968 TCCCGATCA-TGAAATCTTCGAAAAATTGGTCAAAGGAATGGATCGTCTTGAATGCTCTCAGTAA
452 TCCCGAGCATTG-AATGTTCGAAAAATTGGTCAAAGGAATGGATCGTCTTGAATACTATCAGGAA
* * * * * *
33032 CCGAAGTTATAAAAGAACTCGTAAATGTTTAACAAGTTCAGAAGTTCGTCCAAGAACTAATAGTG
516 CCGAAGTTATAAAAGAACTAGTAAATGTTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAG
* *
33097 AAACAATTCTCACGTAAAAAAGTTTTTAATTC-AAGACCAAAATTTGTTTACAAAATGACCAACT
581 AAACAATTCTCACGTAAAAAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACT
*
33161 ATTTAGACCA
646 ATTTTGACCA
33171 TGATACGTGT
Statistics
Matches: 2723, Mismatches: 460, Indels: 116
0.83 0.14 0.04
Matches are distributed among these distances:
859 13 0.00
860 15 0.01
861 738 0.27
862 1248 0.46
863 460 0.17
864 248 0.09
865 1 0.00
ACGTcount: A:0.40, C:0.15, G:0.17, T:0.29
Consensus pattern (862 bp):
TTTAGACCAAATGATGCGATTTCCCGATCATGGAATGTTAAAAAATTGGTCGAAGGAATGGATCA
TCTTGACTACTATCAGGAACCGAAGTTATAAAAGAACTAGTAAATGTTTGACAAGTTCGTAAGTT
CGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTATTTAATTCAAAGACCAAAAGTT
GTTTACAAAATGACAAACTATTTAGATCAAATGATGTGATTTCCCGAGCATGGAATTTTGAAAAA
TTGGTCAAAGGAATGGATCGTCTTGAATACTCTCAGGAACCGAAGTTATAAAAGAACTCATAAAT
GTTTGACAAGTTCGAAAGTTCATCCAAGAACCAAGAGAGAAACAATTCTCACGTAAAAAAGTTTT
TAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCC
GAGCATTGAATGTTCGAAAAATTGGTCAAAGGAATGGATCGTCTTGAATACTATCAGGAACCGAA
GTTATAAAAGAACTAGTAAATGTTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACA
ATTCTCACGTAAAAAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTT
GACCAAATGATGCGATTTCCCGATCATGGAATCTTCGAAAAATTGGTCAAAGGAATGGATCGTCT
TGAATACTCTCAGGAACTGAAGTTATAAAAGAACTCGTAAATGTTTAACAAGTTCGAAAGTTCGT
CCAAAAACCAAGAGAGAAACAATTCTCTTGTAAAAAAGTTTTTAATTCAAAGACCAAAAGTTGTT
TACAAAATGACAAACTA
Found at i:38175 original size:50 final size:50
Alignment explanation
Indices: 38098--38253 Score: 163
Period size: 50 Copynumber: 3.1 Consensus size: 50
38088 TGACATCGAT
* *
38098 TAACTCTCATGATTAGTTAAGTTTGCATCATAAATAATGACATGCATTAAG
1 TAACTCACATG-TTAGTTAAATTTGCATCATAAATAATGACATGCATTAAG
* * ** *
38149 TAACTTACATGTTAGTTAAATATGCATCATAAATCCT-ATCATGCATTATG
1 TAACTCACATGTTAGTTAAATTTGCATCATAAATAATGA-CATGCATTAAG
* * *
38199 TAACTCCCATGTTAGTTAAAGTTTGCATCATTAAATCAA-GTCATGCATTTAG
1 TAACTCACATGTTAGTTAAA-TTTGCATCA-TAAAT-AATGACATGCATTAAG
38251 TAA
1 TAA
38254 TCCATTAGTT
Statistics
Matches: 85, Mismatches: 15, Indels: 9
0.78 0.14 0.08
Matches are distributed among these distances:
49 1 0.01
50 50 0.59
51 17 0.20
52 17 0.20
ACGTcount: A:0.36, C:0.15, G:0.12, T:0.37
Consensus pattern (50 bp):
TAACTCACATGTTAGTTAAATTTGCATCATAAATAATGACATGCATTAAG
Found at i:39473 original size:17 final size:16
Alignment explanation
Indices: 39443--39494 Score: 50
Period size: 17 Copynumber: 3.1 Consensus size: 16
39433 TTTCGTGTTT
* *
39443 AGAAAAAGTGAAAAAA
1 AGAAAAAATCAAAAAA
39459 AGAAAAAAATCAAAATAA
1 AG-AAAAAATCAAAA-AA
*
39477 TGAAAAAATCAAAGAAA
1 AGAAAAAATCAAA-AAA
39494 A
1 A
39495 TTCGAAGTTT
Statistics
Matches: 29, Mismatches: 4, Indels: 5
0.76 0.11 0.13
Matches are distributed among these distances:
16 2 0.07
17 23 0.79
18 4 0.14
ACGTcount: A:0.75, C:0.04, G:0.12, T:0.10
Consensus pattern (16 bp):
AGAAAAAATCAAAAAA
Found at i:40513 original size:9 final size:9
Alignment explanation
Indices: 40499--40550 Score: 52
Period size: 9 Copynumber: 5.8 Consensus size: 9
40489 TCGTGTTTAG
40499 AAAAAATGA
1 AAAAAATGA
*
40508 AAAAAAAGA
1 AAAAAATGA
40517 AAAAAATG-
1 AAAAAATGA
* *
40525 AAATATTGA
1 AAAAAATGA
*
40534 AAAAAATCA
1 AAAAAATGA
40543 AAGAAAAT
1 AA-AAAAT
40551 TCGAAGTTTG
Statistics
Matches: 34, Mismatches: 7, Indels: 3
0.77 0.16 0.07
Matches are distributed among these distances:
8 6 0.18
9 23 0.68
10 5 0.15
ACGTcount: A:0.75, C:0.02, G:0.10, T:0.13
Consensus pattern (9 bp):
AAAAAATGA
Found at i:40549 original size:27 final size:27
Alignment explanation
Indices: 40505--40568 Score: 69
Period size: 26 Copynumber: 2.4 Consensus size: 27
40495 TTAGAAAAAA
*
40505 TGAAAAAAAAGAAAAAAA-T-GAAATAT
1 TGAAAAAAAACAAAAAAATTCGAAAT-T
* *
40531 TGAAAAAAATCAAAGAAAATTCGAAGTT
1 TGAAAAAAAACAAA-AAAATTCGAAATT
40559 TGAAAAAAAA
1 TGAAAAAAAA
40569 GAAGAAAAGA
Statistics
Matches: 31, Mismatches: 4, Indels: 4
0.79 0.10 0.10
Matches are distributed among these distances:
26 12 0.39
27 4 0.13
28 11 0.35
29 4 0.13
ACGTcount: A:0.67, C:0.03, G:0.12, T:0.17
Consensus pattern (27 bp):
TGAAAAAAAACAAAAAAATTCGAAATT
Found at i:40573 original size:27 final size:27
Alignment explanation
Indices: 40505--40576 Score: 78
Period size: 28 Copynumber: 2.7 Consensus size: 27
40495 TTAGAAAAAA
40505 TGAAAAAAAAGAA-AAAAATGAAATAT
1 TGAAAAAAAAGAAGAAAAATGAAATAT
* *
40531 TGAAAAAAATCA-AAGAAAATTCGAAGT-T
1 TGAAAAAAA--AGAAGAAAAAT-GAAATAT
40559 TGAAAAAAAAGAAGAAAA
1 TGAAAAAAAAGAAGAAAA
40577 GAATTCAAAT
Statistics
Matches: 39, Mismatches: 2, Indels: 9
0.78 0.04 0.18
Matches are distributed among these distances:
26 10 0.26
27 9 0.23
28 16 0.41
29 4 0.10
ACGTcount: A:0.68, C:0.03, G:0.14, T:0.15
Consensus pattern (27 bp):
TGAAAAAAAAGAAGAAAAATGAAATAT
Found at i:40625 original size:29 final size:30
Alignment explanation
Indices: 40560--40625 Score: 73
Period size: 29 Copynumber: 2.3 Consensus size: 30
40550 TTCGAAGTTT
* * **
40560 GAAAAAAAAGAAGAAAAGAATTCAAATTAA
1 GAAAAAAAAGAAAAAAAGAATACAAAAGAA
*
40590 -AAGAAAAAGAAAAAAAG-ATACAAAAGAA
1 GAAAAAAAAGAAAAAAAGAATACAAAAGAA
40618 GAAAAAAA
1 GAAAAAAA
40626 TTCAAGTATT
Statistics
Matches: 29, Mismatches: 6, Indels: 3
0.76 0.16 0.08
Matches are distributed among these distances:
28 8 0.28
29 21 0.72
ACGTcount: A:0.76, C:0.03, G:0.14, T:0.08
Consensus pattern (30 bp):
GAAAAAAAAGAAAAAAAGAATACAAAAGAA
Found at i:41801 original size:39 final size:39
Alignment explanation
Indices: 41755--41853 Score: 171
Period size: 39 Copynumber: 2.5 Consensus size: 39
41745 TTAAATAGGG
41755 TTTTAATGTGTCTTAGTTTGATACATATTTAATAGTTGT
1 TTTTAATGTGTCTTAGTTTGATACATATTTAATAGTTGT
*
41794 TTTTAATGTGTCTTATTTTGATACATATTTAATAGTTGT
1 TTTTAATGTGTCTTAGTTTGATACATATTTAATAGTTGT
* *
41833 TTTTAAGGTGTCTAAGTTTGA
1 TTTTAATGTGTCTTAGTTTGA
41854 GACAAATTAA
Statistics
Matches: 56, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
39 56 1.00
ACGTcount: A:0.25, C:0.05, G:0.16, T:0.54
Consensus pattern (39 bp):
TTTTAATGTGTCTTAGTTTGATACATATTTAATAGTTGT
Found at i:41935 original size:32 final size:32
Alignment explanation
Indices: 41899--41960 Score: 97
Period size: 32 Copynumber: 1.9 Consensus size: 32
41889 AGCCGAAATT
* * *
41899 AATTAGCTGATTAATGTGTTTCAGGTACATGC
1 AATTAGCTAATTAATATATTTCAGGTACATGC
41931 AATTAGCTAATTAATATATTTCAGGTACAT
1 AATTAGCTAATTAATATATTTCAGGTACAT
41961 TTATGGATGG
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
32 27 1.00
ACGTcount: A:0.34, C:0.11, G:0.16, T:0.39
Consensus pattern (32 bp):
AATTAGCTAATTAATATATTTCAGGTACATGC
Found at i:45257 original size:13 final size:14
Alignment explanation
Indices: 45238--45276 Score: 53
Period size: 13 Copynumber: 2.9 Consensus size: 14
45228 GTCAAGAAAG
45238 TGAAAAGAAAGAGA
1 TGAAAAGAAAGAGA
*
45252 -GAAAAGAAAAAGA
1 TGAAAAGAAAGAGA
*
45265 TGAAAAGGAAGA
1 TGAAAAGAAAGA
45277 AAAAGAGATA
Statistics
Matches: 21, Mismatches: 3, Indels: 2
0.81 0.12 0.08
Matches are distributed among these distances:
13 12 0.57
14 9 0.43
ACGTcount: A:0.67, C:0.00, G:0.28, T:0.05
Consensus pattern (14 bp):
TGAAAAGAAAGAGA
Found at i:48463 original size:39 final size:39
Alignment explanation
Indices: 48373--48463 Score: 146
Period size: 39 Copynumber: 2.3 Consensus size: 39
48363 GGTTTTAATT
* *
48373 TGTCTTAGTCTGATACATATTTAATAGTTGTTTTTAATG
1 TGTCTTAGTTTGATACATATTTAATAGTTGTTTTTAAGG
*
48412 TGTCTTATTTTGATACATATTTAATAGTTGTTTTTAAGG
1 TGTCTTAGTTTGATACATATTTAATAGTTGTTTTTAAGG
*
48451 TGTCTAAGTTTGA
1 TGTCTTAGTTTGA
48464 GACAAATTAA
Statistics
Matches: 47, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
39 47 1.00
ACGTcount: A:0.25, C:0.07, G:0.16, T:0.52
Consensus pattern (39 bp):
TGTCTTAGTTTGATACATATTTAATAGTTGTTTTTAAGG
Found at i:48545 original size:32 final size:32
Alignment explanation
Indices: 48509--48570 Score: 106
Period size: 32 Copynumber: 1.9 Consensus size: 32
48499 AGCCGAAATT
* *
48509 AATTAGCTGATTAATGTGTTTCAGGTACATAC
1 AATTAGCTGATTAATATATTTCAGGTACATAC
48541 AATTAGCTGATTAATATATTTCAGGTACAT
1 AATTAGCTGATTAATATATTTCAGGTACAT
48571 GTATGGATGG
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
32 28 1.00
ACGTcount: A:0.34, C:0.11, G:0.16, T:0.39
Consensus pattern (32 bp):
AATTAGCTGATTAATATATTTCAGGTACATAC
Found at i:50610 original size:216 final size:216
Alignment explanation
Indices: 50217--53000 Score: 3022
Period size: 216 Copynumber: 13.0 Consensus size: 216
50207 CAAAACTTTG
* * * * * * *
50217 TCCAACAATCAAGAGAGAAAGAATTCTAAAGTAAAAAAGTTTTTAACTT-AAAGACAAAAAGTTG
1 TCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAA-TTCAAAGACCAAAAGTTG
* * * *
50281 TTTACAAAATGAAAAACTTTTTAGACCAAGTGATGCGATTT-CTCGAGCATGAAATGCTCGAAAA
65 TTTACAAAATGACAAACTTTTTAGACCAAATGATGCGATTTCCT-GAGCATGGAATGTTCGAAAA
** * * * * *
50345 ATAAGTCGAAGGAATGGATCGCCTT-AAGTACTCTCAGAAACTGAAGTTATAAAAGAACTCATAA
129 ATTGGTCAAAGGAATGGATCGTCTTGAA-TACTCTCAGGAACCGAAGTTATAAAAGAACTCGTAA
* * *
50409 ATGTTTGACCATTTCAGAAGTTCG
193 ATGTTTGACAAGTTCAGAAGTTCA
** *
50433 TCCAAGAACCAAGAGAGCGACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACAAAAAGTTGT
1 TCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGT
* * * *
50498 TTACAAAATGACAAACTTTTTAGACCAAATGATACGATTTCCTGAGGATGGAATATTCAAAAAAT
66 TTACAAAATGACAAACTTTTTAGACCAAATGATGCGATTTCCTGAGCATGGAATGTTCGAAAAAT
* * * * * * * *
50563 TGGTCAAAGGAATTGATCATCTTGAATATTCTCAGGACCCAAAGTTATAAAACAACTTGTAAAAG
131 TGGTCAAAGGAATGGATCGTCTTGAATACTCTCAGGAACCGAAGTTATAAAAGAACTCGTAAATG
* * *
50628 TTTAACTAGTTC-GTATGTTCA
196 TTTGACAAGTTCAG-AAGTTCA
* * *
50649 TCCAAGAACCAAGAGGGAAACAATTCTCACGTAAATAAGTATTTTAATTTAATGACCAAAAGTTG
1 TCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGT-TTTTAATTCAAAGACCAAAAGTTG
* * * * *
50714 TTTACAAAGTGAAAAACGTTTTAGACCAAATGATGCGATTTCCCGATCATGGAATGTTCG-AAAA
65 TTTACAAAATGACAAACTTTTTAGACCAAATGATGCGATTTCCTGAGCATGGAATGTTCGAAAAA
* * ** *
50778 TTGGTCAAAGGAATGGATCGTCTT-AACTACTATTAGGAATTGAAGTTATAAAAGAACTAGT-AA
130 TTGGTCAAAGGAATGGATCGTCTTGAA-TACTCTCAGGAACCGAAGTTATAAAAGAACTCGTAAA
**
50841 TG-TTGACAAGTTTGGAAGTTCA
194 TGTTTGACAAGTTCAGAAGTTCA
* * * *
50863 TCCAAGAACCAAGAGAGAAAGAATTCTCACGTAAAAAAGTTTTTCATTCAAAGACCAAAAGTTAT
1 TCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGT
* * * * *
50928 TTACAAAATGATAAACTATTTT-GACCAAATGATGTGATTTCCCGATCATGGAATCTTC-AGAAA
66 TTACAAAATGACAAACT-TTTTAGACCAAATGATGCGATTTCCTGAGCATGGAATGTTCGA-AAA
* *
50991 ATTGGTCAAAGGAATGGATCATCTTGAATACTCTCAGGAACAGAAGTTATAAAAGAACTCGTAAA
129 ATTGGTCAAAGGAATGGATCGTCTTGAATACTCTCAGGAACCGAAGTTATAAAAGAACTCGTAAA
*
51056 ---TTAACAAGTTCAGAAGTTCA
194 TGTTTGACAAGTTCAGAAGTTCA
* * *
51076 TCCAAGAACCAAGAGAGAAACAATTCTCTCGTAAAAAAGTTTTTAAATT-AAAGTCCAAAAGTTG
1 TCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTT-AATTCAAAGACCAAAAGTTG
* * * *
51140 TTTACAAAATGACTAACTTTTTATACCAAGTGATGCGATTTCCCT-AGCATGAAATGTTCTG-AA
65 TTTACAAAATGACAAACTTTTTAGACCAAATGATGCGATTT-CCTGAGCATGGAATGTTC-GAAA
** * * *
51203 AATAAGTCGAAGGAATGGATCGTCTT-AAGTACTCTCAGAAACCAAAGTTATAAAAGAACTCGTA
128 AATTGGTCAAAGGAATGGATCGTCTTGAA-TACTCTCAGGAACCGAAGTTATAAAAGAACTCGTA
*
51267 AATGTTTGACAAGTTCGGAAGTTCA
192 AATGTTTGACAAGTTCAGAAGTTCA
* ** * * *
51292 TCCAAGAACTAAGAGAGCGACAATTCTTACGTAACTAAGTTTTTAATTCAAAGACAAAAAGTTGT
1 TCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGT
* * * * *
51357 TTACAAAATGACAAACTTTTTAGATCAAATGATACGATTT-CTCAAGGACGGAATGCTT-GAAAA
66 TTACAAAATGACAAACTTTTTAGACCAAATGATGCGATTTCCT-GAGCATGGAATG-TTCGAAAA
* * *
51420 ATTGGTCGAATGAATGGATCGTCTTGAATACTCTCAGGAACCGAAGTTACAAAAGAACTCGTAAA
129 ATTGGTCAAAGGAATGGATCGTCTTGAATACTCTCAGGAACCGAAGTTATAAAAGAACTCGTAAA
* * * *
51485 TGTTTGAAAAGTCCGGAAGTTCG
194 TGTTTGACAAGTTCAGAAGTTCA
* * * * *
51508 TCAAAGTACCAAGAGAGAAACAATTGTCACGTAAATTAGTTTTTAATTTTAAA-ACCAAAAGTTG
1 TCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAA-TTCAAAGACCAAAAGTTG
* ** * *
51572 TTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCAATCATGGAATGTTCAAAAAA
65 TTTACAAAATGACAAACTTTTTAGACCAAATGATGCGATTTCCTGAGCATGGAATGTTCGAAAAA
* * * * * * * *
51637 TAT-GTCGAACGAATAGATCGTCTTGAATACTATTAGGAATCGAAGTTATAACAGAACTCATAAA
130 T-TGGTCAAAGGAATGGATCGTCTTGAATACTCTCAGGAACCGAAGTTATAAAAGAACTCGTAAA
* * *
51701 GGCTTGACAAGTT-AGAAAGTTCG
194 TGTTTGACAAGTTCAG-AAGTTCA
* * * * * *
51724 TCCTAGAACCAAGAGAGAAACAATTCTCACGTAAAAAAAGTTTATAAATCAAAGACCAAAAGCTA
1 TCCAAGAACCAAGAGAGAAACAATTCTCACGT-AAATAAGTTTTTAATTCAAAGACCAAAAGTTG
* * *
51789 TTTACAAAATGACAAACTTTTTAGACCAAGTGATGCGATTTCCTGAGCATGAAATTTTCGAAAAA
65 TTTACAAAATGACAAACTTTTTAGACCAAATGATGCGATTTCCTGAGCATGGAATGTTCGAAAAA
* * * * ** *
51854 TTAGTCGAAGGAATGGATCGTCTTAAATACTCTTAGGAATTGAAGTTATAAAAGAATTCGTAAAT
130 TTGGTCAAAGGAATGGATCGTCTTGAATACTCTCAGGAACCGAAGTTATAAAAGAACTCGTAAAT
**
51919 GTTTGACAAGTT-AGGAAGTTTG
195 GTTTGACAAGTTCA-GAAGTTCA
* * * *
51941 TCCAAGAACCAAGAGAGCAAA-AATTC-CACGTAAATATGTTTTAAATTTAAAGACAAAAAGTTG
1 TCCAAGAACCAAGAGAG-AAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTG
* * * * * *
52004 TTTACAAAATGACAAACTATTTAGACCAATTGATGTGATTTCC-CAACATGGAATGTTCTAAAAA
65 TTTACAAAATGACAAACTTTTTAGACCAAATGATGCGATTTCCTGAGCATGGAATGTTCGAAAAA
* * ** * * *
52068 TTGCTCAAAGGAATGGATCGTCTTGAATACTGT-AAAAATCGGAGTTATAAAAGAACTTGTAGAA
130 TTGGTCAAAGGAATGGATCGTCTTGAATACTCTCAGGAACCGAAGTTATAAAAGAACTCGTA-AA
* * * * *
52132 -ATTTAACTAGGTC-GTATGTTCA
194 TGTTTGACAAGTTCAG-AAGTTCA
* * * *
52154 TCCAAGAACCAAGAGGGAAACAATTCTTACGTAAATAAGTATTTAATTCAAAGACCAAAAGTTAT
1 TCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGT
* * **
52219 TTACAAAATTACAAACTTTTTAAACCAAATGATGCGATTTCCCAAGCATGGAATGTTCGAAAAAT
66 TTACAAAATGACAAACTTTTTAGACCAAATGATGCGATTTCCTGAGCATGGAATGTTCGAAAAAT
* * * * * *
52284 TGGTCGAAGGAATGGATCATCTTCAATACTCTCAGGAACCAAAGTTACAAAAGAACTGGTAAATG
131 TGGTCAAAGGAATGGATCGTCTTGAATACTCTCAGGAACCGAAGTTATAAAAGAACTCGTAAATG
* *
52349 TTTGACGAGTTC-GAAAGTTCG
196 TTTGACAAGTTCAG-AAGTTCA
* * * *
52370 TCCAAGAACCAATATAGAAACAATTCTCACGTAAAAAAGTTTTTAATTTAAAGACCAAAAGTTGT
1 TCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGT
* * * *
52435 TTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCT-AGCATAGAATGTTTGGAAAAT
66 TTACAAAATGACAAACTTTTTAGACCAAATGATGCGATTTCCTGAGCATGGAATGTTCGAAAAAT
** * ** * * * *
52499 TCCTCAAATGAATACATCGTCTTGAATAATCTCAGGAATCGAAGTTATAAAAGAATTCGCAAAT-
131 TGGTCAAAGGAATGGATCGTCTTGAATACTCTCAGGAACCGAAGTTATAAAAGAACTCGTAAATG
* *
52563 TTTAACAAGTT-TGAAAGTTCA
196 TTTGACAAGTTCAG-AAGTTCA
* * *
52584 TCCAAGAATCAAGAGAGAAACAATTCTCTCGTAAAAAAGTTTTTAATTCAAAGACCAAAAGTTGT
1 TCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGT
* * * * *
52649 TTACAAAATGACAAAC-TATTATACCAAATGATGCGATTT--T--CCATGGAATCTTCGAAAATT
66 TTACAAAATGACAAACTTTTTAGACCAAATGATGCGATTTCCTGAGCATGGAATGTTCGAAAAAT
* * * * * * *
52709 TCGTCAAAGAAATGGATCGTCTTGAATACTCTCAAGAACCAAAGTTATAAAAGAATTTGTAAAAG
131 TGGTCAAAGGAATGGATCGTCTTGAATACTCTCAGGAACCGAAGTTATAAAAGAACTCGTAAATG
** *
52774 TTTGACTGGTTC-GTATGTTCA
196 TTTGACAAGTTCAG-AAGTTCA
* * * *
52795 TCTAAGAACCAAGGGAGAAACAATTCTCACGTAAATAAGTATTTAATTCAATGACCAAAAGTTGT
1 TCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGT
* * * * *
52860 TTAAAAAATGA-AAAATGTTTTAGACCAAATGATGTGATTTCCCGAGCATGGAATATTCG-AAAA
66 TTACAAAATGACAAACT-TTTTAGACCAAATGATGCGATTTCCTGAGCATGGAATGTTCGAAAAA
* * * * *
52923 TTGGTCAAAGGAATGGATCGTCTTGATTACTATCAAGAATCGAAGTTATAAAAGAACTAGTAAAT
130 TTGGTCAAAGGAATGGATCGTCTTGAATACTCTCAGGAACCGAAGTTATAAAAGAACTCGTAAAT
52988 GTTTGACAAGTTC
195 GTTTGACAAGTTC
53001 TGATACAAAA
Statistics
Matches: 2153, Mismatches: 361, Indels: 109
0.82 0.14 0.04
Matches are distributed among these distances:
210 69 0.03
211 84 0.04
212 30 0.01
213 316 0.15
214 325 0.15
215 269 0.12
216 799 0.37
217 257 0.12
218 4 0.00
ACGTcount: A:0.41, C:0.15, G:0.17, T:0.28
Consensus pattern (216 bp):
TCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGT
TTACAAAATGACAAACTTTTTAGACCAAATGATGCGATTTCCTGAGCATGGAATGTTCGAAAAAT
TGGTCAAAGGAATGGATCGTCTTGAATACTCTCAGGAACCGAAGTTATAAAAGAACTCGTAAATG
TTTGACAAGTTCAGAAGTTCA
Found at i:52224 original size:862 final size:857
Alignment explanation
Indices: 50217--53000 Score: 3396
Period size: 859 Copynumber: 3.2 Consensus size: 857
50207 CAAAACTTTG
* * * * * * *
50217 TCCAACAATCAAGAGAGAAAGAATTCTAAAGTAAAAAAGTTTTTAACTTAAAGACAAAAAGTTGT
1 TCCAAGAACCAAGAGAGAAACAATTCTCACGTAAAAAAGTTTTAAATTTAAAGACAAAAAGTTGT
* * * *
50282 TTACAAAATGAAAAACTTTTTAGACCAAGTGATGCGATTTCTCGAGCATGAAATGCTCGAAAAAT
66 TTACAAAATGACAAACTTTTTAGACCAAGTGATGCGATTTCCCGAGCATGAAATGTTCTAAAAAT
* * * *
50347 AAGTCGAAGGAATGGATCGCCTTAAGTACTCTCAGAAA-CTGAAGTTATAAAAGAACTCATAAAT
131 AAGTCAAAGGAATGGATCGTCTTAAGTACTCTCAAAAATC-GAAGTTATAAAAGAACTCGTAAAT
* * * *
50411 GTTTGACCATTTCAGAAGTTCGTCCAAGAACCAAGAGAGCGACAATTCTCACGTAAATAAGTTTT
195 GTTTGACAAGTTC-GAAGTTCATCCAAGAACCAAGAGAGCGACAATTCTTACGTAAATAAGTTTT
50476 TAATTCAAAGACAAAAAGTTGTTTACAAAATGACAAACTTTTTAGACCAAATGATACGATTTCCT
259 TAATTCAAAGACAAAAAGTTGTTTACAAAATGACAAACTTTTTAGACCAAATGATACGATTTCC-
* * * * * * *
50541 GAGGATGGAATATTCAAAAAATTGGTCAAAGGAATTGATCATCTTGAATATTCTCAGGACCCAAA
323 AAGGATGGAATGTTCGAAAAATTGGTCGAAGGAATGGATCATCTTGAATACTCTCAGGAACCAAA
* * * * * * * * *
50606 GTTATAAAACAACTTGTAAAAGTTT-AACTAGTTCGTATGTTCATCCAAGAACCAAGAGGGAAAC
388 GTTACAAAAGAACTCGTAAATGTTTGAA-AAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAAAC
* * *
50670 AATTCTCACGTAAATAAGTATTTTAATTTAATGACCAAAAGTTGTTTACAAAGTGAAAAACGT-T
452 AATTCTCACGTAAATAAGT-TTTTAATTTAA-AACCAAAAGTTGTTTACAAAATGACAAAC-TAT
