genome.fa.s15293.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01015293.1 Kokia drynarioides strain JFW-HI SEQ_130338, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  258884

Tables:   1   

This is table  1  of  1  ( 82 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
555--926	59	6.3	57	77	13	265	35	2	23	38	1.68
645--938	118	2.5	118	80	11	316	35	2	24	37	1.70
586--938	30	11.9	29	70	18	176	35	2	24	38	1.68
2813--2862	6	8.7	6	86	8	77	54	0	0	46	1.00
2813--2862	11	4.3	12	90	7	77	54	0	0	46	1.00
2815--2862	17	2.8	17	93	0	78	54	0	0	45	0.99
4628--4698	35	2.0	35	100	0	142	35	14	8	42	1.75
9403--9436	8	4.0	8	85	14	50	50	0	0	50	1.00
10895--10957	17	3.4	17	75	16	54	31	1	1	65	1.12
11182--11210	2	14.5	2	100	0	58	48	0	0	51	1.00
12499--12622	41	3.0	41	90	0	185	31	19	15	33	1.93
45179--45293	23	4.9	23	71	13	67	41	24	21	12	1.87
45258--45305	23	2.1	23	84	7	62	43	25	20	10	1.83
45368--45415	24	1.9	26	84	16	66	31	22	0	45	1.53
46159--46199	16	2.6	16	96	0	73	26	19	4	48	1.69
51323--51354	16	2.0	16	100	0	64	37	6	18	37	1.76
56078--56113	2	18.0	2	100	0	72	50	50	0	0	1.00
58252--58286	18	1.9	18	88	0	52	14	25	0	60	1.35
58799--58824	2	13.0	2	100	0	52	50	0	0	50	1.00
59497--59521	13	1.9	13	100	0	50	72	0	8	20	1.10
59990--60057	33	2.1	33	94	0	118	45	10	11	32	1.74
60192--60262	17	4.2	17	82	7	81	35	0	5	59	1.21
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
60204--60272	17	4.1	16	78	12	59	39	0	5	55	1.24
62039--62202	30	5.5	29	69	17	113	35	25	3	35	1.72
62040--62289	59	4.3	59	86	5	287	35	24	4	35	1.75
62040--62303	29	9.0	29	70	13	164	34	25	4	35	1.77
62187--62354	28	5.8	29	70	12	121	32	25	6	35	1.82
62040--62348	59	5.3	56	83	7	257	34	25	4	35	1.77
62040--62348	118	2.6	118	84	5	360	34	25	4	35	1.77
62306--62365	28	2.1	28	81	0	66	35	21	10	33	1.87
63207--63236	3	10.0	3	100	0	60	33	0	0	66	0.92
63269--63323	29	2.0	28	89	7	85	60	0	9	30	1.28
67852--67891	17	2.4	17	86	0	53	20	52	12	15	1.74
68999--69062	26	2.5	26	85	10	78	21	14	1	62	1.40
74049--74121	30	2.4	29	76	10	76	57	4	2	35	1.32
83617--83660	17	2.4	18	85	11	63	31	0	0	68	0.90
90952--91050	49	2.0	49	98	0	189	52	9	7	31	1.60
101782--101806	11	2.3	11	100	0	50	92	0	0	8	0.40
110644--110674	2	15.5	2	100	0	62	48	0	0	51	1.00
111071--111136	35	1.9	35	82	11	84	43	7	0	48	1.31
116447--116503	31	1.9	29	89	10	89	56	3	3	36	1.34
123831--123874	18	2.5	18	82	14	56	43	0	0	56	0.99
123827--123874	15	3.2	15	82	5	53	45	0	0	54	0.99
137356--138317	74	13.1	74	91	2	1470	27	8	26	36	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
137356--138317	295	3.3	295	90	2	1499	27	8	26	36	1.86
137356--138307	369	2.6	369	92	1	1590	28	8	26	36	1.86
140069--140333	115	2.3	117	90	5	405	30	9	9	51	1.65
146952--146999	19	2.5	19	93	0	87	39	2	0	58	1.10
147493--147519	14	1.9	14	100	0	54	14	0	3	81	0.82
147489--147526	19	2.0	19	85	10	51	15	0	7	76	1.01
148803--148866	13	4.9	13	81	7	76	35	6	20	37	1.78
153177--153220	22	2.0	22	90	0	70	29	13	13	43	1.83
154972--155002	2	15.5	2	93	0	53	51	3	0	45	1.17
159846--159895	21	2.4	20	81	15	57	70	4	0	26	1.05
167423--167484	30	2.1	31	87	6	92	50	1	0	48	1.10
167427--167502	30	2.3	32	78	17	84	51	1	0	47	1.09
169644--169683	3	13.3	3	100	0	80	67	0	0	32	0.91
172230--172267	18	2.0	20	90	10	62	23	42	13	21	1.88
175671--175709	4	9.8	4	88	0	60	25	2	25	46	1.66
192414--192520	31	3.2	31	67	21	90	39	9	4	46	1.57
192400--192541	69	2.1	69	100	0	284	39	9	5	45	1.61
193358--193399	21	1.9	22	85	9	59	38	7	0	54	1.28
193823--193977	77	2.0	78	96	1	285	47	8	4	40	1.54
201863--201948	25	3.3	25	68	17	75	45	0	5	48	1.26
201850--201963	54	2.1	55	93	1	194	41	0	6	51	1.33
201867--201953	30	3.1	29	71	19	85	45	0	5	48	1.26
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
205185--205235	24	2.1	25	88	3	77	58	5	1	33	1.33
205447--205481	3	11.7	3	100	0	70	34	31	0	34	1.58
205449--205512	12	5.3	12	84	0	65	25	28	7	39	1.83
208628--208756	23	5.5	22	84	5	123	11	22	21	44	1.84
208651--208755	46	2.2	47	84	5	140	12	20	21	44	1.84
208654--208803	69	2.1	69	84	11	191	12	22	20	45	1.84
209613--209637	11	2.3	11	100	0	50	24	52	0	24	1.48
212286--212320	16	2.2	16	89	0	52	25	2	0	71	1.00
214811--214860	22	2.3	23	75	6	59	46	4	2	48	1.32
217212--217265	21	2.5	21	84	6	63	68	24	1	5	1.21
224386--224413	2	14.0	2	100	0	56	50	0	0	50	1.00
244198--244331	62	2.1	61	81	11	148	27	7	7	57	1.53
244293--244351	31	1.9	31	86	6	84	33	8	3	54	1.48
247049--247109	27	2.3	27	97	0	113	44	0	27	27	1.55
253622--253671	18	2.9	17	85	11	66	68	8	6	18	1.36
257957--258030	32	2.3	33	79	9	89	25	5	6	62	1.42

Tables:   1

The End!