Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NTFQ01015296.1 Kokia drynarioides strain JFW-HI SEQ_130341, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 852674
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 334 characters in sequence are not A, C, G, or T
File 2 of 3
Found at i:348387 original size:9 final size:9
Alignment explanation
Indices: 348347--348380 Score: 50
Period size: 9 Copynumber: 3.8 Consensus size: 9
348337 AAGTCGAGAA
348347 AAAAAAAAG
1 AAAAAAAAG
*
348356 AAAAAAACG
1 AAAAAAAAG
*
348365 AAAAAAAAT
1 AAAAAAAAG
348374 AAAAAAA
1 AAAAAAA
348381 TAAAAAATAT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
9 22 1.00
ACGTcount: A:0.88, C:0.03, G:0.06, T:0.03
Consensus pattern (9 bp):
AAAAAAAAG
Found at i:350012 original size:24 final size:24
Alignment explanation
Indices: 349978--350032 Score: 85
Period size: 23 Copynumber: 2.3 Consensus size: 24
349968 GGAGAGTTCT
*
349978 CAAGAGGAAAAAGAAAAAG-AAAA
1 CAAGAAGAAAAAGAAAAAGAAAAA
*
350001 CAAGAAGAAAAAGAAAATGAAAAA
1 CAAGAAGAAAAAGAAAAAGAAAAA
350025 CAAGAAGA
1 CAAGAAGA
350033 TACCCATACA
Statistics
Matches: 29, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
23 17 0.59
24 12 0.41
ACGTcount: A:0.73, C:0.05, G:0.20, T:0.02
Consensus pattern (24 bp):
CAAGAAGAAAAAGAAAAAGAAAAA
Found at i:356163 original size:152 final size:152
Alignment explanation
Indices: 355962--356242 Score: 553
Period size: 152 Copynumber: 1.8 Consensus size: 152
355952 TCATCTTAAA
355962 GCTTTTTCTTGCCAAGATCTCATTCTTGGAGGGGAAATTAGAGCCATTGAAGGGAGTTGTGGATT
1 GCTTTTTCTTGCCAAGATCTCATTCTTGGAGGGGAAATTAGAGCCATTGAAGGGAGTTGTGGATT
356027 CTTATTGTTTCCAAGGCTTCTTAGGATGTTATCTTCTATTTTCAATCTTTAATCTATCGTTCTAG
66 CTTATTGTTTCCAAGGCTTCTTAGGATGTTATCTTCTATTTTCAATCTTTAATCTATCGTTCTAG
356092 TTTATTTCTTGCTGTTTCCAAG
131 TTTATTTCTTGCTGTTTCCAAG
356114 GCTTTTTCTTGCCAAGATCTCATTCTTGGAGGGGAAATTAGAGCCATTGAAGGGAGTTGTGGATT
1 GCTTTTTCTTGCCAAGATCTCATTCTTGGAGGGGAAATTAGAGCCATTGAAGGGAGTTGTGGATT
*
356179 CTTATTGTTTCCAAGGCTTCTTAGGATGTTATCTTCTATTTTCTATCTTTAATCTATCGTTCTA
66 CTTATTGTTTCCAAGGCTTCTTAGGATGTTATCTTCTATTTTCAATCTTTAATCTATCGTTCTA
356243 TTTTCTATCT
Statistics
Matches: 128, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
152 128 1.00
ACGTcount: A:0.21, C:0.16, G:0.20, T:0.43
Consensus pattern (152 bp):
GCTTTTTCTTGCCAAGATCTCATTCTTGGAGGGGAAATTAGAGCCATTGAAGGGAGTTGTGGATT
CTTATTGTTTCCAAGGCTTCTTAGGATGTTATCTTCTATTTTCAATCTTTAATCTATCGTTCTAG
TTTATTTCTTGCTGTTTCCAAG
Found at i:356241 original size:26 final size:25
Alignment explanation
Indices: 356208--356256 Score: 89
Period size: 26 Copynumber: 1.9 Consensus size: 25
356198 CTTAGGATGT
356208 TATCTTCTATTTTCTATCTTTAATC
1 TATCTTCTATTTTCTATCTTTAATC
356233 TATCGTTCTATTTTCTATCTTTAA
1 TATC-TTCTATTTTCTATCTTTAA
356257 CGTTCTCCTA
Statistics
Matches: 23, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
25 4 0.17
26 19 0.83
ACGTcount: A:0.20, C:0.18, G:0.02, T:0.59
Consensus pattern (25 bp):
TATCTTCTATTTTCTATCTTTAATC
Found at i:358815 original size:80 final size:79
Alignment explanation
Indices: 358721--358877 Score: 242
Period size: 80 Copynumber: 2.0 Consensus size: 79
358711 TCATTAAGGA
* * * * *
358721 GAAATGCCATGCCTTTTCAGCTACATGAGATCCTAATGAAGAGACATGATTCATTGGCTTTCCTA
1 GAAATGCCATGCCTTTTCAACTACATCAGATCCTAATGAAGAGACATGACTCATTAGCTTCCCTA
358786 CAAGAGTTAAAAAC
66 CAAGAGTTAAAAAC
* *
358800 GAAATTGCCATGCCTTTTTAACTACATCAGATCCTAATGAAGAGGCATGACTCATTAGCTTCCCT
1 GAAA-TGCCATGCCTTTTCAACTACATCAGATCCTAATGAAGAGACATGACTCATTAGCTTCCCT
358865 ACAAGAGTTAAAA
65 ACAAGAGTTAAAA
358878 TGAAATTAGT
Statistics
Matches: 70, Mismatches: 7, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
79 4 0.06
80 66 0.94
ACGTcount: A:0.34, C:0.21, G:0.17, T:0.28
Consensus pattern (79 bp):
GAAATGCCATGCCTTTTCAACTACATCAGATCCTAATGAAGAGACATGACTCATTAGCTTCCCTA
CAAGAGTTAAAAAC
Found at i:361661 original size:33 final size:32
Alignment explanation
Indices: 361580--361671 Score: 80
Period size: 33 Copynumber: 2.8 Consensus size: 32
361570 AGAGTGAGGT
*
361580 AACAACAAAAGAAAAAGAGAAAA-ACATGAGAG
1 AACAAAAAAAGAAAAAGA-AAAAGACATGAGAG
*
361612 AATGCAAAAAATAGAAAAAGAAAAAGAGCATGAGGG
1 AA--CAAAAAA-AGAAAAAGAAAAAGA-CATGAGAG
**
361648 AA-AAGAAAAAGAAAGCGAAAAAGA
1 AACAA-AAAAAGAAAAAGAAAAAGA
361672 AAAAAATTAA
Statistics
Matches: 50, Mismatches: 4, Indels: 11
0.77 0.06 0.17
Matches are distributed among these distances:
32 2 0.04
33 15 0.30
34 14 0.28
35 10 0.20
36 9 0.18
ACGTcount: A:0.67, C:0.07, G:0.22, T:0.04
Consensus pattern (32 bp):
AACAAAAAAAGAAAAAGAAAAAGACATGAGAG
Found at i:363927 original size:6 final size:6
Alignment explanation
Indices: 363916--363958 Score: 86
Period size: 6 Copynumber: 7.2 Consensus size: 6
363906 GGACCTATTT
363916 CGAGGG CGAGGG CGAGGG CGAGGG CGAGGG CGAGGG CGAGGG C
1 CGAGGG CGAGGG CGAGGG CGAGGG CGAGGG CGAGGG CGAGGG C
363959 TAGAAAGCTT
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 37 1.00
ACGTcount: A:0.16, C:0.19, G:0.65, T:0.00
Consensus pattern (6 bp):
CGAGGG
Found at i:364232 original size:48 final size:48
Alignment explanation
Indices: 364172--364341 Score: 259
Period size: 48 Copynumber: 3.5 Consensus size: 48
364162 CATTAAGGTT
* * * * *
364172 TTTTTTTTGTTAAATGCATCTTTGTTTAATAATTTACATCATTAAGTG
1 TTTTGTTTGTTAAATGCATCTTTGTTTAGTAATATGCATCATTAACTG
* * *
364220 TTTTGTTTGTTAAATGCATCTTTGTTTAGTAATCTGCATTATTAACTA
1 TTTTGTTTGTTAAATGCATCTTTGTTTAGTAATATGCATCATTAACTG
*
364268 TTTTGTTTGTTAAATGCATCTTTGTTTAGTAATATGCATTATTAACTG
1 TTTTGTTTGTTAAATGCATCTTTGTTTAGTAATATGCATCATTAACTG
364316 TTTTGTTTGTTAAATGCATCTTTGTT
1 TTTTGTTTGTTAAATGCATCTTTGTT
364342 AAATGCCTTG
Statistics
Matches: 113, Mismatches: 9, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
48 113 1.00
ACGTcount: A:0.24, C:0.09, G:0.13, T:0.54
Consensus pattern (48 bp):
TTTTGTTTGTTAAATGCATCTTTGTTTAGTAATATGCATCATTAACTG
Found at i:364885 original size:80 final size:80
Alignment explanation
Indices: 364788--364937 Score: 223
Period size: 80 Copynumber: 1.9 Consensus size: 80
364778 GGAGAAATGT
* * *
364788 CATGCCTTTTCAGCTACATGAGATCCTAATGAAGAGAGATGACTCATT-GACTT-TCCTACAAGA
1 CATGCCTTTTCAACTACATCAGATCCTAATGAAGAGACATGACTCATTAG-CTTCT-CTACAAGA
364851 GTTAAAAACGAAATTGA
64 GTTAAAAACGAAATTGA
* *
364868 CATGCCTTTTTAACTACATCAGATCCTAATGAAGAGACATGGCTCATTAGCTTCTCTACAAGAGT
1 CATGCCTTTTCAACTACATCAGATCCTAATGAAGAGACATGACTCATTAGCTTCTCTACAAGAGT
364933 TAAAA
66 TAAAA
364938 TGAAATTAGT
Statistics
Matches: 63, Mismatches: 5, Indels: 4
0.88 0.07 0.06
Matches are distributed among these distances:
80 61 0.97
81 2 0.03
ACGTcount: A:0.35, C:0.20, G:0.16, T:0.29
Consensus pattern (80 bp):
CATGCCTTTTCAACTACATCAGATCCTAATGAAGAGACATGACTCATTAGCTTCTCTACAAGAGT
TAAAAACGAAATTGA
Found at i:365550 original size:50 final size:50
Alignment explanation
Indices: 365452--365594 Score: 178
Period size: 50 Copynumber: 2.8 Consensus size: 50
365442 TGGATTACTA
* *
365452 AATGCATGACTTGATTTAATGATGCAAACTTTAACTAACATGGGAGTTACAT
1 AATGCATGACATGATTT-ATGATGCAAA-TTTAACTAACATGGAAGTTACAT
* * * *
365504 AATGCATGACAGGATTTATGATGCATATTTAACTAACATGTAAGTTACTT
1 AATGCATGACATGATTTATGATGCAAATTTAACTAACATGGAAGTTACAT
* * *
365554 AATGCATGTCATTATTTATGATGCAAACTTAACTAATCATG
1 AATGCATGACATGATTTATGATGCAAATTTAACTAA-CATG
365595 AGAGTTAATG
Statistics
Matches: 79, Mismatches: 11, Indels: 3
0.85 0.12 0.03
Matches are distributed among these distances:
50 51 0.65
51 13 0.16
52 15 0.19
ACGTcount: A:0.36, C:0.13, G:0.15, T:0.35
Consensus pattern (50 bp):
AATGCATGACATGATTTATGATGCAAATTTAACTAACATGGAAGTTACAT
Found at i:365687 original size:33 final size:34
Alignment explanation
Indices: 365636--365700 Score: 96
Period size: 33 Copynumber: 1.9 Consensus size: 34
365626 ACTTTATTAA
* *
365636 ATGTAGATCACATAATGCATGTCATATTTAAAAG
1 ATGTAGATCACATAATGCATGACATAATTAAAAG
*
365670 ATGTAGATTA-ATAATGCATGACATAATTAAA
1 ATGTAGATCACATAATGCATGACATAATTAAA
365701 TCACAATCTT
Statistics
Matches: 28, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
33 19 0.68
34 9 0.32
ACGTcount: A:0.45, C:0.09, G:0.14, T:0.32
Consensus pattern (34 bp):
ATGTAGATCACATAATGCATGACATAATTAAAAG
Found at i:365827 original size:17 final size:17
Alignment explanation
Indices: 365796--365828 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
365786 CAAACACTTA
365796 TTAAACTAAAATAAAAC
1 TTAAACTAAAATAAAAC
365813 TTAAA-TAAAATTAAAA
1 TTAAACTAAAA-TAAAA
365829 GTCTATAAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 5 0.33
17 10 0.67
ACGTcount: A:0.67, C:0.06, G:0.00, T:0.27
Consensus pattern (17 bp):
TTAAACTAAAATAAAAC
Found at i:367211 original size:18 final size:17
Alignment explanation
Indices: 367190--367223 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
367180 TCACAATTTC
367190 TTTCAGTCTCTCTTTCTT
1 TTTCAGTCTCT-TTTCTT
*
367208 TTTCATTCTCTTTTCT
1 TTTCAGTCTCTTTTCT
367224 CACAACTTTT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 5 0.33
18 10 0.67
ACGTcount: A:0.06, C:0.26, G:0.03, T:0.65
Consensus pattern (17 bp):
TTTCAGTCTCTTTTCTT
Found at i:367286 original size:20 final size:21
Alignment explanation
Indices: 367252--367302 Score: 59
Period size: 20 Copynumber: 2.4 Consensus size: 21
367242 CTCTTTTTTT
367252 ATTTCCTTTTCTTCTTCCCTC
1 ATTTCCTTTTCTTCTTCCCTC
* *
367273 ATTT-CTTTTTTTCTTCTCTC
1 ATTTCCTTTTCTTCTTCCCTC
*
367293 ACTCTCCTTT
1 A-TTTCCTTT
367303 ATTTTTCTTT
Statistics
Matches: 25, Mismatches: 3, Indels: 3
0.81 0.10 0.10
Matches are distributed among these distances:
20 15 0.60
21 6 0.24
22 4 0.16
ACGTcount: A:0.06, C:0.33, G:0.00, T:0.61
Consensus pattern (21 bp):
ATTTCCTTTTCTTCTTCCCTC
Found at i:367307 original size:26 final size:23
Alignment explanation
Indices: 367249--367308 Score: 57
Period size: 26 Copynumber: 2.4 Consensus size: 23
367239 ACACTCTTTT
367249 TTTATTTCCTTTTCTTCTTCCCTCA
1 TTTATTT--TTTTCTTCTTCCCTCA
* *
367274 TTTCTTTTTTTCTTCTCTCACTCTCC
1 TTTATTTTTTTCTTCT-TC-C-CTCA
367300 TTTATTTTT
1 TTTATTTTT
367309 CTTTCATTTT
Statistics
Matches: 29, Mismatches: 3, Indels: 5
0.78 0.08 0.14
Matches are distributed among these distances:
23 9 0.31
24 2 0.07
25 7 0.24
26 11 0.38
ACGTcount: A:0.07, C:0.28, G:0.00, T:0.65
Consensus pattern (23 bp):
TTTATTTTTTTCTTCTTCCCTCA
Found at i:368325 original size:19 final size:19
Alignment explanation
Indices: 368275--368331 Score: 62
Period size: 19 Copynumber: 2.9 Consensus size: 19
368265 TTTTTTTATA
*
368275 TTTTTTCAATATTTCG-ATT
1 TTTTTTCACT-TTTCGAATT
*
368294 TTTTTTCTTCTTTTCGAATT
1 TTTTTTC-ACTTTTCGAATT
368314 TTTTTTCACTTTGTCGAA
1 TTTTTTCACTTT-TCGAA
368332 ACTCGAAATA
Statistics
Matches: 32, Mismatches: 3, Indels: 5
0.80 0.08 0.12
Matches are distributed among these distances:
19 16 0.50
20 16 0.50
ACGTcount: A:0.16, C:0.14, G:0.07, T:0.63
Consensus pattern (19 bp):
TTTTTTCACTTTTCGAATT
Found at i:368330 original size:20 final size:20
Alignment explanation
Indices: 368286--368331 Score: 60
Period size: 20 Copynumber: 2.4 Consensus size: 20
368276 TTTTTCAATA
*
368286 TTTCG-ATTTTTTTTCTTCT
1 TTTCGAATTTTTTTTCTACT
368305 TTTCGAATTTTTTTTC-ACT
1 TTTCGAATTTTTTTTCTACT
368324 TTGTCGAA
1 TT-TCGAA
368332 ACTCGAAATA
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
19 9 0.38
20 15 0.62
ACGTcount: A:0.13, C:0.15, G:0.09, T:0.63
Consensus pattern (20 bp):
TTTCGAATTTTTTTTCTACT
Found at i:369628 original size:50 final size:50
Alignment explanation
Indices: 369516--369658 Score: 160
Period size: 50 Copynumber: 2.8 Consensus size: 50
369506 GAACTAATGG
* * * *
369516 ATTACTAAATGCATGACTTGATTTAATGATGTAAACTTTAACTAACATGGGA
1 ATTACTTAATGCATGACATGATTT-ATGATGCAAA-TTTAACTAACATGGAA
* * * * *
369568 GTTACATAATGCATGACAGGATTTATGATGCATATTTAACTAACATGTAA
1 ATTACTTAATGCATGACATGATTTATGATGCAAATTTAACTAACATGGAA
* * *
369618 ATTACTTAATGCATGTCATTATTTATGATGCAAACTTAACT
1 ATTACTTAATGCATGACATGATTTATGATGCAAATTTAACT
369659 GATCATGAGA
Statistics
Matches: 75, Mismatches: 16, Indels: 2
0.81 0.17 0.02
Matches are distributed among these distances:
50 48 0.64
51 8 0.11
52 19 0.25
ACGTcount: A:0.37, C:0.13, G:0.14, T:0.36
Consensus pattern (50 bp):
ATTACTTAATGCATGACATGATTTATGATGCAAATTTAACTAACATGGAA
Found at i:370864 original size:30 final size:30
Alignment explanation
Indices: 370795--370864 Score: 77
Period size: 30 Copynumber: 2.3 Consensus size: 30
370785 TCTCAATGTG
* * * *
370795 AGTGCTCACAACATGAGTGTTCACAGCTCC
1 AGTGCTCGCAACATGAGTGATCACAACACC
* *
370825 AATGTTCGCAACATGAGTGATCACAACACC
1 AGTGCTCGCAACATGAGTGATCACAACACC
*
370855 GGTGCTCGCA
1 AGTGCTCGCA
370865 TCTTTCAAGC
Statistics
Matches: 31, Mismatches: 9, Indels: 0
0.77 0.22 0.00
Matches are distributed among these distances:
30 31 1.00
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.21
Consensus pattern (30 bp):
AGTGCTCGCAACATGAGTGATCACAACACC
Found at i:371557 original size:216 final size:216
Alignment explanation
Indices: 370951--374757 Score: 2215
Period size: 216 Copynumber: 17.4 Consensus size: 216
370941 GAATTTCATT
* * * * * * * * *
370951 CAAGAGCCAAGAGACAAACAATTCT--TATATA-AAGTTTTTAATCCACAGACTAAAAAACTTAT
1 CAAGAACCAAGAGAGAAACAATTCTCACATAAATAAGTTTTTAATTCAAAGAC--CAAAAGTTGT
* * * * *
371013 TTACAAACTAACAAACTATTTAGACCAAATGATGCGATTTTTA-GAGCATGAAATGTTC-AGAAA
64 TTACAAAATGACAAACTATTTAGACCAAATGATGCGA-TTTCACAAGCATGGAATGTTCGAGAAA
* * * ** **
371076 GTTGCTCGAATGAATGGATCATCTTGAATACTTTAAACAACTGAAGTTATAAAAGAAC-TCAAAA
128 -TTGCTCAAAGGAATGGATCGTCTTGAATACTTTAAGGAACTGAAGTTATAAAAGAACTTGTAAA
* * *
371140 AGTTAGACAAGTTCGAAATTTCGTC
192 AGTTTGACAAGTTCGGAAGTTCGTC
* * * * **
371165 CAAGAACCAAGAGACAAACAATTCTCACATAAATGAGTTTTTAATCCAAAGACCAAAAAACTAAT
1 CAAGAACCAAGAGAGAAACAATTCTCACATAAATAAGTTTTTAATTCAAAGACC--AAAAGTTGT
* * * * * *
371230 TTACAAAATGACAAACTATTTAGACCAGATGATGTGATTTCCCAAGCATGGAATGTACAAAAAAT
64 TTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCACAAGCATGGAATGTTCGAGAAAT
* * *
371295 TGGTCGAAGGAGTGGATCGTCTTGAATACTTTAAGGAA-TCGAAGTTATAAAAGAACTTGTAAAA
129 TGCTCAAAGGAATGGATCGTCTTGAATACTTTAAGGAACT-GAAGTTATAAAAGAACTTGTAAAA
*
371359 GTTTGACAAGTTTGGAAGTTCGTC
193 GTTTGACAAGTTCGGAAGTTCGTC
* *
371383 CAAGAACCAACAGAGAAACAATTCTCACATAAATAAGTTTTTAATTCAAAGACCAAAAGTTATTT
1 CAAGAACCAAGAGAGAAACAATTCTCACATAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTT
* *
371448 ACAAAATGA-AGAACTATTTAGACCAAATGATGCAATTTCACAAGCATGGAATGTTCGTGAAATT
66 ACAAAATGACA-AACTATTTAGACCAAATGATGCGATTTCACAAGCATGGAATGTTCGAGAAATT
* *
371512 GCTCAAAGGAATGGATCGTCTTGAATACTTTAAGGAACTGAAGTTATAAAACAACTCGTAAAAG-