* * * *
50734 TTAGACCAAATGATGCGATTTCCCGATCATGGAATGTTCGAAAATTGGTCAAAGGAATGGATCGT
514 TTAGACCAAATGATGCGATTTCCCAATCATGGAATGTTCGAAAATTCGTCAAACGAATAGATCGT
* * *
50799 CTT-AACTACTATTAGGAATTGAAGTTATAAAAGAACT-AGTAATGTTGACAAGTTTGGAAGTTC
579 CTTGAA-TACTATTAGGAATCGAAGTTATAAAAGAACTCA-TAAAGTTGACAAGTTTGAAAGTTC
* *
50862 ATCCAAGAACCAAGAGAGAAAGAATTCTCACGTAAAAAAGTTTTTCATTCAAAGACCAAAAGTTA
642 ATCCAAGAACCAAGAGAGAAACAATTCTCACGTAAAAAAGTTTTTAATTCAAAGACCAAAAGTTA
* * * *
50927 TTTACAAAATGATAAACTATTTT-GACCAAATGATGTGATTTCCCGATCATGGAATCTTC-AGAA
707 TTTACAAAATGACAAACT-TTTTAGACCAAATGATGCGATTTCCTGACCATGGAATCTTCGA-AA
* * *
50990 AATTGGTCAAAGGAATGGATCATCTTGAATACTCTCAGGAACAGAAGTTATAAAAGAACTCGTAA
770 AATTAGTCAAAGGAATGGATCGTCTTGAATACTCTCAGGAACAGAAGTTATAAAAGAATTCGTAA
*
51055 A--TTAACAAGTTCA-GAAGTTCA
835 AGTTTGACAAGTT-AGGAAGTTCA
* * *
51076 TCCAAGAACCAAGAGAGAAACAATTCTCTCGTAAAAAAGTTTTTAAA-TTAAAGTCCAAAAGTTG
1 TCCAAGAACCAAGAGAGAAACAATTCTCACGTAAAAAAG-TTTTAAATTTAAAGACAAAAAGTTG
* * * *
51140 TTTACAAAATGACTAACTTTTTATACCAAGTGATGCGATTTCCCTAGCATGAAATGTTCTGAAAA
65 TTTACAAAATGACAAACTTTTTAGACCAAGTGATGCGATTTCCCGAGCATGAAATGTTCTAAAAA
* * * *
51205 TAAGTCGAAGGAATGGATCGTCTTAAGTACTCTCAGAAACCAAAGTTATAAAAGAACTCGTAAAT
130 TAAGTCAAAGGAATGGATCGTCTTAAGTACTCTCAAAAATCGAAGTTATAAAAGAACTCGTAAAT
* *
51270 GTTTGACAAGTTCGGAAGTTCATCCAAGAACTAAGAGAGCGACAATTCTTACGTAACTAAGTTTT
195 GTTTGACAAGTTC-GAAGTTCATCCAAGAACCAAGAGAGCGACAATTCTTACGTAAATAAGTTTT
*
51335 TAATTCAAAGACAAAAAGTTGTTTACAAAATGACAAACTTTTTAGATCAAATGATACGATTTCTC
259 TAATTCAAAGACAAAAAGTTGTTTACAAAATGACAAACTTTTTAGACCAAATGATACGATTTC-C
* * * *
51400 AAGGACGGAATGCTT-GAAAAATTGGTCGAATGAATGGATCGTCTTGAATACTCTCAGGAACCGA
323 AAGGATGGAATG-TTCGAAAAATTGGTCGAAGGAATGGATCATCTTGAATACTCTCAGGAACCAA
* * * *
51464 AGTTACAAAAGAACTCGTAAATGTTTGAAAAGTCCGGAAGTTCGTCAAAGTACCAAGAGAGAAAC
387 AGTTACAAAAGAACTCGTAAATGTTTGAAAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAAAC
* *
51529 AATTGTCACGTAAATTAGTTTTTAATTTTAAAACCAAAAGTTGTTTACAAAATGACAAACTATTT
452 AATTCTCACGTAAATAAGTTTTTAA-TTTAAAACCAAAAGTTGTTTACAAAATGACAAACTATTT
* *
51594 AGACCAAATGATGCGATTTCCCAATCATGGAATGTTCAAAAAATAT-GTCGAACGAATAGATCGT
516 AGACCAAATGATGCGATTTCCCAATCATGGAATGTTC-GAAAAT-TCGTCAAACGAATAGATCGT
* *
51658 CTTGAATACTATTAGGAATCGAAGTTATAACAGAACTCATAAAGGCTTGACAAGTTAGAAAGTTC
579 CTTGAATACTATTAGGAATCGAAGTTATAAAAGAACTCATAAA-G-TTGACAAGTTTGAAAGTTC
* * * * *
51723 GTCCTAGAACCAAGAGAGAAACAATTCTCACGTAAAAAAAGTTTATAAATCAAAGACCAAAAGCT
642 ATCCAAGAACCAAGAGAGAAACAATTCTCACGT-AAAAAAGTTTTTAATTCAAAGACCAAAAGTT
* * * *
51788 ATTTACAAAATGACAAACTTTTTAGACCAAGTGATGCGATTTCCTGAGCATGAAATTTTCGAAAA
706 ATTTACAAAATGACAAACTTTTTAGACCAAATGATGCGATTTCCTGACCATGGAATCTTCGAAAA
* * * **
51853 ATTAGTCGAAGGAATGGATCGTCTTAAATACTCTTAGGAATTGAAGTTATAAAAGAATTCGTAAA
771 ATTAGTCAAAGGAATGGATCGTCTTGAATACTCTCAGGAACAGAAGTTATAAAAGAATTCGTAAA
**
51918 TGTTTGACAAGTTAGGAAGTTTG
836 -GTTTGACAAGTTAGGAAGTTCA
* *
51941 TCCAAGAACCAAGAGAGCAAA-AATTC-CACGTAAATATGTTTTAAATTTAAAGACAAAAAGTTG
1 TCCAAGAACCAAGAGAG-AAACAATTCTCACGTAAAAAAGTTTTAAATTTAAAGACAAAAAGTTG
* * * * *
52004 TTTACAAAATGACAAACTATTTAGACCAATTGATGTGATTTCCC-AACATGGAATGTTCTAAAAA
65 TTTACAAAATGACAAACTTTTTAGACCAAGTGATGCGATTTCCCGAGCATGAAATGTTCTAAAAA
* * * *
52068 T-TGCTCAAAGGAATGGATCGTCTTGAA-TACTGT-AAAAATCGGAGTTATAAAAGAACTTGTAG
130 TAAG-TCAAAGGAATGGATCGTCTT-AAGTACTCTCAAAAATCGAAGTTATAAAAGAACTCGTA-
* * * * * * **
52130 AA-ATTTAACTAGGTCGTATGTTCATCCAAGAACCAAGAGGGAAACAATTCTTACGTAAATAAGT
192 AATGTTTGACAAGTTCG-AAGTTCATCCAAGAACCAAGAGAGCGACAATTCTTACGTAAATAAGT
* * * * * *
52194 ATTTAATTCAAAGACCAAAAGTTATTTACAAAATTACAAACTTTTTAAACCAAATGATGCGATTT
256 TTTTAATTCAAAGACAAAAAGTTGTTTACAAAATGACAAACTTTTTAGACCAAATGATACGATTT
* *
52259 CCCAAGCATGGAATGTTCGAAAAATTGGTCGAAGGAATGGATCATCTTCAATACTCTCAGGAACC
321 -CCAAGGATGGAATGTTCGAAAAATTGGTCGAAGGAATGGATCATCTTGAATACTCTCAGGAACC
* ** * *
52324 AAAGTTACAAAAGAACTGGTAAATGTTTGACGAGTTCGAAAGTTCGTCCAAGAACCAATATAGAA
385 AAAGTTACAAAAGAACTCGTAAATGTTTGAAAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAA
*
52389 ACAATTCTCACGTAAAAAAGTTTTTAATTTAAAGACCAAAAGTTGTTTACAAAATGACAAACTAT
450 ACAATTCTCACGTAAATAAGTTTTTAATTTAAA-ACCAAAAGTTGTTTACAAAATGACAAACTAT
* * * * * * *
52454 TTAGACCAAATGATGCGATTT-CCTAGCATAGAATGTTTGGAAAATTCCTCAAATGAATACATCG
514 TTAGACCAAATGATGCGATTTCCCAATCATGGAATG-TTCGAAAATTCGTCAAACGAATAGATCG
* * * * ** * *
52518 TCTTGAATAATCTCAGGAATCGAAGTTATAAAAGAATTCGCAAATTTTAACAAGTTTGAAAGTTC
578 TCTTGAATACTATTAGGAATCGAAGTTATAAAAGAACTCATAAA-GTTGACAAGTTTGAAAGTTC
* * *
52583 ATCCAAGAATCAAGAGAGAAACAATTCTCTCGTAAAAAAGTTTTTAATTCAAAGACCAAAAGTTG
642 ATCCAAGAACCAAGAGAGAAACAATTCTCACGTAAAAAAGTTTTTAATTCAAAGACCAAAAGTTA
* * *
52648 TTTACAAAATGACAAAC-TATTATACCAAATGATGCGATTT--T--CCATGGAATCTTCGAAAAT
707 TTTACAAAATGACAAACTTTTTAGACCAAATGATGCGATTTCCTGACCATGGAATCTTCGAAAAA
* * * *
52708 TTCGTCAAAGAAATGGATCGTCTTGAATACTCTCAAGAACCA-AAGTTATAAAAGAATTTGTAAA
772 TTAGTCAAAGGAATGGATCGTCTTGAATACTCTCAGGAA-CAGAAGTTATAAAAGAATTCGT-AA
** * * *
52772 AGTTTGACTGGTTCGTATGTTCA
835 AGTTTGACAAGTTAGGAAGTTCA
* * * * * *
52795 TCTAAGAACCAAGGGAGAAACAATTCTCACGTAAATAAGTATTT-AATTCAATGACCAAAAGTTG
1 TCCAAGAACCAAGAGAGAAACAATTCTCACGTAAAAAAGT-TTTAAATTTAAAGACAAAAAGTTG
* * * * * * *
52859 TTTAAAAAATGA-AAAATGTTTTAGACCAAATGATGTGATTTCCCGAGCATGGAATATTC-GAAA
65 TTTACAAAATGACAAACT-TTTTAGACCAAGTGATGCGATTTCCCGAGCATGAAATGTTCTAAAA
** * * * * *
52922 ATTGGTCAAAGGAATGGATCGTCTTGATTACTATCAAGAATCGAAGTTATAAAAGAACTAGTAAA
129 ATAAGTCAAAGGAATGGATCGTCTTAAGTACTCTCAAAAATCGAAGTTATAAAAGAACTCGTAAA
52987 TGTTTGACAAGTTC
194 TGTTTGACAAGTTC
53001 TGATACAAAA
Statistics
Matches: 1662, Mismatches: 221, Indels: 87
0.84 0.11 0.04
Matches are distributed among these distances:
853 3 0.00
854 106 0.06
855 99 0.06
856 51 0.03
857 1 0.00
858 91 0.05
859 507 0.31
860 64 0.04
861 126 0.08
862 455 0.27
863 53 0.03
864 66 0.04
865 37 0.02
866 3 0.00
ACGTcount: A:0.41, C:0.15, G:0.17, T:0.28
Consensus pattern (857 bp):
TCCAAGAACCAAGAGAGAAACAATTCTCACGTAAAAAAGTTTTAAATTTAAAGACAAAAAGTTGT
TTACAAAATGACAAACTTTTTAGACCAAGTGATGCGATTTCCCGAGCATGAAATGTTCTAAAAAT
AAGTCAAAGGAATGGATCGTCTTAAGTACTCTCAAAAATCGAAGTTATAAAAGAACTCGTAAATG
TTTGACAAGTTCGAAGTTCATCCAAGAACCAAGAGAGCGACAATTCTTACGTAAATAAGTTTTTA
ATTCAAAGACAAAAAGTTGTTTACAAAATGACAAACTTTTTAGACCAAATGATACGATTTCCAAG
GATGGAATGTTCGAAAAATTGGTCGAAGGAATGGATCATCTTGAATACTCTCAGGAACCAAAGTT
ACAAAAGAACTCGTAAATGTTTGAAAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAAACAATT
CTCACGTAAATAAGTTTTTAATTTAAAACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACC
AAATGATGCGATTTCCCAATCATGGAATGTTCGAAAATTCGTCAAACGAATAGATCGTCTTGAAT
ACTATTAGGAATCGAAGTTATAAAAGAACTCATAAAGTTGACAAGTTTGAAAGTTCATCCAAGAA
CCAAGAGAGAAACAATTCTCACGTAAAAAAGTTTTTAATTCAAAGACCAAAAGTTATTTACAAAA
TGACAAACTTTTTAGACCAAATGATGCGATTTCCTGACCATGGAATCTTCGAAAAATTAGTCAAA
GGAATGGATCGTCTTGAATACTCTCAGGAACAGAAGTTATAAAAGAATTCGTAAAGTTTGACAAG
TTAGGAAGTTCA
Found at i:54853 original size:216 final size:215
Alignment explanation
Indices: 54381--55786 Score: 1507
Period size: 215 Copynumber: 6.5 Consensus size: 215
54371 CGACTCGTAT
* * *
54381 CAAGTTCGGAACTTCGTCCAAGAACCGAGAGAGAAACAATTCTCACGTAAAATAGTTTTTAATTC
1 CAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAAAAAGTTTTTAATTC
* * *
54446 AAAGACCAAAAGTTGTTTACACAGTGACAAACTTTTTAGACCAAATGATGCGATTTCTCGAGCAT
66 AAAGACCAAAAGTTGTTTACAAAATGACAAACTTTTTAGACCAAATGATGCGATTTCCCGAGCAT
* * * * * * *
54511 GGAATGTTCAAAAAATTGGTCGAAGGAATGGATCGTCTTGAATGCTCTC-AGAAATGAAAGTTAT
131 GGAAT-TTTAGAAAATTTGTCAAAGGAATGGATCATCTTGAATACTCTCAAGAAACG-AAGTTAT
* *
54575 AAAAGAATTTGTAAATGTTTGA
194 AAAAGAACTCGTAAATGTTTGA
** * *
54597 CAAGTTCAAAAGTT-TTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAAAAAGTTTTTAAATC
1 CAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAAAAAGTTTTTAATTC
* * *
54661 AAAGACCAAAAAGTTGTTTACAAAATGACAAACTTTTTAGACCAAGTGATGTGACTTCCCGAGCA
66 AAAGACC-AAAAGTTGTTTACAAAATGACAAACTTTTTAGACCAAATGATGCGATTTCCCGAGCA
* * ** *
54726 TGAAATTTTGGAAAATAAGTCAAAGGAATGGATCATCTTAAATACTCTCAAGAAACGAAGTTATA
130 TGGAATTTTAGAAAATTTGTCAAAGGAATGGATCATCTTGAATACTCTCAAGAAACGAAGTTATA
54791 AAAGAACTCGTAAATGTTTGA
195 AAAGAACTCGTAAATGTTTGA
* ** * *
54812 CAAGTTCGGAAGTTCGTTCAAGAACCAAGAGAGCGACAATTCTCATGTAAATAAGTTTTTAATTC
1 CAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAAAAAGTTTTTAATTC
** * * ** * *
54877 AAAGGTCAAAAGTTGTTTACAAATTGACAAACTTTTTAGACAAAATTTTGTGATTTCCTGAGCAT
66 AAAGACCAAAAGTTGTTTACAAAATGACAAACTTTTTAGACCAAATGATGCGATTTCCCGAGCAT
* * * * * * * *
54942 AGAATGTTGGAAAAATTTGTTAAAGGAATAGATCACCTTGAATACTCT-TAGGAACAGAAGTTAT
131 GGAATTTTAG-AAAATTTGTCAAAGGAATGGATCATCTTGAATACTCTCAAGAAAC-GAAGTTAT
* *
55006 AAAAGAACTCGTAACTGTTAGA
194 AAAAGAACTCGTAAATGTTTGA
* * * * *
55028 CAAGTTAGAAAGTTCGTCCACA-AACCAAAAGAGAAACAATTCTCATGTAAATAAGTTTTTAATT
1 CAAGTTCGGAAGTTCGTCCA-AGAACCAAGAGAGAAACAATTCTCACGTAAAAAAGTTTTTAATT
* * * * * *
55092 TAAAGACAAAAAGTTGTTCATAAAATGACAAACTCTTTAGACCAAATGATGCAATTTCCC-AGCA
65 CAAAGACCAAAAGTTGTTTACAAAATGACAAACTTTTTAGACCAAATGATGCGATTTCCCGAGCA
* * * * * * *
55156 TGGAATGTTCGAAAAATTGCTCAAAGGAATGGATCGTCTTGAATAAT-TTAAGGAACCGAAGTTA
130 TGGAATTTTAGAAAATTTG-TCAAAGGAATGGATCATCTTGAATACTCTCAA-GAAACGAAGTTA
* * *
55220 TAGAAGAACTTGTAAAACG-TTGA
193 TAAAAGAACTCGT-AAATGTTTGA
* ** * * * * * ** * *
55243 CTAGTTCATATGTTCATCCAAGAACAAAGAGGGAAACAATTCTAATATAAATAAGTATTTAATTC
1 CAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAAAAAGTTTTTAATTC
* * * *
55308 AATGACCAAAAGTTATTTACAAAATTACAAACTTTTTAGACCAAATGATGCGATTTCCCAAGCAT
66 AAAGACCAAAAGTTGTTTACAAAATGACAAACTTTTTAGACCAAATGATGCGATTTCCCGAGCAT
* * * * ** * * * *
55373 GGAATTTTCAAAAAATTAGTCGAGGGAATGGATTGTCTTGAATACTCTTAGGAACCAAAGTTATA
131 GGAATTTT-AGAAAATTTGTCAAAGGAATGGATCATCTTGAATACTCTCAAGAAACGAAGTTATA
* * *
55438 AACGAATTTGTAAATGTTTGA
195 AAAGAACTCGTAAATGTTTGA
* * * * * *
55459 CGAGTTCAGAAGCTAGTCCAAGAACCAATAGAGAAACAATTCTCACTTAAAAAAGTTTTTAATTC
1 CAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAAAAAGTTTTTAATTC
* * ** * *
55524 AAAGACCAAAAGTTGTTTTCAAAATGACAAACTATTTAGATAAAACGATACGATTTCCC-AGCAT
66 AAAGACCAAAAGTTGTTTACAAAATGACAAACTTTTTAGACCAAATGATGCGATTTCCCGAGCAT
* * * * *
55588 GGAATGTTTAGAAAA-TTGCTCAAATGAATGCATCATTTTGAATACTCTCAGGAATCGAAGTTAT
131 GGAAT-TTTAGAAAATTTG-TCAAAGGAATGGATCATCTTGAATACTCTCAAGAAACGAAGTTAT
*
55652 AAAAGAACTCGTAAAAGTTTGA
194 AAAAGAACTCGTAAATGTTTGA
** * * * *
55674 TGAGTTCGGACGTTCATCCAAGAACCAATAGAGAAACAATTCTCACGTAAAAAAGTTTTCAATTC
1 CAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAAAAAGTTTTTAATTC
* *
55739 AAAGACCAAAAGTTGTTTAGAAAATGACAAACTATTTAGACCAAATGA
66 AAAGACCAAAAGTTGTTTACAAAATGACAAACTTTTTAGACCAAATGA
55787 AAATTCTCAC
Statistics
Matches: 992, Mismatches: 181, Indels: 35
0.82 0.15 0.03
Matches are distributed among these distances:
214 11 0.01
215 519 0.52
216 452 0.46
217 10 0.01
ACGTcount: A:0.41, C:0.15, G:0.17, T:0.28
Consensus pattern (215 bp):
CAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAAAAAGTTTTTAATTC
AAAGACCAAAAGTTGTTTACAAAATGACAAACTTTTTAGACCAAATGATGCGATTTCCCGAGCAT
GGAATTTTAGAAAATTTGTCAAAGGAATGGATCATCTTGAATACTCTCAAGAAACGAAGTTATAA
AAGAACTCGTAAATGTTTGA
Found at i:55184 original size:431 final size:429
Alignment explanation
Indices: 54381--55786 Score: 1643
Period size: 431 Copynumber: 3.3 Consensus size: 429
54371 CGACTCGTAT
* * *
54381 CAAGTTCGGAACTTCGTCCAAGAACCGAGAGAGAAACAATTCTCACGTAAA-ATAGTTTTTAATT
1 CAAGTTCGGAAGTTCATCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATA-AGTTTTTAATT
* *
54445 CAAAGACCAAAAGTTGTTTACACAGTGACAAACTTTTTAGACCAAATGATGCGATTT-CTCGAGC
65 CAAAGACCAAAAGTTGTTTACAAATTGACAAACTTTTTAGACCAAATGATGCGATTTCCT-GAGC
* * *
54509 ATGGAATGTTCAAAAAATTGGTCGAAGGAATGGATCGTCTTGAATGCTCTCA-GAA-ATGAAAGT
129 ATGGAATGTTCAAAAAATTAGTCGAAGGAATGGATCGTCTTGAATACTCTTAGGAACA-G-AAGT
* *
54572 TATAAAAGAATTTGTAAATGTTTGACAAGTTCA-AAAGTTTTCCAAGAACCAAGAGAGAAACAAT
192 TATAAAAGAATTTGTAAATGTTTGACAAGTTCAGAAAGTTGTCCAAGAACCAAAAGAGAAACAAT
* * * *
54636 TCTCACGTAAAAAAGTTTTTAAATCAAAGACCAAAAAGTTGTTTACAAAATGACAAACTTTTTAG
257 TCTCATGTAAAAAAGTTTTTAATTCAAAGA-CAAAAAGTTG-TTATAAAATGACAAACTATTTAG
* * * * * * *
54701 ACCAAGTGATGTGACTTCCCGAGCATGAAATTTTGGAAAATAAG-TCAAAGGAATGGATCATCTT
320 ACCAAATGATGCGATTTCCC-AGCATGGAATGTTGAAAAAT-TGCTCAAAGGAATGGATCATCTT
* *
54765 AAATACTCTCAAGAAACGAAGTTATAAAAGAACTCGTAAATGTTTGA
383 GAATACTCTCAAGAAACGAAGTTATAAAAGAACTCGTAAAAGTTTGA
* * ** *
54812 CAAGTTCGGAAGTTCGTTCAAGAACCAAGAGAGCGACAATTCTCATGTAAATAAGTTTTTAATTC
1 CAAGTTCGGAAGTTCATCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTC
** * ** *
54877 AAAGGTCAAAAGTTGTTTACAAATTGACAAACTTTTTAGACAAAATTTTGTGATTTCCTGAGCAT
66 AAAGACCAAAAGTTGTTTACAAATTGACAAACTTTTTAGACCAAATGATGCGATTTCCTGAGCAT
* ** * ** * **
54942 AGAATGTTGGAAAAATTTGTTAAAGGAATAGATCACCTTGAATACTCTTAGGAACAGAAGTTATA
131 GGAATGTTCAAAAAATTAGTCGAAGGAATGGATCGTCTTGAATACTCTTAGGAACAGAAGTTATA
* * * *
55007 AAAGAACTCGTAACTGTTAGACAAGTT-AGAAAGTTCGTCCACA-AACCAAAAGAGAAACAATTC
196 AAAGAATTTGTAAATGTTTGACAAGTTCAGAAAGTT-GTCCA-AGAACCAAAAGAGAAACAATTC
* * *
55070 TCATGTAAATAAGTTTTTAATTTAAAGACAAAAAGTTGTTCATAAAATGACAAACTCTTTAGACC
259 TCATGTAAAAAAGTTTTTAATTCAAAGACAAAAAGTTGTT-ATAAAATGACAAACTATTTAGACC
* *
55135 AAATGATGCAATTTCCCAGCATGGAATGTTCGAAAAATTGCTCAAAGGAATGGATCGTCTTGAAT
323 AAATGATGCGATTTCCCAGCATGGAATGTT-GAAAAATTGCTCAAAGGAATGGATCATCTTGAAT
* * * * *
55200 AAT-TTAAGGAACCGAAGTTATAGAAGAACTTGTAAAACG-TTGA
387 ACTCTCAA-GAAACGAAGTTATAAAAGAACTCGTAAAA-GTTTGA
* ** * * * * ** *
55243 CTAGTTCATATGTTCATCCAAGAACAAAGAGGGAAACAATTCTAATATAAATAAGTATTTAATTC
1 CAAGTTCGGAAGTTCATCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTC
* * **
55308 AATGACCAAAAGTTATTTACAAAATT-ACAAACTTTTTAGACCAAATGATGCGATTTCCCAAGCA
66 AAAGACCAAAAGTTGTTTAC-AAATTGACAAACTTTTTAGACCAAATGATGCGATTTCCTGAGCA
* * *
55372 TGGAATTTTCAAAAAATTAGTCGAGGGAATGGATTGTCTTGAATACTCTTAGGAACCA-AAGTTA
130 TGGAATGTTCAAAAAATTAGTCGAAGGAATGGATCGTCTTGAATACTCTTAGGAA-CAGAAGTTA
* * * *
55436 TAAACGAATTTGTAAATGTTTGACGAGTTCAG-AAGCTAGTCCAAGAACCAATAGAGAAACAATT
194 TAAAAGAATTTGTAAATGTTTGACAAGTTCAGAAAG-TTGTCCAAGAACCAAAAGAGAAACAATT
* *
55500 CTCACT-TAAAAAAGTTTTTAATTCAAAGACCAAAAGTTGTTTTCAAAATGACAAACTATTTAGA
258 CTCA-TGTAAAAAAGTTTTTAATTCAAAGACAAAAAGTTGTTAT-AAAATGACAAACTATTTAGA
** * * * * * *
55564 TAAAACGATACGATTTCCCAGCATGGAATGTTTAGAAAATTGCTCAAATGAATGCATCATTTTGA
321 CCAAATGATGCGATTTCCCAGCATGGAATGTTGA-AAAATTGCTCAAAGGAATGGATCATCTTGA
* *
55629 ATACTCTCAGGAATCGAAGTTATAAAAGAACTCGTAAAAGTTTGA
385 ATACTCTCAAGAAACGAAGTTATAAAAGAACTCGTAAAAGTTTGA
** * * * *
55674 TGAGTTCGGACGTTCATCCAAGAACCAATAGAGAAACAATTCTCACGTAAAAAAGTTTTCAATTC
1 CAAGTTCGGAAGTTCATCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTC
* * *
55739 AAAGACCAAAAGTTGTTTAGAAAATGACAAACTATTTAGACCAAATGA
66 AAAGACCAAAAGTTGTTTACAAATTGACAAACTTTTTAGACCAAATGA
55787 AAATTCTCAC
Statistics
Matches: 816, Mismatches: 136, Indels: 46
0.82 0.14 0.05
Matches are distributed among these distances:
430 26 0.03
431 720 0.88
432 68 0.08
433 2 0.00
ACGTcount: A:0.41, C:0.15, G:0.17, T:0.28
Consensus pattern (429 bp):
CAAGTTCGGAAGTTCATCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTC
AAAGACCAAAAGTTGTTTACAAATTGACAAACTTTTTAGACCAAATGATGCGATTTCCTGAGCAT
GGAATGTTCAAAAAATTAGTCGAAGGAATGGATCGTCTTGAATACTCTTAGGAACAGAAGTTATA
AAAGAATTTGTAAATGTTTGACAAGTTCAGAAAGTTGTCCAAGAACCAAAAGAGAAACAATTCTC
ATGTAAAAAAGTTTTTAATTCAAAGACAAAAAGTTGTTATAAAATGACAAACTATTTAGACCAAA
TGATGCGATTTCCCAGCATGGAATGTTGAAAAATTGCTCAAAGGAATGGATCATCTTGAATACTC
TCAAGAAACGAAGTTATAAAAGAACTCGTAAAAGTTTGA
Found at i:56031 original size:291 final size:291
Alignment explanation
Indices: 55496--56075 Score: 765
Period size: 291 Copynumber: 2.0 Consensus size: 291
55486 ATAGAGAAAC
* * * **
55496 AATTCTCACTTAAAAAAGTTTTTAATTCAAAGACCAAAAGTTGTTTTCAAAATGACAAACTATTT
1 AATTCTCACGTAAAAAAGTATTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATCA
* * * *
55561 AGATAAAACGATACGATTTCCCAGCATGGAATGTTTAGAAAATTGCTCAAATGAATGCATCATTT
66 AAACAAAAC-ATACGATTTCCCAGCATGGAATGTTTAGAAAATTGCTCAAAGGAATGCATCATCT
* * ** * *
55626 TGAATACTCTCAGGAATCGAAGTTATAAAAGAACTCGTAAAAGTTTGATGAGTTCGGACGTTCAT
130 TGAATACTCTCAGGAATCAAAGTTATAAAAGAACTCGTAAAAGTTTAACAAGTTCGAAAGTTCAT
* * * *
55691 CCAAGAACCAATAGAGAAACAATTCTCACGTAAAAAAGTTTTCAATTCAAAGACCAAAAGTTGTT
195 CCAAGAACCAAGAGAGAAAAAATTATCACGTAAAAAAGTTTTCAATTCAAAGACAAAAAGTTGTT
* *
55756 TAGAAAATGACAAACTATTTAGACCAAATGAA
260 TACAAAATAACAAACTATTTAGACCAAATGAA
* *
55788 AATTCTCACGTAAATAAGTATTTAATTCAATGACCAAAAGTTGTTTACAAAATGACAAACTA-CA
1 AATTCTCACGTAAAAAAGTATTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATCA
** * * * **
55852 AAACCAAAA-ATGTGATTTCCCGAGCATGGAATGTTT-GACAAATTGGTCGAAGGAATGTATTGT
66 AAA-CAAAACATACGATTTCCC-AGCATGGAATGTTTAGA-AAATTGCTCAAAGGAATGCATCAT
* *
55915 CTTGAATACTCTCTA-GAATTAAAGTTATAAAAGAACTCGTAAATGTTTAACAAGTTCGAAAGTT
128 CTTGAATACTCTC-AGGAATCAAAGTTATAAAAGAACTCGTAAAAGTTTAACAAGTTCGAAAGTT
* *
55979 CGTCCAAGAACCAAGAGAGAAAAAATTATCACGTAAATAAGATTTT-AATTCAAAGACAAAAAGT
192 CATCCAAGAACCAAGAGAGAAAAAATTATCACGTAAAAAAG-TTTTCAATTCAAAGACAAAAAGT
56043 TGTTTACAAAATAACAAACTATTTAGACCAAAT
256 TGTTTACAAAATAACAAACTATTTAGACCAAAT
56076 AATGAGATTT
Statistics
Matches: 249, Mismatches: 34, Indels: 11
0.85 0.12 0.04
Matches are distributed among these distances:
290 12 0.05
291 171 0.69
292 66 0.27
ACGTcount: A:0.43, C:0.14, G:0.14, T:0.28
Consensus pattern (291 bp):
AATTCTCACGTAAAAAAGTATTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATCA
AAACAAAACATACGATTTCCCAGCATGGAATGTTTAGAAAATTGCTCAAAGGAATGCATCATCTT
GAATACTCTCAGGAATCAAAGTTATAAAAGAACTCGTAAAAGTTTAACAAGTTCGAAAGTTCATC
CAAGAACCAAGAGAGAAAAAATTATCACGTAAAAAAGTTTTCAATTCAAAGACAAAAAGTTGTTT
ACAAAATAACAAACTATTTAGACCAAATGAA
