genome.fa.s15290.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01015290.1 Kokia drynarioides strain JFW-HI SEQ_130335, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  218562

Tables:   1   

This is table  1  of  1  ( 81 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7089--7124	18	2.0	18	94	0	63	41	11	25	22	1.86
22361--22404	22	2.0	22	82	8	54	61	0	2	36	1.09
26437--26596	79	2.0	82	92	3	272	48	5	7	38	1.55
27126--27175	19	2.7	19	82	11	52	70	0	12	18	1.17
28813--28916	29	3.5	29	73	10	102	44	12	17	25	1.84
28816--28947	60	2.2	60	90	1	203	44	12	18	24	1.84
30179--30209	8	3.9	8	91	0	53	41	22	0	35	1.54
30235--30283	15	3.1	15	85	5	53	65	0	32	2	1.04
30235--30273	17	2.2	17	90	4	60	61	0	35	2	1.10
30728--30915	94	2.0	94	97	0	358	50	5	9	35	1.58
34495--34552	28	2.1	28	83	6	73	50	0	20	29	1.49
35075--35135	24	2.6	22	73	14	59	63	18	0	18	1.30
35123--35201	35	2.2	37	82	11	92	56	21	5	16	1.59
36912--36950	18	2.2	18	85	0	51	46	2	17	33	1.62
37271--37328	11	5.1	11	80	15	55	41	0	5	53	1.23
37295--37329	13	2.8	13	91	8	56	42	0	0	57	0.99
37363--37408	24	2.0	23	91	4	74	65	10	4	19	1.41
38128--38173	24	1.9	24	90	0	74	52	2	4	41	1.33
38149--38191	16	2.6	17	78	14	54	53	0	2	44	1.13
39314--39683	30	12.9	29	69	18	165	35	29	3	31	1.74
39349--39402	21	2.6	21	96	0	99	38	31	0	29	1.57
39320--39426	50	2.1	50	86	8	146	39	28	0	31	1.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39370--39562	30	6.5	29	79	8	210	37	29	1	32	1.67
39320--39432	51	2.2	49	86	7	147	38	29	0	31	1.64
39530--39639	58	1.9	58	84	3	150	32	29	8	30	1.86
39606--39684	29	2.7	28	75	14	79	34	31	3	30	1.76
40638--40712	35	2.2	34	79	9	80	30	4	4	61	1.33
40654--40726	35	2.1	35	84	7	94	27	5	4	63	1.35
40878--40924	24	2.0	24	95	0	85	70	0	2	27	0.99
48721--48789	34	2.0	35	91	5	113	43	0	2	53	1.15
48753--48787	11	3.2	11	87	0	52	42	0	2	54	1.15
48721--48788	17	4.0	17	76	17	61	42	0	2	54	1.15
50385--50430	19	2.5	19	82	13	60	56	2	0	41	1.11
50465--50517	15	3.5	15	71	5	52	26	13	0	60	1.33
50533--50592	25	2.4	25	97	0	111	31	5	13	50	1.63
50684--50733	6	8.3	6	97	0	73	26	50	18	6	1.69
58742--59027	70	4.1	70	93	0	482	34	13	8	43	1.74
58742--59027	140	2.0	140	97	0	536	34	13	8	43	1.74
59440--59498	31	2.0	31	83	6	77	35	0	1	62	1.05
59477--59506	9	3.2	9	95	4	51	13	0	0	86	0.57
65944--65994	15	3.2	16	77	8	50	23	3	1	70	1.14
65945--65978	15	2.3	15	90	5	52	26	0	2	70	1.01
72208--72341	69	1.9	69	81	0	160	49	12	4	33	1.61
77153--77190	16	2.4	16	90	0	58	36	18	0	44	1.50
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
79400--79442	19	2.3	19	87	0	59	67	9	6	16	1.40
86463--86531	36	1.9	36	91	5	113	33	2	39	24	1.70
88437--88507	23	3.1	23	89	0	106	42	19	26	11	1.85
92146--92235	38	2.4	38	83	7	112	45	1	2	51	1.21
93292--93371	39	2.1	39	90	0	124	26	20	13	40	1.89
94295--94476	46	4.1	44	77	8	163	28	21	18	30	1.97
96163--96234	16	3.9	19	70	23	55	62	5	1	30	1.26
101217--102230	207	5.0	205	82	9	1106	33	15	13	37	1.86
101367--102146	398	2.0	396	88	5	1162	33	15	13	37	1.87
102492--102629	68	2.0	68	98	0	267	19	25	13	42	1.87
108133--108181	20	2.4	21	82	6	64	55	0	2	42	1.11
113714--113750	3	12.3	3	100	0	74	67	0	0	32	0.91
114880--114924	22	2.0	24	82	8	58	55	11	6	26	1.59
118811--118928	53	2.2	53	95	0	209	29	14	11	44	1.81
123617--123693	39	2.0	40	92	2	129	48	0	12	38	1.42
123625--123689	20	3.3	20	68	10	62	50	0	15	33	1.44
123656--123714	31	1.9	31	86	6	84	49	1	16	32	1.56
123671--124043	179	2.2	169	79	13	414	45	3	12	38	1.59
123739--124159	181	2.4	176	83	9	479	41	4	11	42	1.60
128344--128413	26	2.7	26	76	18	74	44	0	2	52	1.15
128666--128698	6	5.7	6	96	3	59	0	12	0	87	0.53
135146--135177	6	5.3	6	96	0	55	68	12	0	18	1.20
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
158522--159005	203	2.4	203	86	4	636	22	23	25	28	1.99
162074--162142	31	2.2	31	84	5	95	46	17	0	36	1.48
164159--164202	23	2.0	23	87	12	67	47	22	4	25	1.70
165125--165159	18	1.9	18	88	0	52	40	0	0	60	0.97
169637--169673	18	2.1	18	94	0	65	24	29	0	45	1.53
182534--182588	23	2.3	24	84	12	69	58	0	1	40	1.09
196250--196355	42	2.5	41	84	4	149	52	12	0	33	1.45
197090--197139	25	2.0	25	96	0	91	48	22	4	26	1.68
199519--200007	243	2.0	245	94	0	865	41	18	13	26	1.87
202679--202719	20	2.0	20	85	0	55	41	4	2	51	1.36
202926--202988	26	2.3	26	81	13	65	34	0	0	65	0.93
205751--205802	19	2.8	18	80	13	61	34	1	5	57	1.33
207648--207713	23	2.9	23	73	15	64	45	13	25	15	1.83
216780--216876	40	2.4	40	82	0	113	39	19	26	14	1.90
216841--216930	41	2.2	41	80	4	101	34	18	25	21	1.96

Tables:   1

The End!