130 GCTCAAAGGAATGGATCGTCTTGAATACTTTAAGGAACTGAAGTTATAAAAGAACTTGTAAAAGT
* * * * *
371576 TT-AGAGGTTCGAAATTTTGTC
195 TTGACAAGTTCGGAAGTTCGTC
* * * * **
371597 CAAGAACCAAGAGACAAACAATTCTCACGTAAATAAGTTCTTTGAATTCAAACACAAAAACCTGT
1 CAAGAACCAAGAGAGAAACAATTCTCACATAAATAAGTT-TTT-AATTCAAAGACCAAAAGTTGT
*
371662 TTACAAAATGA-ACAACTATTTAGACC-AA--AT--GA----ACAA-C-T----CG---GA-AAA
64 TTACAAAATGACA-AACTATTTAGACCAAATGATGCGATTTCACAAGCATGGAATGTTCGAGAAA
** * * * * * *
371707 TTGCTTGAAGGAGTGGATCATCTTGAATACTTTAAGGGACCGAAGTTGTAAAAGAACTCGTAAAA
128 TTGCTCAAAGGAATGGATCGTCTTGAATACTTTAAGGAACTGAAGTTATAAAAGAACTTGTAAAA
* *
371772 GTTTGACAAGTTCAGAAGTTCATC
193 GTTTGACAAGTTCGGAAGTTCGTC
* ** * * *
371796 CAAGAACCAATAGAGAAACAATTCTCATGTAAGTAAGTTTTTTATTAAAAGACCAAAAGTTGTTT
1 CAAGAACCAAGAGAGAAACAATTCTCACATAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTT
* * * * * * * * *
371861 AGAAAATGACAAACTATTTACACCAAAATGATGTGATTTCCCGAGCTTGAAATGTTCAAAAAATT
66 ACAAAATGACAAACTATTTAGACC-AAATGATGCGATTTCACAAGCATGGAATGTTCGAGAAATT
* * ** *
371926 TCTCAAATGAATGGATCGTCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAAC-TCTAAAAGT
130 GCTCAAAGGAATGGATCGTCTTGAATACTTTAAGGAACTGAAGTTATAAAAGAACTTGTAAAAG-
* *
371990 TTTG-CAAATTCGAAAGTTCGTC
194 TTTGACAAGTTCGGAAGTTCGTC
**
372012 CAAGAACCAAGAGAGAAACAATTCTCACATAAATAAGTTTTTAATTCAAAGATGAAAAGTTGTTT
1 CAAGAACCAAGAGAGAAACAATTCTCACATAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTT
* * * * *
372077 ACAAACTGACAAACTATTTAGGCCAAATGATGCGGTTTC-CTGAGCATGGAATGTT-TAGAAAAT
66 ACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCAC-AAGCATGGAATGTTCGAG-AAAT
* * * * * *
372140 TGCTCGAAGGCATGGATTGTCTTGAATACTTTAAGGAATTGAAGTCATAAAAGAACTCGTAAAAG
129 TGCTCAAAGGAATGGATCGTCTTGAATACTTTAAGGAACTGAAGTTATAAAAGAACTTGTAAAAG
* * * *
372205 TTTGACTAGTTTGGGAGATCGTC
194 TTTGACAAGTTCGGAAGTTCGTC
* * * *
372228 CAAAAACCAAGAGAGAAATAATTCTCACTTCAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTT
1 CAAGAACCAAGAGAGAAACAATTCTCACATAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTT
* * *** * * *** * * * *
372293 ACAAAATGACAAACTACTCACTTCAATAAGTTTTTAATTCA-AAGACCA--AAAGTTGTT-TACA
66 ACAAAATGACAAACTATTTAGACCAA-ATGATGCGATTTCACAAG--CATGGAA--TGTTCGAGA
* * ** * * **** * ** * ** ** **
372354 AAATG-ACAAACTATTTAGA-CAAAATG-ATGCGATTTCCCGAGCAGGGAATGTTCGGAAAATTA
126 AATTGCTCAAAGGA-ATGGATCGTCTTGAATAC--TTT-AAG-GAACTGAA-GTT-ATAAAAGAA
* * ** *
372416 C-TCTAATGAA--TGGATCATCTT--GAA-TACTGT-
184 CTTGTAA--AAGTTTGA-CAAGTTCGGAAGTTC-GTC
* * * * * ** * *** *
372446 -AAGGAACCATAGTTATA-AAAGAACTCTAAAATTTGGACAAGTTCGGAGATCGTCCAAGAACCA
1 CAA-GAACCA-AG--AGAGAAACAATTCTCACA--TAAATAAGTTTTTA-AT--TCAAAG-ACCA
*** * ** *
372509 AGAGAGAAACAATTCTCACGTAAAT-A-AGTCTATAATTGAAAGACCAAATG-T-TG-TTT-ACA
56 A-A-AG---TTGTT-T-AC-AAAATGACAAACTAT--TT---AGACCAAATGATGCGATTTCACA
* * * * * ** * **
372568 A-AATGAAAAACTATTTAC-ACCAAATTATG-TGATTTCCCGAGCATGGAAT-GTTCGGGAAATA
108 AGCATG--GAA-T-GTT-CGA-GAAA-T-TGCTCA----AAG-GAATGG-ATCG-TCTTG-AATA
* * * * ** *** **
372629 GCTTGAAGGAA-TGGATCGTCT-T-GAA-TACTT-TAAGAA-ACTG--AAGTTATAAAAAGAACC
157 -CTTTAAGGAACT-GA-AGT-TATAAAAGAACTTGTAA-AAGTTTGACAAG-T-TCGGAAG-TTC
* *
372686 TATA
214 -GTC
* ** * * * * ***** * *
372690 AAAGTTAGA-CAAG-TTGAAA-ATTTCGTCAAAGAACTAAGAGACAGACAATTCTCACGTA--AA
1 CAAG--A-ACCAAGAGAGAAACAATTC-TCACATAAAT-A-AG-TTTTTAATTC-AAAG-ACCAA
* *
372750 TAAGTT-TTTAATCCAAA-GACCAAAAAACTTATTTACAAAATGATAAACTATTTAGACAAAATT
57 -AAGTTGTTT-A-CAAAATGA-C---AAAC-TATTT-----A-G----AC--------C-AAATG
** * * * *
372813 ATGCGATTTTTCGAGCATGGAATGGTCGAAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTT
95 ATGCGATTTCACAAGCATGGAATGTTCGAGAAATTGCTCAAAGGAATGGATCGTCTTGAATACTT
* * * * * *
372878 TAAAGAA-TAGAAGTTATACAAGAACTTTTAAAAGTTTGACTACTTCGAAAGTTCGTC
160 TAAGGAACT-GAAGTTATAAAAGAACTTGTAAAAGTTTGACAAGTTCGGAAGTTCGTC
* *
372935 CAAGAACCAAGAGAGATACAATTCTCACATAAATAAGTTCTTTTAATTCAAAGACCAAAACTTGT
1 CAAGAACCAAGAGAGAAACAATTCTCACATAAATAAG-T-TTTTAATTCAAAGACCAAAAGTTGT
* * * * * *
373000 TTACAAAACGACAAAC-ATTTTAGATCAAATGATGCGATTTCTCGAGCATGGAATGTTCAAAAAA
64 TTACAAAATGACAAACTA-TTTAGACCAAATGATGCGATTTCACAAGCATGGAATGTTCGAGAAA
* * * *
373064 TTACTCAAAGGAATGGATCATCTCGAATA-TATTAAGGAA-TCAAAGTTATAAAAGAACTCT-TA
128 TTGCTCAAAGGAATGGATCGTCTTGAATACT-TTAAGGAACT-GAAGTTATAAAAGAACT-TGTA
* * *
373126 ACAGTTTGACAAGTTCGGATGTTAGTC
190 AAAGTTTGACAAGTTCGGAAGTTCGTC
* * * *
373153 CAAGAACCAAGAGAGAAAACAATTCTCACGTTAATAAGTTTTTAATTAAAAGACCAAAACTTGTT
1 CAAGAACCAAGAGAG-AAACAATTCTCACATAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTT
* * * ** * * * *
373218 TACAAAATGACAAACAATTAAGACCAAATGATGCAATTTC-CTGTGCATGGACTATTTGAAAAAT
65 TACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCAC-AAGCATGGAATGTTCGAGAAAT
* * * *
373282 TGCTCTAATGAGTGGATCGTCTTGAATA-TCTTAAGGAA-TCGAAGTTATAAAAGAACCCT-TAA
129 TGCTCAAAGGAATGGATCGTCTTGAATACT-TTAAGGAACT-GAAGTTATAAAAGAA-CTTGTAA
* * * *
373344 ATGTTTGACAAGTTTGGATGTTCATC
191 AAGTTTGACAAGTTCGGAAGTTCGTC
* * * *
373370 CAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTAAAAGATCAAAAATTGTTT
1 CAAGAACCAAGAGAGAAACAATTCTCACATAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTT
* * * * * *
373435 ACAAAATGACAAACAATTCAGACCAAATGATGCAATTTC-CTGAGCATAGAATGTTCGAAAAATT
66 ACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCAC-AAGCATGGAATGTTCGAGAAATT
* * * ** *
373499 GCTCTAAGGAGTGGATCATCAAGAATACTTTAAGGAACTGAAGTTATAAAAGAAC-TCTAAAAGT
130 GCTCAAAGGAATGGATCGTCTTGAATACTTTAAGGAACTGAAGTTATAAAAGAACTTGTAAAAGT
* * * *
373563 TTGACAAGTTTGGGAGATCATC
195 TTGACAAGTTCGGAAGTTCGTC
* * *
373585 TAAGAACCAAGAGAGAAACAATTCTCA-AGTAAATAAGTTTTTAATTCAAAGTCTAAAAGTTGTT
1 CAAGAACCAAGAGAGAAACAATTCTCACA-TAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTT
* * * *
373649 TACGAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATTTTC-AGAAAAT
65 TACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCACAAGCATGGAATGTTCGAG-AAAT
* * * * *
373713 TGCTCAAAAGAATGGATTGTCTTGAATACTTTATGGAACCGAAGTTATAAAAGAACTCGTAAAAG
129 TGCTCAAAGGAATGGATCGTCTTGAATACTTTAAGGAACTGAAGTTATAAAAGAACTTGTAAAAG
* *
373778 TTTGAAAAGTTCAGG-AGATCGTC
194 TTTGACAAGTTC-GGAAGTTCGTC
* * * * * *
373801 CAAGAACCTAGAGAGAAGCAATTCTAACGTAAATAAGTTTTTAATTCAAAGACAAAAACTTGTTT
1 CAAGAACCAAGAGAGAAACAATTCTCACATAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTT
* * * * *
373866 AAAAAATGACAAACTATTTAGACCTAATGATGCGATTTCCCCAA-CAAGAAATGTTCG-GAGAAT
66 ACAAAATGACAAACTATTTAGACCAAATGATGCGATTT-CACAAGCATGGAATGTTCGAGA-AAT
* * * *** * *
373929 TGTTCTAATGAATGGATCGTCAAAAATACTTTAAGGAAC-GAAAGTTATTAAAGAAC-TCTAAAA
129 TGCTCAAAGGAATGGATCGTCTTGAATACTTTAAGGAACTG-AAGTTATAAAAGAACTTGTAAAA
* * *
373992 GTTTCACAAGTTCGGAAGATCATC
193 GTTTGACAAGTTCGGAAGTTCGTC
* * *
374016 CAAG-ACCAAGAGAGACATAATTCTCA-AGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTATT
1 CAAGAACCAAGAGAGAAACAATTCTCACA-TAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTT
* * * * *
374079 TACAAAATGAAAAACTATTTAGACCAAATGATGTGATTTC-CTAAGCATGGGATG-CCTAGAAAA
65 TACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCAC-AAGCATGGAATGTTCGAG-AAA
* * * * *
374142 TTGCTCGAAGGAATGGATTGTCTTGAAAACTTTAAGGAACCGAAGTTATAAAAGAACTCGT-AAA
128 TTGCTCAAAGGAATGGATCGTCTTGAATACTTTAAGGAACTGAAGTTATAAAAGAACTTGTAAAA
* * * * * * *
374206 GTTAGACAGGTTTGAAATTTCATT
193 GTTTGACAAGTTCGGAAGTTCGTC
* ** * * *
374230 CAAGAACCAAGAGACAAACAATTCTCATGTAAATAAGTTCTTTGAATTCAAACACAAAAACTTGT
1 CAAGAACCAAGAGAGAAACAATTCTCACATAAATAAGTT-TTT-AATTCAAAGACCAAAAGTTGT
** * * * *
374295 TTATGAAATGACAAACTATTTAGACCATATGATGCGATTTCTCGAGCATGGAATGTTCGAAAAAT
64 TTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCACAAGCATGGAATGTTCGAGAAAT
* * * * **
374360 TGCTCAAAGGAGTGGATCGTCTTGAATACTTCAAGGAA-TCGAAGTTATACATGAACTCATAAAA
129 TGCTCAAAGGAATGGATCGTCTTGAATACTTTAAGGAACT-GAAGTTATAAAAGAACTTGTAAAA
* * *** * *
374424 GTTAGACAGGTTTTAAATTTTGTC
193 GTTTGACAAGTTCGGAAGTTCGTC
* * * *
374448 CAAGAACCAAGAGACAAACAATTCTCACATAAATAAGTTTTTAATCCAAAGACCAAAAAACTTAT
1 CAAGAACCAAGAGAGAAACAATTCTCACATAAATAAGTTTTTAATTCAAAGACC--AAAAGTTGT
* * *
374513 TCACAAAATTACAAACTATTTAGACC-AA--ATGCGATTTTC-CAAGCATGGAATGTT-TAGAAA
64 TTACAAAATGACAAACTATTTAGACCAAATGATGCGA-TTTCACAAGCATGGAATGTTCGAG-AA
* ** ** *
374573 ATTGCTCGAAGGAATGGATTATCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAACTCGTAAA
127 ATTGCTCAAAGGAATGGATCGTCTTGAATACTTTAAGGAACTGAAGTTATAAAAGAACTTGTAAA
* *
374638 AGTTTGACAAGTTCGGGAGATCGTC
192 AGTTTGACAAGTTCGGAAGTTCGTC
**
374663 CAAGAACCAAGAGAGAAACAATTCTCATGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTT
1 CAAGAACCAAGAGAGAAACAATTCTCACATAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTT
*
374728 ACAAAATGACAAACTATATAGACCAAATGA
66 ACAAAATGACAAACTATTTAGACCAAATGA
374758 AAAACTATTT
Statistics
Matches: 2808, Mismatches: 569, Indels: 430
0.74 0.15 0.11
Matches are distributed among these distances:
197 98 0.03
198 7 0.00
199 49 0.02
201 3 0.00
203 2 0.00
205 1 0.00
206 1 0.00
207 6 0.00
208 1 0.00
209 1 0.00
211 1 0.00
212 1 0.00
213 37 0.01
214 244 0.09
215 476 0.17
216 715 0.25
217 487 0.17
218 310 0.11
219 32 0.01
220 17 0.01
221 11 0.00
222 10 0.00
223 2 0.00
225 5 0.00
226 5 0.00
227 2 0.00
228 2 0.00
230 1 0.00
231 3 0.00
232 7 0.00
233 8 0.00
234 17 0.01
235 5 0.00
236 7 0.00
237 8 0.00
238 10 0.00
239 8 0.00
240 16 0.01
241 14 0.00
242 23 0.01
243 38 0.01
244 18 0.01
245 29 0.01
246 16 0.01
247 17 0.01
248 7 0.00
249 2 0.00
252 2 0.00
253 3 0.00
254 8 0.00
255 3 0.00
256 2 0.00
257 5 0.00
258 2 0.00
259 3 0.00
ACGTcount: A:0.41, C:0.15, G:0.16, T:0.28
Consensus pattern (216 bp):
CAAGAACCAAGAGAGAAACAATTCTCACATAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTT
ACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCACAAGCATGGAATGTTCGAGAAATTG
CTCAAAGGAATGGATCGTCTTGAATACTTTAAGGAACTGAAGTTATAAAAGAACTTGTAAAAGTT
TGACAAGTTCGGAAGTTCGTC
Found at i:371869 original size:197 final size:197
Alignment explanation
Indices: 371507--372106 Score: 503
Period size: 197 Copynumber: 2.9 Consensus size: 197
371497 AATGTTCGTG
* *
371507 AAATTGCTCAAAGGAATGGATCGTCTTGAATACTTTAAGGAACTGAAGTTATAAAACAACTCGTA
1 AAATTGCTCAAAGGAATGGATCATCTTGAATACTTTAAGGAACCGAAGTTATAAAACAACTCGTA
* * * **
371572 AAAGTTAGAGGTTCGAAATTTTGTCCAAGAACCAAGAGACAAACAATTCTCACGTAAATAAGTTC
66 AAAGTTACAAGTTCGAAAGTTCATCCAAGAACCAAGAGACAAACAATTCTCACGTAAATAAGTTC
* *
371637 TTTGAATTCAAACACAAAAACCTGTTTACAAAATGA-ACAACTATTTAGACCAAATGAACAACTC
131 TTTGAATTAAAACACAAAAACCTGTTTACAAAATGACA-AACTATTTACACCAAATGAACAACTC
371701 GGA
195 GGA
** * * * *
371704 AAATTGCTTGAAGGAGTGGATCATCTTGAATACTTTAAGGGACCGAAGTTGTAAAAGAACTCGTA
1 AAATTGCTCAAAGGAATGGATCATCTTGAATACTTTAAGGAACCGAAGTTATAAAACAACTCGTA
* * * *
371769 AAAGTTTGACAAGTTC-AGAAGTTCATCCAAGAACCAATAGAGAAACAATTCTCATGTAAGTAAG
66 AAAG-TT-ACAAGTTCGA-AAGTTCATCCAAGAACCAAGAGACAAACAATTCTCACGTAAATAAG
* * * ** *
371833 TT-TTT-TATTAAAAGACCAAAAGTTGTTTAGAAAATGACAAACTATTTACACCAAAATGATGTG
128 TTCTTTGAATTAAAACACAAAAACCTGTTTACAAAATGACAAACTATTTACACC-AAATGA----
* *
371896 ATTTCCCGAGCTTGAAATGTTCAAA
188 A-----C-AACTCG----G-----A
* * * * *
371921 AAATTTCTCAAATGAATGGATCGTCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAACTC-TA
1 AAATTGCTCAAAGGAATGGATCATCTTGAATACTTTAAGGAACCGAAGTTATAAAACAACTCGTA
* * * * *
371985 AAAGTTTTGCAAATTCGAAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACATAAATAAGT
66 AAAG--TTACAAGTTCGAAAGTTCATCCAAGAACCAAGAGACAAACAATTCTCACGTAAATAAGT
* * ** ** * **
372050 T-TTT-AATTCAAAGATGAAAAGTTGTTTACAAACTGACAAACTATTTAGGCCAAATGA
129 TCTTTGAATTAAAACACAAAAACCTGTTTACAAAATGACAAACTATTTACACCAAATGA
372107 TGCGGTTTCC
Statistics
Matches: 326, Mismatches: 51, Indels: 34
0.79 0.12 0.08
Matches are distributed among these distances:
197 98 0.30
198 13 0.04
199 47 0.14
202 1 0.00
207 1 0.00
208 4 0.01
212 1 0.00
215 6 0.02
216 97 0.30
217 58 0.18
ACGTcount: A:0.42, C:0.15, G:0.16, T:0.27
Consensus pattern (197 bp):
AAATTGCTCAAAGGAATGGATCATCTTGAATACTTTAAGGAACCGAAGTTATAAAACAACTCGTA
AAAGTTACAAGTTCGAAAGTTCATCCAAGAACCAAGAGACAAACAATTCTCACGTAAATAAGTTC
TTTGAATTAAAACACAAAAACCTGTTTACAAAATGACAAACTATTTACACCAAATGAACAACTCG
GA
Found at i:372320 original size:58 final size:58
Alignment explanation
Indices: 372251--372366 Score: 232
Period size: 58 Copynumber: 2.0 Consensus size: 58
372241 AGAAATAATT
372251 CTCACTTCAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTA
1 CTCACTTCAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTA
372309 CTCACTTCAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTA
1 CTCACTTCAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTA
372367 TTTAGACAAA
Statistics
Matches: 58, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
58 58 1.00
ACGTcount: A:0.43, C:0.17, G:0.09, T:0.31
Consensus pattern (58 bp):
CTCACTTCAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTA
Found at i:373717 original size:215 final size:216
Alignment explanation
Indices: 372317--374757 Score: 2592
Period size: 215 Copynumber: 11.3 Consensus size: 216
372307 TACTCACTTC
* *
372317 AATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACAAAATGAT
1 AATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGAT
* * * * * *
372382 GCGATTTCCCGAGCAGGGAATGTTCGGAAAATTACTCTAATGAATGGATCATCTTGAATACTGTA
66 GCGATTTCCCGAGCATGGAATGTTCAGAAAATTGCTCTAAGGAATGGATCGTCTTGAATACTTTA
* *
372447 AGGAAC-CATAGTTATAAAAGAACTC-TAAAA-TTTGGACAAG-TTCGGAGATCGTCCAAGAACC
131 AGGAACTGA-AGTTATAAAAGAACTCGTAAAAGTTT-GACAAGTTTGGGAGATCGTCCAAGAACC
*
372508 AAGAGAGAAACAATTCTCACGTA
194 AAGAGAGAAACAATTCTCAAGTA
* * * ** * * *
372531 AATAAGTCTATAATTGAAAGACCAAATGTTGTTTACAAAATGAAAAACTATTTACACCAAATTAT
1 AATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGAT
* * * *
372596 GTGATTTCCCGAGCATGGAATGTTCGGGAAATAGCT-TGAAGGAATGGATCGTCTTGAATACTTT
66 GCGATTTCCCGAGCATGGAATGTTCAGAAAATTGCTCT-AAGGAATGGATCGTCTTGAATACTTT
* * * * * *
372660 AAGAAACTGAAGTTATAAAAAGAAC-CTATAAAAGTTAGACAAG-TT-GAAAATTTCGTCAAAGA
130 AAGGAACTGAAGTTAT-AAAAGAACTC-GTAAAAGTTTGACAAGTTTGGGAGA--TCGTCCAAGA
* * * *
372722 ACTAAGAGACAGACAATTCTCACGTA
191 ACCAAGAGAGAAACAATTCTCAAGTA
* * * * *
372748 AATAAGTTTTTAATCCAAAGACCAAAAAACTTATTTACAAAATGATAAACTATTTAGACAAAATT
1 AATAAGTTTTTAATTCAAAGACC--AAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATG
** * *
372813 ATGCGATTTTTCGAGCATGGAATGGTC-GAAAAATTGCTCGAAGGAATGGATCGTCTTGAATACT
64 ATGCGATTTCCCGAGCATGGAATGTTCAG-AAAATTGCTCTAAGGAATGGATCGTCTTGAATACT
* * ** * * * ** *
372877 TTAAAGAA-TAGAAGTTATACAAGAACTTTTAAAAGTTTGACTACTTCGAAAGTTCGTCCAAGAA