Found at i:56195 original size:215 final size:212
Alignment explanation
Indices: 55786--56522 Score: 917
Period size: 215 Copynumber: 3.4 Consensus size: 212
55776 AGACCAAATG
*
55786 AAAATTCTCACGTAAATAAG-TATTTAATTCAATGACCAAAAGTTGTTTACAAAATGACAAACTA
1 AAAATTCTCACGTAAA-AAGAT-TTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTA
** * * * * *
55850 CAAAACCAAA-AATGTGATTTCCCGAGCATGGAATGTTTGACAAATTGGTCGAAGGAATGTATTG
64 TTAGACCAAATAATGAGATTTCCCGAGCATGAAATG-TTCAAAAATTGG-CGAAGGAATGTATTG
** *
55914 TCTTGAATACTCTCTA-GAATTAAAGTTATAAAAGAACTCGTAAATGTTTAACAAGTTCGAAAGT
127 TCTTGAATACTCTC-AGGAACCAAAGTTATAAAAGAACTCGTAAATGTTTAACAAGTTCGGAAGT
55978 TCGTCCAAGAACCAAGAGAGAA
191 TCGTCCAAGAACCAAGAGAGAA
* * *
56000 AAAATTATCACGTAAATAAGATTTTAATTCAAAGACAAAAAGTTGTTTACAAAATAACAAACTAT
1 AAAATTCTCACGTAAA-AAGATTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTA-
* * * *
56065 TTAGACCAAATAATGAGATTTCCTGAGCATGAAATGTTCCAAAATTTGGCGAAGAAATGTATCGT
64 TTAGACCAAATAATGAGATTTCCCGAGCATGAAATGTT-CAAAAATTGGCGAAGGAATGTATTGT
* * * *
56130 CATT-AATACTATGAGGAACCAAAGTTATAAAAGAACTTGTAAATGTTTGACAAGTTCGGAAGTT
128 C-TTGAATACTCTCAGGAACCAAAGTTATAAAAGAACTCGTAAATGTTTAACAAGTTCGGAAGTT
56194 CGTCCAAGAACCAAGAGAGAA
192 CGTCCAAGAACCAAGAGAGAA
* *
56215 ACAATTCTCACGTTAAAAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTAT
1 AAAATTCTCACG-TAAAAAGATTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTAT
* * * * *
56280 TATACCAAATGATGCGATTTCCCGAGCATGAAATGTTCAAAAAATTGCTCGAAGGAATGGATTGT
65 TAGACCAAATAATGAGATTTCCCGAGCATGAAATGTTC-AAAAATTG-GCGAAGGAATGTATTGT
* * * *
56345 CTTGAATGCTCTCTGGAACCGAAGTTATAAAAGAACTCGTAAATGTTTAATAAGTTCGGAAGTTC
128 CTTGAATACTCTCAGGAACCAAAGTTATAAAAGAACTCGTAAATGTTTAACAAGTTCGGAAGTTC
*
56410 GTCCAAGAACTAAGAGAGAA
193 GTCCAAGAACCAAGAGAGAA
* * * ** * *
56430 ACAATTTTCACGCAAAAA-AAATTAATTCAAAGACCAAAAGTTGTTTAGAAAATGCCAAACTATT
1 AAAATTCTCACGTAAAAAGATTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTA-T
* ** *
56494 TAGACCAAATGATTCGATTTCTCGAGCAT
65 TAGACCAAATAATGAGATTTCCCGAGCAT
56523 AGAATGTGAT
Statistics
Matches: 457, Mismatches: 55, Indels: 22
0.86 0.10 0.04
Matches are distributed among these distances:
213 40 0.09
214 134 0.29
215 248 0.54
216 35 0.08
ACGTcount: A:0.42, C:0.15, G:0.16, T:0.28
Consensus pattern (212 bp):
AAAATTCTCACGTAAAAAGATTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATT
AGACCAAATAATGAGATTTCCCGAGCATGAAATGTTCAAAAATTGGCGAAGGAATGTATTGTCTT
GAATACTCTCAGGAACCAAAGTTATAAAAGAACTCGTAAATGTTTAACAAGTTCGGAAGTTCGTC
CAAGAACCAAGAGAGAA
Found at i:71874 original size:28 final size:27
Alignment explanation
Indices: 71836--72015 Score: 128
Period size: 28 Copynumber: 6.4 Consensus size: 27
71826 CCTGAATCTT
*
71836 GCTCGGATAGAGCATTATTCTACTTCTA
1 GCTCGGGTAGAGCATTATTCTA-TTCTA
* * *
71864 GCTTGGGTAGAGCATTATAT-TGAATCTT
1 GCTCGGGTAGAGCATTAT-TCT-ATTCTA
* * *
71892 GCTCAGGTAGAGCATTATTATATTTCTG
1 GCTCGGGTAGAGCATTATTCTA-TTCTA
* * * *
71920 GCTCGAGTAGAGCATTATACTGAATCTT
1 GCTCGGGTAGAGCATTATTCT-ATTCTA
*
71948 GCTCGCGTAGAGCATTATTCTATTTCTA
1 GCTCGGGTAGAGCATTATTCTA-TTCTA
* * * * * *
71976 GTTAGGGTAGAGCGTTATCCTGATTTTG
1 GCTCGGGTAGAGCATTATTCT-ATTCTA
72004 GCTCGGGTAGAG
1 GCTCGGGTAGAG
72016 TGTTAATCTG
Statistics
Matches: 118, Mismatches: 27, Indels: 14
0.74 0.17 0.09
Matches are distributed among these distances:
27 3 0.03
28 111 0.94
29 4 0.03
ACGTcount: A:0.23, C:0.16, G:0.24, T:0.36
Consensus pattern (27 bp):
GCTCGGGTAGAGCATTATTCTATTCTA
Found at i:71875 original size:56 final size:55
Alignment explanation
Indices: 71803--72015 Score: 234
Period size: 56 Copynumber: 3.8 Consensus size: 55
71793 AATGATCTGA
* * * *
71803 TTCTGGCTTGGGTAGAGCGA-GATCCTGAATCTTGCTCGGATAGAGCATTATTCTAC
1 TTCTAGCTTGGGTAGAGC-ATTATACTGAATCTTGCTCGG-TAGAGCATTATTCTAT
* *
71859 TTCTAGCTTGGGTAGAGCATTATATTGAATCTTGCTCAGGTAGAGCATTATTATAT
1 TTCTAGCTTGGGTAGAGCATTATACTGAATCTTGCTC-GGTAGAGCATTATTCTAT
* * *
71915 TTCTGGCTCGAGTAGAGCATTATACTGAATCTTGCTCGCGTAGAGCATTATTCTAT
1 TTCTAGCTTGGGTAGAGCATTATACTGAATCTTGCTCG-GTAGAGCATTATTCTAT
* * *
71971 TTCTAG-TTAGGGTAGAGCGTTATCCTG-ATTTTGGCTCGGGTAGAG
1 TTCTAGCTT-GGGTAGAGCATTATACTGAATCTT-GCTC-GGTAGAG
72016 TGTTAATCTG
Statistics
Matches: 134, Mismatches: 17, Indels: 12
0.82 0.10 0.07
Matches are distributed among these distances:
55 7 0.05
56 124 0.93
57 3 0.02
ACGTcount: A:0.23, C:0.16, G:0.25, T:0.36
Consensus pattern (55 bp):
TTCTAGCTTGGGTAGAGCATTATACTGAATCTTGCTCGGTAGAGCATTATTCTAT
Found at i:78734 original size:56 final size:55
Alignment explanation
Indices: 78670--78910 Score: 222
Period size: 56 Copynumber: 4.3 Consensus size: 55
78660 TGATGATCTG
* * *
78670 ATTT-TGGCTCGGGTAAAGTGATATCCTAAATCTTGCTCGGGTAGAGCATTATTCC
1 ATTTCTGGCTCGGGTAGAGTGATAT-CTGAATCTTGCTCGGGTAGAGCATTATTCT
* *
78725 ACTTT-TGGCTCGGATAGAGCATTATAT-TGAATCTTGCTCGGGTAGAGCATTATTCT
1 A-TTTCTGGCTCGGGTAGAG--TGATATCTGAATCTTGCTCGGGTAGAGCATTATTCT
* * * *
78781 ATTTCTAGCTCGAGTAGAGCGTTATACTGAATCTTGCTCGGGTAGAGCATTATTCT
1 ATTTCTGGCTCGGGTAGAGTGATAT-CTGAATCTTGCTCGGGTAGAGCATTATTCT
* * * * * * *
78837 ATTTCTGGCTCGGGTATAGCGTTATCTTGATTCTGGCTCAGGTAAAGCATTAATT-T
1 ATTTCTGGCTCGGGTAGAGTGATATC-TGAATCTTGCTCGGGTAGAGCATT-ATTCT
* *
78893 -GTTCTGGCTCGGTTAGAG
1 ATTTCTGGCTCGGGTAGAG
78911 CATTAATCCA
Statistics
Matches: 157, Mismatches: 21, Indels: 16
0.81 0.11 0.08
Matches are distributed among these distances:
54 3 0.02
55 20 0.13
56 126 0.80
57 3 0.02
58 5 0.03
ACGTcount: A:0.22, C:0.17, G:0.24, T:0.37
Consensus pattern (55 bp):
ATTTCTGGCTCGGGTAGAGTGATATCTGAATCTTGCTCGGGTAGAGCATTATTCT
Found at i:78917 original size:27 final size:26
Alignment explanation
Indices: 78704--78915 Score: 136
Period size: 28 Copynumber: 7.7 Consensus size: 26
78694 CCTAAATCTT
** *
78704 GCTCGGGTAGAGCATTATTCCACTTTTG
1 GCTCGGGTAGAGCATTATT--TGTTCTG
* * *
78732 GCTCGGATAGAGCATTATATTGAATCTT
1 GCTCGGGTAGAGCATTAT-TTG-TTCTG
* *
78760 GCTCGGGTAGAGCATTATTCTATTTCTA
1 GCTCGGGTAGAGCATTATT-T-GTTCTG
* * * * *
78788 GCTCGAGTAGAGCGTTATACTGAATCTT
1 GCTCGGGTAGAGCATTAT-TTG-TTCTG
*
78816 GCTCGGGTAGAGCATTATTCTATTTCTG
1 GCTCGGGTAGAGCATTATT-T-GTTCTG
* *
78844 GCTCGGGTATAGCGTTATCTTGATTCTG
1 GCTCGGGTAGAGCATTAT-TTG-TTCTG
* *
78872 GCTCAGGTAAAGCATTAATTTGTTCTG
1 GCTCGGGTAGAGCATT-ATTTGTTCTG
*
78899 GCTCGGTTAGAGCATTA
1 GCTCGGGTAGAGCATTA
78916 ATCCATTCTG
Statistics
Matches: 142, Mismatches: 31, Indels: 24
0.72 0.16 0.12
Matches are distributed among these distances:
26 1 0.01
27 19 0.13
28 118 0.83
29 4 0.03
ACGTcount: A:0.22, C:0.17, G:0.25, T:0.36
Consensus pattern (26 bp):
GCTCGGGTAGAGCATTATTTGTTCTG
Found at i:79996 original size:25 final size:24
Alignment explanation
Indices: 79960--80006 Score: 85
Period size: 25 Copynumber: 1.9 Consensus size: 24
79950 ATGGAATATG
79960 TCAATGGTCAGGTCAAAGTCAAAT
1 TCAATGGTCAGGTCAAAGTCAAAT
79984 TCAATGAGTCAGGTCAAAGTCAA
1 TCAATG-GTCAGGTCAAAGTCAA
80007 CGGGTCAATG
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
24 6 0.27
25 16 0.73
ACGTcount: A:0.38, C:0.17, G:0.21, T:0.23
Consensus pattern (24 bp):
TCAATGGTCAGGTCAAAGTCAAAT
Found at i:81798 original size:28 final size:28
Alignment explanation
Indices: 81767--81877 Score: 107
Period size: 28 Copynumber: 3.9 Consensus size: 28
81757 TGGTAGTTCG
*
81767 TCAGGACATTCTTAAATGTGGAAGTCTA
1 TCAGGACATTCTTAAATGTGGAAGTCCA
* * * *
81795 TCAGGACGTCCTTAAATGTGGAAATCCG
1 TCAGGACATTCTTAAATGTGGAAGTCCA
*
81823 TCATGG-CATTATCGTAAATGTGGAAGTCCA
1 TCA-GGACA-T-TCTTAAATGTGGAAGTCCA
* * *
81853 TTAGAACGTTCTTAAATGTGGAAGT
1 TCAGGACATTCTTAAATGTGGAAGT
81878 TTGTTTGGGT
Statistics
Matches: 65, Mismatches: 14, Indels: 8
0.75 0.16 0.09
Matches are distributed among these distances:
28 42 0.65
29 5 0.08
30 18 0.28
ACGTcount: A:0.31, C:0.15, G:0.23, T:0.31
Consensus pattern (28 bp):
TCAGGACATTCTTAAATGTGGAAGTCCA
Found at i:85126 original size:34 final size:34
Alignment explanation
Indices: 85088--85210 Score: 210
Period size: 34 Copynumber: 3.6 Consensus size: 34
85078 GTTTTAGTGT
* * *
85088 TTTGGTGTGTTGGATGGACTAGCTCTTACGTGCA
1 TTTGGTGTGTTGGATGAACTAACTCTTACGAGCA
85122 TTTGGTGTGTTGGATGAACTAACTCTTACGAGCA
1 TTTGGTGTGTTGGATGAACTAACTCTTACGAGCA
85156 TTTGGTGTGTTGGATGAACTAACTCTTACGAGCA
1 TTTGGTGTGTTGGATGAACTAACTCTTACGAGCA
*
85190 TTTGGTGTGTTGGATGGACTA
1 TTTGGTGTGTTGGATGAACTA
85211 GCTAAGTATT
Statistics
Matches: 85, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
34 85 1.00
ACGTcount: A:0.20, C:0.13, G:0.30, T:0.37
Consensus pattern (34 bp):
TTTGGTGTGTTGGATGAACTAACTCTTACGAGCA
Found at i:85589 original size:216 final size:216
Alignment explanation
Indices: 85215--87025 Score: 2139
Period size: 215 Copynumber: 8.4 Consensus size: 216
85205 GGACTAGCTA
* * * * *
85215 AGTATTCAAGGCGATCCATTCCTTCAAGCAATTTTTTGAACATTCCATGCTCGAGAAATCGCTTC
1 AGTATTCAAGACGATCCATTCCTTCGACCAATTTTTCGAACATTCCATGCTCGAGAAATCGCATC
* * * *
85280 ATTTGGT-TAAAATAGTTTGTCATTTTGTAAAAAACTTTTGGTCTTTAAATTAGAAACGTATTTA
66 ATTTGGTCTAAAA-AGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTA
* * *
85344 CGTGAGAATTGTTTCTCTCTTTGTTCTTGGACGAACTTTCGAACTTGTTAAACATTTACTAGTTC
130 CGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAACATTTACGAGTTC
85409 TTTTATAACTTCGGTTCCTAAG
195 TTTTATAACTTCGGTTCCTAAG
* *
85431 AGTATTCAAGACGATCCATTCCTTCGACCAATTTTTTGAACTTTCCATGCTCGAGAAATCGCATC
1 AGTATTCAAGACGATCCATTCCTTCGACCAATTTTTCGAACATTCCATGCTCGAGAAATCGCATC
* *
85496 ATTTGGTCTAAAAAGTTTGTCATTTTGTGAACAACTTTTGGT-TTTAGAATTAAAAACTAATTTA
66 ATTTGGTCTAAAAAGTTTGTCATTTTGTAAACAACTTTTGGTCTTT-GAATTAAAAACTTATTTA
* * * * *
85560 TGTGAGAATTGTTTCTCTCTAGGTTCTTGGAGGAA-TTTCCGGATTTGTCAAACATTTACGAGTT
130 CGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTT-CGAACTTGTCAAACATTTACGAGTT
* *
85624 CTTTTATAACTTCGGTTCTTGAG
194 CTTTTATAACTTCGGTTCCTAAG
* * * ** * *
85647 AGTATTCAAGATGATGCATTCCTTCGATCAATTTTTCGAACATTAAATGCTCAAGAAATAGCATC
1 AGTATTCAAGACGATCCATTCCTTCGACCAATTTTTCGAACATTCCATGCTCGAGAAATCGCATC
* *
85712 ATTTGGTCTAAAAAGTTTGTCATTTTGTAAACAACTTCTGGT-TTTAGAATTAAAAACTAATTTA
66 ATTTGGTCTAAAAAGTTTGTCATTTTGTAAACAACTTTTGGTCTTT-GAATTAAAAACTTATTTA
* * *
85776 CGTGAGAATTGTTTCTC-CATTGGTTCTTAGACGAACTTCCGAACTTGT-TAA-ATTTACGAGTT
130 CGTGAGAATTGTTTCTCTC-TTGGTTCTTGGACGAACTTTCGAACTTGTCAAACATTTACGAGTT
* * *
85838 TTTTTATAACTTTGGTTCCTGAG
194 CTTTTATAACTTCGGTTCCTAAG
* * * * *
85861 AGTATTCAAGACGATCCATTCCTTTGACCAATTTTTCGAAGATTCCATGATCTAGAAATCACATC
1 AGTATTCAAGACGATCCATTCCTTCGACCAATTTTTCGAACATTCCATGCTCGAGAAATCGCATC
* *
85926 ATTTGGTC-AAAATAGTTTGTCATTTTGTAAATAACTTTTGGTCTTTGAATTAAAAACTTTTTTA
66 ATTTGGTCTAAAA-AGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTA
* * * * * * *
85990 CGTGAGAATTCTTTCTCTCTTGGTTCTTGGACAAAC-TTCTGAGCTTGTCTAGCATTTACTAGTC
130 CGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTTC-GAACTTGTCAAACATTTACGAGTT
* *
86054 CTTTTATAACTTCGGTTCCTGAT
194 CTTTTATAACTTCGGTTCCTAAG
* * ** * * *
86077 AGTAGTCAAGACAATCCATTATTTCGACCAATTTTTCGAACATTCCATGATCAAGAAATCACATC
1 AGTATTCAAGACGATCCATTCCTTCGACCAATTTTTCGAACATTCCATGCTCGAGAAATCGCATC
* * * *
86142 ATTTGGTAT-AATAGTTTGTTATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTTTTTAC
66 ATTTGGTCTAAAAAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTAC
* * * * * * *
86206 GAGAGAATTGTATCGCTCTTGGTTATTGGATGAACTTTCGAACTTGTTAAACATTTATGAGTTCT
131 GTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAACATTTACGAGTTCT
*
86271 TTTATAACTTCGATTCCTAAG
196 TTTATAACTTCGGTTCCTAAG
* * * * * * *
86292 AGTATTCAAGACGATGCATTCATTTGAGCAATTTTCCGAACATTCCATGCT-GGGAAATCACATC
1 AGTATTCAAGACGATCCATTCCTTCGACCAATTTTTCGAACATTCCATGCTCGAGAAATCGCATC
* * * *
86356 ATATGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAAGTTTTTTAC
66 ATTTGGTCTAAAAAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTAC
* * * *
86421 GTGAGAATTGTTTCTCTATTGGTTCTTAGATGAA-TTTCTGAACTCGTCAAACATTTACGAGTTC
131 GTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTTC-GAACTTGTCAAACATTTACGAGTTC
* * *
86485 TTTTATAACTTCGGTTCTTGAT
195 TTTTATAACTTCGGTTCCTAAG
* * * * * *
86507 TGTATTCAAGACAATCCATTTCTTTGACCAATTTTTCGAACATTCCATGC-CTGGGAAATCGCTT
1 AGTATTCAAGACGATCCATTCCTTCGACCAATTTTTCGAACATTCCATGCTC-GAGAAATCGCAT
* * * *
86571 AATTTGGTCTAAAAAGTTTGTAATTTTGTAAATAACTTTTGGTCTTTGAATTAAATACTTATTTA
65 CATTTGGTCTAAAAAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTA
* * * * * * ** * ** *
86636 -ATGAGAATTGTTTCCCTCTTGGCTCTTGGATGAACATACGGCCTAGTCAAAGTTTTACAAGTT-
130 CGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAACATTTACGAGTTC
86699 TTGTTATAACTTCGGTTCCTTAA-
195 TT-TTATAACTTCGGTTCC-TAAG
* * * * * *
86722 AGTATTCAAGACGATCCTTTCTTTTGAGCAATTTTTCGAACATTCCATGAT-GGGAAATCGCATC
1 AGTATTCAAGACGATCCATTCCTTCGACCAATTTTTCGAACATTCCATGCTCGAGAAATCGCATC
*
86786 ATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACCTTTT-GTCTTTGAATTAAAAACTTATTTA
66 ATTTGGTCTAAAAAGTTTGTCATTTTGTAAACAA-CTTTTGGTCTTTGAATTAAAAACTTATTTA
* ** * * * *
86850 TGTGAGAATTGTCGCTCTCTTGGTTCTTGGACAAACTTCCTAACTTGTCAAACATTTACGAATTC
130 CGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAACATTTACGAGTTC
* *
86915 ATTTATAACTTCGATTCCTAAG
195 TTTTATAACTTCGGTTCCTAAG
* * * * * *
86937 AGTATTTAAGATGATCCATTCCTTCGACTAATTTTTCGAAAATTTCATGCTC-AGGAAATTGCAT
1 AGTATTCAAGACGATCCATTCCTTCGACCAATTTTTCGAACATTCCATGCTCGA-GAAATCGCAT
* *
87001 CACTTGGTTTAAAAAGTTTGTCATT
65 CATTTGGTCTAAAAAGTTTGTCATT
87026 GATGCGGGCA
Statistics
Matches: 1364, Mismatches: 204, Indels: 54
0.84 0.13 0.03
Matches are distributed among these distances:
213 6 0.00
214 266 0.20
215 548 0.40
216 537 0.39
217 7 0.01
ACGTcount: A:0.28, C:0.16, G:0.15, T:0.40
Consensus pattern (216 bp):
AGTATTCAAGACGATCCATTCCTTCGACCAATTTTTCGAACATTCCATGCTCGAGAAATCGCATC
ATTTGGTCTAAAAAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTAC
GTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAACATTTACGAGTTCT
TTTATAACTTCGGTTCCTAAG
Found at i:87152 original size:15 final size:15
Alignment explanation
Indices: 87134--87167 Score: 52
Period size: 15 Copynumber: 2.3 Consensus size: 15
87124 CACACACGAC
87134 GCGAACACT-GATGTT
1 GCGAACACTCG-TGTT
87149 GCGAACACTCGTGTT
1 GCGAACACTCGTGTT
87164 GCGA
1 GCGA
87168 GCATAGAGGA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
15 17 0.94
16 1 0.06
ACGTcount: A:0.24, C:0.24, G:0.29, T:0.24
Consensus pattern (15 bp):
GCGAACACTCGTGTT
Found at i:94020 original size:58 final size:58
Alignment explanation
Indices: 93892--94030 Score: 176
Period size: 58 Copynumber: 2.4 Consensus size: 58
93882 TTGTTATTAA
* * *
93892 ATTTTAATA-AGATTATTATTAAATATATTTAATAAATAATAATAAATAATTTAATCAT
1 ATTTTAATATA-ATTATTATTAAATAAATTTAATAAATAATAATAAATAATTTAATAAC
* * *
93950 ATTTTAACATAATTATTATTAAATAAAATTTTAT-AA-AATAATATATAATTTAATAAC
1 ATTTTAATATAATTATTATTAAAT-AAATTTAATAAATAATAATAAATAATTTAATAAC
94007 ATTCTTAATATAATTATTATTAAA
1 ATT-TTAATATAATTATTATTAAA
94031 ATATGAATTA
Statistics
Matches: 71, Mismatches: 7, Indels: 6
0.85 0.08 0.07
Matches are distributed among these distances:
57 21 0.30
58 42 0.59
59 8 0.11
ACGTcount: A:0.51, C:0.03, G:0.01, T:0.45
Consensus pattern (58 bp):
ATTTTAATATAATTATTATTAAATAAATTTAATAAATAATAATAAATAATTTAATAAC
Found at i:102999 original size:8 final size:8
Alignment explanation
Indices: 102954--103017 Score: 53
Period size: 8 Copynumber: 8.2 Consensus size: 8
102944 TTATGGCTAA
*
102954 ATGTGACT
1 ATGTGAAT
102962 ATGTG-AT
1 ATGTGAAT
*
102969 -T-TGAAC
1 ATGTGAAT
*
102975 ATGTGAAAA
1 ATGTG-AAT
102984 ATGTGAAT
1 ATGTGAAT
102992 ATGTGAAT
1 ATGTGAAT
* *
103000 TTGTGGAT
1 ATGTGAAT
103008 ATGTGAAT
1 ATGTGAAT
103016 AT
1 AT
103018 TGATATCTAT
Statistics
Matches: 44, Mismatches: 8, Indels: 8
0.73 0.13 0.13
Matches are distributed among these distances:
5 2 0.05
6 2 0.05
7 2 0.05
8 31 0.70
9 7 0.16
ACGTcount: A:0.34, C:0.03, G:0.25, T:0.38
Consensus pattern (8 bp):
ATGTGAAT
Found at i:104133 original size:26 final size:26
Alignment explanation
Indices: 104093--104178 Score: 145
Period size: 26 Copynumber: 3.3 Consensus size: 26
104083 CTTTGATCAC
* *
104093 ATGTTCTTGATTTGTGTTTTTAATGG
1 ATGTTCTTAATTTGTGTTTTCAATGG
*
104119 ATGCTCTTAATTTGTGTTTTCAATGG
1 ATGTTCTTAATTTGTGTTTTCAATGG
104145 ATGTTCTTAATTTGTGTTTTCAATGG
1 ATGTTCTTAATTTGTGTTTTCAATGG
104171 ATGTTCTT
1 ATGTTCTT
104179 GATCAATTGG
Statistics
Matches: 56, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 56 1.00
ACGTcount: A:0.17, C:0.08, G:0.20, T:0.55
Consensus pattern (26 bp):
ATGTTCTTAATTTGTGTTTTCAATGG
Found at i:109619 original size:17 final size:18
Alignment explanation
Indices: 109587--109621 Score: 54
Period size: 17 Copynumber: 2.0 Consensus size: 18
109577 AAATGATACG
109587 ATGATAAAATAAAATGCA
1 ATGATAAAATAAAATGCA
*
109605 ATGATAATA-AAAATGCA
1 ATGATAAAATAAAATGCA
109622 TTAAAACTAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 8 0.50
18 8 0.50
ACGTcount: A:0.60, C:0.06, G:0.11, T:0.23
Consensus pattern (18 bp):
ATGATAAAATAAAATGCA
Found at i:124167 original size:21 final size:21
Alignment explanation
Indices: 124141--124199 Score: 102
Period size: 21 Copynumber: 2.9 Consensus size: 21
124131 AATGACTCTG
*
124141 TTTGGTAAGTATTTGTTAATA
1 TTTGGTAAGTACTTGTTAATA
124162 TTTGGTAAGTACTTGTTAATA
1 TTTGGTAAGTACTTGTTAATA
124183 TTTGGTAAGTAC-TGTTA
1 TTTGGTAAGTACTTGTTA
124200 TCCAATGCTA
Statistics
Matches: 37, Mismatches: 1, Indels: 1
0.95 0.03 0.03
Matches are distributed among these distances:
20 5 0.14
21 32 0.86
ACGTcount: A:0.27, C:0.03, G:0.20, T:0.49
Consensus pattern (21 bp):
TTTGGTAAGTACTTGTTAATA
Found at i:139591 original size:17 final size:17
Alignment explanation
Indices: 139561--139602 Score: 52
Period size: 16 Copynumber: 2.5 Consensus size: 17
139551 TTATTTCATC
*
139561 ATTT-TTTTAAAAAAAT
1 ATTTATTTTAAAAAAAA
139577 A-TTATTTTAACAAAAAA
1 ATTTATTTTAA-AAAAAA
139594 ATTTATTTT
1 ATTTATTTT
139603 GGCATAATTA
Statistics
Matches: 22, Mismatches: 1, Indels: 4
0.81 0.04 0.15
Matches are distributed among these distances:
15 2 0.09
16 7 0.32
17 6 0.27
18 7 0.32
ACGTcount: A:0.48, C:0.02, G:0.00, T:0.50
Consensus pattern (17 bp):
ATTTATTTTAAAAAAAA
Found at i:146174 original size:19 final size:20
Alignment explanation
Indices: 146150--146188 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 20
146140 AGAAGTTATG
146150 ACTTGG-GACTTCTACCGAT
1 ACTTGGAGACTTCTACCGAT
*
146169 ACTTGGAAGGCTTCTACCGA
1 ACTTGG-AGACTTCTACCGA
146189 AGCAAGTCAA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 6 0.35
21 11 0.65
ACGTcount: A:0.23, C:0.26, G:0.23, T:0.28
Consensus pattern (20 bp):
ACTTGGAGACTTCTACCGAT
Found at i:152542 original size:16 final size:16
Alignment explanation
Indices: 152512--152558 Score: 62
Period size: 16 Copynumber: 3.0 Consensus size: 16
152502 TTTAACAATG
152512 TATATTTTT-TACATA
1 TATATTTTTATACATA
*
152527 T-TTTTTTATATACATA
1 TATATTTT-TATACATA
152543 TATATTTTTATACATA
1 TATATTTTTATACATA
152559 GATTAGTAAA
Statistics
Matches: 27, Mismatches: 2, Indels: 5
0.79 0.06 0.15
Matches are distributed among these distances:
14 5 0.19
15 2 0.07
16 15 0.56
17 5 0.19
ACGTcount: A:0.34, C:0.06, G:0.00, T:0.60
Consensus pattern (16 bp):
TATATTTTTATACATA
Found at i:156011 original size:26 final size:26
Alignment explanation
Indices: 155982--156033 Score: 104
Period size: 26 Copynumber: 2.0 Consensus size: 26
155972 TTATCTAAAA
155982 CGTAAGGCTTAGTTTAAAAAGAAAGG
1 CGTAAGGCTTAGTTTAAAAAGAAAGG
156008 CGTAAGGCTTAGTTTAAAAAGAAAGG
1 CGTAAGGCTTAGTTTAAAAAGAAAGG
156034 TAAGTACGTG
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.42, C:0.08, G:0.27, T:0.23
Consensus pattern (26 bp):
CGTAAGGCTTAGTTTAAAAAGAAAGG
Found at i:163649 original size:12 final size:12
Alignment explanation
Indices: 163634--163662 Score: 58
Period size: 12 Copynumber: 2.4 Consensus size: 12
163624 AGAAAAAACA
163634 AAGCAATGGGGT
1 AAGCAATGGGGT
163646 AAGCAATGGGGT
1 AAGCAATGGGGT
163658 AAGCA
1 AAGCA
163663 CATATGTATA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.38, C:0.10, G:0.38, T:0.14
Consensus pattern (12 bp):
AAGCAATGGGGT
Found at i:163833 original size:51 final size:51
Alignment explanation
Indices: 163772--163874 Score: 206
Period size: 51 Copynumber: 2.0 Consensus size: 51
163762 ATAAGGTGAG
163772 CTCAAATATGTATTCAGTCATGTAACATATCAAGTACAAAGCATTACATTT
1 CTCAAATATGTATTCAGTCATGTAACATATCAAGTACAAAGCATTACATTT
163823 CTCAAATATGTATTCAGTCATGTAACATATCAAGTACAAAGCATTACATTT
1 CTCAAATATGTATTCAGTCATGTAACATATCAAGTACAAAGCATTACATTT
163874 C
1 C
163875 ATATATTTTA
Statistics
Matches: 52, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
51 52 1.00
ACGTcount: A:0.39, C:0.18, G:0.10, T:0.33
Consensus pattern (51 bp):
CTCAAATATGTATTCAGTCATGTAACATATCAAGTACAAAGCATTACATTT
Found at i:167651 original size:193 final size:194
Alignment explanation
Indices: 167313--167750 Score: 673
Period size: 193 Copynumber: 2.3 Consensus size: 194
167303 TGAACCGACA
* *
167313 CGATGGCTGGGGTACCGCATATGTTGCAAGTCCTTGATAGCTCATGTGAGCAGCATCGTGAGTCG
1 CGATGGCTGGGGTACCGCATATGTTGCAAGTCCTCGACAGCTCATGTGAGCAGCATC-TGAGTCG
*
167378 AAAAATGAGAAATGAATTCAAGAATGGATTATAGAACCTACGATGACTGAGACTTATGCATAAGT
65 AAAAATGAGAAATGAATCCAAGAATGGATTATAGAACCTACGATGACTGAGACTTATGCATAAGT
* * *
167443 GCATATTCTCGATAGCTCGTGTGAGCAGCATCATTAGGGAACATTTATATGCACAGATACCGTAT
130 GCATATTCCCGATAGCTCGTGTGAGCAACATCATTAGGGAACAATTATATGCACAGATACCGTAT
* * *
167508 TGATGGCTGGGGTACCGCATATGTTACAAGTCCTCGACAACTCATGTGAGCAGCAT-T-AGTCGA
1 CGATGGCTGGGGTACCGCATATGTTGCAAGTCCTCGACAGCTCATGTGAGCAGCATCTGAGTCG-
** * *
167571 AAAAATGAGAAATGAATCCAAGAATGGATTATAGGCCCTATGATGGCTGAGACTTATGCATAAGT
65 AAAAATGAGAAATGAATCCAAGAATGGATTATAGAACCTACGATGACTGAGACTTATGCATAAGT
* *
167636 GCATATTCCCGATAGCTCGTGTGAGCAACATCGTTAGGGAACAATTATATGCACAGATATCGTAT
130 GCATATTCCCGATAGCTCGTGTGAGCAACATCATTAGGGAACAATTATATGCACAGATACCGTAT
* * * *
167701 CAATGGCTGAGGTACCGCATATGTTGCGAGTCCTCGACAGCTCGTGTGAG
1 CGATGGCTGGGGTACCGCATATGTTGCAAGTCCTCGACAGCTCATGTGAG
167751 TAGTACTATG
Statistics
Matches: 220, Mismatches: 22, Indels: 4
0.89 0.09 0.02
Matches are distributed among these distances:
192 5 0.02
193 164 0.75
195 51 0.23
ACGTcount: A:0.30, C:0.18, G:0.25, T:0.26
Consensus pattern (194 bp):
CGATGGCTGGGGTACCGCATATGTTGCAAGTCCTCGACAGCTCATGTGAGCAGCATCTGAGTCGA
AAAATGAGAAATGAATCCAAGAATGGATTATAGAACCTACGATGACTGAGACTTATGCATAAGTG
CATATTCCCGATAGCTCGTGTGAGCAACATCATTAGGGAACAATTATATGCACAGATACCGTAT
Found at i:169570 original size:29 final size:29
Alignment explanation
Indices: 169515--169570 Score: 78
Period size: 29 Copynumber: 1.9 Consensus size: 29
169505 CATCATAGGT
*
169515 AAAAATTTTAAATCCAAAAAAATCAATGC
1 AAAAATTTTAAATCCAAAAAAAGCAATGC
*
169544 AAAAATTTT-AATCTAAAAATAAGCAAT
1 AAAAATTTTAAATCCAAAAA-AAGCAAT
169571 TTTAAATTCA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
28 9 0.38
29 15 0.62
ACGTcount: A:0.59, C:0.11, G:0.04, T:0.27
Consensus pattern (29 bp):
AAAAATTTTAAATCCAAAAAAAGCAATGC
Found at i:175051 original size:9 final size:9
Alignment explanation
Indices: 175037--175068 Score: 50
Period size: 9 Copynumber: 3.8 Consensus size: 9
175027 GGTTCAACTA
175037 GATGAAGAG
1 GATGAAGAG
175046 GATG-A-AG
1 GATGAAGAG
175053 GATGAAGAG
1 GATGAAGAG
175062 GATGAAG
1 GATGAAG
175069 GAAAAGAAAA
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
7 6 0.29
8 2 0.10
9 13 0.62
ACGTcount: A:0.44, C:0.00, G:0.44, T:0.12
Consensus pattern (9 bp):
GATGAAGAG
Found at i:175058 original size:16 final size:16
Alignment explanation
Indices: 175037--175070 Score: 68
Period size: 16 Copynumber: 2.1 Consensus size: 16
175027 GGTTCAACTA
175037 GATGAAGAGGATGAAG
1 GATGAAGAGGATGAAG
175053 GATGAAGAGGATGAAG
1 GATGAAGAGGATGAAG
175069 GA
1 GA
175071 AAAGAAAATA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.44, C:0.00, G:0.44, T:0.12
Consensus pattern (16 bp):
GATGAAGAGGATGAAG
Found at i:176312 original size:26 final size:26
Alignment explanation
Indices: 176252--176322 Score: 72
Period size: 29 Copynumber: 2.5 Consensus size: 26
176242 TTTTAGCAAA
*
176252 TTTTAATTAGAGAGAAATTGATGATTT
1 TTTTAATTTGA-AGAAATTGATGATTT
176279 TGAGTTTAATTTGAAGAAATTGAT-AGTTT
1 T---TTTAATTTGAAGAAATTGATGA-TTT
176308 TTTTAATTTGTAAGA
1 TTTTAATTTG-AAGA
176323 CTGGACTATT
Statistics
Matches: 38, Mismatches: 1, Indels: 10
0.78 0.02 0.20
Matches are distributed among these distances:
26 9 0.24
27 5 0.13
28 1 0.03
29 14 0.37
30 9 0.24
ACGTcount: A:0.35, C:0.00, G:0.18, T:0.46
Consensus pattern (26 bp):
TTTTAATTTGAAGAAATTGATGATTT
Found at i:177374 original size:186 final size:186
Alignment explanation
Indices: 177059--177430 Score: 708
Period size: 186 Copynumber: 2.0 Consensus size: 186
177049 AAAAAAAAAA
177059 TGAGGGTTAAATGCCGCATCAAAGTTAATCCGGACAATACCTTCTCCAAGAGGTTTCCATGCCAG
1 TGAGGGTTAAATGCCGCATCAAAGTTAATCCGGACAATACCTTCTCCAAGAGGTTTCCATGCCAG
*
177124 TGAGGGTACCACACTGGTATGTGTCTTCTTCACCAGCTCTTGATTTTCTCTAATAAATGATAAAA
66 TGAGGGTACCACACTGGTATGTGTCTTCTTCACCAGCTCTTGATTTTCTCTAATAAAAGATAAAA
177189 TGCTGATTGCTAAATCTTTCCCTGAATGCTTTTTCTTTTCATGAATCACCTGGCTT
131 TGCTGATTGCTAAATCTTTCCCTGAATGCTTTTTCTTTTCATGAATCACCTGGCTT
*
177245 TGAGGGTTAAATGCCGCATCAAAGTTAATCCGGACAATACCTTCTCCATGAGGTTTCCATGCCAG
1 TGAGGGTTAAATGCCGCATCAAAGTTAATCCGGACAATACCTTCTCCAAGAGGTTTCCATGCCAG
* *
177310 TGAGGGTACCGCATTGGTATGTGTCTTCTTCACCAGCTCTTGATTTTCTCTAATAAAAGATAAAA
66 TGAGGGTACCACACTGGTATGTGTCTTCTTCACCAGCTCTTGATTTTCTCTAATAAAAGATAAAA
177375 TGCTGATTGCTAAATCTTTCCCTGAATGCTTTTTCTTTTCATGAATCACCTGGCTT
131 TGCTGATTGCTAAATCTTTCCCTGAATGCTTTTTCTTTTCATGAATCACCTGGCTT
177431 CTAGCATTCC
Statistics
Matches: 182, Mismatches: 4, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
186 182 1.00
ACGTcount: A:0.25, C:0.22, G:0.18, T:0.35
Consensus pattern (186 bp):
TGAGGGTTAAATGCCGCATCAAAGTTAATCCGGACAATACCTTCTCCAAGAGGTTTCCATGCCAG
TGAGGGTACCACACTGGTATGTGTCTTCTTCACCAGCTCTTGATTTTCTCTAATAAAAGATAAAA
TGCTGATTGCTAAATCTTTCCCTGAATGCTTTTTCTTTTCATGAATCACCTGGCTT
Found at i:183420 original size:12 final size:12
Alignment explanation
Indices: 183409--183449 Score: 55
Period size: 12 Copynumber: 3.4 Consensus size: 12
183399 TTCATCATCT
*
183409 TCTTCAGGATCT
1 TCTTCAGGATCC
* *
183421 TCCTCAAGATCC
1 TCTTCAGGATCC
183433 TCTTCAGGATCC
1 TCTTCAGGATCC
183445 TCTTC
1 TCTTC
183450 TTCTTCATGA
Statistics
Matches: 24, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
12 24 1.00
ACGTcount: A:0.17, C:0.34, G:0.12, T:0.37
Consensus pattern (12 bp):
TCTTCAGGATCC
Found at i:183456 original size:18 final size:18
Alignment explanation
Indices: 183433--183472 Score: 62
Period size: 18 Copynumber: 2.2 Consensus size: 18
183423 CTCAAGATCC
183433 TCTTCAGGATCCTCTTCT
1 TCTTCAGGATCCTCTTCT
* *
183451 TCTTCATGATCTTCTTCT
1 TCTTCAGGATCCTCTTCT
183469 TCTT
1 TCTT
183473 TAGCTTGCTA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.10, C:0.30, G:0.07, T:0.53
Consensus pattern (18 bp):
TCTTCAGGATCCTCTTCT
Found at i:187923 original size:26 final size:25
Alignment explanation
Indices: 187891--187940 Score: 73
Period size: 25 Copynumber: 2.0 Consensus size: 25
187881 GTATGAAATA
* *
187891 TTAATAATTTAAAATAAATTAAAAAG
1 TTAATAAATT-AAATAAATAAAAAAG
187917 TTAATAAATTAAATAAATAAAAAA
1 TTAATAAATTAAATAAATAAAAAA
187941 TTAGAAAATA
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
25 13 0.59
26 9 0.41
ACGTcount: A:0.66, C:0.00, G:0.02, T:0.32
Consensus pattern (25 bp):
TTAATAAATTAAATAAATAAAAAAG
Found at i:187949 original size:24 final size:24
Alignment explanation
Indices: 187902--187953 Score: 63
Period size: 24 Copynumber: 2.2 Consensus size: 24
187892 TAATAATTTA
*
187902 AAATAAATTAAAAAGTTAATAAATT
1 AAATAAATTAAAAAATTAATAAA-T
187927 AAATAAA-TAAAAAATTAGA-AAAT
1 AAATAAATTAAAAAATTA-ATAAAT
187950 AAAT
1 AAAT
187954 TCTTACCACC
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
23 5 0.20
24 12 0.48
25 8 0.32
ACGTcount: A:0.69, C:0.00, G:0.04, T:0.27
Consensus pattern (24 bp):
AAATAAATTAAAAAATTAATAAAT
Found at i:197363 original size:23 final size:23
Alignment explanation
Indices: 197337--197389 Score: 79
Period size: 23 Copynumber: 2.3 Consensus size: 23
197327 TTTATGGTGC
*
197337 ATTTTGTTTGGCCTTTGTGGCAT
1 ATTTTGTTTAGCCTTTGTGGCAT
* *
197360 ATTTCGTTTAGCCTTTGTGGCGT
1 ATTTTGTTTAGCCTTTGTGGCAT
197383 ATTTTGT
1 ATTTTGT
197390 GTTACATCTA
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
23 26 1.00
ACGTcount: A:0.09, C:0.13, G:0.25, T:0.53
Consensus pattern (23 bp):
ATTTTGTTTAGCCTTTGTGGCAT
Found at i:200088 original size:2 final size:2
Alignment explanation
Indices: 200081--200110 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
200071 TATTTATAAC
200081 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
200111 AGCAGTTGTA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:225306 original size:24 final size:24
Alignment explanation
Indices: 225278--225329 Score: 77
Period size: 24 Copynumber: 2.2 Consensus size: 24
225268 TTTCTAGAAG
* *
225278 ATTTAGTATTTATTAGTATAATAT
1 ATTTAGCATTTATTAGCATAATAT
*
225302 ATTTAGCATTTATTAGCATAATTT
1 ATTTAGCATTTATTAGCATAATAT
225326 ATTT
1 ATTT
225330 TTACCTACAA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.35, C:0.04, G:0.08, T:0.54
Consensus pattern (24 bp):
ATTTAGCATTTATTAGCATAATAT
Found at i:228164 original size:20 final size:21
Alignment explanation
Indices: 228123--228165 Score: 63
Period size: 21 Copynumber: 2.1 Consensus size: 21
228113 TTTAGGGTTT
228123 TTTAAATTAAGGTTTGTTTAA
1 TTTAAATTAAGGTTTGTTTAA
228144 TTTAAATT-AGGATTT-TTTAA
1 TTTAAATTAAGG-TTTGTTTAA
228164 TT
1 TT
228166 AGGGTTTATT
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
20 10 0.48
21 11 0.52
ACGTcount: A:0.33, C:0.00, G:0.12, T:0.56
Consensus pattern (21 bp):
TTTAAATTAAGGTTTGTTTAA
Found at i:228172 original size:35 final size:34
Alignment explanation
Indices: 228118--228213 Score: 131
Period size: 35 Copynumber: 2.8 Consensus size: 34
228108 TTAGTTTTAG
228118 GGTTTTTTAAATTAAGGTTTGTTTAATTTAAATTA
1 GGTTTTTT-AATTAAGGTTTGTTTAATTTAAATTA
* *
228153 GGATTTTTTAATTAGGGTTTATTTAATTTAAATTA
1 GG-TTTTTTAATTAAGGTTTGTTTAATTTAAATTA
* *
228188 GG-GTTTAAATTAAGGTTTGTTTAATT
1 GGTTTTTTAATTAAGGTTTGTTTAATT
228214 CAAAACGTGT
Statistics
Matches: 54, Mismatches: 6, Indels: 4
0.84 0.09 0.06
Matches are distributed among these distances:
33 20 0.37
35 28 0.52
36 6 0.11
ACGTcount: A:0.30, C:0.00, G:0.17, T:0.53
Consensus pattern (34 bp):
GGTTTTTTAATTAAGGTTTGTTTAATTTAAATTA
Found at i:228179 original size:15 final size:15
Alignment explanation
Indices: 228138--228180 Score: 52
Period size: 14 Copynumber: 2.8 Consensus size: 15
228128 ATTAAGGTTT
228138 GTTTAATTTAAATTAGG
1 GTTT-ATTT-AATTAGG
*
228155 ATTT-TTTAATTAGG
1 GTTTATTTAATTAGG
228169 GTTTATTTAATT
1 GTTTATTTAATT
228181 TAAATTAGGG
Statistics
Matches: 23, Mismatches: 2, Indels: 4
0.79 0.07 0.14
Matches are distributed among these distances:
14 10 0.43
15 10 0.43
17 3 0.13
ACGTcount: A:0.30, C:0.00, G:0.14, T:0.56
Consensus pattern (15 bp):
GTTTATTTAATTAGG
Found at i:228571 original size:16 final size:17
Alignment explanation
Indices: 228545--228576 Score: 57
Period size: 16 Copynumber: 1.9 Consensus size: 17
228535 GCTTTTGTTA
228545 AATTAGAGTTTTTTTTT
1 AATTAGAGTTTTTTTTT
228562 AATTAG-GTTTTTTTT
1 AATTAGAGTTTTTTTT
228577 ATTTAAATTA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 9 0.60
17 6 0.40
ACGTcount: A:0.22, C:0.00, G:0.12, T:0.66
Consensus pattern (17 bp):
AATTAGAGTTTTTTTTT
Found at i:228772 original size:30 final size:31
Alignment explanation
Indices: 228716--228777 Score: 90
Period size: 30 Copynumber: 2.0 Consensus size: 31
228706 CAATTTAAAG
*
228716 TCTAAAATTTCAAAACTAACATATCTAAATT
1 TCTAAAAATTCAAAACTAACATATCTAAATT
* *
228747 TCTAAAAATTGAAAAC-AATATATCTAAATT
1 TCTAAAAATTCAAAACTAACATATCTAAATT
228777 T
1 T
228778 TGCATTTTTG
Statistics
Matches: 28, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
30 14 0.50
31 14 0.50
ACGTcount: A:0.50, C:0.13, G:0.02, T:0.35
Consensus pattern (31 bp):
TCTAAAAATTCAAAACTAACATATCTAAATT
Found at i:228992 original size:30 final size:29
Alignment explanation
Indices: 228908--228989 Score: 130
Period size: 29 Copynumber: 2.8 Consensus size: 29
228898 TGTGTTTTGA
228908 AAAAAATAATTTTGAGAAGATGGGTTCTG
1 AAAAAATAATTTTGAGAAGATGGGTTCTG
*
228937 AAAAAATAATTTTCAGAAGATGGGTTCTG
1 AAAAAATAATTTTGAGAAGATGGGTTCTG
*
228966 AAAAAATTATTTTGATG-AGATGGG
1 AAAAAATAATTTTGA-GAAGATGGG
228990 GTTGAAATTT
Statistics
Matches: 49, Mismatches: 3, Indels: 2
0.91 0.06 0.04
Matches are distributed among these distances:
29 48 0.98
30 1 0.02
ACGTcount: A:0.41, C:0.04, G:0.23, T:0.32
Consensus pattern (29 bp):
AAAAAATAATTTTGAGAAGATGGGTTCTG
Found at i:240458 original size:63 final size:63
Alignment explanation
Indices: 240386--240513 Score: 220
Period size: 63 Copynumber: 2.0 Consensus size: 63
240376 TTTCTACCAT
* *
240386 AGTTTTGCTATGCTCTTCAAGAGACAAATTATCCATTTTTTCTTGTACCACAATATCAGTGCC
1 AGTTTTGCTACGCTCTTCAAGAGACAAATTATCCATTTTTTCTTCTACCACAATATCAGTGCC
* *
240449 AGTTTTGCTACGCTCTTCAAGAGACAAATTATCCATTTTTTCTTCTAGCTCAATATCAGTGCC
1 AGTTTTGCTACGCTCTTCAAGAGACAAATTATCCATTTTTTCTTCTACCACAATATCAGTGCC
240512 AG
1 AG
240514 CAGACAGACC
Statistics
Matches: 61, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
63 61 1.00
ACGTcount: A:0.27, C:0.23, G:0.13, T:0.38
Consensus pattern (63 bp):
AGTTTTGCTACGCTCTTCAAGAGACAAATTATCCATTTTTTCTTCTACCACAATATCAGTGCC
Found at i:246055 original size:32 final size:33
Alignment explanation
Indices: 245994--246061 Score: 111
Period size: 35 Copynumber: 2.0 Consensus size: 33
245984 ACAAGATTAC
245994 AATATCAATCTAATCTTAAGATATGATTCTCCCTT
1 AATATCAATCTAATCTT-A-ATATGATTCTCCCTT
246029 AATATCAATCTAATCTT-ATATGATTCTCCCTT
1 AATATCAATCTAATCTTAATATGATTCTCCCTT
246061 A
1 A
246062 TCTTCTAAGA
Statistics
Matches: 33, Mismatches: 0, Indels: 3
0.92 0.00 0.08
Matches are distributed among these distances:
32 16 0.48
35 17 0.52
ACGTcount: A:0.34, C:0.21, G:0.04, T:0.41
Consensus pattern (33 bp):
AATATCAATCTAATCTTAATATGATTCTCCCTT
Found at i:254022 original size:27 final size:24
Alignment explanation
Indices: 253992--254052 Score: 59
Period size: 24 Copynumber: 2.4 Consensus size: 24
253982 GCAGTAAATA
253992 AAATAAAGTACCAAATCACCAGTCAAC
1 AAAT-AAG-ACCAAA-CACCAGTCAAC
* **
254019 AAATTAGACCTCACACCAGTCAAC
1 AAATAAGACCAAACACCAGTCAAC
*
254043 AAATTAGACC
1 AAATAAGACC
254053 TCACACCACT
Statistics
Matches: 31, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
24 21 0.68
25 4 0.13
26 2 0.06
27 4 0.13
ACGTcount: A:0.48, C:0.28, G:0.08, T:0.16
Consensus pattern (24 bp):
AAATAAGACCAAACACCAGTCAAC
Found at i:254035 original size:24 final size:24
Alignment explanation
Indices: 254008--254060 Score: 106
Period size: 24 Copynumber: 2.2 Consensus size: 24
253998 AGTACCAAAT
254008 CACCAGTCAACAAATTAGACCTCA
1 CACCAGTCAACAAATTAGACCTCA
254032 CACCAGTCAACAAATTAGACCTCA
1 CACCAGTCAACAAATTAGACCTCA
254056 CACCA
1 CACCA
254061 CTATAGATTA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 29 1.00
ACGTcount: A:0.42, C:0.36, G:0.08, T:0.15
Consensus pattern (24 bp):
CACCAGTCAACAAATTAGACCTCA
Found at i:264594 original size:46 final size:46
Alignment explanation
Indices: 264541--264632 Score: 166
Period size: 46 Copynumber: 2.0 Consensus size: 46
264531 AACTGGCAAC
264541 AATCCAAACAACTACACCATGCACCGACGCTTTCTCACTGTTCAAA
1 AATCCAAACAACTACACCATGCACCGACGCTTTCTCACTGTTCAAA
* *