128 TTAAGGAACT-GAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTTGGGAGATCGTCCAAGAA
*
372941 CCAAGAGAGATACAATTCTCACA-TA
192 CCAAGAGAGAAACAATTCTCA-AGTA
* *
372966 AATAAGTTCTTTTAATTCAAAGACCAAAACTTGTTTACAAAACGACAAAC-ATTTTAGATCAAAT
1 AATAAG-T-TTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTA-TTTAGACCAAAT
* * * * * *
373030 GATGCGATTTCTCGAGCATGGAATGTTCAAAAAATTACTCAAAGGAATGGATCATCTCGAATA-T
63 GATGCGATTTCCCGAGCATGGAATGTTCAGAAAATTGCTCTAAGGAATGGATCGTCTTGAATACT
* * * * * *
373094 ATTAAGGAA-TCAAAGTTATAAAAGAACTCTTAACAGTTTGACAAG-TTCGGATGTTAGTCCAAG
128 -TTAAGGAACT-GAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTTGGGA-GATCGTCCAAG
* *
373157 AACCAAGAGAGAAAACAATTCTCACGTT
190 AACCAAGAGAG-AAACAATTCTCAAGTA
* * *
373185 AATAAGTTTTTAATTAAAAGACCAAAACTTGTTTACAAAATGACAAACAATTAAGACCAAATGAT
1 AATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGAT
* * * * * *
373250 GCAATTTCCTGTGCATGGACTAT-TTGA-AAAATTGCTCTAATGAGTGGATCGTCTTGAATA-TC
66 GCGATTTCCCGAGCATGGA--ATGTTCAGAAAATTGCTCTAAGGAATGGATCGTCTTGAATACT-
* * * * *
373312 TTAAGGAA-TCGAAGTTATAAAAGAACCCTTAAATGTTTGACAAGTTT-GGATGTTCATCCAAGA
128 TTAAGGAACT-GAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTTGGGA-GATCGTCCAAGA
*
373375 ACCAAGAGAGAAACAATTCTCACGTA
191 ACCAAGAGAGAAACAATTCTCAAGTA
* * * * *
373401 AATAAGTTTTTAATTAAAAGATCAAAAATTGTTTACAAAATGACAAACAATTCAGACCAAATGAT
1 AATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGAT
* * * * * **
373466 GCAATTTCCTGAGCATAGAATGTTC-GAAAAATTGCTCTAAGGAGTGGATCATCAAGAATACTTT
66 GCGATTTCCCGAGCATGGAATGTTCAG-AAAATTGCTCTAAGGAATGGATCGTCTTGAATACTTT
* *
373530 AAGGAACTGAAGTTATAAAAGAACTC-TAAAAGTTTGACAAGTTTGGGAGATCATCTAAGAACCA
130 AAGGAACTGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTTGGGAGATCGTCCAAGAACCA
373594 AGAGAGAAACAATTCTCAAGTA
195 AGAGAGAAACAATTCTCAAGTA
* * * *
373616 AATAAGTTTTTAATTCAAAGTCTAAAAGTTGTTTACGAAATGACAAACTATTTAGACCAAATGAT
1 AATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGAT
* * * *
373681 GCGATTTCCCGAGCATGGAATTTTCAGAAAATTGCTCAAAAGAATGGATTGTCTTGAATACTTTA
66 GCGATTTCCCGAGCATGGAATGTTCAGAAAATTGCTCTAAGGAATGGATCGTCTTGAATACTTTA
* * * ** *
373746 TGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGAAAAGTTCAGGAGATCGTCCAAGAACCTA
131 AGGAACTGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTTGGGAGATCGTCCAAGAACCAA
*
373811 GAGAGAAGCAATTCT-AACGTA
196 GAGAGAAACAATTCTCAA-GTA
* * *
373832 AATAAGTTTTTAATTCAAAGACAAAAACTTGTTTAAAAAATGACAAACTATTTAGACCTAATGAT
1 AATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGAT
* * * * * * * * ***
373897 GCGATTTCCCCAACAAGAAATGTTCGGAGAATTGTTCTAATGAATGGATCGTCAAAAATACTTTA
66 GCGATTTCCCGAGCATGGAATGTTCAGAAAATTGCTCTAAGGAATGGATCGTCTTGAATACTTTA
* * * * *
373962 AGGAAC-GAAAGTTATTAAAGAACTC-TAAAAGTTTCACAAGTTCGGAAGATCATCCAAG-ACCA
131 AGGAACTG-AAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTTGGGAGATCGTCCAAGAACCA
* *
374024 AGAGAGACATAATTCTCAAGTA
195 AGAGAGAAACAATTCTCAAGTA
* * *
374046 AATAAGTTTTTAATTCAAAGACCAAAAGTTATTTACAAAATGAAAAACTATTTAGACCAAATGAT
1 AATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGAT
* ** * * * * *
374111 GTGATTTCCTAAGCATGGGATG-CCTAGAAAATTGCTCGAAGGAATGGATTGTCTTGAAAACTTT
66 GCGATTTCCCGAGCATGGAATGTTC-AGAAAATTGCTCTAAGGAATGGATCGTCTTGAATACTTT
* * * ** ** * *
374175 AAGGAACCGAAGTTATAAAAGAACTCGT-AAAGTTAGACAGGTTTGAAATTTCATTCAAGAACCA
130 AAGGAACTGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTTGGGAGATCGTCCAAGAACCA
* *
374239 AGAGACAAACAATTCTCATGTA
195 AGAGAGAAACAATTCTCAAGTA
* * ** *
374261 AATAAGTTCTTTGAATTCAAACACAAAAACTTGTTTATGAAATGACAAACTATTTAGACCATATG
1 AATAAGTT-TTT-AATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATG
* * *
374326 ATGCGATTTCTCGAGCATGGAATGTTC-GAAAAATTGCTCAAAGGAGTGGATCGTCTTGAATACT
64 ATGCGATTTCCCGAGCATGGAATGTTCAG-AAAATTGCTCTAAGGAATGGATCGTCTTGAATACT
* * * * * * *** ** *
374390 TCAAGGAA-TCGAAGTTATACATGAACTCATAAAAGTTAGACAGGTTTTAAATTTTGTCCAAGAA
128 TTAAGGAACT-GAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTTGGGAGATCGTCCAAGAA
*
374454 CCAAGAGACAAACAATTCTCACA-TA
192 CCAAGAGAGAAACAATTCTCA-AGTA
* * * *
374479 AATAAGTTTTTAATCCAAAGACCAAAAAACTTATTCACAAAATTACAAACTATTTAGACC-AA--
1 AATAAGTTTTTAATTCAAAGACC--AAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATG
* * * * **
374541 ATGCGATTTTCCAAGCATGGAATGTTTAGAAAATTGCTCGAAGGAATGGATTATCTTGAATACTT
64 ATGCGATTTCCCGAGCATGGAATGTTCAGAAAATTGCTCTAAGGAATGGATCGTCTTGAATACTT
** *
374606 TAAGGAACCAAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGGGAGATCGTCCAAGAACC
129 TAAGGAACTGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTTGGGAGATCGTCCAAGAACC
*
374671 AAGAGAGAAACAATTCTCATGTA
194 AAGAGAGAAACAATTCTCAAGTA
* *
374694 AATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATATAGACCAAATGA
1 AATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGA
374758 AAAACTATTT
Statistics
Matches: 1877, Mismatches: 291, Indels: 116
0.82 0.13 0.05
Matches are distributed among these distances:
213 32 0.02
214 296 0.16
215 409 0.22
216 361 0.19
217 340 0.18
218 298 0.16
219 124 0.07
220 17 0.01
ACGTcount: A:0.41, C:0.14, G:0.17, T:0.28
Consensus pattern (216 bp):
AATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGAT
GCGATTTCCCGAGCATGGAATGTTCAGAAAATTGCTCTAAGGAATGGATCGTCTTGAATACTTTA
AGGAACTGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTTGGGAGATCGTCCAAGAACCAA
GAGAGAAACAATTCTCAAGTA
Found at i:373758 original size:431 final size:430
Alignment explanation
Indices: 372317--374757 Score: 2715
Period size: 431 Copynumber: 5.6 Consensus size: 430
372307 TACTCACTTC
* * *
372317 AATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACAAAATGAT
1 AATAAGTTTTTAATTCAAAGACCAAAACTTATTTACAAAATGACAAACTATTTAGACCAAATGAT
* * * * * * * *
372382 GCGATTTCCCGAGCAGGGAATGTTCGGAAAATTACTCTAATGAATGGATCATCTTGAATACTGTA
66 GCGATTTCCCGAGCATGGAATTTTCAGAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTA
372447 AGGAACC-ATAGTTATAAAAGAACTC-TAAAA-TTTGGACAAGTTCGGAGATCGTCCAAGAACCA
131 AGGAACCGA-AGTTATAAAAGAACTCGTAAAAGTTT-GACAAGTTCGGAGATCGTCCAAGAACCA
* * * **
372509 AGAGAGAAACAATTCTCACGTAAATAAGTCTATAATTGAAAGACCAAATGTTGTTTACAAAATGA
194 AGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAATTGTTTACAAAATGA
* * * * * ** *
372574 AAAACTATTTACACCAAATTATGTGATTTCCCGAGCATGGAATGTTCGGGAAATAGCT-TGAAGG
259 CAAACTATTTAGACCAAATGATGCGATTTCCTGAGCATGGAATGTTCGAAAAATTGCTCT-AAGG
* * * *
372638 AATGGATCGTCTTGAATACTTTAAGAAACTGAAGTTATAAAAAGAACCTATAAAAGTTAGACAAG
323 AATGGATCGTCTAGAATACTTTAAGGAACTGAAGTTAT-AAAAGAA-CTCTAAAAGTTTGACAAG
* * * * * * *
372703 -TT-GAAAATTTCGTCAAAGAACTAAGAGACAGACAATTCTCACGTA
386 TTTGGAAGA--TCATCCAAGAACCAAGAGAGAAACAATTCTCAAGTA
* * * *
372748 AATAAGTTTTTAATCCAAAGACCAAAAAACTTATTTACAAAATGATAAACTATTTAGACAAAATT
1 AATAAGTTTTTAATTCAAAGACC--AAAACTTATTTACAAAATGACAAACTATTTAGACCAAATG
** **
372813 ATGCGATTTTTCGAGCATGGAATGGTC-GAAAAATTGCTCGAAGGAATGGATCGTCTTGAATACT
64 ATGCGATTTCCCGAGCATGGAATTTTCAG-AAAATTGCTCGAAGGAATGGATCGTCTTGAATACT
* ** * ** * * * *
372877 TTAAAGAATAGAAGTTATACAAGAACTTTTAAAAGTTTGACTACTTCGAAAGTTCGTCCAAGAAC
128 TTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCG-GAGATCGTCCAAGAAC
* * *
372942 CAAGAGAGATACAATTCTCACATAAATAAGTTCTTTTAATTCAAAGACCAAAACTTGTTTACAAA
192 CAAGAGAGAAACAATTCTCACGTAAATAAG-T-TTTTAATTCAAAGACCAAAAATTGTTTACAAA
* * * *
373007 ACGACAAAC-ATTTTAGATCAAATGATGCGATTT-CTCGAGCATGGAATGTTCAAAAAATTACTC
255 ATGACAAACTA-TTTAGACCAAATGATGCGATTTCCT-GAGCATGGAATGTTCGAAAAATTGCTC
* * * * *
373070 AAAGGAATGGATCATCTCGAATA-TATTAAGGAA-TCAAAGTTATAAAAGAACTCTTAACAGTTT
318 TAAGGAATGGATCGTCTAGAATACT-TTAAGGAACT-GAAGTTATAAAAGAACTC-TAAAAGTTT
* * * * *
373133 GACAAGTTCGGATG-TTAGTCCAAGAACCAAGAGAGAAAACAATTCTCACGTT
380 GACAAGTTTGGAAGATCA-TCCAAGAACCAAGAGAG-AAACAATTCTCAAGTA
* * * *
373185 AATAAGTTTTTAATTAAAAGACCAAAACTTGTTTACAAAATGACAAACAATTAAGACCAAATGAT
1 AATAAGTTTTTAATTCAAAGACCAAAACTTATTTACAAAATGACAAACTATTTAGACCAAATGAT
* * * * * * * *
373250 GCAATTTCCTGTGCATGGACTATTTGA-AAAATTGCTCTAATGAGTGGATCGTCTTGAATA-TCT
66 GCGATTTCCCGAGCATGGAAT-TTTCAGAAAATTGCTCGAAGGAATGGATCGTCTTGAATACT-T
* * * * * * *
373313 TAAGGAATCGAAGTTATAAAAGAACCCTTAAATGTTTGACAAGTTTGGATGTTCATCCAAGAACC
129 TAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGGA-GATCGTCCAAGAACC
* *
373378 AAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTAAAAGATCAAAAATTGTTTACAAAATG
193 AAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAATTGTTTACAAAATG
* * * *
373443 ACAAACAATTCAGACCAAATGATGCAATTTCCTGAGCATAGAATGTTCGAAAAATTGCTCTAAGG
258 ACAAACTATTTAGACCAAATGATGCGATTTCCTGAGCATGGAATGTTCGAAAAATTGCTCTAAGG
* * *
373508 AGTGGATCATCAAGAATACTTTAAGGAACTGAAGTTATAAAAGAACTCTAAAAGTTTGACAAGTT
323 AATGGATCGTCTAGAATACTTTAAGGAACTGAAGTTATAAAAGAACTCTAAAAGTTTGACAAGTT
* *
373573 TGGGAGATCATCTAAGAACCAAGAGAGAAACAATTCTCAAGTA
388 TGGAAGATCATCCAAGAACCAAGAGAGAAACAATTCTCAAGTA
* * * * *
373616 AATAAGTTTTTAATTCAAAGTCTAAAAGTTGTTTACGAAATGACAAACTATTTAGACCAAATGAT
1 AATAAGTTTTTAATTCAAAGACCAAAACTTATTTACAAAATGACAAACTATTTAGACCAAATGAT
* * *
373681 GCGATTTCCCGAGCATGGAATTTTCAGAAAATTGCTCAAAAGAATGGATTGTCTTGAATACTTTA
66 GCGATTTCCCGAGCATGGAATTTTCAGAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTA
* * *
373746 TGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGAAAAGTTCAGGAGATCGTCCAAGAACCTA
131 AGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTC-GGAGATCGTCCAAGAACCAA
* * *
373811 GAGAGAAGCAATTCTAACGTAAATAAGTTTTTAATTCAAAGA-CAAAAACTTGTTTAAAAAATGA
195 GAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAA-TTGTTTACAAAATGA
* ** * * * * * * *
373875 CAAACTATTTAGACCTAATGATGCGATTTCCCCAACAAGAAATGTTCGGAGAATTGTTCTAATGA
259 CAAACTATTTAGACCAAATGATGCGATTTCCTGAGCATGGAATGTTCGAAAAATTGCTCTAAGGA
* * * *
373940 ATGGATCGTCAAAAATACTTTAAGGAAC-GAAAGTTATTAAAGAACTCTAAAAGTTTCACAAGTT
324 ATGGATCGTCTAGAATACTTTAAGGAACTG-AAGTTATAAAAGAACTCTAAAAGTTTGACAAGTT
* * *
374004 CGGAAGATCATCCAAG-ACCAAGAGAGACATAATTCTCAAGTA
388 TGGAAGATCATCCAAGAACCAAGAGAGAAACAATTCTCAAGTA
* *
374046 AATAAGTTTTTAATTCAAAGACCAAAAGTTATTTACAAAATGAAAAACTATTTAGACCAAATGAT
1 AATAAGTTTTTAATTCAAAGACCAAAACTTATTTACAAAATGACAAACTATTTAGACCAAATGAT
* ** * ** * *
374111 GTGATTTCCTAAGCATGGGA-TGCCTAGAAAATTGCTCGAAGGAATGGATTGTCTTGAAAACTTT
66 GCGATTTCCCGAGCATGGAATTTTC-AGAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTT
* * * * * *
374175 AAGGAACCGAAGTTATAAAAGAACTCGT-AAAGTTAGACAGGTT-TGAAATTTCATTCAAGAACC
130 AAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGGAGA--TCGTCCAAGAACC
* * * **
374238 AAGAGACAAACAATTCTCATGTAAATAAGTTCTTTGAATTCAAACA-CAAAAACTTGTTTATGAA
193 AAGAGAGAAACAATTCTCACGTAAATAAGTT-TTT-AATTCAAAGACCAAAAA-TTGTTTACAAA
* *
374302 ATGACAAACTATTTAGACCATATGATGCGATTT-CTCGAGCATGGAATGTTCGAAAAATTGCTCA
255 ATGACAAACTATTTAGACCAAATGATGCGATTTCCT-GAGCATGGAATGTTCGAAAAATTGCTCT
* * * * * *
374366 AAGGAGTGGATCGTCTTGAATACTTCAAGGAA-TCGAAGTTATACATGAACTCATAAAAGTTAGA
319 AAGGAATGGATCGTCTAGAATACTTTAAGGAACT-GAAGTTATAAAAGAACTC-TAAAAGTTTGA
* ** ** ** *
374430 CAGGTTTTAAATTTTGTCCAAGAACCAAGAGACAAACAATTCTCACA-TA
382 CAAGTTTGGAAGATCATCCAAGAACCAAGAGAGAAACAATTCTCA-AGTA
* * *
374479 AATAAGTTTTTAATCCAAAGACCAAAAAACTTATTCACAAAATTACAAACTATTTAGACC-AA--
1 AATAAGTTTTTAATTCAAAGACC--AAAACTTATTTACAAAATGACAAACTATTTAGACCAAATG
* * **
374541 ATGCGATTTTCCAAGCATGGAATGTTT-AGAAAATTGCTCGAAGGAATGGATTATCTTGAATACT
64 ATGCGATTTCCCGAGCATGGAAT-TTTCAGAAAATTGCTCGAAGGAATGGATCGTCTTGAATACT
*
374605 TTAAGGAACCAAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGGGAGATCGTCCAAGAAC
128 TTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTC-GGAGATCGTCCAAGAAC
* *
374670 CAAGAGAGAAACAATTCTCATGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAAT
192 CAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAATTGTTTACAAAAT
*
374735 GACAAACTATATAGACCAAATGA
257 GACAAACTATTTAGACCAAATGA
374758 AAAACTATTT
Statistics
Matches: 1698, Mismatches: 260, Indels: 104
0.82 0.13 0.05
Matches are distributed among these distances:
427 3 0.00
429 51 0.03
430 178 0.10
431 525 0.31
432 154 0.09
433 333 0.20
434 26 0.02
435 243 0.14
436 40 0.02
437 143 0.08
438 2 0.00
ACGTcount: A:0.41, C:0.14, G:0.17, T:0.28
Consensus pattern (430 bp):
AATAAGTTTTTAATTCAAAGACCAAAACTTATTTACAAAATGACAAACTATTTAGACCAAATGAT
GCGATTTCCCGAGCATGGAATTTTCAGAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTA
AGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGGAGATCGTCCAAGAACCAAG
AGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAATTGTTTACAAAATGACA
AACTATTTAGACCAAATGATGCGATTTCCTGAGCATGGAATGTTCGAAAAATTGCTCTAAGGAAT
GGATCGTCTAGAATACTTTAAGGAACTGAAGTTATAAAAGAACTCTAAAAGTTTGACAAGTTTGG
AAGATCATCCAAGAACCAAGAGAGAAACAATTCTCAAGTA
Found at i:376917 original size:18 final size:19
Alignment explanation
Indices: 376876--376968 Score: 75
Period size: 18 Copynumber: 4.8 Consensus size: 19
376866 TAACAACAAA
*
376876 AGAAAAAGAGAAAAAACATG
1 AGAAAAAGA-AAAAAAAATG
*
376896 AGAAAATGAAAAAAAAAT-
1 AGAAAAAGAAAAAAAAATG
*
376914 AGAAAAAGAAAAAGAGAATG
1 AGAAAAAGAAAAA-AAAATG
* * *
376934 AGGGAAAAGAAAAAGAGA-G
1 A-GAAAAAGAAAAAAAAATG
376953 CA-AAAAAGAAAAAAAA
1 -AGAAAAAGAAAAAAAA
376969 TAAAAGAACA
Statistics
Matches: 58, Mismatches: 11, Indels: 10
0.73 0.14 0.13
Matches are distributed among these distances:
18 23 0.40
19 13 0.22
20 11 0.19
21 11 0.19
ACGTcount: A:0.73, C:0.02, G:0.20, T:0.04
Consensus pattern (19 bp):
AGAAAAAGAAAAAAAAATG
Found at i:380141 original size:48 final size:47
Alignment explanation
Indices: 380073--380193 Score: 179
Period size: 48 Copynumber: 2.5 Consensus size: 47
380063 TATTTATGCT
* *
380073 TCATTAATTTTTTTTTTGTTAAATGCATCTTTGTTTAATAATCTGCA
1 TCATTAATGTTTTGTTTGTTAAATGCATCTTTGTTTAATAATCTGCA
*
380120 TCATTAAGTGTTTTGTTTGTTAAATGCATCTTTGTTTAGTAATCTGCA
1 TCATTAA-TGTTTTGTTTGTTAAATGCATCTTTGTTTAATAATCTGCA
* *
380168 TTATTAACTGTTATGTTTGTTAAATG
1 TCATTAA-TGTTTTGTTTGTTAAATG
380194 TTTTGTTCAA
Statistics
Matches: 67, Mismatches: 6, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
47 7 0.10
48 60 0.90
ACGTcount: A:0.25, C:0.09, G:0.13, T:0.53
Consensus pattern (47 bp):
TCATTAATGTTTTGTTTGTTAAATGCATCTTTGTTTAATAATCTGCA
Found at i:382764 original size:236 final size:233
Alignment explanation
Indices: 382320--382768 Score: 587
Period size: 236 Copynumber: 1.9 Consensus size: 233
382310 AATTCTCACT
** *
382320 TAAATAACTTTTTAATTGAAAGACCAAAAATTATTTACAAAATGACAAACTATTTACACCAAATG
1 TAAATAACTTTTTAATCCAAAGACAAAAAATTATTTACAAAATGACAAACTATTTACACCAAATG
* * *
382385 ATGTGATTTGCCGAGCGAAATGTTCGAGAAATAGCTTGAAGGAATGGATCATCTTGAATACTTTA