264587 AATCCAAACAACTACACCATGCACTGGCGCTTTCTCACTGTTCAAA
1 AATCCAAACAACTACACCATGCACCGACGCTTTCTCACTGTTCAAA
264633 GTAAGGTATG
Statistics
Matches: 44, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
46 44 1.00
ACGTcount: A:0.34, C:0.34, G:0.10, T:0.23
Consensus pattern (46 bp):
AATCCAAACAACTACACCATGCACCGACGCTTTCTCACTGTTCAAA
Found at i:265498 original size:3 final size:3
Alignment explanation
Indices: 265490--265544 Score: 51
Period size: 3 Copynumber: 18.3 Consensus size: 3
265480 GCAAAGGAAA
* *
265490 AAG AAG AAGG AAG AA- AAT AAG AAG AAG AAG AAG -AG AAGG AAG AAA
1 AAG AAG AA-G AAG AAG AAG AAG AAG AAG AAG AAG AAG AA-G AAG AAG
*
265535 AAT AAG AAG A
1 AAG AAG AAG A
265545 TATTGCCTCG
Statistics
Matches: 44, Mismatches: 4, Indels: 8
0.79 0.07 0.14
Matches are distributed among these distances:
2 4 0.09
3 34 0.77
4 6 0.14
ACGTcount: A:0.67, C:0.00, G:0.29, T:0.04
Consensus pattern (3 bp):
AAG
Found at i:265532 original size:21 final size:20
Alignment explanation
Indices: 265482--265544 Score: 63
Period size: 21 Copynumber: 3.0 Consensus size: 20
265472 GTATTGAGGC
*
265482 AAAGGAAAAAGAAGAAGGAAG
1 AAAGGAAGAAGAAGAA-GAAG
**
265503 AAAATAAGAAGAAGAAGAAG
1 AAAGGAAGAAGAAGAAGAAG
* *
265523 AGAAGGAAGAAAAATAAGAAG
1 A-AAGGAAGAAGAAGAAGAAG
265544 A
1 A
265545 TATTGCCTCG
Statistics
Matches: 34, Mismatches: 7, Indels: 2
0.79 0.16 0.05
Matches are distributed among these distances:
20 5 0.15
21 29 0.85
ACGTcount: A:0.68, C:0.00, G:0.29, T:0.03
Consensus pattern (20 bp):
AAAGGAAGAAGAAGAAGAAG
Found at i:270027 original size:80 final size:80
Alignment explanation
Indices: 269929--270081 Score: 272
Period size: 80 Copynumber: 1.9 Consensus size: 80
269919 TAAGGAAAAA
*
269929 TGCCATGCCTTTTCAACTACATCAGATCCTAATGAAGAGACATGACTCATTGGCTTTCC-TACAA
1 TGCCATGCCTTTTCAACTACATCAGATCCTAATGAAGAGACATGACTCATTAGC-TTCCTTACAA
269993 GAGTTAAAAACGAAAT
65 GAGTTAAAAACGAAAT
*
270009 TGCCATGTCTTTTCAACTACATCAGATCCTAATGAAGAGACATGACTCATTAGCTTCCTTACAAG
1 TGCCATGCCTTTTCAACTACATCAGATCCTAATGAAGAGACATGACTCATTAGCTTCCTTACAAG
270074 AGTTAAAA
66 AGTTAAAA
270082 TGAAATTAGT
Statistics
Matches: 70, Mismatches: 2, Indels: 2
0.95 0.03 0.03
Matches are distributed among these distances:
79 4 0.06
80 66 0.94
ACGTcount: A:0.35, C:0.22, G:0.14, T:0.29
Consensus pattern (80 bp):
TGCCATGCCTTTTCAACTACATCAGATCCTAATGAAGAGACATGACTCATTAGCTTCCTTACAAG
AGTTAAAAACGAAAT
Found at i:273384 original size:15 final size:15
Alignment explanation
Indices: 273333--273428 Score: 77
Period size: 15 Copynumber: 6.4 Consensus size: 15
273323 CGAGCAATGG
* *
273333 TGTTGCGAGCACTTA
1 TGTTGCGAACACTCA
* *
273348 TGTTGCAAACACTGGA
1 TGTTGCGAACACT-CA
*
273364 -GCTGCGAACACTCA
1 TGTTGCGAACACTCA
*
273378 TGTTGCGAACACACA
1 TGTTGCGAACACTCA
*** *
273393 CAATGCGAACACTAA
1 TGTTGCGAACACTCA
*
273408 TGTTGTGAACACTCA
1 TGTTGCGAACACTCA
273423 TGTTGC
1 TGTTGC
273429 AAGCATGGAT
Statistics
Matches: 60, Mismatches: 19, Indels: 4
0.72 0.23 0.05
Matches are distributed among these distances:
14 1 0.02
15 58 0.97
16 1 0.02
ACGTcount: A:0.29, C:0.24, G:0.22, T:0.25
Consensus pattern (15 bp):
TGTTGCGAACACTCA
Found at i:275138 original size:9 final size:9
Alignment explanation
Indices: 275091--275136 Score: 74
Period size: 9 Copynumber: 5.0 Consensus size: 9
275081 CCGCTGACGC
275091 ACAATTAAA
1 ACAATTAAA
275100 ACAATTAAA
1 ACAATTAAA
275109 ACAATTAAA
1 ACAATTAAA
*
275118 AAAATTAAA
1 ACAATTAAA
275127 ACAACTTAAA
1 ACAA-TTAAA
275137 CACTAACAAA
Statistics
Matches: 34, Mismatches: 2, Indels: 1
0.92 0.05 0.03
Matches are distributed among these distances:
9 29 0.85
10 5 0.15
ACGTcount: A:0.67, C:0.11, G:0.00, T:0.22
Consensus pattern (9 bp):
ACAATTAAA
Found at i:275147 original size:27 final size:27
Alignment explanation
Indices: 275093--275149 Score: 71
Period size: 27 Copynumber: 2.0 Consensus size: 27
275083 GCTGACGCAC
*
275093 AATTAAAACAATTAAAACAATTAAAAA
1 AATTAAAACAATTAAAACAACTAAAAA
275120 AATTAAAACAACTTAAACACTAAC-AAAAA
1 AATTAAAACAA-TTAAA-AC-AACTAAAAA
275149 A
1 A
275150 GAGAAGCCCG
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
27 11 0.42
28 5 0.19
29 8 0.31
30 2 0.08
ACGTcount: A:0.68, C:0.12, G:0.00, T:0.19
Consensus pattern (27 bp):
AATTAAAACAATTAAAACAACTAAAAA
Found at i:279812 original size:13 final size:13
Alignment explanation
Indices: 279794--279825 Score: 64
Period size: 13 Copynumber: 2.5 Consensus size: 13
279784 AAATTCATTC
279794 ATCTCTTAAACAT
1 ATCTCTTAAACAT
279807 ATCTCTTAAACAT
1 ATCTCTTAAACAT
279820 ATCTCT
1 ATCTCT
279826 ATGCCAATTC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 19 1.00
ACGTcount: A:0.34, C:0.25, G:0.00, T:0.41
Consensus pattern (13 bp):
ATCTCTTAAACAT
Found at i:279890 original size:34 final size:34
Alignment explanation
Indices: 279847--279921 Score: 123
Period size: 34 Copynumber: 2.2 Consensus size: 34
279837 ACCGACTAAT
* *
279847 TAACAATCATAATCGTGTAAAGAATCAAGTGAAG
1 TAACAATCATAAGCATGTAAAGAATCAAGTGAAG
*
279881 TAACAATCATAAGCATGTAAAGGATCAAGTGAAG
1 TAACAATCATAAGCATGTAAAGAATCAAGTGAAG
279915 TAACAAT
1 TAACAAT
279922 AATATCTCTA
Statistics
Matches: 38, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
34 38 1.00
ACGTcount: A:0.48, C:0.12, G:0.17, T:0.23
Consensus pattern (34 bp):
TAACAATCATAAGCATGTAAAGAATCAAGTGAAG
Found at i:281200 original size:22 final size:21
Alignment explanation
Indices: 281166--281213 Score: 53
Period size: 21 Copynumber: 2.2 Consensus size: 21
281156 TTTTTTCTCT
281166 TATTTTTTATCTTGCCAAACAC
1 TATTTTTTATCTT-CCAAACAC
*
281188 TATTTTTCT-TCTTCTAAACAC
1 TATTTTT-TATCTTCCAAACAC
*
281209 CATTT
1 TATTT
281214 ATAAAAAACC
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
21 11 0.48
22 11 0.48
23 1 0.04
ACGTcount: A:0.25, C:0.23, G:0.02, T:0.50
Consensus pattern (21 bp):
TATTTTTTATCTTCCAAACAC
Found at i:286530 original size:31 final size:28
Alignment explanation
Indices: 286480--286536 Score: 78
Period size: 31 Copynumber: 1.9 Consensus size: 28
286470 AAATTGAAAA
*
286480 AAAGAAAGGAAAAATGAGAGAAAAGAGC
1 AAAGAAAGGAAAAAAGAGAGAAAAGAGC
286508 AAAGAAAGTGAAAAGAAAGAGAGAAAAGA
1 AAAGAAAG-G-AAA-AAAGAGAGAAAAGA
286537 AAAAGATGAA
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
28 8 0.32
29 1 0.04
30 3 0.12
31 13 0.52
ACGTcount: A:0.67, C:0.02, G:0.28, T:0.04
Consensus pattern (28 bp):
AAAGAAAGGAAAAAAGAGAGAAAAGAGC
Found at i:286535 original size:13 final size:14
Alignment explanation
Indices: 286516--286554 Score: 53
Period size: 13 Copynumber: 2.9 Consensus size: 14
286506 GCAAAGAAAG
286516 TGAAAAGAAAGAGA
1 TGAAAAGAAAGAGA
*
286530 -GAAAAGAAAAAGA
1 TGAAAAGAAAGAGA
*
286543 TGAAAAGGAAGA
1 TGAAAAGAAAGA
286555 AAAAGAGATA
Statistics
Matches: 21, Mismatches: 3, Indels: 2
0.81 0.12 0.08
Matches are distributed among these distances:
13 12 0.57
14 9 0.43
ACGTcount: A:0.67, C:0.00, G:0.28, T:0.05
Consensus pattern (14 bp):
TGAAAAGAAAGAGA
Found at i:289822 original size:32 final size:32
Alignment explanation
Indices: 289786--289848 Score: 108
Period size: 32 Copynumber: 2.0 Consensus size: 32
289776 AGCTGAAATT
* *
289786 AATTAGCTGATTAATGTGTTTCAGGTACATGC
1 AATTAGCTGATTAATATATTTCAGGTACATGC
289818 AATTAGCTGATTAATATATTTCAGGTACATG
1 AATTAGCTGATTAATATATTTCAGGTACATG
289849 TATGGATGGC
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
32 29 1.00
ACGTcount: A:0.32, C:0.11, G:0.19, T:0.38
Consensus pattern (32 bp):
AATTAGCTGATTAATATATTTCAGGTACATGC
Found at i:290773 original size:32 final size:32
Alignment explanation
Indices: 290737--290799 Score: 99
Period size: 32 Copynumber: 2.0 Consensus size: 32
290727 AGCTGAAATT
* *
290737 AATTAGCTGATTAATGTGTTTCAGGTACATGC
1 AATTAGCTGATTAATATATTTCAGGTACATGC
*
290769 AATTAGCTGATTAATATATTTTAGGTACATG
1 AATTAGCTGATTAATATATTTCAGGTACATG
290800 TATGGATGGC
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
32 28 1.00
ACGTcount: A:0.32, C:0.10, G:0.19, T:0.40
Consensus pattern (32 bp):
AATTAGCTGATTAATATATTTCAGGTACATGC
Found at i:291669 original size:44 final size:44
Alignment explanation
Indices: 291611--291699 Score: 178
Period size: 44 Copynumber: 2.0 Consensus size: 44
291601 ATAACTTTCC
291611 ATCTTTGCCTTACTTCGTTTCATTCCTAGCCAAACTACATCCAT
1 ATCTTTGCCTTACTTCGTTTCATTCCTAGCCAAACTACATCCAT
291655 ATCTTTGCCTTACTTCGTTTCATTCCTAGCCAAACTACATCCAT
1 ATCTTTGCCTTACTTCGTTTCATTCCTAGCCAAACTACATCCAT
291699 A
1 A
291700 CTTAGCCGAA
Statistics
Matches: 45, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
44 45 1.00
ACGTcount: A:0.24, C:0.31, G:0.07, T:0.38
Consensus pattern (44 bp):
ATCTTTGCCTTACTTCGTTTCATTCCTAGCCAAACTACATCCAT
Found at i:293333 original size:18 final size:18
Alignment explanation
Indices: 293318--293459 Score: 106
Period size: 18 Copynumber: 7.9 Consensus size: 18
293308 TAATGCTCTT
293318 ATGAGTCAGTATGCTCAA
1 ATGAGTCAGTATGCTCAA
* *
293336 ACGAGCCAGTATGCTCAA
1 ATGAGTCAGTATGCTCAA
* *
293354 ATGAGTGAGTATGCTCTA
1 ATGAGTCAGTATGCTCAA
** * * *
293372 ACAAGCCAATATGCTTAA
1 ATGAGTCAGTATGCTCAA
*
293390 ACGAGTCAGTATGCTCAA
1 ATGAGTCAGTATGCTCAA
* * **
293408 ACGAGCCAGTATGCTCTG
1 ATGAGTCAGTATGCTCAA
* * *
293426 ACGAGTCAGTCTACTCAA
1 ATGAGTCAGTATGCTCAA
*
293444 ACGAG-CTAGTATGCTC
1 ATGAGTC-AGTATGCTC
293460 TTCCTTCTGT
Statistics
Matches: 96, Mismatches: 27, Indels: 2
0.77 0.22 0.02
Matches are distributed among these distances:
17 1 0.01
18 95 0.99
ACGTcount: A:0.32, C:0.23, G:0.22, T:0.24
Consensus pattern (18 bp):
ATGAGTCAGTATGCTCAA
Found at i:293446 original size:54 final size:53
Alignment explanation
Indices: 293304--293459 Score: 168
Period size: 54 Copynumber: 2.9 Consensus size: 53
293294 CTCCTGCGAT
* * *
293304 CCAGTAATGCTCTTATGAGTCAGTATGCTCAAACGAGCCAGTATGCTCAAATGAG
1 CCAGT-ATGCTCTAACGAGTCAGTATGCTCAAACGAG-CAGTATGCTCAAACGAG
** * * * *
293359 TGAGTATGCTCTAACAAGCCAATATGCTTAAACGAGTCAGTATGCTCAAACGAG
1 CCAGTATGCTCTAACGAGTCAGTATGCTCAAACGAG-CAGTATGCTCAAACGAG
* * *
293413 CCAGTATGCTCTGACGAGTCAGTCTACTCAAACGAGCTAGTATGCTC
1 CCAGTATGCTCTAACGAGTCAGTATGCTCAAACGAGC-AGTATGCTC
293460 TTCCTTCTGT
Statistics
Matches: 81, Mismatches: 19, Indels: 3
0.79 0.18 0.03
Matches are distributed among these distances:
53 1 0.01
54 77 0.95
55 3 0.04
ACGTcount: A:0.31, C:0.23, G:0.21, T:0.25
Consensus pattern (53 bp):
CCAGTATGCTCTAACGAGTCAGTATGCTCAAACGAGCAGTATGCTCAAACGAG
Found at i:293460 original size:36 final size:36
Alignment explanation
Indices: 293304--293460 Score: 181
Period size: 36 Copynumber: 4.3 Consensus size: 36
293294 CTCCTGCGAT
* *
293304 CCAGTAATGCTCTTATGAGTCAGTATGCTCAAACGAG
1 CCAGT-ATGCTCTAACGAGTCAGTATGCTCAAACGAG
* * * * *
293341 CCAGTATGCTCAAATGAGTGAGTATGCTCTAACAAG
1 CCAGTATGCTCTAACGAGTCAGTATGCTCAAACGAG
*
293377 CCAATATGCT-TAAACGAGTCAGTATGCTCAAACGAG
1 CCAGTATGCTCT-AACGAGTCAGTATGCTCAAACGAG
* * *
293413 CCAGTATGCTCTGACGAGTCAGTCTACTCAAACGAG
1 CCAGTATGCTCTAACGAGTCAGTATGCTCAAACGAG
*
293449 CTAGTATGCTCT
1 CCAGTATGCTCT
293461 TCCTTCTGTG
Statistics
Matches: 102, Mismatches: 16, Indels: 5
0.83 0.13 0.04
Matches are distributed among these distances:
36 96 0.94
37 6 0.06
ACGTcount: A:0.31, C:0.23, G:0.21, T:0.25
Consensus pattern (36 bp):
CCAGTATGCTCTAACGAGTCAGTATGCTCAAACGAG
Found at i:293953 original size:21 final size:22
Alignment explanation
Indices: 293911--293953 Score: 61
Period size: 21 Copynumber: 2.0 Consensus size: 22
293901 CTTAAACCCT
*
293911 AAAATCATCAAAATCACTTAAC
1 AAAATCATCAAAATCACATAAC
*
293933 AAAATCATC-AAATCTCATAAC
1 AAAATCATCAAAATCACATAAC
293954 CAAGCTCACA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
21 10 0.53
22 9 0.47
ACGTcount: A:0.53, C:0.23, G:0.00, T:0.23
Consensus pattern (22 bp):
AAAATCATCAAAATCACATAAC
Found at i:298373 original size:50 final size:52
Alignment explanation
Indices: 298319--298416 Score: 128
Period size: 50 Copynumber: 1.9 Consensus size: 52
298309 TAAATAATGA
* * *
298319 CATGCACTACGTAACTTATATGTTAGTTAAATA-TGCATCA-TAAATCCTAT
1 CATGCACTACGTAACTCACATGTTAGTTAAAGATTGCATCATTAAATCCTAT
* * *
298369 CATGCATTATGTAACTCCCATGTTAGTTAAAGATTGCATCATTAAATC
1 CATGCACTACGTAACTCACATGTTAGTTAAAGATTGCATCATTAAATC
298417 AAGTCATGCA
Statistics
Matches: 40, Mismatches: 6, Indels: 2
0.83 0.12 0.04
Matches are distributed among these distances:
50 27 0.68
51 7 0.17
52 6 0.15
ACGTcount: A:0.35, C:0.18, G:0.11, T:0.36
Consensus pattern (52 bp):
CATGCACTACGTAACTCACATGTTAGTTAAAGATTGCATCATTAAATCCTAT
Found at i:301046 original size:47 final size:49
Alignment explanation
Indices: 300993--301090 Score: 112
Period size: 50 Copynumber: 2.0 Consensus size: 49
300983 ATGCATTATG
* *
300993 TAATGACATCCATTAACT-C-T-CATGATTAGTTAAGTTTGCATCATAAA
1 TAATGACATCCATTAACTACTTACATG-TTAGTTAAATATGCATCATAAA
* * *
301040 TAATGACTTGCATTAAGTAACTTACATGTTAGTTAAATATGCATCATAAA
1 TAATGACATCCATTAACT-ACTTACATGTTAGTTAAATATGCATCATAAA
301090 T
1 T
301091 CCTATCATGC
Statistics
Matches: 42, Mismatches: 5, Indels: 5
0.81 0.10 0.10
Matches are distributed among these distances:
47 15 0.36
49 1 0.02
50 22 0.52
51 4 0.10
ACGTcount: A:0.38, C:0.14, G:0.11, T:0.37
Consensus pattern (49 bp):
TAATGACATCCATTAACTACTTACATGTTAGTTAAATATGCATCATAAA
Found at i:301083 original size:50 final size:50
Alignment explanation
Indices: 301006--301161 Score: 154
Period size: 50 Copynumber: 3.1 Consensus size: 50
300996 TGACATCCAT
* * *
301006 TAACTCTCATGATTAGTTAAGTTTGCATCATAAATAATGA-CTTGCATTAAG
1 TAACTCACATG-TTAGTTAAATTTGCATCATAAATAAT-ATCATGCATTAAG
* * ** *
301057 TAACTTACATGTTAGTTAAATATGCATCATAAATCCTATCATGCATTATG
1 TAACTCACATGTTAGTTAAATTTGCATCATAAATAATATCATGCATTAAG
* * *
301107 TAACTCCCATGTTAGTTAAAGTTTGCATCATTAAATCAA-GTCATGCATTTAG
1 TAACTCACATGTTAGTTAAA-TTTGCATCA-TAAAT-AATATCATGCATTAAG
301159 TAA
1 TAA
301162 TCCATTAGTT
Statistics
Matches: 85, Mismatches: 16, Indels: 7
0.79 0.15 0.06
Matches are distributed among these distances:
49 1 0.01
50 49 0.58
51 17 0.20
52 18 0.21
ACGTcount: A:0.35, C:0.15, G:0.12, T:0.37
Consensus pattern (50 bp):
TAACTCACATGTTAGTTAAATTTGCATCATAAATAATATCATGCATTAAG
Found at i:303284 original size:216 final size:216
Alignment explanation
Indices: 302378--306593 Score: 4228
Period size: 216 Copynumber: 19.9 Consensus size: 216
302368 TTGGCTCATG
* * *
302378 TAGTTTATAATTTTG-AATACAACTATTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGT
1 TAGTTTGTCATTTTGTAA-ACAACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGT
* ** *
302442 TTCTCTTTTGGTTCTTGGACGAACACCCGAACTTGTAAAACTTTTACGAGTTCTTTTATAACTTC
65 TTCTCTATTGGTTCTTGGACGAACTTCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTC
* * * * *
302507 GGTTTCTTAAAATATTCAAGACGATCCATTCCTTCGAGCAA-TTTTCAGAACAGTCCACGCTCGG
130 GGTTCCTTAAAGTATTCAAGATGATCCATTCCTTCGAGCAATTTTTC-GAACATTCCATGCTCGG
* * *
302571 GGAATCGCATCATTTGGTCAAAA
194 GAAATCGCATCTTTTGGTCCAAA
** * *
302594 TAGTTTGTGGTTTTGTAAACAACTTTTTGTCTTTGAATTGAAAACTTATTTACGTGAGAATTGTT
1 TAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTT
* * * * * *
302659 TCTGTGTTGGTTCTTGGATGAACTTCCGAACTTGTCAAACTTTAATGAGAT-TTTTATAACTTCG
66 TCTCTATTGGTTCTTGGACGAACTTCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCG
* * * * * **
302723 GTTCCTTAAAGTATTCAAGATGATTCATTCCTTCCAACAATTTTT-GAACATTCAATGTTTAGGA
131 GTTCCTTAAAGTATTCAAGATGATCCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCGGGA
* *
302787 AATCGCATTTTTTTGTCCAAA
196 AATCGCATCTTTTGGTCCAAA
* * *
302808 TAGTTTGTCATTTTGTAAATAACTTTTGGTCTTTGAATTAAAAACTTATTTACATGAGAATTGAT
1 TAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTT
* * * * * * * ***
302873 TCTCTCTCGATTTTTGGACAAACTTCCAAACTTGTCAAACTTGTACGAGTTCTGGAATAACTTCG
66 TCTCTATTGGTTCTTGGACGAACTTCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCG
* * *
302938 GTTCCTTAAAGTATTCAAGATGATCCATTCCTTCAAGCAATTTTCCAAACATTCCATGCTCGAGG
131 GTTCCTTAAAGTATTCAAGATGATCCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCG-GG
* * *
303003 -AATCGCATCATATGGTCTAAA
195 AAATCGCATCTTTTGGTCCAAA
*** * *
303024 TAGTTTAAGATATTTGTAAACAAGTTTTGGTCTTTCAATTAAAAACTTATTTACGTGAGAATTGT
1 TAGTTTGTCAT-TTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGT
* * * *
303089 TTGTCTATTGGTTCTTGGATGAACTTCCGAACTTGTCACACTTTTACAAGTTCTTTTATAACTTC
65 TTCTCTATTGGTTCTTGGACGAACTTCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTC
* * * * * *
303154 GATACCTTAAAGTA-TCATGACGATCCATTCCTTCGCGCAATTTTTCGAACATTCTATGCTCGGG
130 GGTTCCTTAAAGTATTCAAGATGATCCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCGGG
*
303218 AAATCGCATCTTTTCGTCCAAA
195 AAATCGCATCTTTTGGTCCAAA
* * * * *
303240 TAGTTTGTCATTTTGTAAAAAAACTTTTGGTCTTTGATTTAAAAACTTATTTATGTGAGATTTAT
1 TAGTTTGTCATTTTGT-AAACAACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGT
* * * * * *
303305 TTGTCTATTGGTTC-TCGACCGAGCTTCTGAACTTGTCAAACTTTTACGATTTCTTTTATAACAT
65 TTCTCTATTGGTTCTTGGA-CGAACTTCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTT
* * *
303369 CGGTTTCTTAAAGTATTCAAGAAGATCCATTCCTTC-ATGCAATTTTTAGAACATT--A-G--C-
129 CGGTTCCTTAAAGTATTCAAGATGATCCATTCCTTCGA-GCAATTTTTCGAACATTCCATGCTCG
*
303427 ----AT---A--ATTTGGTCCAAA
193 GGAAATCGCATCTTTTGGTCCAAA
*
303442 TAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTTAAAACTTA-TTACGTGAGAATTGTT
1 TAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTT
* * * ** *
303506 TCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCCAACTTTTACGAGTTCTTAAATAACTTTG
66 TCTCTATTGGTTCTTGGACGAACTTCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCG
* * ** *
303571 GTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGTAATTTCCCGAACATTCCATGCTCGAGA
131 GTTCCTTAAAGTATTCAAGATGATCCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCGGGA
303636 AATCGCATCATTTT-GTCCAAA
196 AATCGCATC-TTTTGGTCCAAA
* * * * * *
303657 TAGTTAGTCGTTTTGTAAAAAATCTTTTGGTCTTCGATTTAAAAAGTTATTTACGTGAGAATTGT
1 TAGTTTGTCATTTTGTAAACAA-CTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGT
** * * *
303722 TTCTCCCTTGGTTCTTGG-CTGAATTTCCAAACTTGTCAAACTTTTACGAGTTCTTCTATAACAT
65 TTCTCTATTGGTTCTTGGAC-GAACTTCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAAC-T
* *
303786 T-GG-TCTCTTAAAGCATTCAAGATGATCCATT-TTATCGAGCAA-TTTTCAGAACATT-C--G-
128 TCGGTTC-CTTAAAGTATTCAAGATGATCCATTCCT-TCGAGCAATTTTTC-GAACATTCCATGC
* *
303843 -C-----AT---A--ATTTGGCCCAAAA
190 TCGGGAAATCGCATCTTTTGGTCC-AAA
* ** * * *
303860 TAGTTTGTCATTTTGTAAACAAATTTTGCCCTTTGAATT-AAAACTTATTCACCTGAGAATTGTC
1 TAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTT
* * * *
303924 TCTCTGTTGGTTCTTGGACGAACTTCCGAACTTGTCGAACATTTACGAGTTCTTTGATAACTTCG
66 TCTCTATTGGTTCTTGGACGAACTTCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCG
* * * * *
303989 GTTCCTTAAATTATTCAAGATGATCCATTCCTTC-AACAAATTTTCCAAACATTCCGTGCTCGGG
131 GTTCCTTAAAGTATTCAAGATGATCCATTCCTTCGAGC-AATTTTTCGAACATTCCATGCTCGGG
* * *
304053 AAATTGCATCATTCGGTCCAAA
195 AAATCGCATCTTTTGGTCCAAA
* * * * * * **
304075 TAGTTTGACATATAGTAAACAGCTTTTGGTCTTTGATTTAAAAACTAATTTACGTGAGAATCATT
1 TAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTT
* * * * * *
304140 TGTTTATTGGTTCTTGGCCGAACTTTCGAACTTGTTAAACTTTTAC-AGGTTATTTTATAACTTC
66 TCTCTATTGGTTCTTGGACGAACTTCCGAACTTGTCAAACTTTTACGA-GTTCTTTTATAACTTC
* * * * * * *
304204 AGTTCCTTAAAGTTTTCAAAATGATCCATTCCGTCAAGCAA-TTTTCTAA-A---CA--ATC---
130 GGTTCCTTAAAGTATTCAAGATGATCCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCGGG
* * *
304259 ACAT--CA-GTTTT--T-CAAG
195 AAATCGCATCTTTTGGTCCAAA
* * * * * *
304275 TAGATTATAATTTTGTATACAACTGTTGGTCTTTGAATTGAAAACTTATTTACGTGAGAATTGTT
1 TAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTT
* ** * *
304340 TCTCTTTTGGTTCTTGGACGAACACCCGAACTTGTAAAACTTTTACGAGTTCTTTTCTAACTTCG
66 TCTCTATTGGTTCTTGGACGAACTTCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCG
* * *
304405 GTTTCTTAAAGTATTCATGACGATCCATTCCTTCGAGCAA-TTTTCTGAACATTCCATGCTCGAG
131 GTTCCTTAAAGTATTCAAGATGATCCATTCCTTCGAGCAATTTTTC-GAACATTCCATGCTCG-G
* * **
304469 G-AATCACATCATTTGGTAAAAA
194 GAAATCGCATCTTTTGGTCCAAA
** ** * *
304491 TAGTTTGTGGTTTTGTAAACAACTTTTTATCTTTGAATTGAAAACTTATTTACGTAAGAATTGTT
1 TAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTT
* * * *
304556 TCTCTGTTGGTTCTTGGATGAACTTCTGAACTTGTCAAACTTTTATGAGATT-TTTTATAACTTC
66 TCTCTATTGGTTCTTGGACGAACTTCCGAACTTGTCAAACTTTTACGAG-TTCTTTTATAACTTC
* * * *
304620 GGTTCCTTAAAGTATTCAAGATGATCCATTCCTTCTAGCAATTTTTCGAACATTCAATGTTCAGG
130 GGTTCCTTAAAGTATTCAAGATGATCCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCGGG
**
304685 AAATCGCATCTTTTCATCCAAA
195 AAATCGCATCTTTTGGTCCAAA
* * * *
304707 TAGTTTGTCATTTTATAAATAACTTTTGGTCTTTGAATTAAAAACTTATTTACATGAGAATTGAT
1 TAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTT
* * * * **
304772 TCTCTCTTGGTT-TCTGGACAAACTTCCAAACTTGTCAAACTTGTACGAGTTCTTGAATAACTTC
66 TCTCTATTGGTTCT-TGGACGAACTTCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTC
* * *
304836 GGTTCCTTAAAGTATTCAAGATGATCCATTCCTTCCAGCAATTTTCCAAACATTCCATGCTCGGG
130 GGTTCCTTAAAGTATTCAAGATGATCCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCGGG
* * * *
304901 GAATCGCATCATATGGTCTAAA
195 AAATCGCATCTTTTGGTCCAAA
* * *
304923 TAGTTTATGATATTTGTAAACAACTTTTGGTCTTTCAATTAAAAACTTATTTACGTGAGAATTGT
1 TAGTTTGTCAT-TTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGT
* ** * *
304988 TTGTCTATTGGTTCTTGGATAAACTTCCGAACTTGTCAAACTTTTATGAGATT-TTTTATAATTT
65 TTCTCTATTGGTTCTTGGACGAACTTCCGAACTTGTCAAACTTTTACGAG-TTCTTTTATAACTT
* * * *
305052 CGGTTCCTTAAAGTATTCAAGATGATCCATTCCTTTC-AGCAA-TTTTCGAGCATTCAATGTTCA
129 CGGTTCCTTAAAGTATTCAAGATGATCCATTCC-TTCGAGCAATTTTTCGAACATTCCATGCTCG
*
305115 GGAAATCGCATCTTTTCGTCCAAA
193 GGAAATCGCATCTTTTGGTCCAAA
* * * *
305139 TAGTTTGTCATTTTGTAAATAATTTTTGGTCTTTGAATTAAAAACTTATTTACATGAGAATTGAT
1 TAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTT
* * * * * * ***
305204 TCTCTCTCGGTTTTTGGACAAACTTCCAAACTTGTCAAACTTGTACGAGTTCTGGAATAACTTCG
66 TCTCTATTGGTTCTTGGACGAACTTCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCG
* * * * *
305269 GTTCCTTAAAGTATTCAAGGTGATCCATTCCTTCAAGCAATTTTCCTAACATTCCATGCTCGGGG
131 GTTCCTTAAAGTATTCAAGATGATCCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCGGGA
* * *
305334 AATCGCATCATATGGTCTAAA
196 AATCGCATCTTTTGGTCCAAA
* * *
305355 TAGTTTATGATATTTGTAAACAACTTTTGGTCTTTCAATTAAAAACTTATTTACGTGAGAATTGT
1 TAGTTTGTCAT-TTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGT
* * * * *
305420 TTGTGTATTAGTTCTTGGATGAACTTCCGAACTTGTCAAACTTTTACAAGTTCTTTTATAACTTC
65 TTCTCTATTGGTTCTTGGACGAACTTCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTC
* * * * ** * *
305485 GATACCTTAAAGTA-TCATGACGATCCATTCCTTCGAGCAATTTTTCGAACATTTTATACTCGAG
130 GGTTCCTTAAAGTATTCAAGATGATCCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCGGG
*
305549 AAATCGCATCTTTTCGTCCAAA
195 AAATCGCATCTTTTGGTCCAAA
* * * * * *
305571 TAGTTTGTCATTTTGAAAAAAAAACTATTGGTCTTTGATTTATAAAAACTTATTTATGTGAGATT
1 TAGTTTGTCATTTTG--TAAACAACTTTTGGTCTTTGA-AT-TAAAAACTTATTTACGTGAGAAT
* * * * * * * *
305636 TATTTGTCTATTGGTTCTCGGCCGAGCTTCCGAACCTGTCAAACTTTTACAATTTCTTTTATAAC
62 TGTTTCTCTATTGGTTCTTGGACGAACTTCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAAC
* * *
305701 ATCGGTTTCTTAAAGTATTCAAGACGATCCATTCCTTC-ATGCAA-TTTTCAGAACATT--A-G-
127 TTCGGTTCCTTAAAGTATTCAAGATGATCCATTCCTTCGA-GCAATTTTTC-GAACATTCCATGC
*
305760 -C-----AT--AATC---TGGTCCAAA
190 TCGGGAAATCGCATCTTTTGGTCCAAA
*
305776 TAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATT-AAAACTTA-TTACGTGAGAATTATT
1 TAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTT
* * ** *
305839 TCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAACTTTTACGAGTTCTTAAATTACGTT-
66 TCTCTATTGGTTCTTGGACGAACTTCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAAC-TTC
* * ** * *
305903 GGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGTAATTTCCCGAACATTCCACGCTCGAG
130 GGTTCCTTAAAGTATTCAAGATGATCCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCGGG
*
305968 AAATCACATCATTTT-GTCCAAA
195 AAATCGCATC-TTTTGGTCCAAA
* * * * * * *
305990 TAGTTAGTCGTTTTGTAAA-AACTTTTGGTCTTCGATTTAAAAAGTCATTTACGTAAGAATTGTT
1 TAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTT
*** * * * * *
306054 TCTAGCTTGGTTCTTGG-CTCAATTTTCGAACTTGTCAAACTTTTACGAGTTCTTCTATAACATC
66 TCTCTATTGGTTCTTGGAC-GAACTTCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTC
* * ** * *
306118 GGTCCCTTAAAGCATTCAAGCCGATCCATT-TTATCGAGCAATTTTTAGAACATT-C--G--C--
130 GGTTCCTTAAAGTATTCAAGATGATCCATTCCT-TCGAGCAATTTTTCGAACATTCCATGCTCGG
*
306175 ---AT---A--ATTTGGTCCAAAA
194 GAAATCGCATCTTTTGGTCC-AAA
* * *
306191 TAGTTTGTTATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTCACCTGAGAATTGTT
1 TAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTT
* * * * * *
306256 TCTCTGTTGGTTCTTGGACGAACTTCCGAACTTTTCAAACATTTACAAGTTATTTGATAACTTCG
66 TCTCTATTGGTTCTTGGACGAACTTCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCG
* * ** * * *
306321 GTTCCTTAAAGTATTCAAGATGATCCATTCCTTCCAGCTA-TTTTCGAACATTTAATGTTCAGGT
131 GTTCCTTAAAGTATTCAAGATGATCCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCGGGA
*
306385 AATCGCATCTTTTCGTCCAAA
196 AATCGCATCTTTTGGTCCAAA
* * * * * *
306406 TAGTTTGTCATTTTGTAAATAACTTTTGGTCTTTGAATTAAAAAGTTATCTACATGAGATTTGAT
1 TAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTT
* * * * * * * ***
306471 TCTCTCTCGGTTTTTGGACAAACTTCCAAACTTGTCAAACTTGTACGAATTCTGGAATAACTTCG
66 TCTCTATTGGTTCTTGGACGAACTTCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCG
* * *
306536 GTTCCTTAAAGTATTCAAGATGATCCATTCCTTCAAGCAATTTTCCAAACATTCCATG
131 GTTCCTTAAAGTATTCAAGATGATCCATTCCTTCGAGCAATTTTTCGAACATTCCATG
306594 NNNNNNNNNN
Statistics
Matches: 3278, Mismatches: 577, Indels: 290
0.79 0.14 0.07
Matches are distributed among these distances:
199 110 0.03
200 272 0.08
201 179 0.05
202 174 0.05
203 45 0.01
204 7 0.00
205 28 0.01
206 5 0.00
207 6 0.00
208 3 0.00
209 4 0.00
210 7 0.00
211 8 0.00
212 5 0.00
213 21 0.01
214 170 0.05
215 581 0.18
216 988 0.30
217 529 0.16
218 10 0.00
219 96 0.03
220 30 0.01
ACGTcount: A:0.28, C:0.18, G:0.15, T:0.40
Consensus pattern (216 bp):
TAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTT
TCTCTATTGGTTCTTGGACGAACTTCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCG
GTTCCTTAAAGTATTCAAGATGATCCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCGGGA
AATCGCATCTTTTGGTCCAAA
Found at i:305108 original size:432 final size:430
Alignment explanation
Indices: 302024--306593 Score: 4444
Period size: 417 Copynumber: 10.8 Consensus size: 430
302014 TGTTCGATTA
* * * *
302024 TTTCTCTGTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACATTTACGAGTTCTTTGACAACTT
1 TTTCTCTATTGGTTCTTGGACGAACTTCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTT
* ** * **
302089 CGGTTCCTT-AAGTTATTCAAGATGATCCATTCCTTCAATAAATTTTCCAAACATTCCGTGCTCG
66 CGGTTCCTTAAAG-TATTCAAGATGATCCATTCCTTCGAGCAATTTT-CGAACATTCAATGCTC-
* * * * * *
302153 GGAAATCGCATC-ATTCGGTCCAAATAGTTTGACATATAGTAAACAGCTTTTGGTCTTTGATTTA
128 GGAAATCGCATCTTTTC-GTCCAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTA
* * * * * * ** *
302217 AAAACTAATTTACGTGAGAA-TCATTTGTTTATTGGTTCTTGGCCGAACTTTTGAACTTGTTAAA
192 AAAACTTATTTACGTGAGAATTGA-TTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAA
* * * * * * *
302281 CTTTTACAAGTTATTTTATAACTTCAGTTCCTTAAAGTTTTCAAGATGATCCATTCCGTCAAGCA
256 CTTTTACGAGTTCTTGTATAACTTCGGTTCCTTAAAGTATTCAAGATGATCCATTCCTTCCAGCA
* * ** * *
302346 ATTTTCTAAACA----A---TC-----A---CATCAGTTGG-CTCATGTAGTTTATAATTTTG-A
321 ATTTTCCAAACATTCCATGCTCGGGAAATCGCATCATTTGGTC-CAAATAGTTTGTGATTTTGTA
*
302394 ATACAACTATTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTG
385 A-ACAACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTG
* ** *
302441 TTTCTCTTTTGGTTCTTGGACGAACACCCGAACTTGTAAAACTTTTACGAGTTCTTTTATAACTT
1 TTTCTCTATTGGTTCTTGGACGAACTTCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTT
* * * * * *
302506 CGGTTTCTTAAAATATTCAAGACGATCCATTCCTTCGAGCAATTTTCAGAACAGTCCACGCTCGG
66 CGGTTCCTTAAAGTATTCAAGATGATCCATTCCTTCGAGCAATTTTC-GAACATTCAATGCTC-G
* * * * ** * *
302571 GGAATCGCATCATTTGGTCAAAATAGTTTGTGGTTTTGTAAACAACTTTTTGTCTTTGAATTGAA
129 GAAATCGCATCTTTTCGTCCAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAA
* * * *
302636 AACTTATTTACGTGAGAATTGTTTCTGTGTTGGTTCTTGGATGAACTTCCGAACTTGTCAAACTT
194 AACTTATTTACGTGAGAATTGATTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACTT
* * * *
302701 TAATGAGATT-TT-TATAACTTCGGTTCCTTAAAGTATTCAAGATGATTCATTCCTTCCAACAAT
259 TTACGAG-TTCTTGTATAACTTCGGTTCCTTAAAGTATTCAAGATGATCCATTCCTTCCAGCAAT
** * * ** ** * * *
302764 TTT-TGAACATTCAATGTTTAGGAAATCGCATTTTTTTGTCCAAATAGTTTGTCATTTTGTAAAT
323 TTTCCAAACATTCCATGCTCGGGAAATCGCATCATTTGGTCCAAATAGTTTGTGATTTTGTAAAC
*
302828 AACTTTTGGTCTTTGAATTAAAAACTTATTTACATGAGAATTG
388 AACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTG
* * * * * * * * ***
302871 ATTCTCTCTCGATTTTTGGACAAACTTCCAAACTTGTCAAACTTGTACGAGTTCTGGAATAACTT
1 TTTCTCTATTGGTTCTTGGACGAACTTCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTT
* * *
302936 CGGTTCCTTAAAGTATTCAAGATGATCCATTCCTTCAAGCAATTTTCCAAACATTCCATGCTCGA
66 CGGTTCCTTAAAGTATTCAAGATGATCCATTCCTTCGAGCAATTTT-CGAACATTCAATGCTCG-
* * * * * *** * *
303001 GGAATCGCATCATATGGTCTAAATAGTTTAAGATATTTGTAAACAAGTTTTGGTCTTTCAATTAA
129 GAAATCGCATCTTTTCGTCCAAATAGTTTGTCAT-TTTGTAAACAACTTTTGGTCTTTGAATTAA
* * * * *
303066 AAACTTATTTACGTGAGAATTGTTTGTCTATTGGTTCTTGGATGAACTTCCGAACTTGTCACACT
193 AAACTTATTTACGTGAGAATTGATTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACT
* * * * * *
303131 TTTACAAGTTCTTTTATAACTTCGATACCTTAAAGTA-TCATGACGATCCATTCCTTCGC-GCAA
258 TTTACGAGTTCTTGTATAACTTCGGTTCCTTAAAGTATTCAAGATGATCCATTCCTTC-CAGCAA
* * * * * *
303194 TTTTTCGAACATTCTATGCTCGGGAAATCGCATCTTTTCGTCCAAATAGTTTGTCATTTTGTAAA
322 TTTTCCAAACATTCCATGCTCGGGAAATCGCATCATTTGGTCCAAATAGTTTGTGATTTTGT-AA
* * * * *
303259 AAAACTTTTGGTCTTTGATTTAAAAACTTATTTATGTGAGATTTA
386 ACAACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTG
* * * * * *
303304 TTTGTCTATTGGTTC-TCGACCGAGCTTCTGAACTTGTCAAACTTTTACGATTTCTTTTATAACA
1 TTTCTCTATTGGTTCTTGGA-CGAACTTCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACT
* * *
303368 TCGGTTTCTTAAAGTATTCAAGAAGATCCATTCCTTC-ATGCAATTTTTAGAACATT--A-G--C
65 TCGGTTCCTTAAAGTATTCAAGATGATCCATTCCTTCGA-GCAA-TTTTCGAACATTCAATGCTC
* * *
303427 ----AT---A--ATTTGGTCCAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTTA
128 GGAAATCGCATCTTTTCGTCCAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAA
* * *
303483 AAACTTA-TTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCCAACT
193 AAACTTATTTACGTGAGAATTGATTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACT
** * * * *
303547 TTTACGAGTTCTTAAATAACTTTGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGTAAT
258 TTTACGAGTTCTTGTATAACTTCGGTTCCTTAAAGTATTCAAGATGATCCATTCCTTCCAGCAAT
* * * * *
303612 TTCCCGAACATTCCATGCTCGAGAAATCGCATCATTTTGTCCAAATAGTTAGTCG-TTTTGTAAA
323 TTTCCAAACATTCCATGCTCGGGAAATCGCATCATTTGGTCCAAATAGTTTGT-GATTTTGTAAA
* * * *
303676 AAATCTTTTGGTCTTCGATTTAAAAAGTTATTTACGTGAGAATTG
387 CAA-CTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTG
** * * *
303721 TTTCTCCCTTGGTTCTTGG-CTGAATTTCCAAACTTGTCAAACTTTTACGAGTTCTTCTATAACA
1 TTTCTCTATTGGTTCTTGGAC-GAACTTCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAAC-
* *
303785 TT-GG-TCTCTTAAAGCATTCAAGATGATCCATT-TTATCGAGCAATTTTCAGAACATTC---G-
64 TTCGGTTC-CTTAAAGTATTCAAGATGATCCATTCCT-TCGAGCAATTTTC-GAACATTCAATGC
* * * * **
303843 -C----AT---A--ATTTGGCCCAAAATAGTTTGTCATTTTGTAAACAAATTTTGCCCTTTGAAT
126 TCGGAAATCGCATCTTTTCGTCC-AAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAAT
* * * *
303898 T-AAAACTTATTCACCTGAGAATTG-TCTCTCTGTTGGTTCTTGGACGAACTTCCGAACTTGTCG
190 TAAAAACTTATTTACGTGAGAATTGAT-TCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCA
* *
303961 AACATTTACGAGTTCTT-TGATAACTTCGGTTCCTTAAATTATTCAAGATGATCCATTCCTT-CA
254 AACTTTTACGAGTTCTTGT-ATAACTTCGGTTCCTTAAAGTATTCAAGATGATCCATTCCTTCCA
* * * * ** * *
304024 ACAAATTTTCCAAACATTCCGTGCTCGGGAAATTGCATCATTCGGTCCAAATAGTTTGACATATA
318 GC-AATTTTCCAAACATTCCATGCTCGGGAAATCGCATCATTTGGTCCAAATAGTTTGTGATTTT
* * * **
304089 GTAAACAGCTTTTGGTCTTTGATTTAAAAACTAATTTACGTGAGAATCA
382 GTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTG
* * * * * *
304138 TTTGTTTATTGGTTCTTGGCCGAACTTTCGAACTTGTTAAACTTTTAC-AGGTTATTTTATAACT
1 TTTCTCTATTGGTTCTTGGACGAACTTCCGAACTTGTCAAACTTTTACGA-GTTCTTTTATAACT
* * * * * *
304202 TCAGTTCCTTAAAGTTTTCAAAATGATCCATTCCGTCAAGCAATTTTCTAA-A--CAA---TC--
65 TCGGTTCCTTAAAGTATTCAAGATGATCCATTCCTTCGAGCAATTTTCGAACATTCAATGCTCGG
* * * * * * * * *
304259 ACAT--CA-GTTTT--T-CAAGTAGATTATAATTTTGTATACAACTGTTGGTCTTTGAATTGAAA
130 AAATCGCATCTTTTCGTCCAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAA
* * ** *
304318 ACTTATTTACGTGAGAATTGTTTCTCTTTTGGTTCTTGGACGAACACCCGAACTTGTAAAACTTT
195 ACTTATTTACGTGAGAATTGATTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACTTT
* * * * * *
304383 TACGAGTTCTTTTCTAACTTCGGTTTCTTAAAGTATTCATGACGATCCATTCCTTCGAGCAATTT
260 TACGAGTTCTTGTATAACTTCGGTTCCTTAAAGTATTCAAGATGATCCATTCCTTCCAGCAATTT
** * ** *
304448 TCTGAACATTCCATGCTCGAGG-AATCACATCATTTGGTAAAAATAGTTTGTGGTTTTGTAAACA
325 TCCAAACATTCCATGCTCG-GGAAATCGCATCATTTGGTCCAAATAGTTTGTGATTTTGTAAACA
** * *
304512 ACTTTTTATCTTTGAATTGAAAACTTATTTACGTAAGAATTG
389 ACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTG
* * * *
304554 TTTCTCTGTTGGTTCTTGGATGAACTTCTGAACTTGTCAAACTTTTATGAGATT-TTTTATAACT
1 TTTCTCTATTGGTTCTTGGACGAACTTCCGAACTTGTCAAACTTTTACGAG-TTCTTTTATAACT
* *
304618 TCGGTTCCTTAAAGTATTCAAGATGATCCATTCCTTCTAGCAATTTTTCGAACATTCAATGTTCA
65 TCGGTTCCTTAAAGTATTCAAGATGATCCATTCCTTCGAGCAA-TTTTCGAACATTCAATGCTC-
* * *
304683 GGAAATCGCATCTTTTCATCCAAATAGTTTGTCATTTTATAAATAACTTTTGGTCTTTGAATTAA
128 GGAAATCGCATCTTTTCGTCCAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAA
* * *
304748 AAACTTATTTACATGAGAATTGATTCTCTCTTGGTT-TCTGGACAAACTTCCAAACTTGTCAAAC
193 AAACTTATTTACGTGAGAATTGATTCTCTCTTGGTTCT-TGGACGAACTTCCGAACTTGTCAAAC
* *
304812 TTGTACGAGTTCTTGAATAACTTCGGTTCCTTAAAGTATTCAAGATGATCCATTCCTTCCAGCAA
257 TTTTACGAGTTCTTGTATAACTTCGGTTCCTTAAAGTATTCAAGATGATCCATTCCTTCCAGCAA
* * * *
304877 TTTTCCAAACATTCCATGCTCGGGGAATCGCATCATATGGTCTAAATAGTTTATGATATTTGTAA
322 TTTTCCAAACATTCCATGCTCGGGAAATCGCATCATTTGGTCCAAATAGTTTGTGAT-TTTGTAA
*
304942 ACAACTTTTGGTCTTTCAATTAAAAACTTATTTACGTGAGAATTG
386 ACAACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTG
* ** * *
304987 TTTGTCTATTGGTTCTTGGATAAACTTCCGAACTTGTCAAACTTTTATGAGATT-TTTTATAATT
1 TTTCTCTATTGGTTCTTGGACGAACTTCCGAACTTGTCAAACTTTTACGAG-TTCTTTTATAACT
* *
305051 TCGGTTCCTTAAAGTATTCAAGATGATCCATTCCTTTC-AGCAATTTTCGAGCATTCAATGTTCA
65 TCGGTTCCTTAAAGTATTCAAGATGATCCATTCC-TTCGAGCAATTTTCGAACATTCAATGCTC-
* *
305115 GGAAATCGCATCTTTTCGTCCAAATAGTTTGTCATTTTGTAAATAATTTTTGGTCTTTGAATTAA
128 GGAAATCGCATCTTTTCGTCCAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAA
* * * * *
305180 AAACTTATTTACATGAGAATTGATTCTCTCTCGGTTTTTGGACAAACTTCCAAACTTGTCAAACT
193 AAACTTATTTACGTGAGAATTGATTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACT
* * * * *
305245 TGTACGAGTTCTGGAATAACTTCGGTTCCTTAAAGTATTCAAGGTGATCCATTCCTTCAAGCAAT
258 TTTACGAGTTCTTGTATAACTTCGGTTCCTTAAAGTATTCAAGATGATCCATTCCTTCCAGCAAT
* * * * *
305310 TTTCCTAACATTCCATGCTCGGGGAATCGCATCATATGGTCTAAATAGTTTATGATATTTGTAAA
323 TTTCCAAACATTCCATGCTCGGGAAATCGCATCATTTGGTCCAAATAGTTTGTGAT-TTTGTAAA
*
305375 CAACTTTTGGTCTTTCAATTAAAAACTTATTTACGTGAGAATTG
387 CAACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTG
* * * * *
305419 TTTGTGTATTAGTTCTTGGATGAACTTCCGAACTTGTCAAACTTTTACAAGTTCTTTTATAACTT
1 TTTCTCTATTGGTTCTTGGACGAACTTCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTT
* * * * ** *
305484 CGATACCTTAAAGTA-TCATGACGATCCATTCCTTCGAGCAATTTTTCGAACATTTTATACTCGA
66 CGGTTCCTTAAAGTATTCAAGATGATCCATTCCTTCGAGCAA-TTTTCGAACATTCAATGCTCG-
* * * *
305548 GAAATCGCATCTTTTCGTCCAAATAGTTTGTCATTTTGAAAAAAAAACTATTGGTCTTTGATTTA
129 GAAATCGCATCTTTTCGTCCAAATAGTTTGTCATTTTG--TAAACAACTTTTGGTCTTTGA-AT-
* * * * * * * *
305613 TAAAAACTTATTTATGTGAG-ATTTATTTGTCTATTGGTTCTCGGCCGAGCTTCCGAACCTGTCA
190 TAAAAACTTATTTACGTGAGAATTGA-TTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCA
* * * * * *
305677 AACTTTTACAATTTCTTTTATAACATCGGTTTCTTAAAGTATTCAAGACGATCCATTCCTT-CAT
254 AACTTTTACGAGTTCTTGTATAACTTCGGTTCCTTAAAGTATTCAAGATGATCCATTCCTTCCA-
* *
305741 GCAATTTT-CAGAACATT--A-G--C-----AT---A--ATCTGGTCCAAATAGTTTGTCATTTT
318 GCAATTTTCCA-AACATTCCATGCTCGGGAAATCGCATCATTTGGTCCAAATAGTTTGTGATTTT
*
305790 GTAAACAACTTTTGGTCTTTGAATT-AAAACTTA-TTACGTGAGAATTA
382 GTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTG
* * ** *
305837 TTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAACTTTTACGAGTTCTTAAATTACGT
1 TTTCTCTATTGGTTCTTGGACGAACTTCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAAC-T
* * * * *
305902 T-GGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGTAATTTCCCGAACATTCCACGCTCG
65 TCGGTTCCTTAAAGTATTCAAGATGATCCATTCCTTCGAGCAATTT-TCGAACATTCAATGCTCG
* * * * *
305966 AGAAATCACATCATTTT-GTCCAAATAGTTAGTCGTTTTGTAAA-AACTTTTGGTCTTCGATTTA
129 -GAAATCGCATC-TTTTCGTCCAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTA
* * * * ** * * *
306029 AAAAGTCATTTACGTAAGAATTGTTTCTAGCTTGGTTCTTGG-CTCAATTTTCGAACTTGTCAAA
192 AAAACTTATTTACGTGAGAATTGATTCTCTCTTGGTTCTTGGAC-GAACTTCCGAACTTGTCAAA
* * * * ** * *
306093 CTTTTACGAGTTCTTCTATAACATCGGTCCCTTAAAGCATTCAAGCCGATCCATT-TTATCGAGC
256 CTTTTACGAGTTCTTGTATAACTTCGGTTCCTTAAAGTATTCAAGATGATCCATTCCT-TCCAGC
* *
306157 AATTTT-TAGAACATT-C--G--C-----AT---A--ATTTGGTCCAAAATAGTTTGTTATTTTG
320 AATTTTCCA-AACATTCCATGCTCGGGAAATCGCATCATTTGGTCC-AAATAGTTTGTGATTTTG
* *
306206 TAAACAACTTTTGGTCTTTGAATTAAAAACTTATTCACCTGAGAATTG
383 TAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTG
* * * * * *
306254 TTTCTCTGTTGGTTCTTGGACGAACTTCCGAACTTTTCAAACATTTACAAGTTATTTGATAACTT
1 TTTCTCTATTGGTTCTTGGACGAACTTCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTT
* * * *
306319 CGGTTCCTTAAAGTATTCAAGATGATCCATTCCTTCCAGCTATTTTCGAACATTTAATGTTCAGG
66 CGGTTCCTTAAAGTATTCAAGATGATCCATTCCTTCGAGCAATTTTCGAACATTCAATGCTC-GG
* *
306384 TAATCGCATCTTTTCGTCCAAATAGTTTGTCATTTTGTAAATAACTTTTGGTCTTTGAATTAAAA
130 AAATCGCATCTTTTCGTCCAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAA
* * * * * * * * *
306449 AGTTATCTACATGAGATTTGATTCTCTCTCGGTTTTTGGACAAACTTCCAAACTTGTCAAACTTG
195 ACTTATTTACGTGAGAATTGATTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACTTT
* * * *
306514 TACGAATTCTGGAATAACTTCGGTTCCTTAAAGTATTCAAGATGATCCATTCCTTCAAGCAATTT
260 TACGAGTTCTTGTATAACTTCGGTTCCTTAAAGTATTCAAGATGATCCATTCCTTCCAGCAATTT
306579 TCCAAACATTCCATG
325 TCCAAACATTCCATG
306594 NNNNNNNNNN
Statistics
Matches: 3508, Mismatches: 521, Indels: 245
0.82 0.12 0.06
Matches are distributed among these distances:
413 3 0.00
414 122 0.03
415 91 0.03
416 499 0.14
417 844 0.24
418 314 0.09
419 82 0.02
420 36 0.01
421 19 0.01
422 1 0.00
423 5 0.00
426 5 0.00
427 1 0.00
428 3 0.00
429 5 0.00
430 203 0.06
431 151 0.04
432 705 0.20
433 276 0.08
434 25 0.01
435 7 0.00
436 111 0.03
ACGTcount: A:0.28, C:0.18, G:0.15, T:0.39
Consensus pattern (430 bp):
TTTCTCTATTGGTTCTTGGACGAACTTCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTT
CGGTTCCTTAAAGTATTCAAGATGATCCATTCCTTCGAGCAATTTTCGAACATTCAATGCTCGGA
AATCGCATCTTTTCGTCCAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAA
CTTATTTACGTGAGAATTGATTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACTTTT
ACGAGTTCTTGTATAACTTCGGTTCCTTAAAGTATTCAAGATGATCCATTCCTTCCAGCAATTTT
CCAAACATTCCATGCTCGGGAAATCGCATCATTTGGTCCAAATAGTTTGTGATTTTGTAAACAAC
TTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTG
Found at i:307577 original size:216 final size:216
Alignment explanation
Indices: 307183--310313 Score: 3006
Period size: 216 Copynumber: 14.8 Consensus size: 216
307173 TTTTCTAAAC
* * * * * * * *
307183 AATCACATCAGTTGGTTCAAATAGTTTTTAATTTTGTATACAACTGTTGGTCTTTGAATTAAGAA
1 AATCGCATCATTTGGTCCAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAA
* * ** * *
307248 CATATTTACGTGAGAATTGTTTCTCT-TCTGGTTCTTGGACGAGCACCCGAACTTGTAAAACTTT
66 CTTATTTACGTGAGAATTGTTTCTCTCT-TGGTTCTTGGACGAACTTCTGAACTTGTCAAACTTT
* * *
307312 TACGAGTTCTTTTATAACTTCGGTTTCTTAAAGTATTCAAGATGATCCATTCCTTCGAGAAATTT
130 TACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTT
*
307377 TCTGAACATTCCATGCTCGGGG
195 TCTGAACATTCCATGCTCGGGA
* * ** *
307399 AATAGCATCATTTGGTCTAAATAGTTTGTGGTTTTGTAAACAACTTTTGGTCTTTGAATTAGAAA
1 AATCGCATCATTTGGTCCAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAA
* * * * * * * * * *
307464 CTTATTTACGTAAGAATTGTTTGTTTATTTGCTATTGGCCGAACTTCTGAACTTGTAAAACTTCT
66 CTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCTGAACTTGTCAAACTTTT
* * * * * * * *
307529 ACAAGCTCTTTTATAAGTTTGGTTCATTAAAGTATTCTAGACGATCCATTCCTTCTAGTAATTTT
131 ACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTT
* *
307594 -TCGAACATTCCGTGCTCAGGA
196 CT-GAACATTCCATGCTCGGGA
* * * * *
307615 AATCGCATCATTTGGTCAAAATAGTTTCTCATGTTGTGACCAACTTTTGGTCTTTGAATT-AAAA
1 AATCGCATCATTTGGTCCAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAA
*
307679 CTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGATGAACTT-TCGAACTTGTCAGACTAA
66 CTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCT-GAACTTGT----C-AA
* * * * ** *
307743 ACTTTTACGAGTTCTTATATAACTTCAGTTCCTTAAAGTATCCAAGATGATCCATTCCTTAAAGA
125 ACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGC
*
307808 AATATTT-TGAACATTCCATGCTTGGGA
190 AAT-TTTCTGAACATTCCATGCTCGGGA
* * * *
307835 AATCACATCATTTGGTCCAAATTGTTTCTCATTTTGTAAACAACTTTTGGTCTTTGAGTTAAAAA
1 AATCGCATCATTTGGTCCAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAA
* * ** * *
307900 CTTATTTACGTGAGAATTTTTTGTCAATTGGTTCTTGGACGAACTTC-CAACTTGTCAAACTGTT
66 CTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCTGAACTTGTCAAACTTTT
*
307964 ACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTA-TCGAGACGATCCATTCCTTCGAGCAATTTT
131 ACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTT
*
308028 CTGAACATTCCATGCCCGGGA
196 CTGAACATTCCATGCTCGGGA
* ** * * * * *
308049 AATCGCATCTTTTGAACCATATAGTTTGTCATTTTATAAAAAACCTTTGGTCTTTGAAATAAAAA
1 AATCGCATCATTTGGTCCAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAA
* * * *
308114 CTTATTTACGTGAGAATTGTTTGTCTATTTGTTCTTGGCCGAACTTCTCGAACTTGTCAAACTTT
66 CTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCT-GAACTTGTCAAACTTT
* * * * **
308179 CACGATTTCTTTTGTAACATCTTTTCCTTAAAGTATT-AAGACGATCCATTCCTTC-ATGCAATT
130 TACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGA-GCAATT
*
308242 TTCAGAACATT---TG--C----
194 TTCTGAACATTCCATGCTCGGGA
* *
308256 -AT---A--ATTTGGTCCATATAGTTTGTCATTTCGTAAACAACTTTTGGTCTTTGAATTAAAAA
1 AATCGCATCATTTGGTCCAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAA
* * * * *
308315 GTTATTTACGTCAGAATTGTTTCTCTCTTTGTTCTGGGATGAACTT-TCGAACTTGTCAAACTTT
66 CTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCT-GAACTTGTCAAACTTT
* ** * * *
308379 TACGAGTTCTTTTATAACATCAATTCCTTAAAGTATTCAAGACGGTCCATGCCGTT-GGGCAATT
130 TACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCC-TTCGAGCAATT
* *
308443 TTCT-AACCATT---TGTTCTGGA
194 TTCTGAA-CATTCCATGCTCGGGA
** * *** * * *
308463 AATCATATAATTTGGAATAAATAGTTTGCCATTTTGTAAACAACTTTTGGCCTTTGATTTAAAAA
1 AATCGCATCATTTGGTCCAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAA
* * * *
308528 GTTATTTACGTGAGAATTGATTCTCTCTTGGTTCTTGGACTAACTTGC-GAACTTGTCAAACTTG
66 CTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTT-CTGAACTTGTCAAACTTT
* ** * *
308592 TATGAGTTCTTGAATAACTTCGGTTCCTTAAAGTATTCAAGATGATCCATTCCATCGAGCAATTT
130 TACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTT
* * * *
308657 TTTGAACTTTCAATGTTCGGGA
195 TCTGAACATTCCATGCTCGGGA
* * *
308679 AATCGCATAATTTGGTCCAAATAATTTGTTATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAA
1 AATCGCATCATTTGGTCCAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAA
* *
308744 GTTATTTACGT-AGAATTGTTTCTCTCTTGGTTCTT-G--G----TCTAAACTTGTCAAACTTTT
66 CTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCTGAACTTGTCAAACTTTT
* ** * * * *
308801 ACGAGCTCTTGAATAGCTTTGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGTAATTTC
131 ACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTT
*
308866 CCGAACATTCCATGCTCGGGA
196 CTGAACATTCCATGCTCGGGA
** * * *
308887 AAGAGCATCATTTTGTCCAAACAGTTAT-TCATTTTGTAAACAACTTTTGGTCTTTGATTTAAAA
1 AATCGCATCATTTGGTCCAAATAGTT-TGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAA
* * * * * *
308951 AGTTATTTATGCGAGAATTGTTTCTCCCTTGCG-TCATGGCCGAACTT-TCGAACTTGTCAAACT
65 ACTTATTTACGTGAGAATTGTTTCTCTCTTG-GTTCTTGGACGAACTTCT-GAACTTGTCAAACT
* * * * * * * *
309014 TTTACGAGTTCTTCTATAGCATCGGTCCCTTAAAGCATTAAAGGCAATCCATTCCTTCGAGCAAT
128 TTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAAT
*
309079 TTTCAGAACATT-C--G--C----
193 TTTCTGAACATTCCATGCTCGGGA
* *
309094 -AT---A--ATTTGGTCCAAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCGTTAAATTAAAA
1 AATCGCATCATTTGGTCC-AAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAA
*
309153 ACCTATTTA--TGCAGAATTGTTTCTCTCTTGGTTCTTGGACG-A------AACTTGTCAAACTT
65 ACTTATTTACGTG-AGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCTGAACTTGTCAAACTT
* ** * * * *
309209 TTACGAGCTCTTGAATAACTTTGGTTCCTTAAAGTATTCAAGACGGTCCATTCCTACGAGTAATT
129 TTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATT
* **
309274 TCCCAAACATTCCATGCTCGGGA
194 TTCTGAACATTCCATGCTCGGGA
** * * *
309297 AAGAGCATCATTTTGTCCAAACAATTAT-TCATTTTGTAAACAACTTTTGGTCTTTG-ATCTAAA
1 AATCGCATCATTTGGTCCAAATAGTT-TGTCATTTTGTAAACAACTTTTGGTCTTTGAAT-TAAA
* * * * * *
309360 AAGTTATTTACGCGAGAATTGTTTCCCCCTTGGTTCTTGGTCAAACTT-TCGAACTTGTCAAACT
64 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCT-GAACTTGTCAAACT
* * * * * *
309424 TTTACGAGTTCTTCTATAGCATCGGTCCCTTAAAGCATTAAAGACGATCCATTCCTTCGAGCAAT
128 TTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAAT
*
309489 TTTCAGAACATT-CA----C----
193 TTTCTGAACATTCCATGCTCGGGA
309504 -AT---A--ATTTGGTCCAAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAA
1 AATCGCATCATTTGGTCC-AAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAA
* * * * * *
309563 ACTTATTCACCTAAGAATTGTTTCTCTGTTGGTTCTTGGATGAACTTCCGAACTTGTCAAACTTT
65 ACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCTGAACTTGTCAAACTTT
* * * *
309628 TATGAGATT-TTTTATAACTTCGGTTCCTTAAAGTATTCAAGAAGATCCATTCCTTCCAGTAATT
130 TACGAG-TTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATT
* *
309692 TT-TCGAACATTCAATG-TCCAGGA
194 TTCT-GAACATTCCATGCT-CGGGA
* * * *
309715 AATCGCATCTTTTCGTCCAAATAGTTTGTCATTTTTTAAATAACTTTTGGTCTTTGAATTAAAAA
1 AATCGCATCATTTGGTCCAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAA
* * * *
309780 CTTATTTACATGAGAATTGATTCTCTCTTGGTTTTTGGACGAAC-T-T---C----CAAACTTGT
66 CTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCTGAACTTGTCAAACTTTT
* * * *
309836 ACGAGTTCTTTAATAACTTCGGTTCCTTAAAGTATTCAAGATGATCCATTCCATCAAGCAATTTT
131 ACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTT
**
309901 CCAAACATTCCATGCTCGGCG-
196 CTGAACATTCCATGCTCGG-GA
* * * * * *
309922 AATCGCATCATATGGTCTAAATAGTTTATGATATTTGTAAAAAACTTTTGGTCTTTCAATTAAAA
1 AATCGCATCATTTGGTCCAAATAGTTTGTCAT-TTTGTAAACAACTTTTGGTCTTTGAATTAAAA
* * * *
309987 ACTTATTTACGTGAGAATTGTTTGTCTATTGGTTCTTGGATGAACTTCCGAACTTGTCAAACTTT
65 ACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCTGAACTTGTCAAACTTT
* * * * *
310052 TACAAGTTCTTTCATAACTTCGATACCTTAAAGTA-TCATGACGATCCATTCCTTCGAGCAATTT
130 TACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTT
**
310116 T-TCGAACATTCTTTGCTCGGGA
195 TCT-GAACATTCCATGCTCGGGA
* * * * * *
310138 AATCGCACCTTTTCGTCCAAATAGTTTGTCATTTTGTAAAAAAAACTTTTGGTCTTCGATTTAAA
1 AATCGCATCATTTGGTCCAAATAGTTTGTCATTTTGT--AAACAACTTTTGGTCTTTGAATTAAA
* * * * * * * * * *
310203 AACTTAATTATGTGAGATTTATTTGC-GTATTGGTTCTCGGCCGAGCTTCCGAACTTGTCAAACT
64 AACTTATTTACGTGAGAATTGTTT-CTCTCTTGGTTCTTGGACGAACTTCTGAACTTGTCAAACT
* * *
310267 TTTACGATTTCTTTTATAACATCGGTTTCTTAAAGTATTCAAGACGA
128 TTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGA
Statistics
Matches: 2398, Mismatches: 395, Indels: 242
0.79 0.13 0.08
Matches are distributed among these distances:
194 73 0.03
195 1 0.00
197 1 0.00
199 1 0.00
200 55 0.02
201 157 0.07
202 200 0.08
203 9 0.00
204 1 0.00
206 6 0.00
207 107 0.04
208 269 0.11
209 56 0.02
210 4 0.00
211 5 0.00
212 4 0.00
213 167 0.07
214 139 0.06
215 124 0.05
216 677 0.28
217 153 0.06
218 8 0.00
220 132 0.06
221 49 0.02
ACGTcount: A:0.28, C:0.18, G:0.15, T:0.39
Consensus pattern (216 bp):
AATCGCATCATTTGGTCCAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAA
CTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCTGAACTTGTCAAACTTTT
ACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTT
CTGAACATTCCATGCTCGGGA
Found at i:309153 original size:202 final size:202
Alignment explanation
Indices: 308915--310126 Score: 877
Period size: 202 Copynumber: 5.9 Consensus size: 202
308905 AAACAGTTAT
* *
308915 TCATTTTGTAAACAACTTTTGGTCTTTGATTTAAAAAGTTATTTATGCGAGAATTGTTTCTCCCT
1 TCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTATGCGAGAATTGTTTCTCCCT
* * *
308980 TGCG-TCATGGCCGAACTTTCGAACTTGTCAAACTTTTACGAGTTCTTCTATAGCATCGGTCCCT
66 TG-GTTCTTGGACGAACTTTCGAACTTGTCAAACTTTTACGAGTTCTTCTATAACATCGGTCCCT
*
309044 TAAAGCATTAAAGGCAATCCATTCCTTCGAGCAATTTTCAGAACATTCGCATAATTTGGTCCAAA
130 TAAAGCATTAAAGACAATCCATTCCTTCGAGCAATTTTCAGAACATTCGCATAATTTGGTCCAAA
309109 ATAGTTTG
195 ATAGTTTG
* * * *
309117 TCATTTTGTAAACAACTTTTGGTCGTTAAATTAAAAACCTATTTATGC-AGAATTGTTTCTCTCT
1 TCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTATGCGAGAATTGTTTCTCCCT
* ** * * *
309181 TGGTTCTTGGACG-A------AACTTGTCAAACTTTTACGAGCTCTTGAATAACTTTGGTTCCTT
66 TGGTTCTTGGACGAACTTTCGAACTTGTCAAACTTTTACGAGTTCTTCTATAACATCGGTCCCTT
* * ** * * * *
309239 AAAGTATTCAAGACGGTCCATTCCTACGAGTAATTTCCCAAACATTCCATGCTCGGGAAAGAGCA
131 AAAGCATTAAAGACAATCCATTCCTTCGAGCAATTT-TCAGA-A---CAT--TC--------GCA
* *
309304 TCATTTTGTCCAAACA-A-TTAT-
181 TAATTTGGTCCAAA-ATAGTT-TG
* * *
309325 TCATTTTGTAAACAACTTTTGGTCTTTG-ATCTAAAAAGTTATTTACGCGAGAATTGTTTCCCCC
1 TCATTTTGTAAACAACTTTTGGTCTTTGAAT-TAAAAACTTATTTATGCGAGAATTGTTTCTCCC
* * *
309389 TTGGTTCTTGGTCAAACTTTCGAACTTGTCAAACTTTTACGAGTTCTTCTATAGCATCGGTCCCT
65 TTGGTTCTTGGACGAACTTTCGAACTTGTCAAACTTTTACGAGTTCTTCTATAACATCGGTCCCT
* *
309454 TAAAGCATTAAAGACGATCCATTCCTTCGAGCAATTTTCAGAACATTCACATAATTTGGTCCAAA
130 TAAAGCATTAAAGACAATCCATTCCTTCGAGCAATTTTCAGAACATTCGCATAATTTGGTCCAAA
309519 ATAGTTTG
195 ATAGTTTG
* * * **
309527 TCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTCA-CCTAAGAATTGTTTCTCTG
1 TCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTATGC-GAGAATTGTTTCTCCC
* * * * * *
309591 TTGGTTCTTGGATGAACTTCCGAACTTGTCAAACTTTTATGAGATT-TTTTATAACTTCGGTTCC
65 TTGGTTCTTGGACGAACTTTCGAACTTGTCAAACTTTTACGAG-TTCTTCTATAACATCGGTCCC
* * * *
309655 TTAAAGTATTCAAGA-AGATCCATTCCTTCCAGTAATTTTTC-GAACATTCAATGTCCAGGAAAT
129 TTAAAGCATTAAAGACA-ATCCATTCCTTCGAGCAA-TTTTCAGAACATTC---G--C-----AT
* *
309718 CGCATCTTTTCGTCC-AAATAGTTTG
182 ---A--ATTTGGTCCAAAATAGTTTG
* * *** * *
309743 TCATTTTTTAAATAACTTTTGGTCTTTGAATTAAAAACTTATTTACATGAGAATTGATTCTCTCT
1 TCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTATGCGAGAATTGTTTCTCCCT
* * * *
309808 TGGTTTTTGGACGAAC-TT----C----CAAACTTGTACGAGTTCTT-TAATAACTTCGGTTCCT
66 TGGTTCTTGGACGAACTTTCGAACTTGTCAAACTTTTACGAGTTCTTCT-ATAACATCGGTCCCT
* * ** * * *
309863 TAAAGTATTCAAGATGATCCATTCCATCAAGCAATTTTCCAAACATTCCATGCTCGGCGAATCGC
130 TAAAGCATTAAAGACAATCCATTCCTTCGAGCAATTTT-CAGA-A---CAT--TC-GC--AT---
* * *
309928 ATCATATGGT-CTAAATAGTTTA
182 A--ATTTGGTCCAAAATAGTTTG
* * * * * * **
309950 TGATATTTGTAAAAAACTTTTGGTCTTTCAATTAAAAACTTATTTACGTGAGAATTGTTTGTCTA
1 TCAT-TTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTATGCGAGAATTGTTTCTCCC
* * * * * *
310015 TTGGTTCTTGGATGAACTTCCGAACTTGTCAAACTTTTACAAGTTCTT-TCATAACTTCGATACC
65 TTGGTTCTTGGACGAACTTTCGAACTTGTCAAACTTTTACGAGTTCTTCT-ATAACATCGGTCCC
* * * *
310079 TTAAAGTA-TCATGACGATCCATTCCTTCGAGCAATTTTTC-GAACATTC
129 TTAAAGCATTAAAGACAATCCATTCCTTCGAGCAA-TTTTCAGAACATTC
310127 TTTGCTCGGG
Statistics
Matches: 815, Mismatches: 121, Indels: 141
0.76 0.11 0.13
Matches are distributed among these distances:
194 66 0.08
195 3 0.00
196 1 0.00
199 3 0.00
200 3 0.00
201 43 0.05
202 186 0.23
203 9 0.01
206 8 0.01
207 87 0.11
208 111 0.14
209 48 0.06
210 3 0.00
211 7 0.01
212 6 0.01
213 1 0.00
214 4 0.00
215 6 0.01
216 171 0.21
217 49 0.06
ACGTcount: A:0.28, C:0.19, G:0.14, T:0.38
Consensus pattern (202 bp):
TCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTATGCGAGAATTGTTTCTCCCT
TGGTTCTTGGACGAACTTTCGAACTTGTCAAACTTTTACGAGTTCTTCTATAACATCGGTCCCTT
AAAGCATTAAAGACAATCCATTCCTTCGAGCAATTTTCAGAACATTCGCATAATTTGGTCCAAAA
TAGTTTG
Found at i:309271 original size:410 final size:411
Alignment explanation
Indices: 307844--310313 Score: 2267
Period size: 410 Copynumber: 5.9 Consensus size: 411
307834 AAATCACATC
* * *
307844 ATTTGGTCCAAATTGTTTCTCATTTTGTAAACAACTTTTGGTCTTTGAGTTAAAAACTTATTTAC
1 ATTTGGTCCAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTA-
* * ** * *