66 ATGTGATTTGCCGAGCGAAATGGTCGAAAAATAGCTCGAAGGAATGGATCATCTTGAATACTTTA
* * *
382450 AGGAACTAAAGTTATAAAAGAACTCGTAAAAGTTAGACAGGTTCGAAATTTCATCCAAGAACCAA
131 AAGAACTAAAGTTATAAAAGAACTCGTAAAAGTTAGACAGGTTCAAAAGTTCATCCAAGAACCAA
* *
382515 GAGATAGACAATTCTCACGTAAATAAGTTTTTTGGTTG
196 GAGAGAAACAATTCTCACGTAAATAAGTTTTTTGGTTG
* * * **
382553 TAAATAAGTTTTTAATCCAAAGACAAAAAAACTTATTTACAGAATGACAAACTATTTAGATGAAA
1 TAAATAACTTTTTAATCCAAAGAC-AAAAAA-TTATTTACAAAATGACAAACTATTTACACCAAA
*** * * * * *
382618 TGATGTGATTTTTTGAGCATGGAATGGTC-AAAAATTGCTCGAATGTATGGATCGTCTTGAATAC
64 TGATGTGATTTGCCGAGC--GAAATGGTCGAAAAATAGCTCGAAGGAATGGATCATCTTGAATAC
* * * *
382682 TTTAAATAACTGAAGTTATAAAAGAACTCGTAAAAGTTTGACTA-GTTCAAAAGTTCGTCCAAGA
127 TTTAAAGAACTAAAGTTATAAAAGAACTCGTAAAAGTTAGAC-AGGTTCAAAAGTTCATCCAAGA
382746 ACCAAGAGAGAAACAATTCTCAC
191 ACCAAGAGAGAAACAATTCTCAC
382769 TTAATAACTT
Statistics
Matches: 183, Mismatches: 28, Indels: 7
0.84 0.13 0.03
Matches are distributed among these distances:
233 21 0.11
234 5 0.03
235 44 0.24
236 105 0.57
237 8 0.04
ACGTcount: A:0.41, C:0.13, G:0.16, T:0.29
Consensus pattern (233 bp):
TAAATAACTTTTTAATCCAAAGACAAAAAATTATTTACAAAATGACAAACTATTTACACCAAATG
ATGTGATTTGCCGAGCGAAATGGTCGAAAAATAGCTCGAAGGAATGGATCATCTTGAATACTTTA
AAGAACTAAAGTTATAAAAGAACTCGTAAAAGTTAGACAGGTTCAAAAGTTCATCCAAGAACCAA
GAGAGAAACAATTCTCACGTAAATAAGTTTTTTGGTTG
Found at i:383452 original size:431 final size:431
Alignment explanation
Indices: 381181--385689 Score: 4870
Period size: 431 Copynumber: 10.4 Consensus size: 431
381171 AGCTCATATC
* * * * * * **
381181 AACTCGTAAAAGTTAGATAGGTTTGGGAGATCGTCCAAGAACCAAAAGAGAAATAATTCTCTTGT
1 AACTCGTAAAAGTTTGACAAGTTT-GGAGATCATCCAAGAACCAAGAGAGAAACAATTCTCACGT
* *
381246 AAATAAGTTTTTAATTCGAAGACTAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGA
65 AAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGA
* ** * * * *
381311 CGC-ATTTTCCAAAGCATGGAATGCTT-GAAAAATTGTTCAAAGGAATGGATCATCTTGAATACT
130 TGCGA-TTTCCCGAGCATGGAATG-TTCGAAAAATTGCTCTAATGAATGGATCGTCTTGAATACT
* *
381374 TTAAGGAACC-AATATTATAAAAGAACTCATAAAAGTTTGACAAGTTCGAAAGTTCGTCCAAGAA
193 TTAAGGAACCGAA-GTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGAAAGTTCGTCCAAGAA
* * *
381438 CCAAGAGAGAAACAATTCTCAAGTAAATAAGTTCCTTTAATTAAAAAACAAAAACTTGTTTACAA
257 CCAAGAGAGAAACAATTCTCAAGTAAATAAGTT--TTTAATTCAAAGACCAAAACTTGTTTACAA
* * **
381503 AATG--ATACTTTTTAGACCAAATGAT-TCGATTTCTCGAGCATGGAATG-TCGGAAAATTGCTC
320 AATGACAAACTATTTAGACCAAATGATGT-GATTTCTCGAGCATGGAATGTTTAGAAAATTGCTC
* * * *
381564 AAAGGAGTGGATCATCTTGAATACTTTAAGGAATCGAAGTTATTAAAG
384 GAAGGAATGGATCATCTTGAATACTTTAAGGAACCGAAGTTATAAAAG
* * * * * *
381612 AACTCATAAAAGTTTGACAAGTTCGGAAGTTCATCCAAGAACCAATAGAGAAACAATTGTCATGT
1 AACTCGTAAAAGTTTGACAAGTTTGG-AGATCATCCAAGAACCAAGAGAGAAACAATTCTCACGT
* * * * * * *
381677 AAATATGTTTTTTATTAAAAGATCAAAAGTTGTTTAGAAAATGACAAACCATTTACACCAAATGA
65 AAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGA
* * * ** * *
381742 TGTGATTTCTCGAGCTTAAAATGTTCGAAAAATT-CTCGAATGAATGGATCGTCTTGAATACTCT
130 TGCGATTTCCCGAGCATGGAATGTTCGAAAAATTGCTCTAATGAATGGATCGTCTTGAATACTTT
* * * *
381806 AAGGAA-TGAAGTTACAAAAGAACTC-TAAAAGTTTTACAAATTC-AGAAGTTCGTCCAAGAACC
195 AAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGA-AAGTTCGTCCAAGAACC
* *
381868 AAGAGAGAAACAATTCTCACA-TAAATAAGTTTTTAATTCAAAGACGAAAAGTTGTTTACAAAAT
259 AAGAGAGAAACAATTCTCA-AGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAAT
* * **
381932 GACAAACTATTTAGACCAAATGATGCGGTTTCTTAAGCATGGAATGTTTAGAAAATTGCTCGAAG
323 GACAAACTATTTAGACCAAATGATGTGATTTCTCGAGCATGGAATGTTTAGAAAATTGCTCGAAG
*** * **
381997 GAATGGATTGCCTTGAATACGTTAAGGGAATTGAAGTTATAAAAG
388 GAATGGATCATCTTGAATACTTTAA-GGAACCGAAGTTATAAAAG
* * * *
382042 AACTTGTAAAAGTTTGACAAGTTCGGGAGATCGTCCAAGAACCAAGAGAGAAACAATTCTCACTT
1 AACTCGTAAAAGTTTGACAAGTT-TGGAGATCATCCAAGAACCAAGAGAGAAACAATTCTCACGT
* * *
382107 CAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGATAAACTATTTAGACAAAATGA
65 AAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGA
* * * *
382172 TGCGATTTCCCGAGCAGGGAATGTTCGAAAAATTACTCTAATGAATGGACCATCTTGAATACTTT
130 TGCGATTTCCCGAGCATGGAATGTTCGAAAAATTGCTCTAATGAATGGATCGTCTTGAATACTTT
* * * * * *
382237 AAGAAACC-ATAGTTATGAAAGAACT-GCAAAAGTTTGACAAGTT-TAGAGATCGTCCAAGAACC
195 AAGGAACCGA-AGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGAAAGTTCGTCCAAGAACC
** * * * *
382299 AAGAGAGAAACAATTCTCACTTAAATAACTTTTTAATTGAAAGACCAAAAATTATTTACAAAATG
259 AAGAGAGAAACAATTCTCAAGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATG
* * * * *
382364 ACAAACTATTTACACCAAATGATGTGATTTGC-CGAGC--GAAATG-TTCGAGAAATAGCTTGAA
324 ACAAACTATTTAGACCAAATGATGTGATTT-CTCGAGCATGGAATGTTTAGA-AAATTGCTCGAA
**
382425 GGAATGGATCATCTTGAATACTTTAAGGAACTAAAGTTATAAAAG
387 GGAATGGATCATCTTGAATACTTTAAGGAACCGAAGTTATAAAAG
* * * * * *
382470 AACTCGTAAAAGTTAGAC-AGGTTCGAAATTTCATCCAAGAACCAAGAGATAGACAATTCTCACG
1 AACTCGTAAAAGTTTGACAAGTTTGGAGA--TCATCCAAGAACCAAGAGAGAAACAATTCTCACG
* * * *
382534 TAAATAAGTTTTTTGGTTGTAAATAAGTTTTTAATCCAAAGACAAAAAAACTTATTTACAGAATG
64 TAAATAAG-----T--TT-T---TAA-----T--T-CAAAGAC--CAAAAGTTGTTTACAAAATG
** * *** * *
382599 ACAAACTATTTAGATGAAATGATGTGATTTTTTGAGCATGGAATGGTC-AAAAATTGCTCGAATG
108 ACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCGAAAAATTGCTCTAATG
* ** * *
382663 TATGGATCGTCTTGAATACTTTAAATAACTGAAGTTATAAAAGAACTCGTAAAAGTTTGACTAGT
173 AATGGATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGT
* * * *
382728 TCAAAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTC-ACTTAATAACTTCTTTTAATTCAAA
238 TCGAAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCAAGTAAATAA-GT-TTTTAATTCAAA
* * *
382792 GACCACAACTTGTTTACAAAATGAC--AGTTTTTAGACCAAATGATGTGATTTCTCGAGCATGGA
301 GACCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGTGATTTCTCGAGCATGGA
* * * * *
382855 ATGTTCAAAAAATTACTCAAAGGAATGGATCATCTTGAATA-TCTTAAGGAATCGAAGTTATAAA
366 ATGTTTAGAAAATTGCTCGAAGGAATGGATCATCTTGAATACT-TTAAGGAACCGAAGTTATAAA
382919 AG
430 AG
* * * * * * *
382921 AACTCTTAAATGTTTGACAAGTTCGAATGTTCGTCCAAGAACCAAGAGAGAAACATTTCTCACGT
1 AACTCGTAAAAGTTTGACAAGTTTGGA-GATCATCCAAGAACCAAGAGAGAAACAATTCTCACGT
* * * * **
382986 AAATAAATTTTTAATTAAAATACCAAAACTTGTTTACAAAATGACAAAGAATTTAGACCAAATGA
65 AAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGA
* * * **
383051 TGCGATTTCCCGAGCATGGAATGTTCAAAAAATTGCTTTAATGAGTGGATCGTCAAGAATACTTT
130 TGCGATTTCCCGAGCATGGAATGTTCGAAAAATTGCTCTAATGAATGGATCGTCTTGAATACTTT
** * * *
383116 AAGGAATTGAAGTTATAAAAGAACTC-TAAAAGTTTGACAAGTTCGAGAGATCGTCTAAGAACCA
195 AAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGAAAGTTCGTCCAAGAACCA
* * *
383180 AGAGAGAAACAATTCTCAAGTAAATAAGTTTTTAATTAAAAGTCCAAAAGTTGTTTACAAAATGA
260 AGAGAGAAACAATTCTCAAGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGA
* *
383245 CAAACTTTTTAGACCAAATGATGTGATTTCCCGAGCATGGAATGTTTAGAAAATTGCTCGAAGGA
325 CAAACTATTTAGACCAAATGATGTGATTTCTCGAGCATGGAATGTTTAGAAAATTGCTCGAAGGA
** * ***
383310 ATGGATTGTCTTCAATACTTTATTTAACCGAAGTTATAAAAG
390 ATGGATCATCTTGAATACTTTAAGGAACCGAAGTTATAAAAG
* *
383352 AACTCATAAAAGTTTGACAAGTTTAGGAGATCATCCAAGAACCTAGAGAGAAACAATTCTCACGT
1 AACTCGTAAAAGTTTGACAAGTTT-GGAGATCATCCAAGAACCAAGAGAGAAACAATTCTCACGT
* * * * *
383417 AAACAAGTTTTTAATTCAAAGAGCAAAAGTTGTTTACAAAATAAAAAACTATTTAGACCAAATTA
65 AAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGA
** * *
383482 TGCGATTTCCCGAGCAAAGAATGTTCGAAAAATTGTTCTAATGAATGGATCGT-TAAGAATACTT
130 TGCGATTTCCCGAGCATGGAATGTTCGAAAAATTGCTCTAATGAATGGATCGTCT-TGAATACTT
* * *
383546 TAAGGAACCAAAGTTACAAAAAAACTCGTAAAAGTTTGACAAGTTCGAAAGTTCGTCCAAGAACC
194 TAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGAAAGTTCGTCCAAGAACC
* * * *
383611 AACATAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATG
259 AAGAGAGAAACAATTCTCAAGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATG
* *
383676 ACAAACTATTTAGAGCAAATGATGCT-ATTTCCCGAGCATGGAATGTTTAGAAAATTGCTCGAAG
324 ACAAACTATTTAGACCAAATGATG-TGATTTCTCGAGCATGGAATGTTTAGAAAATTGCTCGAAG
** * * * *
383740 GAATGGATTGTGTTGAAAATTTTAAGGAACCAAAGTTATAAAAG
388 GAATGGATCATCTTGAATACTTTAAGGAACCGAAGTTATAAAAG
* * * *
383784 AACCCGAAAAAGTTTGACAAGTTCGGGAGATCATCCAAGAACCTAGAGAGAAACAATTCTCACGT
1 AACTCGTAAAAGTTTGACAAGTT-TGGAGATCATCCAAGAACCAAGAGAGAAACAATTCTCACGT
*
383849 AAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTA-AAAATGACAAACTATTTAAACCAAATGA
65 AAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGA
** * * * * * **
383913 TATGATTTCTCGAGCAAGGAATGTTC-AAAAAATGCTTTATTGAATGGATCGTCAAGAATACTTT
130 TGCGATTTCCCGAGCATGGAATGTTCGAAAAATTGCTCTAATGAATGGATCGTCTTGAATACTTT
* * *
383977 AAGGAACCGAAGTTTTAAAAGAACTCGTAAAAGTTTGACAAGTTCGAAAGTTCATCCAAGAATCA
195 AAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGAAAGTTCGTCCAAGAACCA
* * * * *
384042 ACAAAGAAACAATTCTCAAATAAATAAGTTTTTAATTTAGAGACCAAAACTTGTTTACAAAATGA
260 AGAGAGAAACAATTCTCAAGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGA
* * * * * * *
384107 TAAACTATTTAGACCAAATGATGTGATTTC-C---CTTGGAATGTTCAAAAAATTTCTCAAATGA
325 CAAACTATTTAGACCAAATGATGTGATTTCTCGAGCATGGAATGTTTAGAAAATTGCTCGAAGGA
* *
384168 ATGGATCATCTTGAATACTCTAAGGAATCGAAGTTATAAAAG
390 ATGGATCATCTTGAATACTTTAAGGAACCGAAGTTATAAAAG
* * * * *
384210 AACTC-TAAAAGTTTTACAAGTTCAGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGT
1 AACTCGTAAAAGTTTGACAAGTT-TGGAGATCATCCAAGAACCAAGAGAGAAACAATTCTCACGT
* *
384274 AAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTTTCAAAATGACAAACAATTTAGACCAAATG
65 AAATAAGTTTTTAATTCAAAGACCAAAAGTTG-TTTACAAAATGACAAACTATTTAGACCAAATG
* * * * * * *
384339 ATGCGATTTCCCGAGTATGAAATGTT-GGAAATTTACTCTAAAGAATGGATCATCTTGAATACTT
129 ATGCGATTTCCCGAGCATGGAATGTTCGAAAAATTGCTCTAATGAATGGATCGTCTTGAATACTT
* * * * * * * *
384403 TAAGGAACCAAAGTTATAAATGAAGTCGTAAAAGTTAGACAGGTTTGAAATTTCGTCCTAGAACC
194 TAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGAAAGTTCGTCCAAGAACC
* *
384468 AAGAG-TAAACAATTCTCACGTAAATAAGTTTTTTATCGAAAGTAAATAAGTTGTTAATCGAAAG
259 AAGAGAGAAACAATTCTCAAGTAAATAAG----TT-T------T---TAA-----T--TC-AAAG
* * * * *
384532 ACCAAAAAACTTATTTACAAAATTACAAACTATTTACACCAAATGATGTTATTTTTCGAGCATGG
302 ACC--AAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGTGATTTCTCGAGCATGG
** * *
384597 AA-GGGTCGAAAAATTGCTCGAAGGAATGGATCATCTTGAATACTTTAAGGAACCAAAGTTATAA
365 AATGTTTAG-AAAATTGCTCGAAGGAATGGATCATCTTGAATACTTTAAGGAACCGAAGTTATAA
384661 AAG
429 AAG
* * * * * *
384664 TACTCGTAAAAGTTAGAC-AGGTTCGAAATTTCATCCAAGAACCAAGAGACAAACAATTCTCACG
1 AACTCGTAAAAGTTTGACAAGTTTGGAGA--TCATCCAAGAACCAAGAGAGAAACAATTCTCACG
* *
384728 TAAATAAGTTCTTTGAATTC-AAGCACAAAAACTTGTTTACAAAATGACAAACTATTTAGACCAA
64 TAAATAAGTT-TTT-AATTCAAAG-ACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAA
* * * * * *
384792 ATGATGAGATTTCCCGAGCATGGAATGTTTGGAAAATTGCTCGAAGGAGTGGATCGTCTTGAATA
126 ATGATGCGATTTCCCGAGCATGGAATGTTCGAAAAATTGCTCTAATGAATGGATCGTCTTGAATA
* ** * ** *
384857 CTTCAAGGAATTG-AGTTATAAAAGAACTCGTAAAAGTTAGACAAGTTTTAAATTTCGTCCAAGA
191 CTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGAAAGTTCGTCCAAGA
* * * * * *
384921 ACCAAGAGACAAACAATTCTTAGGTAAATAAGTTTTTTATGCAAAGACCAAAAAACTTATTTACA
256 ACCAAGAGAGAAACAATTCTCAAGTAAATAAGTTTTTAATTCAAAGACC--AAAACTTGTTTACA
* * *
384986 AAATTACAAACTATTTAGACCGAATG--CT-ATTT-TCGAGCATGGAATGTTTAGAAAATTGCTC
319 AAATGACAAACTATTTAGACCAAATGATGTGATTTCTCGAGCATGGAATGTTTAGAAAATTGCTC
* * *
385047 GAAGGAGTGGATTATCTTGAATACTTTAAGGAACCAAAGTTATAAAAG
384 GAAGGAATGGATCATCTTGAATACTTTAAGGAACCGAAGTTATAAAAG
* * * *
385095 AACTCGTAAATGTTTGACAAGTTTGAGAGATCATCTAAGAACCAATAGAGAAACAATTCTCATGT
1 AACTCGTAAAAGTTTGACAAGTTTG-GAGATCATCCAAGAACCAAGAGAGAAACAATTCTCACGT
385160 AAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGAC-AACTATTTAGACCAAATGA
65 AAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGA
* * * * * **
385224 TGCAATTTCCCGAGCAAGGAATGTTCAAAAAATTGCTTTAATAAATGGATCGTCAAGAATACTTT
130 TGCGATTTCCCGAGCATGGAATGTTCGAAAAATTGCTCTAATGAATGGATCGTCTTGAATACTTT
* * * * * *
385289 AAGGAACCAAAGTTATAAAAGAACTCGTAAAAGTTAGACAGGTTC-AGGAGATCATCCAAGAACC
195 AAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGA-AAGTTCGTCCAAGAACC
* * * ** * *
385353 AAAAGAGAAATAATTCTCACGTAAATAAGTTTTTAATTTGAAGACTAAAAGTTGTTTACAAAATG
259 AAGAGAGAAACAATTCTCAAGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATG
* * * * * *
385418 ACAAACTATTTAGACCAAATGATGCGATTTCTAGAGCATGGAATG-CTCGAAAAATTGTTCAAAG
324 ACAAACTATTTAGACCAAATGATGTGATTTCTCGAGCATGGAATGTTTAG-AAAATTGCTCGAAG
** *
385482 GAATGGATTGTCTTGAATACTTTAAGGAACCGATGTTATAAAAG
388 GAATGGATCATCTTGAATACTTTAAGGAACCGAAGTTATAAAAG
* * *
385526 AACTCGTAAAAGTTTGACAAGTTCGGAAGTTCATCCAAGAACCAAGAGAGAAACAATTCTCAAGT
1 AACTCGTAAAAGTTTGACAAGTTTGG-AGATCATCCAAGAACCAAGAGAGAAACAATTCTCACGT
* * * * * * *
385591 AAATAAGTTCCTTTAATTAAAAAACAAAAACTTTTTTATAAAATGAC--ACTTTTTAGACCAAAT
65 AAATAAGTT--TTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAAT
* ** * *
385654 GATTCGATTTCTTGAGCATGAAATGTTCGGAAAATT
128 GATGCGATTTCCCGAGCATGGAATGTTCGAAAAATT
385690 AATCGAAGGA
Statistics
Matches: 3432, Mismatches: 525, Indels: 241
0.82 0.13 0.06
Matches are distributed among these distances:
425 84 0.02
426 118 0.03
427 169 0.05
428 249 0.07
429 230 0.07
430 488 0.14
431 903 0.26
432 376 0.11
433 37 0.01
435 50 0.01
436 2 0.00
437 1 0.00
438 1 0.00
439 3 0.00
440 6 0.00
443 3 0.00
444 3 0.00
445 1 0.00
446 3 0.00
447 8 0.00
448 59 0.02
449 106 0.03
450 80 0.02
451 139 0.04
452 7 0.00
453 4 0.00
454 65 0.02
455 52 0.02
456 113 0.03
457 72 0.02
ACGTcount: A:0.41, C:0.14, G:0.16, T:0.29
Consensus pattern (431 bp):
AACTCGTAAAAGTTTGACAAGTTTGGAGATCATCCAAGAACCAAGAGAGAAACAATTCTCACGTA
AATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGAT
GCGATTTCCCGAGCATGGAATGTTCGAAAAATTGCTCTAATGAATGGATCGTCTTGAATACTTTA
AGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGAAAGTTCGTCCAAGAACCAA
GAGAGAAACAATTCTCAAGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGAC
AAACTATTTAGACCAAATGATGTGATTTCTCGAGCATGGAATGTTTAGAAAATTGCTCGAAGGAA
TGGATCATCTTGAATACTTTAAGGAACCGAAGTTATAAAAG
Found at i:383516 original size:216 final size:216
Alignment explanation
Indices: 381181--385711 Score: 4414
Period size: 216 Copynumber: 20.9 Consensus size: 216
381171 AGCTCATATC
* * * * * * * **
381181 AACTCGTAAAAGTTAGATAGGTTTGGGAGATCGTCCAAGAACCAAAAGAGAAATAATTCTCTTGT
1 AACTCGTAAAAGTTTGACAAGTTTAGGAGATCATCCAAGAACCAAGAGAGAAACAATTCTCACGT
* *
381246 AAATAAGTTTTTAATTCGAAGACTAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGA
66 AAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGA
* ** * * *
381311 CGC-ATTTTCCAAAGCATGGAATGCTT-GAAAAATTGTTCAAAGGAATGGATCATCTTGAATACT
131 TGCGA-TTTCCCGAGCATGGAATG-TTCGAAAAATTGCTCGAAGGAATGGATCGTCTTGAATACT
*
381374 TTAAGGAACC-AATATTATAAAAG
194 TTAAGGAACCGAA-GTTATAAAAG
* * * * * *
381397 AACTCATAAAAGTTTGACAAG-TTCGAAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCAAG
1 AACTCGTAAAAGTTTGACAAGTTTAG-GAGATCATCCAAGAACCAAGAGAGAAACAATTCTCACG
* * * * * *
381461 TAAATAAGTTCCTTTAATTAAAAAACAAAAACTTGTTTACAAAATG--ATACTTTTTAGACCAAA
65 TAAATAAGTT--TTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAA
* * * * * *
381524 TGATTCGATTTCTCGAGCATGGAATG-TCGGAAAATTGCTCAAAGGAGTGGATCATCTTGAATAC
128 TGATGCGATTTCCCGAGCATGGAATGTTCGAAAAATTGCTCGAAGGAATGGATCGTCTTGAATAC
* *
381588 TTTAAGGAATCGAAGTTATTAAAG
193 TTTAAGGAACCGAAGTTATAAAAG
* * * * * *
381612 AACTCATAAAAGTTTGACAAG-TTCGGAAGTTCATCCAAGAACCAATAGAGAAACAATTGTCATG
1 AACTCGTAAAAGTTTGACAAGTTTAGG-AGATCATCCAAGAACCAAGAGAGAAACAATTCTCACG
* * * * * * *
381676 TAAATATGTTTTTTATTAAAAGATCAAAAGTTGTTTAGAAAATGACAAACCATTTACACCAAATG
65 TAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATG
* * * ** * *
381741 ATGTGATTTCTCGAGCTTAAAATGTTCGAAAAATT-CTCGAATGAATGGATCGTCTTGAATACTC
130 ATGCGATTTCCCGAGCATGGAATGTTCGAAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTT
* *
381805 TAAGGAA-TGAAGTTACAAAAG
195 TAAGGAACCGAAGTTATAAAAG
* * * * * * *
381826 AACTC-TAAAAGTTTTACAAATTCAGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACAT
1 AACTCGTAAAAGTTTGACAAGTTTAGGAGATCATCCAAGAACCAAGAGAGAAACAATTCTCACGT
*
381890 AAATAAGTTTTTAATTCAAAGACGAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGA
66 AAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGA
* *** * * * *
381955 TGCGGTTTCTTAAGCATGGAATGTT-TAGAAAATTGCTCGAAGGAATGGATTGCCTTGAATACGT
131 TGCGATTTCCCGAGCATGGAATGTTCGA-AAAATTGCTCGAAGGAATGGATCGTCTTGAATACTT
**
382019 TAAGGGAATTGAAGTTATAAAAG
195 TAA-GGAACCGAAGTTATAAAAG
* ** * *
382042 AACTTGTAAAAGTTTGACAAGTTCGGGAGATCGTCCAAGAACCAAGAGAGAAACAATTCTCACTT
1 AACTCGTAAAAGTTTGACAAGTTTAGGAGATCATCCAAGAACCAAGAGAGAAACAATTCTCACGT
* * *
382107 CAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGATAAACTATTTAGACAAAATGA
66 AAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGA
* * * * * *
382172 TGCGATTTCCCGAGCAGGGAATGTTCGAAAAATTACTCTAATGAATGGACCATCTTGAATACTTT
131 TGCGATTTCCCGAGCATGGAATGTTCGAAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTT
* *
382237 AAGAAACC-ATAGTTATGAAAG
196 AAGGAACCGA-AGTTATAAAAG
* * *
382258 AACT-GCAAAAGTTTGACAAGTTTA-GAGATCGTCCAAGAACCAAGAGAGAAACAATTCTCACTT
1 AACTCGTAAAAGTTTGACAAGTTTAGGAGATCATCCAAGAACCAAGAGAGAAACAATTCTCACGT
* * * * *
382321 AAATAACTTTTTAATTGAAAGACCAAAAATTATTTACAAAATGACAAACTATTTACACCAAATGA
66 AAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGA
* * * * * * *
382386 TGTGATTTGCCGAGC--GAAATGTTCGAGAAATAGCTTGAAGGAATGGATCATCTTGAATACTTT
131 TGCGATTTCCCGAGCATGGAATGTTCGAAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTT
**
382449 AAGGAACTAAAGTTATAAAAG
196 AAGGAACCGAAGTTATAAAAG
* * * * * *
382470 AACTCGTAAAAGTTAGAC-AGGTT-CGAAATTTCATCCAAGAACCAAGAGATAGACAATTCTCAC
1 AACTCGTAAAAGTTTGACAAGTTTAGGAGA--TCATCCAAGAACCAAGAGAGAAACAATTCTCAC
** * ***** ***
382533 GTAAATAAGTTTTTTGGTTGTAAATAAGTTTTTAATCCAAAGACAAAAAAACTTATTTACAGAAT
64 GTAAATAAG-TTTTT-AAT-T-CA-AAG------A-CC----A-AAAGTTGTTTACAAA----AT
** * *** * *
382598 GACAAACTATTTAGATGAAATGATGTGATTTTTTGAGCATGGAATGGTC-AAAAATTGCTCGAAT
108 GACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCGAAAAATTGCTCGAAG
* ** *
382662 GTATGGATCGTCTTGAATACTTTAAATAACTGAAGTTATAAAAG
173 GAATGGATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAG
* * ** * *
382706 AACTCGTAAAAGTTTGACTAGTTCAAAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCAC-T
1 AACTCGTAAAAGTTTGACAAGTTTAGGAGATCATCCAAGAACCAAGAGAGAAACAATTCTCACGT
* * * * * *
382770 TAATAACTTCTTTTAATTCAAAGACCACAACTTGTTTACAAAATGAC--AGTTTTTAGACCAAAT
66 AAATAA-GT-TTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAAT
* * * * * *
382833 GATGTGATTTCTCGAGCATGGAATGTTCAAAAAATTACTCAAAGGAATGGATCATCTTGAATA-T
129 GATGCGATTTCCCGAGCATGGAATGTTCGAAAAATTGCTCGAAGGAATGGATCGTCTTGAATACT
*
382897 CTTAAGGAATCGAAGTTATAAAAG
194 -TTAAGGAACCGAAGTTATAAAAG
* * * * * * *
382921 AACTCTTAAATGTTTGACAAG-TTCGAATGTTCGTCCAAGAACCAAGAGAGAAACATTTCTCACG
1 AACTCGTAAAAGTTTGACAAGTTTAGGA-GATCATCCAAGAACCAAGAGAGAAACAATTCTCACG
* * * * **
382985 TAAATAAATTTTTAATTAAAATACCAAAACTTGTTTACAAAATGACAAAGAATTTAGACCAAATG
65 TAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATG
* ** * * **
383050 ATGCGATTTCCCGAGCATGGAATGTTCAAAAAATTGCTTTAATGAGTGGATCGTCAAGAATACTT
130 ATGCGATTTCCCGAGCATGGAATGTTCGAAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTT
**
383115 TAAGGAATTGAAGTTATAAAAG
195 TAAGGAACCGAAGTTATAAAAG
* * * *
383137 AACTC-TAAAAGTTTGACAAG-TTCGAGAGATCGTCTAAGAACCAAGAGAGAAACAATTCTCAAG
1 AACTCGTAAAAGTTTGACAAGTTTAG-GAGATCATCCAAGAACCAAGAGAGAAACAATTCTCACG
* * *
383200 TAAATAAGTTTTTAATTAAAAGTCCAAAAGTTGTTTACAAAATGACAAACTTTTTAGACCAAATG
65 TAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATG
* * * *
383265 ATGTGATTTCCCGAGCATGGAATGTT-TAGAAAATTGCTCGAAGGAATGGATTGTCTTCAATACT
130 ATGCGATTTCCCGAGCATGGAATGTTCGA-AAAATTGCTCGAAGGAATGGATCGTCTTGAATACT
***
383329 TTATTTAACCGAAGTTATAAAAG
194 TTAAGGAACCGAAGTTATAAAAG
* *
383352 AACTCATAAAAGTTTGACAAGTTTAGGAGATCATCCAAGAACCTAGAGAGAAACAATTCTCACGT
1 AACTCGTAAAAGTTTGACAAGTTTAGGAGATCATCCAAGAACCAAGAGAGAAACAATTCTCACGT
* * * * *
383417 AAACAAGTTTTTAATTCAAAGAGCAAAAGTTGTTTACAAAATAAAAAACTATTTAGACCAAATTA
66 AAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGA
** * * * *
383482 TGCGATTTCCCGAGCAAAGAATGTTCGAAAAATTGTTCTAATGAATGGATCGT-TAAGAATACTT
131 TGCGATTTCCCGAGCATGGAATGTTCGAAAAATTGCTCGAAGGAATGGATCGTCT-TGAATACTT
* * *
383546 TAAGGAACCAAAGTTACAAAAA
195 TAAGGAACCGAAGTTATAAAAG
* * * * * *
383568 AACTCGTAAAAGTTTGACAAG-TTCGAAAGTTCGTCCAAGAACCAACATAGAAACAATTCTCACG
1 AACTCGTAAAAGTTTGACAAGTTTAG-GAGATCATCCAAGAACCAAGAGAGAAACAATTCTCACG
*
383632 TAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAGAGCAAATG
65 TAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATG
* * * * * *
383697 ATGCTATTTCCCGAGCATGGAATGTT-TAGAAAATTGCTCGAAGGAATGGATTGTGTTGAAAATT
130 ATGCGATTTCCCGAGCATGGAATGTTCGA-AAAATTGCTCGAAGGAATGGATCGTCTTGAATACT
*
383761 TTAAGGAACCAAAGTTATAAAAG
194 TTAAGGAACCGAAGTTATAAAAG
* * ** *
383784 AACCCGAAAAAGTTTGACAAGTTCGGGAGATCATCCAAGAACCTAGAGAGAAACAATTCTCACGT
1 AACTCGTAAAAGTTTGACAAGTTTAGGAGATCATCCAAGAACCAAGAGAGAAACAATTCTCACGT
*
383849 AAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTA-AAAATGACAAACTATTTAAACCAAATGA
66 AAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGA
** * * * ** ** **
383913 TATGATTTCTCGAGCAAGGAATGTTC-AAAAAATGCTTTATTGAATGGATCGTCAAGAATACTTT
131 TGCGATTTCCCGAGCATGGAATGTTCGAAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTT
*
383977 AAGGAACCGAAGTTTTAAAAG
196 AAGGAACCGAAGTTATAAAAG
* * * * * * **
383998 AACTCGTAAAAGTTTGACAAG-TTCGAAAGTTCATCCAAGAATCAACAAAGAAACAATTCTCAAA
1 AACTCGTAAAAGTTTGACAAGTTTAG-GAGATCATCCAAGAACCAAGAGAGAAACAATTCTCACG
* * * *
384062 TAAATAAGTTTTTAATTTAGAGACCAAAACTTGTTTACAAAATGATAAACTATTTAGACCAAATG
65 TAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATG
* * * * * * * *
384127 ATGTGATTT-CC---CTTGGAATGTTCAAAAAATTTCTCAAATGAATGGATCATCTTGAATACTC
130 ATGCGATTTCCCGAGCATGGAATGTTCGAAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTT
*
384188 TAAGGAATCGAAGTTATAAAAG
195 TAAGGAACCGAAGTTATAAAAG
* * * * *
384210 AACTC-TAAAAGTTTTACAAGTTCAGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGT
1 AACTCGTAAAAGTTTGACAAGTTTAGGAGATCATCCAAGAACCAAGAGAGAAACAATTCTCACGT
* *
384274 AAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTTTCAAAATGACAAACAATTTAGACCAAATG
66 AAATAAGTTTTTAATTCAAAGACCAAAAGTTG-TTTACAAAATGACAAACTATTTAGACCAAATG
* * * * * * * *
384339 ATGCGATTTCCCGAGTATGAAATGTT-GGAAATTTACTCTAAAGAATGGATCATCTTGAATACTT
130 ATGCGATTTCCCGAGCATGGAATGTTCGAAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTT
* *
384403 TAAGGAACCAAAGTTATAAATG
195 TAAGGAACCGAAGTTATAAAAG
* * * * * * *
384425 AAGTCGTAAAAGTTAGACAGGTTT--GAAATTTCGTCCTAGAACCAAGAG-TAAACAATTCTCAC
1 AACTCGTAAAAGTTTGACAAGTTTAGGAGA--TCATCCAAGAACCAAGAGAGAAACAATTCTCAC
*
384487 GTAAATAAGTTTTTTA-TCGAAAGTA--AATAAGTTGTTAATCGAAAGACCAAAAAACTTATTTA
64 GTAAATAAGTTTTTAATTC-AAAG-ACCAA-AAGTTGTT--T--------------AC--A---A
* * ** ** * *
384549 CAAAATTACAAACTATTTACACCAAATGATGTTATTTTTCGAGCATGGAAGGGTCGAAAAATTGC
105 ---AATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCGAAAAATTGC
* *
384614 TCGAAGGAATGGATCATCTTGAATACTTTAAGGAACCAAAGTTATAAAAG
167 TCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAG
* * * * * *
384664 TACTCGTAAAAGTTAGAC-AGGTT-CGAAATTTCATCCAAGAACCAAGAGACAAACAATTCTCAC
1 AACTCGTAAAAGTTTGACAAGTTTAGGAGA--TCATCCAAGAACCAAGAGAGAAACAATTCTCAC
* *
384727 GTAAATAAGTTCTTTGAATTC-AAGCACAAAAACTTGTTTACAAAATGACAAACTATTTAGACCA
64 GTAAATAAGTT-TTT-AATTCAAAG-ACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCA
* * * *
384791 AATGATGAGATTTCCCGAGCATGGAATGTTTGGAAAATTGCTCGAAGGAGTGGATCGTCTTGAAT
126 AATGATGCGATTTCCCGAGCATGGAATGTTCGAAAAATTGCTCGAAGGAATGGATCGTCTTGAAT
* **
384856 ACTTCAAGGAATTG-AGTTATAAAAG
191 ACTTTAAGGAACCGAAGTTATAAAAG
* * ** * * * *
384881 AACTCGTAAAAGTTAGACAAGTTTTA-AATTTCGTCCAAGAACCAAGAGACAAACAATTCTTAGG
1 AACTCGTAAAAGTTTGACAAG-TTTAGGAGATCATCCAAGAACCAAGAGAGAAACAATTCTCACG
* * * * * *
384945 TAAATAAGTTTTTTATGCAAAGACCAAAAAACTTATTTACAAAATTACAAACTATTTAGACC-GA
65 TAAATAAGTTTTTAATTCAAAGACC--AAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAA
* * * * **
385009 --ATGCTATTT-TCGAGCATGGAATGTT-TAGAAAATTGCTCGAAGGAGTGGATTATCTTGAATA
128 TGATGCGATTTCCCGAGCATGGAATGTTCGA-AAAATTGCTCGAAGGAATGGATCGTCTTGAATA
*
385070 CTTTAAGGAACCAAAGTTATAAAAG
192 CTTTAAGGAACCGAAGTTATAAAAG
* * * *
385095 AACTCGTAAATGTTTGACAAGTTT-GAGAGATCATCTAAGAACCAATAGAGAAACAATTCTCATG
1 AACTCGTAAAAGTTTGACAAGTTTAG-GAGATCATCCAAGAACCAAGAGAGAAACAATTCTCACG
385159 TAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGAC-AACTATTTAGACCAAATG
65 TAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATG
* * * ** ** **
385223 ATGCAATTTCCCGAGCAAGGAATGTTCAAAAAATTGCTTTAATAAATGGATCGTCAAGAATACTT
130 ATGCGATTTCCCGAGCATGGAATGTTCGAAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTT
*
385288 TAAGGAACCAAAGTTATAAAAG
195 TAAGGAACCGAAGTTATAAAAG
* * * * *
385310 AACTCGTAAAAGTTAGACAGGTTCAGGAGATCATCCAAGAACCAAAAGAGAAATAATTCTCACGT
1 AACTCGTAAAAGTTTGACAAGTTTAGGAGATCATCCAAGAACCAAGAGAGAAACAATTCTCACGT
** *
385375 AAATAAGTTTTTAATTTGAAGACTAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGA
66 AAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGA
** * * * *
385440 TGCGATTTCTAGAGCATGGAATGCTCGAAAAATTGTTCAAAGGAATGGATTGTCTTGAATACTTT
131 TGCGATTTCCCGAGCATGGAATGTTCGAAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTT
*
385505 AAGGAACCGATGTTATAAAAG
196 AAGGAACCGAAGTTATAAAAG
* * *
385526 AACTCGTAAAAGTTTGACAAG-TTCGGAAGTTCATCCAAGAACCAAGAGAGAAACAATTCTCAAG
1 AACTCGTAAAAGTTTGACAAGTTTAGG-AGATCATCCAAGAACCAAGAGAGAAACAATTCTCACG
* * * * * * *
385590 TAAATAAGTTCCTTTAATTAAAAAACAAAAACTTTTTTATAAAATGAC--ACTTTTTAGACCAAA
65 TAAATAAGTT--TTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAA
* ** * * ** * *
385653 TGATTCGATTTCTTGAGCATGAAATGTTCGGAAAATTAATCGAAGGAGTGGATCATCTT
128 TGATGCGATTTCCCGAGCATGGAATGTTCGAAAAATTGCTCGAAGGAATGGATCGTCTT
385712 TGATACGGCC
Statistics
Matches: 3597, Mismatches: 583, Indels: 270
0.81 0.13 0.06
Matches are distributed among these distances:
211 99 0.03
212 179 0.05
213 229 0.06
214 501 0.14
215 842 0.23
216 950 0.26
217 277 0.08
218 146 0.04
219 6 0.00
220 6 0.00
221 2 0.00
224 1 0.00
225 3 0.00
226 5 0.00
230 2 0.00
231 9 0.00
232 4 0.00
233 1 0.00
234 1 0.00
235 43 0.01
236 101 0.03
237 10 0.00
238 44 0.01
239 92 0.03
240 25 0.01
241 7 0.00
242 8 0.00
243 4 0.00
ACGTcount: A:0.41, C:0.14, G:0.17, T:0.29
Consensus pattern (216 bp):
AACTCGTAAAAGTTTGACAAGTTTAGGAGATCATCCAAGAACCAAGAGAGAAACAATTCTCACGT
AAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGA
TGCGATTTCCCGAGCATGGAATGTTCGAAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTT
AAGGAACCGAAGTTATAAAAG
Found at i:384515 original size:22 final size:22
Alignment explanation
Indices: 384487--384531 Score: 72
Period size: 22 Copynumber: 2.0 Consensus size: 22
384477 CAATTCTCAC
* *
384487 GTAAATAAGTTTTTTATCGAAA
1 GTAAATAAGTTGTTAATCGAAA
384509 GTAAATAAGTTGTTAATCGAAA
1 GTAAATAAGTTGTTAATCGAAA
384531 G
1 G
384532 ACCAAAAAAC
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.42, C:0.04, G:0.18, T:0.36
Consensus pattern (22 bp):
GTAAATAAGTTGTTAATCGAAA
Found at i:387683 original size:214 final size:214
Alignment explanation
Indices: 387178--388193 Score: 1211
Period size: 214 Copynumber: 4.7 Consensus size: 214
387168 GATCGTATCA
* * * *
387178 TCTTCAATACTTTAAGGAATTGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTTGAAAGTT
1 TCTTGAATACTTTAAGGAACTGAAGTTATAAAAGAACTC-TAAAAG-TTGACAAGTTCGGAAGTT
* * * * *
387243 CATCCAAGAACCAATAGAGAAACAATTCTCATGTAAATAAGTTTTTTATT-AGAAGACCAAAACT
64 CGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTGA-AAGACCAAAAGT
* * ** * * *
387307 TGTTTAGAAAATGACAAACTATTTACACCAAATGATATGATTTCCCGAGCTTGAAATGTTCAGAA
128 TGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCAGAGCATGGAATGTTCAGAA
* * *
387372 AATTTCTCAAATGAATGGATCG
193 AATTGCTCGAAGGAATGGATCG
* * * * *
387394 TCTTGAATACTCTAAGGAACCGAAGTTATAAAAGCACTCTAAAAGTGTTACAAATTCGGAAGTTC
1 TCTTGAATACTTTAAGGAACTGAAGTTATAAAAGAACTCTAAAAGT-TGACAAGTTCGGAAGTTC
* * * *
387459 GTCTAAGAACCAAGAGAGAAACAATTCTCACAT-AATAAGTTTTTAATTCAAAGACGAAAAGTTG
65 GTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTGAAAGACCAAAAGTTG
* *
387523 TTTACAAAATGACAAACTCTTTAGACCAAATGATGCGA-TTCCAGAGCATGGAATGTTTAGAAAA
130 TTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCAGAGCATGGAATGTTCAGAAAA
*
387587 TTGCTCGAAGGAATGGATTG
195 TTGCTCGAAGGAATGGATCG
* * *
387607 CCTTGAATACTTTAAGGAACTGAAGTTATAAAAGAACTCATAAAAGATTGACAAGTTCGGGAGAT
1 TCTTGAATACTTTAAGGAACTGAAGTTATAAAAGAACTC-TAAAAG-TTGACAAGTTCGGAAGTT
* *
387672 CGTCCAAGAACCAAGAGAGAAACAATTCTCACTTAAATAAGTTTTTAATTTAAAGACCAAAAGTT
64 CGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTGAAAGACCAAAAGTT
* * * * * * *
387737 GTTTAGAAAATGACAAACTATTTAGACAAAATGTTGTGATTTCCCGAGCA-GTGAATTTTCGGAA
129 GTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCAGAGCATG-GAATGTTCAGAA