307909 GTG-AGAATTTTTTGTCAATTGGTTCTTGGACGAACTTCCAACTTGTCAAACTGTTACGAGTTCT
65 -TGCAGAATTGTTTCTCTCTTGGTTCTTGGACGAA----CAACTTGTCAAACTTTTACGAGCTCT
* * * *
307973 TTTATAACTTCGGTTCCTTAAAGTA-TCGAGACGATCCATTCCTTCGAGCAATTTTCTGAACATT
125 TTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGTAATTTCCCGAACATT
* ** * * * * *
308037 CCATGCCCGGGAAATCGCATC-TTTTGAACCATATAGTTTGTCATTTTATAAAAAACCTTTGGTC
190 CCATGCTCGGGAAAGAGCATCATTTTG-TCCAAATAGTTTGTCATTTTGTAAACAACTTTTGGTC
** * * * ** *
308101 TTTGAAATAAAAACTTATTTACGTGAGAATTGTTTGTCTATTTGTTCTTGGCCGAACTTCTCGAA
254 TTTGATTTAAAAAGTTATTTACGCGAGAATTGTTTCTCCCTTGGTTCTTGGCCGAACTT-TCGAA
* * * * ** * *
308166 CTTGTCAAACTTTCACGATTTCTTTTGTAACATCTTTTCCTTAAAGTATT-AAGACGATCCATTC
318 CTTGTCAAACTTTTACGAGTTCTTCTATAACATCGGTCCCTTAAAGCATTAAAGACGATCCATTC
*
308230 CTTC-ATGCAATTTTCAGAACATTTGCATA
383 CTTCGA-GCAATTTTCAGAACATTCGCATA
* * * *
308259 ATTTGGTCCATATAGTTTGTCATTTCGTAAACAACTTTTGGTCTTTGAATTAAAAAGTTATTTAC
1 ATTTGGTCCAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTAT
* * * *
308324 GTCAGAATTGTTTCTCTCTTTGTTCTGGGATGAACTTTCGAACTTGTCAAACTTTTACGAGTTCT
66 G-CAGAATTGTTTCTCTCTTGGTTCTTGGACGAA----C-AACTTGTCAAACTTTTACGAGCTCT
* ** * * * * * *
308389 TTTATAACATCAATTCCTTAAAGTATTCAAGACGGTCCATGCCGTT-GGGCAATTT-TCTAACCA
125 TTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCC-TTCGAGTAATTTCCCGAA-CA
* * * * * * *** *
308452 TT---TGTTCTGGAAATCA-TATAATTTGGAATAAATAGTTTGCCATTTTGTAAACAACTTTTGG
188 TTCCATGCTCGGGAAA-GAGCATCATTTTGTCCAAATAGTTTGTCATTTTGTAAACAACTTTTGG
* * * * * * *
308513 CCTTTGATTTAAAAAGTTATTTACGTGAGAATTGATTCTCTCTTGGTTCTTGGACTAACTTGCGA
252 TCTTTGATTTAAAAAGTTATTTACGCGAGAATTGTTTCTCCCTTGGTTCTTGGCCGAACTTTCGA
* * ** * * * * *
308578 ACTTGTCAAACTTGTATGAGTTCTTGAATAACTTCGGTTCCTTAAAGTATTCAAGATGATCCATT
317 ACTTGTCAAACTTTTACGAGTTCTTCTATAACATCGGTCCCTTAAAGCATTAAAGACGATCCATT
* **
308643 CCATCGAGCAATTTTTTGAACTTTCAATGTTCGGGAAATCGCATA
382 CCTTCGAGCAATTTTCAGAA----C-A---T-------TCGCATA
* * * *
308688 ATTTGGTCCAAATAATTTGTTATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAAGTTATTTAC
1 ATTTGGTCCAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTAT
* * * **
308753 GTAGAATTGTTTCTCTCTTGGTTCTTGGTC-TA-AACTTGTCAAACTTTTACGAGCTCTTGAATA
66 GCAGAATTGTTTCTCTCTTGGTTCTTGGACGAACAACTTGTCAAACTTTTACGAGCTCTTTTATA
* *
308816 GCTTTGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGTAATTTCCCGAACATTCCATGC
131 ACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGTAATTTCCCGAACATTCCATGC
*
308881 TCGGGAAAGAGCATCATTTTGTCCAAACAGTTAT-TCATTTTGTAAACAACTTTTGGTCTTTGAT
196 TCGGGAAAGAGCATCATTTTGTCCAAATAGTT-TGTCATTTTGTAAACAACTTTTGGTCTTTGAT
* *
308945 TTAAAAAGTTATTTATGCGAGAATTGTTTCTCCCTTGCG-TCATGGCCGAACTTTCGAACTTGTC
260 TTAAAAAGTTATTTACGCGAGAATTGTTTCTCCCTTG-GTTCTTGGCCGAACTTTCGAACTTGTC
* * *
309009 AAACTTTTACGAGTTCTTCTATAGCATCGGTCCCTTAAAGCATTAAAGGCAATCCATTCCTTCGA
324 AAACTTTTACGAGTTCTTCTATAACATCGGTCCCTTAAAGCATTAAAGACGATCCATTCCTTCGA
309074 GCAATTTTCAGAACATTCGCATA
389 GCAATTTTCAGAACATTCGCATA
* * *
309097 ATTTGGTCCAAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCGTTAAATTAAAAACCTATTTA
1 ATTTGGTCC-AAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTA
**
309162 TGCAGAATTGTTTCTCTCTTGGTTCTTGGACG-A-AACTTGTCAAACTTTTACGAGCTCTTGAAT
65 TGCAGAATTGTTTCTCTCTTGGTTCTTGGACGAACAACTTGTCAAACTTTTACGAGCTCTTTTAT
* * * *
309225 AACTTTGGTTCCTTAAAGTATTCAAGACGGTCCATTCCTACGAGTAATTTCCCAAACATTCCATG
130 AACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGTAATTTCCCGAACATTCCATG
* *
309290 CTCGGGAAAGAGCATCATTTTGTCCAAACAATTAT-TCATTTTGTAAACAACTTTTGGTCTTTGA
195 CTCGGGAAAGAGCATCATTTTGTCCAAATAGTT-TGTCATTTTGTAAACAACTTTTGGTCTTTGA
* * * *
309354 TCTAAAAAGTTATTTACGCGAGAATTGTTTCCCCCTTGGTTCTTGGTCAAACTTTCGAACTTGTC
259 TTTAAAAAGTTATTTACGCGAGAATTGTTTCTCCCTTGGTTCTTGGCCGAACTTTCGAACTTGTC
*
309419 AAACTTTTACGAGTTCTTCTATAGCATCGGTCCCTTAAAGCATTAAAGACGATCCATTCCTTCGA
324 AAACTTTTACGAGTTCTTCTATAACATCGGTCCCTTAAAGCATTAAAGACGATCCATTCCTTCGA
*
309484 GCAATTTTCAGAACATTCACATA
389 GCAATTTTCAGAACATTCGCATA
*
309507 ATTTGGTCCAAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTCA
1 ATTTGGTCC-AAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTA
* * * * *
309572 CCT-AAGAATTGTTTCTCTGTTGGTTCTTGGATGAACTTCCGAACTTGTCAAACTTTTATGAGAT
65 --TGCAGAATTGTTTCTCTCTTGGTTCTTGGACGAA----C-AACTTGTCAAACTTTTACGAGCT
* * * **
309636 TTTTTATAACTTCGGTTCCTTAAAGTATTCAAGAAGATCCATTCCTTCCAGTAATTTTTCGAACA
123 CTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGTAATTTCCCGAACA
* * ** * *
309701 TTCAATG-TCCAGGAAATCGCATC-TTTTCGTCCAAATAGTTTGTCATTTTTTAAATAACTTTTG
188 TTCCATGCT-CGGGAAAGAGCATCATTTT-GTCCAAATAGTTTGTCATTTTGTAAACAACTTTTG
* * ** * * *
309764 GTCTTTGAATTAAAAACTTATTTACATGAGAATTGATTCTCTCTTGGTT-TTTG--G-A----CG
251 GTCTTTGATTTAAAAAGTTATTTACGCGAGAATTGTTTCTCCCTTGGTTCTTGGCCGAACTTTCG
* * * * * * *
309821 AACTT-CCAAACTTGTACGAGTTCTT-TAATAACTTCGGTTCCTTAAAGTATTCAAGATGATCCA
316 AACTTGTCAAACTTTTACGAGTTCTTCT-ATAACATCGGTCCCTTAAAGCATTAAAGACGATCCA
* * *
309884 TTCCATCAAGCAATTTTCCAAACATTCCATGCTCGGCGAATCGCA
380 TTCCTTCGAGCAATTTT-CAGA-A---CAT--TC-GC--AT---A
* * * * * *
309929 TCATATGGTCTAAATAGTTTATGATATTTGTAAAAAACTTTTGGTCTTTCAATTAAAAACTTATT
1 --ATTTGGTCCAAATAGTTTGTCAT-TTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATT
* * * *
309994 TACGTG-AGAATTGTTTGTCTATTGGTTCTTGGATGAACTTCCGAACTTGTCAAACTTTTACAAG
63 TA--TGCAGAATTGTTTCTCTCTTGGTTCTTGGACGAA----C-AACTTGTCAAACTTTTACGAG
* * * * * * **
310058 TTCTTTCATAACTTCGATACCTTAAAGTA-TCATGACGATCCATTCCTTCGAGCAATTTTTCGAA
121 CTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGTAATTTCCCGAA
** ** * *
310122 CATTCTTTGCTCGGGAAATCGCA-CCTTTTCGTCCAAATAGTTTGTCATTTTGTAAAAAAAACTT
186 CATTCCATGCTCGGGAAAGAGCATCATTTT-GTCCAAATAGTTTGTCATTTTGT--AAACAACTT
* * * * * * * * * *
310186 TTGGTCTTCGATTTAAAAACTTAATTATGTGAGATTTATTTGCGT--ATTGGTTCTCGGCCGAGC
248 TTGGTCTTTGATTTAAAAAGTTATTTACGCGAGAATTGTTT-C-TCCCTTGGTTCTTGGCCGAAC
* * * ** * *
310249 TTCCGAACTTGTCAAACTTTTACGATTTCTTTTATAACATCGGTTTCTTAAAGTATTCAAGACGA
311 TTTCGAACTTGTCAAACTTTTACGAGTTCTTCTATAACATCGGTCCCTTAAAGCATTAAAGACGA
Statistics
Matches: 1730, Mismatches: 243, Indels: 145
0.82 0.11 0.07
Matches are distributed among these distances:
408 1 0.00
409 80 0.05
410 445 0.26
411 28 0.02
412 2 0.00
413 45 0.03
414 120 0.07
415 91 0.05
416 51 0.03
417 36 0.02
418 165 0.10
419 4 0.00
420 3 0.00
421 69 0.04
422 6 0.00
423 89 0.05
424 294 0.17
425 49 0.03
426 3 0.00
427 2 0.00
428 25 0.01
429 68 0.04
433 7 0.00
434 46 0.03
435 1 0.00
ACGTcount: A:0.28, C:0.18, G:0.15, T:0.39
Consensus pattern (411 bp):
ATTTGGTCCAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTAT
GCAGAATTGTTTCTCTCTTGGTTCTTGGACGAACAACTTGTCAAACTTTTACGAGCTCTTTTATA
ACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGTAATTTCCCGAACATTCCATGC
TCGGGAAAGAGCATCATTTTGTCCAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGATT
TAAAAAGTTATTTACGCGAGAATTGTTTCTCCCTTGGTTCTTGGCCGAACTTTCGAACTTGTCAA
ACTTTTACGAGTTCTTCTATAACATCGGTCCCTTAAAGCATTAAAGACGATCCATTCCTTCGAGC
AATTTTCAGAACATTCGCATA
Found at i:309762 original size:626 final size:618
Alignment explanation
Indices: 306768--310310 Score: 2918
Period size: 626 Copynumber: 5.6 Consensus size: 618
306758 TTCAGAACAT
* * * *
306768 TCGCATAATTTGGTCCAAAATAGTTTGTTATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAAC
1 TCGCATCATTTGGTCC-AAATAATTTGTCATTTTGTAAAAAACTTTTGGTCTTTG-ATTAAAAAC
* * * * *
306833 TTATTCACCTGAGAATTGTTTCTCTGTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACATTTT
64 TTATTTACGTGAGAATTGTTTCTCTATTGGTTCTTGG-TGAACTTTCGAACTTGTCAAAC-TTTT
* * * ** * *
306898 -CGAGTTCTTTGATAACTTCGATTCCTTAAATTATTCAAGATAATCCATTCCTTCAAGAAATTTT
127 ACGAGTTCTTT-ATAACATCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTT
* * *** *
306962 CCA-AACATTCCACGCTCGAGAAATCGCATCATTTAGTCCAAATAGTTTGACATCGAGTAAACAG
191 -CAGAACATT-CA----C-----AT---A--ATTTGGTCCAAATAGTTTGTCATTTTGTAAACAA
* * * * * **
307026 CTTTTGGTCTTTG-A-TATAAAACTTATTTACGTGAGAATCGTTTGTCTATTGCTTCTTGGCCGA
240 CTTTTGGTCTTTGAATTA-AAAACTTATTTACCTGAGAATTGTTTCTCTCTTGGTTCTTGGATGA
* * * * * * *
307089 ACTCTCGAATTTGTTAAACTTTTACGAGTTATTTTATAACTTCAGTTCCTTAAAGTTTTCAAGAT
304 ACTTTCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACATCAGTTCCTTAAAGTATTCAAGAA
* * * * *
307154 GATCCATTCCGTCAAGCAATTTTCTAA-A------C---AATCACATCAGTTGGTTCAAATAGTT
369 GATCCATTCCTTCGAGCAATTTTCGAACATTCTGCCGGAAATCACATCATTTGGTCCAAATAGTT
* * * * * * *
307209 TTTAATTTTGTATACAACTGTTGGTCTTTGAATTAAGAACATATTTACGTGAGAATTGTTTCTCT
434 TGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTAC-TGAGAATTGATTCTCT
* * ** *
307274 -TCTGGTTCTTGGACGAGCACCCGAACTTGTAAAACTTTTACGAGTTCTTTTATAACTTCGGTTT
498 CT-TGGTTCTTGGACGA--A----AACTTGTCAAACTTGTACGAGTTCTTGAATAACTTCGGTTC
* * * ** *
307338 CTTAAAGTATTCAAGATGATCCATTCCTTCGAGAAATTTTCTGAACATTCCATGCTCGGGGAA
556 CTTAAAGTATTCAAGACGATCCATTCCATCGAGCAATTTTCCAAACATTCCATGCTCGGGAAA
* * * ** * *
307401 TAGCATCATTTGGTCTAAATAGTTTGTGGTTTTGTAAACAACTTTTGGTCTTTGAATTAGAAACT
1 TCGCATCATTTGGTCCAAATAATTTGTCATTTTGTAAAAAACTTTTGGTCTTTG-ATTAAAAACT
* * * * * * * * *
307466 TATTTACGTAAGAATTGTTTGTTTATTTGCTATTGGCCGAAC-TTCTGAACTTGTAAAACTTCTA
65 TATTTACGTGAGAATTGTTTCTCTATTGGTTCTTGG-TGAACTTTC-GAACTTGTCAAACTTTTA
* * ** * * * * *
307530 CAAGCTCTTTTATAAGTTTGGTTCATTAAAGTATTCTAGACGATCCATTCCTTCTAGTAATTTTT
128 CGAGTTC-TTTATAACATCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAA-TTTT
* * * * * *
307595 C-GAACATTCCGTGCTCAGGAAATCGCATCATTTGGTCAAAATAGTTTCTCATGTTGTGACCAAC
191 CAGAACA-----T--TC-----A---CATAATTTGGTCCAAATAGTTTGTCATTTTGTAAACAAC
*
307659 TTTTGGTCTTTGAATT-AAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGATGAAC
241 TTTTGGTCTTTGAATTAAAAACTTATTTACCTGAGAATTGTTTCTCTCTTGGTTCTTGGATGAAC
* * *
307723 TTTCGAACTTGTCAGACTAAACTTTTACGAGTTCTTATATAACTTCAGTTCCTTAAAGTATCCAA
306 TTTCGAACTTGT----C-AAACTTTTACGAGTTCTTTTATAACATCAGTTCCTTAAAGTATTCAA
* ** * * *
307788 GATGATCCATTCCTTAAAGAAATATTTTGAACATTCCATGCTTGGGAAATCACATCATTTGGTCC
366 GAAGATCCATTCCTTCGAGCAAT-TTTCGAACATT-C-TGC--CGGAAATCACATCATTTGGTCC
* * *
307853 AAATTGTTTCTCATTTTGTAAACAACTTTTGGTCTTTGAGTTAAAAACTTATTTACGTGAGAATT
426 AAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTAC-TGAGAATT
** * ** **
307918 TTTTGTCAATTGGTTCTTGGACGAACTTCCAACTTGTCAAAC-TGTTACGAGTTCTTTTATAACT
490 GATTCTCTCTTGGTTCTTGGACGAA-----AACTTGTCAAACTTG-TACGAGTTCTTGAATAACT
* * ** *
307982 TCGGTTCCTTAAAGTA-TCGAGACGATCCATTCCTTCGAGCAATTTTCTGAACATTCCATGCCCG
549 TCGGTTCCTTAAAGTATTCAAGACGATCCATTCCATCGAGCAATTTTCCAAACATTCCATGCTCG
308046 GGAAA
614 GGAAA
* ** * * * * *
308051 TCGCATCTTTTGAACCATATAGTTTGTCATTTTATAAAAAACCTTTGGTCTTTGAAATAAAAACT
1 TCGCATCATTTGGTCCAAATAATTTGTCATTTTGTAAAAAACTTTTGGTCTTTG-ATTAAAAACT
* * * *
308116 TATTTACGTGAGAATTGTTTGTCTATTTGTTCTTGGCCGAACTTCTCGAACTTGTCAAACTTTCA
65 TATTTACGTGAGAATTGTTTCTCTATTGGTTCTTGG-TGAACTT-TCGAACTTGTCAAACTTTTA
* * **
308181 CGATTTCTTTTGTAACATCTTTTCCTTAAAGTATT-AAGACGATCCATTCCTTC-ATGCAATTTT
128 CGAGTTC-TTTATAACATCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGA-GCAATTTT
** * *
308244 CAGAACATTTGCATAATTTGGTCCATATAGTTTGTCATTTCGTAAACAACTTTTGGTCTTTGAAT
191 CAGAACATTCACATAATTTGGTCCAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAAT
* * * * *
308309 TAAAAAGTTATTTACGTCAGAATTGTTTCTCTCTTTGTTCTGGGATGAACTTTCGAACTTGTCAA
256 TAAAAACTTATTTACCTGAGAATTGTTTCTCTCTTGGTTCTTGGATGAACTTTCGAACTTGTCAA
* * * * *
308374 ACTTTTACGAGTTCTTTTATAACATCAATTCCTTAAAGTATTCAAGACGGTCCATGCCGTT-GGG
321 ACTTTTACGAGTTCTTTTATAACATCAGTTCCTTAAAGTATTCAAGAAGATCCATTCC-TTCGAG
* * * * *** *
308438 CAATTTTCTAACCATT-TGTTCTGGAAATCATATAATTTGGAATAAATAGTTTGCCATTTTGTAA
385 CAATTTTCGAA-CATTCTG--CCGGAAATCACATCATTTGGTCCAAATAGTTTGTCATTTTGTAA
* * *
308502 ACAACTTTTGGCCTTTGATTTAAAAAGTTATTTACGTGAGAATTGATTCTCTCTTGGTTCTTGGA
447 ACAACTTTTGGTCTTTGAATTAAAAACTTATTTAC-TGAGAATTGATTCTCTCTTGGTTCTTGGA
* *
308567 CTAACTTGCGAACTTGTCAAACTTGTATGAGTTCTTGAATAACTTCGGTTCCTTAAAGTATTCAA
511 CGAA------AACTTGTCAAACTTGTACGAGTTCTTGAATAACTTCGGTTCCTTAAAGTATTCAA
* *** * * *
308632 GATGATCCATTCCATCGAGCAATTTTTTGAACTTTCAATGTTCGGGAAA
570 GACGATCCATTCCATCGAGCAATTTTCCAAACATTCCATGCTCGGGAAA
* * * *
308681 TCGCATAATTTGGTCCAAATAATTTGTTATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAAGT
1 TCGCATCATTTGGTCCAAATAATTTGTCATTTTGTAAAAAACTTTTGGTCTTTG-ATTAAAAACT
* *
308746 TATTTACGT-AGAATTGTTTCTCTCTTGGTTCTTGGT---C--T-AAACTTGTCAAACTTTTACG
65 TATTTACGTGAGAATTGTTTCTCTATTGGTTCTTGGTGAACTTTCGAACTTGTCAAACTTTTACG
* * * * * * * *
308804 AGCTCTTGAATAGCTTTGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGTAATTTCCCG
130 AGTTCTT-TATAACATCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTCAG
* * *
308869 AACATTCCATGCTCGGGAAAGAGCATCATTTTGTCCAAACAGTTAT-TCATTTTGTAAACAACTT
194 -A-A---CAT--TC-------A-CATAATTTGGTCCAAATAGTT-TGTCATTTTGTAAACAACTT
* * * * * **
308933 TTGGTCTTTGATTTAAAAAGTTATTTATGC-GAGAATTGTTTCTCCCTTGCG-TCATGGCCGAAC
243 TTGGTCTTTGAATTAAAAACTTATTTA-CCTGAGAATTGTTTCTCTCTTG-GTTCTTGGATGAAC
* * * * * * *
308996 TTTCGAACTTGTCAAACTTTTACGAGTTCTTCTATAGCATCGGTCCCTTAAAGCATTAAAGGCA-
306 TTTCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACATCAGTTCCTTAAAGTATTCAA-GAAG
309060 ATCCATTCCTTCGAGCAATTTTCAGAACATTC-G-C----AT---A--ATTTGGTCCAAAATAGT
370 ATCCATTCCTTCGAGCAATTTTC-GAACATTCTGCCGGAAATCACATCATTTGGTCC-AAATAGT
* * * *
309114 TTGTCATTTTGTAAACAACTTTTGGTCGTTAAATTAAAAACCTATTTA-TGCAGAATTGTTTCTC
433 TTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTACTG-AGAATTGATTCTC
* * *
309178 TCTTGGTTCTTGGACG-AAACTTGTCAAACTTTTACGAGCTCTTGAATAACTTTGGTTCCTTAAA
497 TCTTGGTTCTTGGACGAAAACTTGTCAAACTTGTACGAGTTCTTGAATAACTTCGGTTCCTTAAA
* * *
309242 GTATTCAAGACGGTCCATTCC-TACGAGTAATTTCCCAAACATTCCATGCTCGGGAAA
562 GTATTCAAGACGATCCATTCCAT-CGAGCAATTTTCCAAACATTCCATGCTCGGGAAA
** * * * *
309299 GAGCATCATTTTGTCCAAACAATTAT-TCATTTTGTAAACAACTTTTGGTCTTTGATCTAAAAAG
1 TCGCATCATTTGGTCCAAATAATT-TGTCATTTTGTAAAAAACTTTTGGTCTTTGAT-TAAAAAC
* * ** *
309363 TTATTTACGCGAGAATTGTTTCCCCCTTGGTTCTTGGTCAAACTTTCGAACTTGTCAAACTTTTA
64 TTATTTACGTGAGAATTGTTTCTCTATTGGTTCTTGGT-GAACTTTCGAACTTGTCAAACTTTTA
* * * *
309428 CGAGTTCTTCTATAGCATCGGTCCCTTAAAGCATTAAAGACGATCCATTCCTTCGAGCAATTTTC
128 CGAGTTCTT-TATAACATCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTC
309493 AGAACATTCACATAATTTGGTCCAAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAAT
192 AGAACATTCACATAATTTGGTCC-AAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAAT
* * * *
309558 TAAAAACTTATTCACCTAAGAATTGTTTCTCTGTTGGTTCTTGGATGAACTTCCGAACTTGTCAA
256 TAAAAACTTATTTACCTGAGAATTGTTTCTCTCTTGGTTCTTGGATGAACTTTCGAACTTGTCAA
* * * *
309623 ACTTTTATGAGATT-TTTTATAACTTCGGTTCCTTAAAGTATTCAAGAAGATCCATTCCTTCCAG
321 ACTTTTACGAG-TTCTTTTATAACATCAGTTCCTTAAAGTATTCAAGAAGATCCATTCCTTCGAG
* * * * *
309687 TAATTTTTCGAACATTCAATGTCCAGGAAATCGCATCTTTTCGTCCAAATAGTTTGTCATTTTTT
385 CAA-TTTTCGAACATTC--TG-CC-GGAAATCACATCATTTGGTCCAAATAGTTTGTCATTTTGT
* *
309752 AAATAACTTTTGGTCTTTGAATTAAAAACTTATTTACATGAGAATTGATTCTCTCTTGGTTTTTG
445 AAACAACTTTTGGTCTTTGAATTAAAAACTTATTTAC-TGAGAATTGATTCTCTCTTGGTTCTTG
* * *
309817 GACG--AACTT-CCAAACTTGTACGAGTTCTTTAATAACTTCGGTTCCTTAAAGTATTCAAGATG
509 GACGAAAACTTGTCAAACTTGTACGAGTTCTTGAATAACTTCGGTTCCTTAAAGTATTCAAGACG
*
309879 ATCCATTCCATCAAGCAATTTTCCAAACATTCCATGCTCGGCG-AA
574 ATCCATTCCATCGAGCAATTTTCCAAACATTCCATGCTCGG-GAAA
* * * * * *
309924 TCGCATCATATGGTCTAAATAGTTTATGATATTTGTAAAAAACTTTTGGTCTTTCAATTAAAAAC
1 TCGCATCATTTGGTCCAAATAATTTGTCAT-TTTGTAAAAAACTTTTGGTCTTT-GATTAAAAAC
* *
309989 TTATTTACGTGAGAATTGTTTGTCTATTGGTTCTTGGATGAACTTCCGAACTTGTCAAACTTTTA
64 TTATTTACGTGAGAATTGTTTCTCTATTGGTTCTTGG-TGAACTTTCGAACTTGTCAAACTTTTA
* * * * *
310054 CAAGTTCTTTCATAACTTCGATACCTTAAAGTA-TCATGACGATCCATTCCTTCGAGCAATTTTT
128 CGAGTTCTTT-ATAACATCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAA-TTTT
* * * *
310118 C-GAACATTCTTTGCTCGGGAAATCGCACCTTTTCGTCCAAATAGTTTGTCATTTTGTAAAAAAA
191 CAGAACA-----T--TC---ACAT---A--ATTTGGTCCAAATAGTTTGTCATTTTGT--AAACA
* * * ** * * * * * **
310182 ACTTTTGGTCTTCGATTTAAAAACTTAATTATGTGAGATTTATTTGC-GTATTGGTTCTCGGCCG
239 ACTTTTGGTCTTTGAATTAAAAACTTATTTACCTGAGAATTGTTT-CTCTCTTGGTTCTTGGATG
* * * * *
310246 AGCTTCCGAACTTGTCAAACTTTTACGATTTCTTTTATAACATCGGTTTCTTAAAGTATTCAAGA
303 AACTTTCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACATCAGTTCCTTAAAGTATTCAAGA
310311 CGA
Statistics
Matches: 2390, Mismatches: 377, Indels: 278
0.78 0.12 0.09
Matches are distributed among these distances:
611 16 0.01
612 148 0.06
613 7 0.00
615 1 0.00
617 4 0.00
618 150 0.06
619 28 0.01
620 2 0.00
621 42 0.02
622 29 0.01
623 3 0.00
624 6 0.00
625 171 0.07
626 292 0.12
627 41 0.02
628 98 0.04
629 70 0.03
630 118 0.05
631 66 0.03
632 233 0.10
633 21 0.01
634 1 0.00
635 50 0.02
636 58 0.02
637 225 0.09
638 12 0.01
639 21 0.01
640 9 0.00
641 109 0.05
642 3 0.00
643 2 0.00
645 1 0.00
649 6 0.00
650 165 0.07
651 87 0.04
652 94 0.04
653 1 0.00
ACGTcount: A:0.28, C:0.18, G:0.15, T:0.39
Consensus pattern (618 bp):
TCGCATCATTTGGTCCAAATAATTTGTCATTTTGTAAAAAACTTTTGGTCTTTGATTAAAAACTT
ATTTACGTGAGAATTGTTTCTCTATTGGTTCTTGGTGAACTTTCGAACTTGTCAAACTTTTACGA
GTTCTTTATAACATCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTCAGAA
CATTCACATAATTTGGTCCAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAA
ACTTATTTACCTGAGAATTGTTTCTCTCTTGGTTCTTGGATGAACTTTCGAACTTGTCAAACTTT
TACGAGTTCTTTTATAACATCAGTTCCTTAAAGTATTCAAGAAGATCCATTCCTTCGAGCAATTT
TCGAACATTCTGCCGGAAATCACATCATTTGGTCCAAATAGTTTGTCATTTTGTAAACAACTTTT
GGTCTTTGAATTAAAAACTTATTTACTGAGAATTGATTCTCTCTTGGTTCTTGGACGAAAACTTG
TCAAACTTGTACGAGTTCTTGAATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCATC
GAGCAATTTTCCAAACATTCCATGCTCGGGAAA
Done.