* * *
387801 AATTACTCTAATGAATGGATCG
193 AATTGCTCGAAGGAATGGATCG
* *
387823 TCTTGAATACTTTAAGGAA-TCATAGTTATAAAAGAACTCTAAAAGTTTGACAAGTTCGG-AGAT
1 TCTTGAATACTTTAAGGAACTGA-AGTTATAAAAGAACTCTAAAAG-TTGACAAGTTCGGAAGTT
* *
387886 CGTCCAAGAACCAACAGAGAAACAATTCTCACGTAAATAAGTTTTTGATTGAAAGACCAAAAGTT
64 CGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTGAAAGACCAAAAGTT
* * *
387951 GTTTACAAAATGACAAGCTATTTACACCAAATGATGCGATTTCCCA-AGCATGGAATGTTCGGAA
129 GTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTT-CCAGAGCATGGAATGTTCAGAA
* * * *
388015 AATAGCTTGAAGGAATGAATCA
193 AATTGCTCGAAGGAATGGATCG
* * * ** *
388037 TGTTGAATACTTTAAGGAACTGAAGTTATAAAAGAACTCGTAAAAGTTAAACAGGTTCAAAATTT
1 TCTTGAATACTTTAAGGAACTGAAGTTATAAAAGAACTC-TAAAAGTT-GACAAGTTCGGAAGTT
* * * * * *
388102 CATCCAAGAACCAAGAGATAGACAATTCTGATGT-AATAAGTTTTTAATTGAAAGACCGAAAAAC
64 CGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTGAAAGACC--AAAAG
* *
388166 TTCTTTACATAATGACAAACTATTTAGA
127 TTGTTTACAAAATGACAAACTATTTAGA
388194 TGAAATCATG
Statistics
Matches: 687, Mismatches: 97, Indels: 31
0.84 0.12 0.04
Matches are distributed among these distances:
213 73 0.11
214 278 0.40
215 174 0.25
216 134 0.20
217 28 0.04
ACGTcount: A:0.41, C:0.14, G:0.17, T:0.28
Consensus pattern (214 bp):
TCTTGAATACTTTAAGGAACTGAAGTTATAAAAGAACTCTAAAAGTTGACAAGTTCGGAAGTTCG
TCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTGAAAGACCAAAAGTTGT
TTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCAGAGCATGGAATGTTCAGAAAAT
TGCTCGAAGGAATGGATCG
Found at i:387982 original size:429 final size:428
Alignment explanation
Indices: 387183--388193 Score: 1376
Period size: 429 Copynumber: 2.4 Consensus size: 428
387173 TATCATCTTC
* *
387183 AATACTTTAAGGAATTGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTTGAAAGTTCATCC
1 AATACTTTAAGGAACTGAAGTTATAAAAGAACTCGTAAAAG-TTGACAAGTTCGAAAGTTCATCC
* *
387248 AAGAACCAATAGAGAAACAATTCTCATGTAAATAAGTTTTTTA-TTAGAAGACCAAAACTTGTTT
65 AAGAACCAAGAGAGAAACAATTCTCATGTAAATAAGTTTTTAATTTA-AAGACCAAAACTTGTTT
* * * *
387312 AGAAAATGACAAACTATTTACACCAAATGATATGATTTCCCGAGCTTGAAATGTTCAGAAAATTT
129 AGAAAATGACAAACTATTTAGACAAAATGATATGATTTCCCGAGCGTGAAATGTTCAGAAAATTA
*
387377 CTCAAATGAATGGATCGTCTTGAATACTCTAAGGAACCGAAGTTATAAAAGCACTCTAAAAGTGT
194 CTCAAATGAATGGATCGTCTTGAATACTCTAAGGAACCGAAGTTATAAAAGAACTCTAAAAGTGT
* * *
387442 TACAAATTCGGAAGTTCGTCTAAGAACCAAGAGAGAAACAATTCTCACATAATAAGTTTTTAATT
259 TACAAATTCGGAAGATCGTCCAAGAACCAACAGAGAAACAATTCTCACATAATAAGTTTTTAATT
* * *
387507 CAAAGACGAAAAGTTGTTTACAAAATGACAAACTCTTTAGACCAAATGATGCGA-TT-CCAGAGC
324 CAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTACACCAAATGATGCGATTTCCCA-AGC
* * *
387570 ATGGAATGTTTAGAAAATTGCTCGAAGGAATGGAT-TGCCTTG
388 ATGGAATGTTCAGAAAATAGCTCGAAGGAATGAATATG--TTG
* ** * *
387612 AATACTTTAAGGAACTGAAGTTATAAAAGAACTCATAAAAGATTGACAAGTTCGGGAGATCGTCC
1 AATACTTTAAGGAACTGAAGTTATAAAAGAACTCGTAAAAG-TTGACAAGTTCGAAAGTTCATCC
*
387677 AAGAACCAAGAGAGAAACAATTCTCACT-TAAATAAGTTTTTAATTTAAAGACCAAAAGTTGTTT
65 AAGAACCAAGAGAGAAACAATTCTCA-TGTAAATAAGTTTTTAATTTAAAGACCAAAACTTGTTT
* * * *
387741 AGAAAATGACAAACTATTTAGACAAAATGTTGTGATTTCCCGAGCAGTG-AATTTTCGGAAAATT
129 AGAAAATGACAAACTATTTAGACAAAATGATATGATTTCCCGAGC-GTGAAATGTTCAGAAAATT
* * *
387805 ACTCTAATGAATGGATCGTCTTGAATACTTTAAGGAATC-ATAGTTATAAAAGAACTCTAAAAGT
193 ACTCAAATGAATGGATCGTCTTGAATACTCTAAGGAACCGA-AGTTATAAAAGAACTCTAAAAGT
* *
387869 -TTGACAAGTTCGG-AGATCGTCCAAGAACCAACAGAGAAACAATTCTCACGTAAATAAGTTTTT
257 GTT-ACAAATTCGGAAGATCGTCCAAGAACCAACAGAGAAACAATTCTCACAT-AATAAGTTTTT
* * *
387932 GATTGAAAGACCAAAAGTTGTTTACAAAATGACAAGCTATTTACACCAAATGATGCGATTTCCCA
320 AATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTACACCAAATGATGCGATTTCCCA
* *
387997 AGCATGGAATGTTCGGAAAATAGCTTGAAGGAATGAATCATGTTG
385 AGCATGGAATGTTCAGAAAATAGCTCGAAGGAATGAAT-ATGTTG
* * * *
388042 AATACTTTAAGGAACTGAAGTTATAAAAGAACTCGTAAAAGTTAAACAGGTTCAAAATTTCATCC
1 AATACTTTAAGGAACTGAAGTTATAAAAGAACTCGTAAAAGTT-GACAAGTTCGAAAGTTCATCC
* * * * *
388107 AAGAACCAAGAGATAGACAATTCTGATGT-AATAAGTTTTTAATTGAAAGACCGAAAAACTTCTT
65 AAGAACCAAGAGAGAAACAATTCTCATGTAAATAAGTTTTTAATTTAAAGACC--AAAACTTGTT
* *
388171 TACATAATGACAAACTATTTAGA
128 TAGAAAATGACAAACTATTTAGA
388194 TGAAATCATG
Statistics
Matches: 512, Mismatches: 56, Indels: 26
0.86 0.09 0.04
Matches are distributed among these distances:
428 37 0.07
429 320 0.62
430 121 0.24
431 32 0.06
432 2 0.00
ACGTcount: A:0.41, C:0.14, G:0.17, T:0.28
Consensus pattern (428 bp):
AATACTTTAAGGAACTGAAGTTATAAAAGAACTCGTAAAAGTTGACAAGTTCGAAAGTTCATCCA
AGAACCAAGAGAGAAACAATTCTCATGTAAATAAGTTTTTAATTTAAAGACCAAAACTTGTTTAG
AAAATGACAAACTATTTAGACAAAATGATATGATTTCCCGAGCGTGAAATGTTCAGAAAATTACT
CAAATGAATGGATCGTCTTGAATACTCTAAGGAACCGAAGTTATAAAAGAACTCTAAAAGTGTTA
CAAATTCGGAAGATCGTCCAAGAACCAACAGAGAAACAATTCTCACATAATAAGTTTTTAATTCA
AAGACCAAAAGTTGTTTACAAAATGACAAACTATTTACACCAAATGATGCGATTTCCCAAGCATG
GAATGTTCAGAAAATAGCTCGAAGGAATGAATATGTTG
Found at i:388591 original size:48 final size:48
Alignment explanation
Indices: 388517--388641 Score: 178
Period size: 48 Copynumber: 2.6 Consensus size: 48
388507 TATTTATGCT
*
388517 TCATTAAGTGTTTTTTTTTTGTTAAATGCATCTTTGTTTAATAATCTGCA
1 TCATTAAGTG--TTTTGTTTGTTAAATGCATCTTTGTTTAATAATCTGCA
* * *
388567 TCATTAAGTGTTTTGTTTCTTAAATGCATCTTTGTTTAGTAATTTGCA
1 TCATTAAGTGTTTTGTTTGTTAAATGCATCTTTGTTTAATAATCTGCA
* *
388615 TTATTAACTGTTTTGTTTGTTAAATGC
1 TCATTAAGTGTTTTGTTTGTTAAATGC
388642 TTTGTTAAAT
Statistics
Matches: 68, Mismatches: 7, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
48 58 0.85
50 10 0.15
ACGTcount: A:0.23, C:0.10, G:0.14, T:0.54
Consensus pattern (48 bp):
TCATTAAGTGTTTTGTTTGTTAAATGCATCTTTGTTTAATAATCTGCA
Found at i:390064 original size:15 final size:15
Alignment explanation
Indices: 390027--390055 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
390017 GCTTGGAAGA
390027 TGCGAGCATTGGTGC
1 TGCGAGCATTGGTGC
390042 TGCGAGCATTGGTG
1 TGCGAGCATTGGTG
390056 TTGTGAGCAC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.14, C:0.17, G:0.41, T:0.28
Consensus pattern (15 bp):
TGCGAGCATTGGTGC
Found at i:391758 original size:166 final size:172
Alignment explanation
Indices: 391557--391891 Score: 412
Period size: 178 Copynumber: 1.9 Consensus size: 172
391547 ATAGGAATCA
*
391557 AAGTTATAAAAGAACTTGCAAAAGTTTGTCAAGTTTGGAAG-TTCG-G-C-CATG-AAAGAGAGA
1 AAGTTATAAAAGAACTCGCAAAAGTTTGTCAAGTTTGGAAGTTTCGAGTCACATGAAAAGAGAGA
* * * * * * * * * *
391617 AACAATCCTCATGTAAATATGTTTTTAA-TTCAAAGACCAAAAGTTGTGTACAAAATGACAAACT
66 AACAATCCTCACGTAAATAAGTGTTTAAGATAAAAGAACAAAAGTAGTATACAAAATGAAAAAAT
*
391681 ATTTAGACCAGATGATGCAATTTCCCAAGCATGGAAAGTTCG
131 ATTTAGACCAAATGATGCAATTTCCCAAGCATGGAAAGTTCG
* * * *
391723 AAGTTATAAAAGGACTCGTAAAAGTTTGTCAAGTTTGGAAGTTTTGAAGTTCGACCTGAACAAAA
1 AAGTTATAAAAGAACTCGCAAAAGTTTGTCAAGTTTGGAAGTTTCG-AG-TC-ACATG---AAAA
* *
391788 GAGAGAAACAATGCTCACGTAAATAAGTGTTTAAGATAAAAGAACAAAAGTAGTATGCAAAATGA
60 GAGAGAAACAATCCTCACGTAAATAAGTGTTTAAGATAAAAGAACAAAAGTAGTATACAAAATGA
391853 AAAAATATTTAGACCAAATGATGCAATTTCCCAAGCATG
125 AAAAATATTTAGACCAAATGATGCAATTTCCCAAGCATG
391892 AAATTCTCAA
Statistics
Matches: 139, Mismatches: 18, Indels: 12
0.82 0.11 0.07
Matches are distributed among these distances:
166 38 0.27
167 3 0.02
169 1 0.01
171 1 0.01
173 3 0.02
177 33 0.24
178 60 0.43
ACGTcount: A:0.42, C:0.13, G:0.19, T:0.26
Consensus pattern (172 bp):
AAGTTATAAAAGAACTCGCAAAAGTTTGTCAAGTTTGGAAGTTTCGAGTCACATGAAAAGAGAGA
AACAATCCTCACGTAAATAAGTGTTTAAGATAAAAGAACAAAAGTAGTATACAAAATGAAAAAAT
ATTTAGACCAAATGATGCAATTTCCCAAGCATGGAAAGTTCG
Found at i:392080 original size:216 final size:215
Alignment explanation
Indices: 391769--393445 Score: 1763
Period size: 216 Copynumber: 7.8 Consensus size: 215
391759 GGAAGTTTTG
* * * * * * *
391769 AAGTTCGACC-TGAACAAAAGAGAGAAACAATGCTCACGTAAATAAGTGTTTAAGATAAAAGAAC
1 AAGTTCGACCGTGAAC-CAAGAGAGAAACAATTCTCACCTAAATAAGTTTTTAA-TTCAAAGACC
* * * * *
391833 AAAAGTAGTATGCAAAATGAAAAAATATTTAGACCAAATGATGCAATTTCCCAAGCATGAAATTC
64 AAAAGTTGTATGCAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGAAATT-
* * * * ** * *
391898 TCAAAAAATTGCTCAAAGGAAAGGATC-TCCTTGAATATTTTAAAAAATTGGAGTTATACAAGAA
128 TCAAAAAATTGCACGAAGGAATGGATCGT-CTTGAATACTTTAAGGAATCGAAGTTATACAAGAA
* * * *
391962 CTTATAAAGGATTT-TTAGGTTCGA
192 CTTGTAAAAG-TTTGTCAAGTTCGA
** * * *
391986 AAGTTCGGGCGTTAACAAAGATAGAAACAATTCTCACCTAAATAAGTTTTTAATTCAAAGACCAA
1 AAGTTCGACCGTGAACCAAGAGAGAAACAATTCTCACCTAAATAAGTTTTTAATTCAAAGACCAA
* ** * *
392051 AAGTTGTGTAAAAAATGAAAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAAAGTTC
66 AAGTTGTATGCAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCAT-GAAATTTC
* * * ** *
392116 AAACAATTGCTCCAAGGAATGGATCGTCTTGAATACTTTAAGGAATAAAAGTTATA-AAGGAACC
130 AAAAAATTGCACGAAGGAATGGATCGTCTTGAATACTTTAAGGAATCGAAGTTATACAA-GAACT
* * *
392180 TATAAAAGTTTGACAAGTTCGG
194 TGTAAAAGTTTGTCAAGTTCGA
* ** * * *
392202 GAGTTCGACCAAGAGCCAAGAGAGAAATAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAA
1 AAGTTCGACCGTGAACCAAGAGAGAAACAATTCTCACCTAAATAAGTTTTTAATTCAAAGACCAA
* * * * * * *
392267 AAGTTTTATGCAAAATGACAAACTCTTTAGACCAACTGATGTGATTTCCCGCGCACGAAATGATC
66 AAGTTGTATGCAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGAAAT-TTC
* * *
392332 AAAAAATTTCACGAAGGAATGGATCGTCTTGAATATTTTAAGGAACCGAAGTTATACAAGAACTT
130 AAAAAATTGCACGAAGGAATGGATCGTCTTGAATACTTTAAGGAATCGAAGTTATACAAGAACTT
*
392397 GTAAAATTTTGTCAAGTTC-A
195 GTAAAAGTTTGTCAAGTTCGA
** *
392417 GAAGTTCGACCAAGATCCAAGAGAGAAACAATTCTCACCTAAATAAGTTTTTAATTCAAAGACCA
1 -AAGTTCGACCGTGAACCAAGAGAGAAACAATTCTCACCTAAATAAGTTTTTAATTCAAAGACCA
* * * * *
392482 GAAGTTGTTTACAAAATGACAAACTATTGA-AGCCAAATGATGCTATTTCCCGAGCATGAAATGT
65 AAAGTTGTATGCAAAATGACAAACTATTTAGA-CCAAATGATGCGATTTCCCGAGCATGAAAT-T
* * *
392546 TCGAAAAATTGCACGAAGGAATGGATTGTCTTGAATATTTTAAGGAA-CTGAAGTTATACAAGAA
128 TCAAAAAATTGCACGAAGGAATGGATCGTCTTGAATACTTTAAGGAATC-GAAGTTATACAAGAA
392610 CTTGTAAAAAGTTTGTCAAGTTCGA
192 CTTGT-AAAAGTTTGTCAAGTTCGA
** * *
392635 AAGTTCGGTCGTGAACCAGGAGAGAAACAATTCTCACCTAAATAAGTTCTTAATTCAAAGACCAA
1 AAGTTCGACCGTGAACCAAGAGAGAAACAATTCTCACCTAAATAAGTTTTTAATTCAAAGACCAA
* * * *
392700 AAGTTTTATGCAAAATGACAAACTATTTTAGACCAAATGATGTGATTTCCCGCGCATG-GATTGA
66 AAGTTGTATGCAAAATGACAAACTA-TTTAGACCAAATGATGCGATTTCCCGAGCATGAAATT--
* * * *
392764 TCGAAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAATCGAAATTATAAAAGAAC
128 TCAAAAAATTGCACGAAGGAATGGATCGTCTTGAATACTTTAAGGAATCGAAGTTATACAAGAAC
* * *
392829 -TGTAAATGTTTGTCAAGTTTGG
193 TTGTAAAAGTTTGTCAAGTTCGA
* * * * * * * * *
392851 AAGTTCGGCCATAAACCAAGAGAGAAACAATTCTCACGTAGATATGTGTTTAAAATAAAAGACCA
1 AAGTTCGACCGTGAACCAAGAGAGAAACAATTCTCACCTAAATAAGT-TTTTAATTCAAAGACCA
* ** ** * * *
392916 AAAGTAGTATGCAAAATGACAAAAAATTTAGATGAAATGATGCAATTTCCTGAGCATGGAATGTT
65 AAAGTTGTATGCAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGAAAT-TT
* * *
392981 CAAAAAATTGCACGAAGGAATGGATCGTCTTGAATA---TAAGGAACCAAATTTATACAAGAACT
129 CAAAAAATTGCACGAAGGAATGGATCGTCTTGAATACTTTAAGGAATCGAAGTTATACAAGAACT
* *
393043 TGTAAAAGTTTGTAAAGTTTGA
194 TGTAAAAGTTTGTCAAGTTCGA
* *
393065 AAGTTCGATCGTGAACCAAGAGAGAAACAATTCTCACCTAAATAAGTTTTTAAATTCATAGA-CA
1 AAGTTCGACCGTGAACCAAGAGAGAAACAATTCTCACCTAAATAAGTTTTT-AATTCAAAGACCA
*
393129 CAAAGTT-TATGCAAAATGACAAACTATTTAGACCAAATGATGTGATTTCCC-ACGCATGAAATG
65 -AAAGTTGTATGCAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGA-GCATGAAAT-
* * * * *
393192 ATCGAAAAATTGCACGAAGGAAT-TAGTCGTCTTAAATACTTTAAGGAATCGAAGTTATAAAAGA
127 TTCAAAAAATTGCACGAAGGAATGGA-TCGTCTTGAATACTTTAAGGAATCGAAGTTATACAAGA
* * * * *
393256 AGTCGTAAAAGTTTGTAAAGTTTGG
191 ACTTGTAAAAGTTTGTCAAGTTCGA
* * * ** *
393281 AAGTTCGACCGTGAACCAATAAAGAAACAAATCTCATGTAAATAAGTTTTTAATTCAAAAACCAA
1 AAGTTCGACCGTGAACCAAGAGAGAAACAATTCTCACCTAAATAAGTTTTTAATTCAAAGACCAA
* * * *
393346 AAGTT-T-TGCATAAAATTACGAACTATTTAGACCAAATGATGCGATTTCCTGAGAATTG-AATG
66 AAGTTGTATGC--AAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCA-TGAAAT-
* * **
393408 TTCAAAAAATTGCTCGAAAGAATGGATAATCTTGAATA
127 TTCAAAAAATTGCACGAAGGAATGGATCGTCTTGAATA
393446 GTTGATACGA
Statistics
Matches: 1230, Mismatches: 196, Indels: 69
0.82 0.13 0.05
Matches are distributed among these distances:
212 2 0.00
213 104 0.08
214 74 0.06
215 26 0.02
216 742 0.60
217 190 0.15
218 90 0.07
219 2 0.00
ACGTcount: A:0.41, C:0.14, G:0.18, T:0.27
Consensus pattern (215 bp):
AAGTTCGACCGTGAACCAAGAGAGAAACAATTCTCACCTAAATAAGTTTTTAATTCAAAGACCAA
AAGTTGTATGCAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGAAATTTCA
AAAAATTGCACGAAGGAATGGATCGTCTTGAATACTTTAAGGAATCGAAGTTATACAAGAACTTG
TAAAAGTTTGTCAAGTTCGA
Found at i:393443 original size:863 final size:864
Alignment explanation
Indices: 391788--393445 Score: 2061
Period size: 863 Copynumber: 1.9 Consensus size: 864
391778 CTGAACAAAA
*
391788 GAGAGAAACAATGCTCACGTAAATAAGTGTTTAAGATAAAAGAACAAAAGTAGTATGCAAAATGA
1 GAGAGAAACAATGCTCACCTAAATAAGTGTTTAAGATAAAAGAACAAAAGTAGTATGCAAAATGA
*
391853 AAAAATATTTAGACCAAATGATGCAATTTCCCAAGCATGAAATTCTCAAAAAATTGCTCAAAGGA
66 AAAAATATTTAGACCAAATGATGCAATTTCCCAAGCATGAAATTATCAAAAAATTGCTCAAAGGA
* * * * * * *
391918 AAGGATCTCCTTGAATATTTTAAAAAATTGGAGTTATACAAGAACTTATAAAGGATTTTTAGGTT
131 AAGGATCTCCTTGAATACTTTAAAAAATCGAAATTATAAAAGAACTTATAAAGGATTTTCAAGTT
* * * * * * *
391983 CGAAAGTTCGGGCGTTAACAAAGATAGAAACAATTCTCACCTAAATAAGTTTTTAATTCAAAGAC
196 CGAAAGTTCGGCCATAAACAAAGAGAGAAACAATTCTCACCTAAATAAGTTTTAAAATAAAAGAC
* * * *
392048 CAAAAGTTGTGTAAAAAATGAAAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAAAG
261 CAAAAGTAGTATAAAAAATGAAAAACAATTTAGACCAAATGATGCAATTTCCCGAGCATGGAAAG
* * *
392113 TTCAAACAATTGCTCCAAGGAATGGATCGTCTTGAATACTTTAAGGAATAAAAGTTATAAAGGAA
326 TTCAAAAAATTGCACCAAGGAATGGATCGTCTTGAATA--TTAAGGAACAAAAGTTATAAAGGAA
** * * *
392178 CCTATAAAAGTTTGACAAGTTCGGGAGTTCGACCAAGAGCCAAGAGAGAAATAATTCTCACGTAA
389 CCTATAAAAGTTTGACAAGTTCGAAAGTTCGACCAAGAACCAAGAGAGAAACAATTCTCACCTAA
* *
392243 ATAAGTTTTTAATTCAAAGACCAAAAGTTTTATGCAAAATGACAAACTCTTTAGACCAACTGATG
454 ATAAGTTTTTAATTCAAAGACCAAAAGTTTTATGCAAAATGACAAACTATTTAGACCAAATGATG
* * * * *
392308 TGATTTCCCGCGCACGAAATGATCAAAAAATTTCACGAAGGAATGGATCGTCTTGAATATTTTAA
519 TGATTTCCCACGCACGAAATGATCAAAAAATTGCACGAAGGAATAGATCGTCTTAAATACTTTAA
* * * * *
392373 GGAACCGAAGTTATACAAGAACTTGTAAAATTTTGTCAAGTTCAGAAGTTCGACCAAGATCCAAG
584 GGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGTAAAGTTCAGAAGTTCGACCAAGAACCAAG
* * * * *
392438 AGAGAAACAATTCTCACCTAAATAAGTTTTTAATTCAAAGACCAGAAGTTGTTTACAAAATGACA
649 AAAGAAACAAATCTCACCTAAATAAGTTTTTAATTCAAAAACCAAAAGTTGTTCACAAAATGACA
* * * *
392503 AACTATTGAAGCCAAATGATGCTATTTCCCGAGCATGAAATGTTCGAAAAATTGCACGAAGGAAT
714 AACTATTGAAGCCAAATGATGCGATTTCCCGAGAATGAAATGTTCAAAAAATTGCACGAAAGAAT
**
392568 GGATTGTCTTGAATATTTTAAGGAACTGAAGTTATACAAGAACTTGTAAAAAGTTTGTCAAGTTC
779 GGATAATCTTGAATATTTTAAGGAACTGAAGTTATACAAGAACTTGTAAAAAGTTTGTCAAGTTC
392633 GAAAGTTCGGTCGTGAACCAG
844 GAAAGTTCGGTCGTGAACCAG
* * * * **
392654 GAGAGAAACAATTCTCACCTAAATAAGT-TCTTAA-TTCAAAGACCAAAAGTTTTATGCAAAATG
1 GAGAGAAACAATGCTCACCTAAATAAGTGT-TTAAGATAAAAGAACAAAAGTAGTATGCAAAATG
* * ** ** * * *
392717 ACAAACTATTTTAGACCAAATGATGTGATTTCCCGCGCATG-GATTGATCGAAAAATTGCTCGAA
65 AAAAAATA-TTTAGACCAAATGATGCAATTTCCCAAGCATGAAATT-ATCAAAAAATTGCTCAAA
* ** * *
392781 GGAATGGATCGT-CTTGAATACTTTAAGGAATCGAAATTATAAAAGAAC-TGTAAATG-TTTGTC
128 GGAAAGGATC-TCCTTGAATACTTTAAAAAATCGAAATTATAAAAGAACTTATAAAGGATTT-TC
* * * * * *
392843 AAGTTTGGAAGTTCGGCCATAAACCAAGAGAGAAACAATTCTCACGTAGATATGTGTTTAAAATA
191 AAGTTCGAAAGTTCGGCCATAAACAAAGAGAGAAACAATTCTCACCTAAATAAGT-TTTAAAATA
** ** *
392908 AAAGACCAAAAGTAGTATGCAAAATGACAAAA-AATTTAGATGAAATGATGCAATTTCCTGAGCA
255 AAAGACCAAAAGTAGTATAAAAAATGA-AAAACAATTTAGACCAAATGATGCAATTTCCCGAGCA
* * * *
392972 TGGAATGTTCAAAAAATTGCACGAAGGAATGGATCGTCTTGAATA-TAAGGAACCAAATTTATAC
319 TGGAAAGTTCAAAAAATTGCACCAAGGAATGGATCGTCTTGAATATTAAGGAACAAAAGTTATA-
* * * * **
393036 AA-GAACTTGTAAAAGTTTGTA-AAGTTTGAAAGTTCGATCGTGAACCAAGAGAGAAACAATTCT
383 AAGGAACCTATAAAAGTTTG-ACAAGTTCGAAAGTTCGACCAAGAACCAAGAGAGAAACAATTCT
*
393099 CACCTAAATAAGTTTTTAAATTCATAGA-CACAAAG-TTTATGCAAAATGACAAACTATTTAGAC
447 CACCTAAATAAGTTTTT-AATTCAAAGACCA-AAAGTTTTATGCAAAATGACAAACTATTTAGAC
* *
393162 CAAATGATGTGATTTCCCACGCATGAAATGATCGAAAAATTGCACGAAGGAATTAG-TCGTCTTA
510 CAAATGATGTGATTTCCCACGCACGAAATGATCAAAAAATTGCACGAAGGAA-TAGATCGTCTTA
* * **
393226 AATACTTTAAGGAATCGAAGTTATAAAAGAAGTCGTAAAAGTTTGTAAAGTTTGGAAGTTCGACC
574 AATACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGTAAAGTTCAGAAGTTCGACC
** * **
393291 GTGAACCAATAAAGAAACAAATCTCATGTAAATAAGTTTTTAATTCAAAAACCAAAAGTT-TTGC
639 AAGAACCAAGAAAGAAACAAATCTCACCTAAATAAGTTTTTAATTCAAAAACCAAAAGTTGTT-C
* * * * *
393355 ATAAAATTACGAACTATT-TAGACCAAATGATGCGATTTCCTGAGAATTG-AATGTTCAAAAAAT
703 ACAAAATGACAAACTATTGAAG-CCAAATGATGCGATTTCCCGAGAA-TGAAATGTTCAAAAAAT
*
393418 TGCTCGAAAGAATGGATAATCTTGAATA
766 TGCACGAAAGAATGGATAATCTTGAATA
393446 GTTGATACGA
Statistics
Matches: 667, Mismatches: 110, Indels: 33
0.82 0.14 0.04
Matches are distributed among these distances:
862 4 0.01
863 342 0.51
864 23 0.03
865 85 0.13
866 208 0.31
867 5 0.01
ACGTcount: A:0.41, C:0.14, G:0.18, T:0.27
Consensus pattern (864 bp):
GAGAGAAACAATGCTCACCTAAATAAGTGTTTAAGATAAAAGAACAAAAGTAGTATGCAAAATGA
AAAAATATTTAGACCAAATGATGCAATTTCCCAAGCATGAAATTATCAAAAAATTGCTCAAAGGA
AAGGATCTCCTTGAATACTTTAAAAAATCGAAATTATAAAAGAACTTATAAAGGATTTTCAAGTT
CGAAAGTTCGGCCATAAACAAAGAGAGAAACAATTCTCACCTAAATAAGTTTTAAAATAAAAGAC
CAAAAGTAGTATAAAAAATGAAAAACAATTTAGACCAAATGATGCAATTTCCCGAGCATGGAAAG
TTCAAAAAATTGCACCAAGGAATGGATCGTCTTGAATATTAAGGAACAAAAGTTATAAAGGAACC
TATAAAAGTTTGACAAGTTCGAAAGTTCGACCAAGAACCAAGAGAGAAACAATTCTCACCTAAAT
AAGTTTTTAATTCAAAGACCAAAAGTTTTATGCAAAATGACAAACTATTTAGACCAAATGATGTG
ATTTCCCACGCACGAAATGATCAAAAAATTGCACGAAGGAATAGATCGTCTTAAATACTTTAAGG
AACCGAAGTTATAAAAGAACTCGTAAAAGTTTGTAAAGTTCAGAAGTTCGACCAAGAACCAAGAA
AGAAACAAATCTCACCTAAATAAGTTTTTAATTCAAAAACCAAAAGTTGTTCACAAAATGACAAA
CTATTGAAGCCAAATGATGCGATTTCCCGAGAATGAAATGTTCAAAAAATTGCACGAAAGAATGG
ATAATCTTGAATATTTTAAGGAACTGAAGTTATACAAGAACTTGTAAAAAGTTTGTCAAGTTCGA
AAGTTCGGTCGTGAACCAG
Found at i:395225 original size:19 final size:20
Alignment explanation
Indices: 395196--395234 Score: 62
Period size: 19 Copynumber: 2.0 Consensus size: 20
395186 GTTTTTAATC
*
395196 CAAATATGAAAAGCTATTTA
1 CAAATATGAAAAACTATTTA
395216 CAAA-ATGAAAAACTATTTA
1 CAAATATGAAAAACTATTTA
395235 GACTAAATGA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
19 14 0.78
20 4 0.22
ACGTcount: A:0.54, C:0.10, G:0.08, T:0.28
Consensus pattern (20 bp):
CAAATATGAAAAACTATTTA
Found at i:395292 original size:215 final size:215
Alignment explanation
Indices: 394887--395898 Score: 1099
Period size: 215 Copynumber: 4.7 Consensus size: 215
394877 TTTAGGAACT
* ** * * **
394887 GAAGTTATAAAATAACTCGTAAAAGTTTGACAAGTTCGAAAGTTCGACCAAGAACCAAGAGAGAA
1 GAAGTTATAAAAGAACTCGTAAAAGTTTTTCAAGTTCGGAAGTTCGATCGTGAACCAAGAGAGAA
* * * *
394952 ACAATTCTCACGTAAATAAGTTTTTAATTCAAAGGCAAAAAGTTGTTTACAAAATGACAAACTAT
66 ACAATTCTCACCTAAATAAGTTTTTAATCCAAAGACAAAAAGTTGTGTACAAAATGACAAACTAT
* ** * * * * *
395017 TTAGACCTAATGATGTGATTTTTCGAGTATGGAATGTTCAGAAAAATGCTAGATGGAATGGATCC
131 TTAGACCAAATGATGTGATTTCCCGAGCATGAAATGTTCAGAAAATTGCTCGAAGGAATGGATCC
395082 TCTTGAAAATTTAAGGAA-C
196 TCTTGAAAATTTAAGGAATC
* * * *
395101 GAAATTTATAAAAGAACTCGTAAAAGTTTTTCAAGTTTGGAAGTTCGACCGTGAATCAAGAGAGA
1 G-AAGTTATAAAAGAACTCGTAAAAGTTTTTCAAGTTCGGAAGTTCGATCGTGAACCAAGAGAGA
* ** * * * *
395166 AACAATTCTCACCTAAATAAGTTTTTAATCCAAATATGAAAAGCTATTTACAAAATGAAAAACTA
65 AACAATTCTCACCTAAATAAGTTTTTAATCCAAAGACAAAAAGTTGTGTACAAAATGACAAACTA
* * * * *
395231 TTTAGACTAAATGATGCGATTGCTCGAGCATGAAATGTTTAGAAAATTGCTCGAAGGAATGGATC
130 TTTAGACCAAATGATGTGATTTCCCGAGCATGAAATGTTCAGAAAATTGCTCGAAGGAATGGATC
** *
395296 GACTTGAATATTTGAA-GAA-C
195 CTCTTGAAAATTT-AAGGAATC
* * * * * *
395316 TGAAGTTATACAAGAACTTGT-AAAGCTTTTTCATGTTCAGAAGTTCGGTCGTTAACCAAGAGAG
1 -GAAGTTATAAAAGAACTCGTAAAAG-TTTTTCAAGTTCGGAAGTTCGATCGTGAACCAAGAGAG
* *
395380 AAACAATTCTCACCTAAAT-ATTTTTTAATTCAAAGACCAAAAA-TTGTGTACAAAATGACAAAC
64 AAACAATTCTCACCTAAATAAGTTTTTAATCCAAAGA-CAAAAAGTTGTGTACAAAATGACAAAC
* * * * *
395443 TATTTAGACCAAAGGATGTGATTTCCCGAGCATGAAAAGTT-TGAAACATTACTCAAAGGAATGG
128 TATTTAGACCAAATGATGTGATTTCCCGAGCATGAAATGTTCAGAAA-ATTGCTCGAAGGAATGG
* * *
395507 ATCGTCTTGAATACTTAAGGAATC
192 ATCCTCTTGAAAATTTAAGGAATC
* * * *
395531 GAAGTTATGAAAGAACTAGTAAAAGTTTGTCAAGTTTGGAAGTTCGATCGTGAACCAAGAGAGAA
1 GAAGTTATAAAAGAACTCGTAAAAGTTTTTCAAGTTCGGAAGTTCGATCGTGAACCAAGAGAGAA
* * * * * * * *
395596 ACAATTCTCACGTAAATAAGTGTTTAAGAT-AAAAGACCAAAAGTAGTATGC-AAATGACAAAAT
66 ACAATTCTCACCTAAATAAGT-TTTTA-ATCCAAAGACAAAAAGTTGTGTACAAAATGACAAACT
* * * * * * *
395659 ATTTAGACAAAATGATGCGATTTCCCGGGCATGGAATGCTCAAAAAATTGATCGAAGGAATGGAT
129 ATTTAGACCAAATGATGTGATTTCCCGAGCATGAAATGTTCAGAAAATTGCTCGAAGGAATGGAT
*
395724 CAC-CTTGAATATTTTAAGGAATC
194 C-CTCTTGAA-AATTTAAGGAATC
* * * * * ** *
395747 AAAGTTATACAAGAACTTGTAAGAGTTTTCCAAGTTCCAAAGTTCGATCGTGAACCAAGATAGAA
1 GAAGTTATAAAAGAACTCGTAAAAGTTTTTCAAGTTCGGAAGTTCGATCGTGAACCAAGAGAGAA
*
395812 ACAATTCTCACCTAAATAAGTTTTTTAATCCGAAGACAAAAAGTTGTGTACAAAATGACAAACTA
66 ACAATTCTCACCTAAATAAG-TTTTTAATCCAAAGACAAAAAGTTGTGTACAAAATGACAAACTA
*
395877 TTTAAACCAAATGATGTGATTT
130 TTTAGACCAAATGATGTGATTT
395899 TCTGATATGA
Statistics
Matches: 660, Mismatches: 119, Indels: 35
0.81 0.15 0.04
Matches are distributed among these distances:
213 6 0.01
214 169 0.26
215 329 0.50
216 122 0.18
217 34 0.05
ACGTcount: A:0.41, C:0.14, G:0.18, T:0.28
Consensus pattern (215 bp):
GAAGTTATAAAAGAACTCGTAAAAGTTTTTCAAGTTCGGAAGTTCGATCGTGAACCAAGAGAGAA
ACAATTCTCACCTAAATAAGTTTTTAATCCAAAGACAAAAAGTTGTGTACAAAATGACAAACTAT
TTAGACCAAATGATGTGATTTCCCGAGCATGAAATGTTCAGAAAATTGCTCGAAGGAATGGATCC
TCTTGAAAATTTAAGGAATC
Found at i:396934 original size:48 final size:48
Alignment explanation
Indices: 396874--396992 Score: 168
Period size: 48 Copynumber: 2.5 Consensus size: 48
396864 TTGAACAAAA
* *
396874 CATTTAACAAACAAAACAGTTAATAATGTAGACTACTAAACAAAGATG
1 CATTTAACAAACAAAACACTTAATAATGCAGACTACTAAACAAAGATG
* * * *
396922 CATTTAATAAACAAAACACTTAATGATGCAGATTATTAAACAAAGATG
1 CATTTAACAAACAAAACACTTAATAATGCAGACTACTAAACAAAGATG
*
396970 CATTTAACAAA-AAAAAACTTAAT
1 CATTTAACAAACAAAACACTTAAT
396993 GAAACATAAA
Statistics
Matches: 63, Mismatches: 8, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
47 11 0.17
48 52 0.83
ACGTcount: A:0.53, C:0.13, G:0.08, T:0.25
Consensus pattern (48 bp):
CATTTAACAAACAAAACACTTAATAATGCAGACTACTAAACAAAGATG
Found at i:399581 original size:7 final size:6
Alignment explanation
Indices: 399464--399582 Score: 55
Period size: 6 Copynumber: 19.3 Consensus size: 6
399454 TACCATAACA
* ** *
399464 TCTTTT TCTTGT TCTTTT AT-TTTT TCTTTT TCGCTC TCTTTT TCTTTT
1 TCTTTT TCTTTT TCTTTT -TCTTTT TCTTTT TCTTTT TCTTTT TCTTTT
* * * * * * * *
399512 CCCTCATGT TCTTTT TCTTTT TCTGTT T-TTTT GCATTC TCTCATT T-TTTC
1 ---TCTTTT TCTTTT TCTTTT TCTTTT TCTTTT TCTTTT TCT-TTT TCTTTT
399562 TCTTTT TCTTTT TCTATTT TC
1 TCTTTT TCTTTT TCT-TTT TC
399583 CTCACTCTCT
Statistics
Matches: 80, Mismatches: 24, Indels: 17
0.66 0.20 0.14
Matches are distributed among these distances:
5 6 0.08
6 62 0.77
7 8 0.10
9 4 0.05
ACGTcount: A:0.04, C:0.21, G:0.04, T:0.71
Consensus pattern (6 bp):
TCTTTT
Found at i:404087 original size:21 final size:23
Alignment explanation
Indices: 404063--404105 Score: 63
Period size: 24 Copynumber: 1.9 Consensus size: 23
404053 TTTTTCTTCT
404063 TTCG-ATTTTTT-TTCTTTTTAA
1 TTCGAATTTTTTCTTCTTTTTAA
404084 TTCGAAATTTTTTCTTCTTTTT
1 TTCG-AATTTTTTCTTCTTTTT
404106 TTCAAACTTT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
21 4 0.21
23 7 0.37
24 8 0.42
ACGTcount: A:0.14, C:0.12, G:0.05, T:0.70
Consensus pattern (23 bp):
TTCGAATTTTTTCTTCTTTTTAA
Found at i:404862 original size:51 final size:51
Alignment explanation
Indices: 404801--404938 Score: 131
Period size: 50 Copynumber: 2.7 Consensus size: 51
404791 TGCATGACTT
* *
404801 GATTTAATGATGCAAACTTTAACTAACATGGGAGTTACATAATGCATGAT-AG
1 GATTT-ATGATGCAAACTTTAACTAACATGAGAGTTACATAATCCATG-TCAG
* * * *
404853 GATTTATGATGCATA-TTTAACTTACATGTA-AGTTACTTAATCCATGTCAT
1 GATTTATGATGCAAACTTTAACTAACATG-AGAGTTACATAATCCATGTCAG
* * *
404903 TATATATGATGCAAAC-TTAACTGATCATGAGAGTTA
1 GATTTATGATGCAAACTTTAACT-AACATGAGAGTTA
404939 ATGGATGTCA
Statistics
Matches: 70, Mismatches: 11, Indels: 11
0.76 0.12 0.12
Matches are distributed among these distances:
49 1 0.01
50 46 0.66
51 18 0.26
52 5 0.07
ACGTcount: A:0.36, C:0.12, G:0.16, T:0.36
Consensus pattern (51 bp):
GATTTATGATGCAAACTTTAACTAACATGAGAGTTACATAATCCATGTCAG
Found at i:406260 original size:217 final size:215
Alignment explanation
Indices: 405333--412702 Score: 6318
Period size: 216 Copynumber: 34.4 Consensus size: 215
405323 CTGAATAATA
* * * * *
405333 GAAAAATTGCTCGAAGGAACGGATCTTCTTGAATACTTTAAGGAATTGATGTTATAAAAGAACTA
1 GAAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAATCGAAGTTATAAAAGAACTT
* * * * *
405398 GTAAAAGTTTTTC-AGATTTGGAAGTTCGATCGTGAAACAAGATAGAAACAATTCTCACCTAAAT
66 GTAAAAGTTTGTCAAG-TTCGGAAGTTCGACCGTGAACCAAGAGAGAAACAATTCTCACCTAAAT
* * * * *
405462 AAGTTTTTAATTCAAAGACCAGAAGTTGTGTACAAAATGGCAAACTATTTAGACCAAATGATGCG
130 AAGTTTTTAATTCAAAGACCAAAAGTTGTATGCAAAATGACAAACTATTTAGACCAAATGATGTG
*
405527 ATTTCCCGAGCATGGAAAGTTC
195 ATTTCCC-AGCATGGAATGTTC
* ** * *
405549 -AGAAAATTGCTCGAAGGAATGGGTCGTCTTGAATACTTTAATTAATCAAAGTTATAAAGGAACT
1 GA-AAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAATCGAAGTTATAAAAGAACT
* ** * ** * ** *
405613 TGTAAAAGTTTGACAAGTTCAAAAATTC-AGCCAAGAGCCAAGAGAGAAACAATTCTCATGTAAG
65 TGTAAAAGTTTGTCAAGTTCGGAAGTTCGA-CCGTGAACCAAGAGAGAAACAATTCTCACCTAAA
*
405677 TAAGTTTTTAATTCAAAGACCAAAAGTTTTATGCAAAATGACAAACTATTTAGACCAAATGATGT
129 TAAGTTTTTAATTCAAAGACCAAAAGTTGTATGCAAAATGACAAACTATTTAGACCAAATGATGT
* *
405742 GATTTCCCACGCATGAAATGATC
194 GATTTCCCA-GCATGGAATGTTC
* * * * *
405765 AAAAAATTG-TACGAAGGAATGGATCGTCTTGAAAATTTTAAGGAA-CTGAA-TATGTACAAGAA
1 GAAAAATTGCT-CGAAGGAATGGATCGTCTTGAATACTTTAAGGAATC-GAAGT-TATAAAAGAA
* * * * * * *
405827 TTTCTAAAAGTTTGTCAAGTTTGGAAGTTGGACCGAGATCCAAGAGAGAAAAAATTCTCACCTAA
63 CTTGTAAAAGTTTGTCAAGTTCGGAAGTTCGACCGTGAACCAAGAGAGAAACAATTCTCACCTAA
* * * * * *
405892 ATAAGTTTTTAATTCAAAGACC-AAATTTTTTTTCAAAATGACAAACTATTCAGACCAATTGATG
128 ATAAGTTTTTAATTCAAAGACCAAAAGTTGTATGCAAAATGACAAACTATTTAGACCAAATGATG
* *
405956 CGATTTCCCGAGCATGAAATGTTC
193 TGATTTCCC-AGCATGGAATGTTC
* * * * * * *
405980 GAAAAATTACACGAAGGAATAGATCATCTTGAATATTTTAAGGAACCGAAGTTATACAAGAACTT
1 GAAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAATCGAAGTTATAAAAGAACTT
* * * *
406045 GTAAAGAGTTTGTCAAGTTCGAAAGTTCGATCGTGAACCAAGAGAAAAAAAATTCTCACCTAAAT
66 GTAAA-AGTTTGTCAAGTTCGGAAGTTCGACCGTGAACCAAGAGAGAAACAATTCTCACCTAAAT
* * *
406110 GAGTTTTTAATTCAAAGACCAAAAGTTTTATGTAAAATGACAAACTATTTAGACCAAATGATGTG
130 AAGTTTTTAATTCAAAGACCAAAAGTTGTATGCAAAATGACAAACTATTTAGACCAAATGATGTG
* ** *
406175 ATTTCCCACACACAGAACGATT-
195 ATTTCCCA-GCATGGAATG-TTC
* * * * *
406197 GAGAAATTGCTCAAAGGAATGGATCGTCTTGAATACTTTAAGGAATTGAAGTCATAAAAGAACTC
1 GAAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAATCGAAGTTATAAAAGAACTT
** * * * *
406262 ACAAAAGTTTGTCAAGTTTGGAAGTTC-AGCCATGAACCAAGAGAGAAACAATTATCACGTAAAT
66 GTAAAAGTTTGTCAAGTTCGGAAGTTCGA-CCGTGAACCAAGAGAGAAACAATTCTCACCTAAAT
** * * * * * * * *
406326 CTGTGTTTAAAATAAAAGACCAAAAGTAGTATGCAAAAGGACAAAATATTTAGACTAAATGATGC
130 AAGT-TTTTAATTCAAAGACCAAAAGTTGTATGCAAAATGACAAACTATTTAGACCAAATGATGT
*
406391 GATTTCCCGAGCATGGAATGATC
194 GATTTCCC-AGCATGGAATGTTC
* * * * *
406414 -AGAAAATTGCTCGAAGGAATGGATCGCCTTCAATATTTTAAGGAATCGAAGTTATACATGAACT
1 GA-AAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAATCGAAGTTATAAAAGAACT
* * * * * * * *
406478 AGTAAAAATTTTTCAAGTTCGGGAGTTTGATCATGAACCAAGATAGAAACAATTCTCACCTAAAT
65 TGTAAAAGTTTGTCAAGTTCGGAAGTTCGACCGTGAACCAAGAGAGAAACAATTCTCACCTAAAT
* * * *
406543 AAGTTTTTAATTCAAAGACCAAAAGTTGTGTACAAAATGACAAATTATTTAGACCAAATGATGCG
130 AAGTTTTTAATTCAAAGACCAAAAGTTGTATGCAAAATGACAAACTATTTAGACCAAATGATGTG
** *
406608 ATTTCTTGAGCATGGAAAGTTC
195 ATTTC-CCAGCATGGAATGTTC
* * ** * * *
406630 AAAAAATTGCTCGAAGGAATGGATCGCCTTGAATACTTTAATTAATCAAAGTTATAAAGGAATTT
1 GAAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAATCGAAGTTATAAAAGAACTT
* * * * * ** * *
406695 GTAAAAGTTTGACAAGTTTGGAATTTCGGCC--AAAGCCAAGAGAGAAGTAATTCTTACGTAAAT
66 GTAAAAGTTTGTCAAGTTCGGAAGTTCGACCGTGAA-CCAAGAGAGAAACAATTCTCACCTAAAT
* * * * * *
406758 AAGTTTTTAATTCAACGACCAAAAGTTGTATGTAAAAAGACAAACTATTTAGATCTAATGATGCG
130 AAGTTTTTAATTCAAAGACCAAAAGTTGTATGCAAAATGACAAACTATTTAGACCAAATGATGTG
*
406823 ATTTCACGAGCATGGAAT-TTC
195 ATTTC-CCAGCATGGAATGTTC
* * * *
406844 GAAAAAATGCTCGAAGGATTGGATCGTCTTAAATACTTTAAGGAACCGAAGTTATAAAAGAACTT
1 GAAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAATCGAAGTTATAAAAGAACTT
* * * * * *
406909 GTAAGAGTTT-TCCAAATTCAGAAGTTCGACCGAGATCTAAGAGAGAAACAATTCTCACCTAAAT
66 GTAAAAGTTTGT-CAAGTTCGGAAGTTCGACCGTGAACCAAGAGAGAAACAATTCTCACCTAAAT
* * * * *
406973 AAGTTTTTAATTCAAAAAACAAAAGTTGTATACAAAATGACAAAAT-TTTAGACCAAATGATATG
130 AAGTTTTTAATTCAAAGACCAAAAGTTGTATGCAAAATGACAAACTATTTAGACCAAATGATGTG
* *
407037 ATTTCCTGAGCATGCAATGTTC
195 ATTTCC-CAGCATGGAATGTTC
* * * * *
407059 AAAAAATTGCTCGAAGGAATGGATTGTCTTGAGTTA-TTTAAGGAACCGAAGTTAGAAAAGAACT
1 GAAAAATTGCTCGAAGGAATGGATCGTCTTGA-ATACTTTAAGGAATCGAAGTTATAAAAGAACT
** * ** * * ** * * *
407123 CATAAAAGTTTGACAAGTTTAGAATTTCTACCAAGAACCAAGACAGAAACAATGCTCACGTAAAT
65 TGTAAAAGTTTGTCAAGTTCGGAAGTTCGACCGTGAACCAAGAGAGAAACAATTCTCACCTAAAT
* * * * * * * * * * *
407188 AAGTTTTAAAATCGAAGGCTAAAAGTTATTTACAAAATGAGAAACTGTTTAGACCAAATGATGCG
130 AAGTTTTTAATTCAAAGACCAAAAGTTGTATGCAAAATGACAAACTATTTAGACCAAATGATGTG
*
407253 ATTTCTCGAGC-TGGAATGTTC
195 ATTTC-CCAGCATGGAATGTTC
* * * * * ** **
407274 -AGAAAATTTCTTGAA--AAT---T--TCTCGAAGT--TATAA--AA--GAACTCGT-AAA-ATT
1 GA-AAAATTGCTCGAAGGAATGGATCGTCTTGAA-TACTTTAAGGAATCGAAGTTATAAAAGAAC
* ** *
407323 TTGT-CAAGTTTG-GGAGTTC-G----T---CCGTGAACCAAGAGAGAAACAATTCTCACGTAAA
64 TTGTAAAAGTTTGTCAAGTTCGGAAGTTCGACCGTGAACCAAGAGAGAAACAATTCTCACCTAAA
* * * * * *
407378 TAAGTGTTTAAGATAAAAGACCAAAAGTAGTATGTAAAATGACAAAATATTTAGACCAAATGATG
129 TAAGTTTTTAA-TTCAAAGACCAAAAGTTGTATGCAAAATGACAAACTATTTAGACCAAATGATG
* * *
407443 TGATTTCGCGAGCGTGAAATGTTC
193 TGATTTC-CCAGCATGGAATGTTC
* * * *
407467 G-AAAATTGCTCGATGGAATGGATCATCTTGAATATTTTAAGGAA-CAGAAGTTATACAAGAACT
1 GAAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAATC-GAAGTTATAAAAGAACT
* * * *** *
407530 TGTAAAAGCTTGTCAAGTTCGAAAGTTTGGTTGTGAACCACGAGAGAAACAATTCTCACCTAAAT
65 TGTAAAAGTTTGTCAAGTTCGGAAGTTCGACCGTGAACCAAGAGAGAAACAATTCTCACCTAAAT
* * * *
407595 AAG-TTTTAATTCAAAGACCAAAAGTTGTGTACAAAATAACATACTATTTAGACCAAATGATGTG
130 AAGTTTTTAATTCAAAGACCAAAAGTTGTATGCAAAATGACAAACTATTTAGACCAAATGATGTG
*
407659 ATTTCCC-GCTCATGAAATGTTC
195 ATTTCCCAG--CATGGAATGTTC
* * * * * *
407681 GAAAAA-TGCTGGAAGGAATGGATCATCTAGAATAATTTAAGGAATCAAAGTTATAAAAGAACTC
1 GAAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAATCGAAGTTATAAAAGAACTT
* * * * * * * * *
407745 ATAAAAGTTTATCAAGTTTGGAAGTTCGGTCAG-GAACGAAGAGAGAAACAATTTTCGCCTAAAA
66 GTAAAAGTTTGTCAAGTTCGGAAGTTC-GACCGTGAACCAAGAGAGAAACAATTCTCACCTAAAT
* * * * * *
407809 AAGTTTTGAATGCAAAGACCAAAAGTT-TATTACAAAATGAAAAACTATTTAGATCAAATAATGT
130 AAGTTTTTAATTCAAAGACCAAAAGTTGTA-TGCAAAATGACAAACTATTTAGACCAAATGATGT
* *
407873 GATTTCCCGAGCATGAAATGATC
194 GATTTCCC-AGCATGGAATGTTC
* * *** * *** * * *
407896 GAAAAATTGCTTGAAGGAATAGATAACCTTGAATATTTTAATTTACCGAGGTTATACAAGAACTT
1 GAAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAATCGAAGTTATAAAAGAACTT
* ** ***
407961 GTAAAAGTTTTTCAAGTTCAAAAGTTCGGTAGTGAACC-A-AGAGAAACAATTCTCACCTAAATA
66 GTAAAAGTTTGTCAAGTTCGGAAGTTCGACCGTGAACCAAGAGAGAAACAATTCTCACCTAAATA
* * * * **
408024 TGTTTTTAATTCAAAGACCAAAAGTTGTGTACAAAATGACAAACTATTTAGATCAAATGATGCAA
131 AGTTTTTAATTCAAAGACCAAAAGTTGTATGCAAAATGACAAACTATTTAGACCAAATGATGTGA
* * *
408089 TTTTTCGAGCATGGAAGGTTC
196 -TTTCCCAGCATGGAATGTTC
* * *
408110 GAAAAATTGCTCGAAGGAATGGATCGTCTT-AAAATTTTAAGGAATCAAAGTTATAAAAGAACTT
1 GAAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAATCGAAGTTATAAAAGAACTT
* * *
408174 GTAAAAGTTTGTGAAGTTTGGAAGTTCGACCGTGAACCAAGAGAGAAACAATTCTCACGTAAATA
66 GTAAAAGTTTGTCAAGTTCGGAAGTTCGACCGTGAACCAAGAGAGAAACAATTCTCACCTAAATA
* * * * *
408239 AGTGTTTAAGATAAAAGACCAAAAGTAGTATGCAAAATGACAAAATATTTAGACCAAATGATGTG
131 AGTTTTTAA-TTCAAAGACCAAAAGTTGTATGCAAAATGACAAACTATTTAGACCAAATGATGTG
* * *
408304 ATTTCTCGAGCA-GAAAATGCTC
195 ATTTC-CCAGCATG-GAATGTTC
* * * * * * *
408326 GAAAAATTGCTCAAAGGAATGGATCGCCTTGAATATTTTAACGAACCAAAGTTATATAAGAACTT
1 GAAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAATCGAAGTTATAAAAGAACTT
* * * * * * * **
408391 ATAAAAGTTTTTCAGGTTCAGAAGTTC-AGTCGTGAACCAAGATAGAAATAATTCTTGCCTAAAT
66 GTAAAAGTTTGTCAAGTTCGGAAGTTCGA-CCGTGAACCAAGAGAGAAACAATTCTCACCTAAAT
* ***
408455 AAGTTTTTAATT-AAAGACCAAAAGTTGTATACAAAATGACAAACTATTTAGACCAAATGATACA
130 AAGTTTTTAATTCAAAGACCAAAAGTTGTATGCAAAATGACAAACTATTTAGACCAAATGATGTG
*
408519 ATTTCCCGAGCATGGAAAGTTC
195 ATTTCCC-AGCATGGAATGTTC
* * * * * * *
408541 TAAAAATTGCTCAAAGGAACGGATCATCTTGAATAC-TTAAGGAATCAAAGTTATTAAGGAACTT
1 GAAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAATCGAAGTTATAAAAGAACTT
* * * * ** * * * * *
408605 GTAAAAGTTTGACAAGTTCGAAAGTTTGGCCAAGAGCCAAGAGAGAAATAATACTCACGTAAAAA
66 GTAAAAGTTTGTCAAGTTCGGAAGTTCGACCGTGAACCAAGAGAGAAACAATTCTCACCTAAATA
* * * * * *
408670 AGTTTTCAATTTAAAGACCAAAAGTTTTATACAAAATGGCAAACTATTTAGACCAAATGATGAGA
131 AGTTTTTAATTCAAAGACCAAAAGTTGTATGCAAAATGACAAACTATTTAGACCAAATGATGTGA
* *
408735 TTTCCCACGCATGAAATGATTA
196 TTTCCCA-GCATGGAATG-TTC
* * * * * * *
408757 G-AGAATTGCTCGAAGGAATGAATCATCTTCAATACTTTAAGGAATCGAAGTTATAAAATATCTC
1 GAAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAATCGAAGTTATAAAAGAACTT
* * ** * *
408821 GCAAAAGTTTGTCAAGTTTGGAAGTTCGGTCGTGAACCAAGACAGAAACAATTCTCACATAAATA
66 GTAAAAGTTTGTCAAGTTCGGAAGTTCGACCGTGAACCAAGAGAGAAACAATTCTCACCTAAATA
* * * * * * * * ** *
408886 TGTGTTTAAAATAAAAGACCAAAAGTAGTTTGCTAAATGACAAAATATAGAGACCAAATGATGCG
131 AGT-TTTTAATTCAAAGACCAAAAGTTGTATGCAAAATGACAAACTATTTAGACCAAATGATGTG
* * *
408951 ATTTCCTGAGCTTGGAAAGTTC
195 ATTTCC-CAGCATGGAATGTTC
* * * * * * * *
408973 GAAAAATTGCACGAAGGAATTGATCGTCCTT-AATATTTTGAGTAACCGATGTTATACAAGAACT
1 GAAAAATTGCTCGAAGGAATGGATCGT-CTTGAATACTTTAAGGAATCGAAGTTATAAAAGAACT
* * * * * *
409037 TGTAAAAGCTTGTCAAGTTCGAAAGTTCGATCATGAACCAAGAAAGAAAC-A----CACCTAAAC
65 TGTAAAAGTTTGTCAAGTTCGGAAGTTCGACCGTGAACCAAGAGAGAAACAATTCTCACCTAAAT
* *
409097 AAGTTTTTAATTCAAAGACCAAAAGTTTTATGCAAAATGACAAACTATTTAGACCAAAAGATGTG
130 AAGTTTTTAATTCAAAGACCAAAAGTTGTATGCAAAATGACAAACTATTTAGACCAAATGATGTG
**
409162 ATTTCTCGC-GCATGGAATAATC
195 ATTTC-C-CAGCATGGAATGTTC
* * *
409184 AAAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAATCGAAGTTATAAAATAACTC
1 GAAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAATCGAAGTTATAAAAGAACTT
* * * *
409249 ATAAAAGTTTGTCAAGTTTGGAAGTTCGACCGTGAACCAAGTGAGAAACAATTCTCACGTAAATA
66 GTAAAAGTTTGTCAAGTTCGGAAGTTCGACCGTGAACCAAGAGAGAAACAATTCTCACCTAAATA
* * * * * * *
409314 TGTGTTTAGAATAAAAGACTAAAAGTAGTATGCAAAATGACAAAATATTTAGACCAAATGAT-TC
131 AGTTTTTA-ATTCAAAGACCAAAAGTTGTATGCAAAATGACAAACTATTTAGACCAAATGATGT-
409378 GATTTCCCGAGCATGGAATGTTC
194 GATTTCCC-AGCATGGAATGTTC
* * * ** * *
409401 GGAAAATTGCACTAAGGAATGGAGAGTCTTGAATATTTTAAGGAATCGAAGTTA-AACAAAAACT
1 GAAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAATCGAAGTTATAA-AAGAACT
** ** *
409465 TGTAAAAGTTTGTCAAGTTCGGAAACTCGGTCATGAACCAAGAGAGAAACAATTCTCACCTAAAT
65 TGTAAAAGTTTGTCAAGTTCGGAAGTTCGACCGTGAACCAAGAGAGAAACAATTCTCACCTAAAT
* * * * *
409530 AAGTTTTTAATTAAAAGACCAAAAGTTGTGTACAAAAAGACAAACTATTTAGACCAAATTATGTG
130 AAGTTTTTAATTCAAAGACCAAAAGTTGTATGCAAAATGACAAACTATTTAGACCAAATGATGTG
* *
409595 ATTTCCCGCGCATGGAATGTTT
195 ATTTCCC-AGCATGGAATGTTC
* * * ** * *
409617 GTAAAATTGCTTGAAGGAATGGATCATCTTGAATACTTTAATTAATCAAAGTTATAAAGGAACTT
1 GAAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAATCGAAGTTATAAAAGAACTT
* * * * * *
409682 GTAAATGTTTGACAAGTTCAGAAGTTC-AGCC--AAAGCCAAGAGAGAAATAATTCTCACGTAAA
66 GTAAAAGTTTGTCAAGTTCGGAAGTTCGA-CCGTGAA-CCAAGAGAGAAACAATTCTCACCTAAA
*
409744 TAAGTTTTTAATTCAAAGACCAAAAGTTTTATGCAAAATGACAAACTATTTAGACCAAATGATGT
129 TAAGTTTTTAATTCAAAGACCAAAAGTTGTATGCAAAATGACAAACTATTTAGACCAAATGATGT
*
409809 GATTTCCC-GCACACGGAATGATTC
194 GATTTCCCAG--CATGGAATG-TTC
* * * * *
409833 -AAAAATTG-TATGAAGGAATGGATCATATTGAA-ATTTTAAGGAA-CAGAAGTT-TACAAGAAC
1 GAAAAATTGCT-CGAAGGAATGGATCGTCTTGAATACTTTAAGGAATC-GAAGTTATAAAAGAAC
* * *
409893 TTGGAAAAGTTTGTCAAGTTCGGAAGTTTG-GC-TGAAATCCAAGAGAGAAACAATTCTCACCTA
64 TTGTAAAAGTTTGTCAAGTTCGGAAGTTCGACCGTG-AA-CCAAGAGAGAAACAATTCTCACCTA
* * * * * * * *
409956 AATAAGATTTTAATTCAAAGACCAAAAGTTGTTTACAAAATAAAAAACTATTCAGATCAACTGAT
127 AATAAGTTTTTAATTCAAAGACCAAAAGTTGTATGCAAAATGACAAACTATTTAGACCAAATGAT
* *
410021 GCGATTTCCCAAGCATGAAATGTTC
192 GTGATTTCCC-AGCATGGAATGTTC
* * * * * * *
410046 AAAAAATTGCACGAAGGAATGTATCATCTTGAATATTTTAAGGAACCGAAGTTATACAAGAACTT
1 GAAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAATCGAAGTTATAAAAGAACTT
* **
410111 GTAAAAGTTTGTCAAGTTCGAAAGTTCGATTGTGAACCAAGAGAGAAACAATTCTCACCTAAATA
66 GTAAAAGTTTGTCAAGTTCGGAAGTTCGACCGTGAACCAAGAGAGAAACAATTCTCACCTAAATA
* * * * * * * **
410176 AGTTTTAAAGTCAAAGGCCAAAAGTTATGTACAAAATGACAAACTATTTATACCAAATGATGCAA
131 AGTTTTTAATTCAAAGACCAAAAGTTGTATGCAAAATGACAAACTATTTAGACCAAATGATGTGA
* *
410241 TTTCCCAAGAATGGAAAGTT-
196 TTTCCC-AGCATGGAATGTTC
* * * *
410261 AAGAAAATTACTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAATCGAATTTATAAAAGAACA
1 GA-AAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAATCGAAGTTATAAAAGAACT
** * * ** ** * *
410326 TGTAAAAGTTTGAT-AAGTTTAGAAGTACGGCCAAGAGTCAAGAGAGAAATAATTCTCACGTAAA
65 TGTAAAAGTTTG-TCAAGTTCGGAAGTTCGACCGTGAACCAAGAGAGAAACAATTCTCACCTAAA
* * *
410390 TAAGTTTTTAATTTAAAGATCAAAAGTTGTATGCATAAATGACAAACTATTTAGAGCAAATGATG
129 TAAGTTTTTAATTCAAAGACCAAAAGTTGTATGCA-AAATGACAAACTATTTAGACCAAATGATG
410455 TGATTTCCCTAGCATGGAATGTTC
193 TGATTTCCC-AGCATGGAATGTTC
* * *
410479 -AAAAACTTGCTTGAAGGAATGGATCATCTTGAATACTTTAAGGAA-CCAAGGTTATAAAAGAAC
1 GAAAAA-TTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAATCGAA-GTTATAAAAGAAC
* ** * * ** * *
410542 TTATAAAAGTTTGAGAAGTTTGGAAGTTCAACCAAGATCCAAGAGAGAGACAATTCTCACAC-AA
64 TTGTAAAAGTTTGTCAAGTTCGGAAGTTCGACCGTGAACCAAGAGAGAAACAATTCTCAC-CTAA
* * ** ** *
410606 ATAAGTTTTTAATTCAAGGA-CAAACATTTGT-TAAAAAAATGTTAAACTATTTAGAACAAATGA
128 ATAAGTTTTTAATTCAAAGACCAAA-AGTTGTAT-GCAAAATGACAAACTATTTAGACCAAATGA
* *
410669 TGTGATTTCCCGCGCATGGAATGATC
191 TGTGATTTCCC-AGCATGGAATGTTC
* * * * * *
410695 -AGAAAATTGATCGAAAGAATGGATAGTCTTGAAAACTTTAAGGAATCGAAGGTGTAAAAGAACT
1 GA-AAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAATCGAAGTTATAAAAGAACT
** * * * * *
410759 CATAAAAGTTTGTCAAGTTTGGAAGTTTGGCCGTGAACCAAGAGTGAAACAACTT-TCTA-GTAA
65 TGTAAAAGTTTGTCAAGTTCGGAAGTTCGACCGTGAACCAAGAGAGAAACAA-TTCTC-ACCTAA
* * * ** * * *
410822 ATAAGTGTTTAAAATAAAAGACCAAAAGCAGTATGTAAAATGAAAAAAATATTTAGACCAAATGA
128 ATAAGT-TTTTAATTCAAAGACCAAAAGTTGTATGCAAAATG-ACAAACTATTTAGACCAAATGA
* * *
410887 TGCGATTTTTCGAGCATGGAATGTTC
191 TGTGA-TTTCCCAGCATGGAATGTTC
* * * * *
410913 AAAAAATTGCTCGAAGGAATAGATAGTCTTGAATAATTTAAGGAATCGAAGTTATAAAAGAACTC
1 GAAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAATCGAAGTTATAAAAGAACTT
* * * * * * * * **
410978 GTACAAGTTTTTCAAGTTTGGAAGTTTGGCCATGAACTAAGAGAGAAACAATTCGCAAGTAAATA
66 GTAAAAGTTTGTCAAGTTCGGAAGTTCGACCGTGAACCAAGAGAGAAACAATTCTCACCTAAATA
* * * * * * *
411043 TGTGTTTAAAATAAAAGACCAAAAG-TATATGCAAAATGACAAAATATTTAGACCAAATGTTGTG
131 AGT-TTTTAATTCAAAGACCAAAAGTTGTATGCAAAATGACAAACTATTTAGACCAAATGATGTG
411107 ATTTCCCGAGCATGGAATGTTC
195 ATTTCCC-AGCATGGAATGTTC
* ** * * *
411129 GAAAAATTGCTTGAAGGAATTTATTGTCTTGAATATTTTAAGGAATCGGAGTTAT-AAAGCAACT
1 GAAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAATCGAAGTTATAAAAG-AACT
** ** * *
411193 TGTAAAAGTTTGTCAAGTTCAAAAGTTCGGTCGTGAACCAAGAGATAATCAATTCTCACCTAAAT
65 TGTAAAAGTTTGTCAAGTTCGGAAGTTCGACCGTGAACCAAGAGAGAAACAATTCTCACCTAAAT
* * * *
411258 AAGTTTTTAATTCAAAAACCAAAAGTTGTGTACAAAATGACAACCTATTTAGACCAAATGATGTG
130 AAGTTTTTAATTCAAAGACCAAAAGTTGTATGCAAAATGACAAACTATTTAGACCAAATGATGTG
411323 ATTTACCGCA-CATGGAATGTTC
195 ATTT-CC-CAGCATGGAATGTTC
* ** * * * *
411345 GGAAAATTTATTGAAGGAATGGATGGTCTTGAACACTTTAAGGAATC-ATAGTTATAAAAAAACT
1 GAAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAATCGA-AGTTATAAAAGAACT
* * * * * * *
411409 TGTAAAATTTTGACAAGTTTGGAAGTTCGGCCATGAATC----GAGAAACAATTTTCACCTAAAT
65 TGTAAAAGTTTGTCAAGTTCGGAAGTTCGACCGTGAACCAAGAGAGAAACAATTCTCACCTAAAT
* * ** * *
411470 AAGTTTTTAATTCAAAGACTAAAAGTTGTTTATAAAATGACAAACTATTTAGATCAAATGATATG
130 AAGTTTTTAATTCAAAGACCAAAAGTTGTATGCAAAATGACAAACTATTTAGACCAAATGATGTG
* *
411535 ATTTCTCGAGCATTGAATGTTC
195 ATTTC-CCAGCATGGAATGTTC
* * * * * *
411557 GAAAAA-TGCTCTAAGGAATGGATCGCCTTGAATATTTTAAGGAACCAAAGTTATACAAGAACTT
1 GAAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAATCGAAGTTATAAAAGAACTT
* * *
411621 GTAAAAGTTTGTCAAGTTTGGAAGTTCGACCGTGAACTAAGAGAGAAACAATTCTCACTTAAATA
66 GTAAAAGTTTGTCAAGTTCGGAAGTTCGACCGTGAACCAAGAGAGAAACAATTCTCACCTAAATA
* * * * * * *
411686 AGTGTTTAAGATAAAAGACCAAAAGTAGTATGCAAAATGAAAAAATATTTAGACCAAATGATGCG
131 AGTTTTTAA-TTCAAAGACCAAAAGTTGTATGCAAAATGACAAACTATTTAGACCAAATGATGTG
* *
411751 ATTTACCAAGCATAGAATGTTC
195 ATTT-CCCAGCATGGAATGTTC
* * * * * * *
411773 -AGAAGATTGCTCAAAGGAATGGATCATCTTGAATATTTTAAGGAACCAAAGTTATACAAGAAC-
1 GA-AAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAATCGAAGTTATAAAAGAACT
* * * *** * **
411836 T-AAACAAGTTTGTCAAGTTTGGAAGTTCAACCGTGATTGAAGAGAGAAACAATTTTTGCCTAAA
65 TGTAA-AAGTTTGTCAAGTTCGGAAGTTCGACCGTGAACCAAGAGAGAAACAATTCTCACCTAAA
* * * * * *
411900 TAAGTTTTAAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTGTTAAGATCAAATGATGT
129 TAAGTTTTTAATTCAAAGACCAAAAGTTGTATGCAAAATGACAAACTATTTAGACCAAATGATGT
*
411965 GATTTCTCGAGCATGGAATGTTC
194 GATTTC-CCAGCATGGAATGTTC
* * * * ** *
411988 GAAAAGTTTCTCAAAGGAATGGATTGTCTTGCCTACTTTAAGGAA-CTGAAGTTAAAAAAGAACT
1 GAAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAATC-GAAGTTATAAAAGAACT
* * * * *** * **
412052 CGTAAAAGTTTGACAAGTTCGAAATTTCGACAAAGAACCAAGATAG-AA-AATTCGAAGGCC--A
65 TGTAAAAGTTTGTCAAGTTCGGAAGTTCGACCGTGAACCAAGAGAGAAACAATTCTCA--CCTAA
* * ** * **
412113 A-AAGTTGTTT-A--CAAAATGA-CAAACTGTT-TA-GACCAAATG--ATGCAATTT---CCCGA
128 ATAAGTT-TTTAATTC-AAA-GACCAAA-AGTTGTATG-CAAAATGACAAACTATTTAGACCAAA
** *
412166 -GCATG-GAATTT-TTAG-A--AAATTGCTT-
188 TG-ATGTG-ATTTCCCAGCATGGAA-TG-TTC
* * * *** ** * * * *
412191 GAAGGAATGGATCGTCTTGAAT--A-C-T-TTAAGAA-A-TCGAAGTTATAACAGAACTTGTAAA
1 GAA-AAATTGCTCG-AAGGAATGGATCGTCTT--GAATACTTTAAG-GA-ATC-GAAGTTATAAA
* ** * * * *
412249 AG---TTTTTCAAGTTTG-GAAGTTC----G---G-CCGTGAACTAAAAGAGAAACAATTTTCAC
59 AGAACTTGTAAAAGTTTGTCAAGTTCGGAAGTTCGACCGTGAACCAAGAGAGAAACAATTCTCAC
* * *
412302 CTAAATAAGTTTTCAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAAT
124 CTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTATGCAAAATGACAAACTATTTAGACCAAAT
*
412367 GATGTAATTTCCCGAGCATGGAATGTT-
189 GATGTGATTTCCC-AGCATGGAATGTTC
* * * * * * * *
412394 TAGAAAATTGCTCAAATGAATGGATCGCCTTGAATACTTTAAGGAACCAAAGTTATACAAGAATT
1 GA-AAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAATCGAAGTTATAAAAGAACT
* * * * * * *
412459 TGTAAATGTTTTTCAGGTTCGGAAGTTC-AGTCTTGAACCAAGAGAGAAATAATTCTTACCTAAA
65 TGTAAAAGTTTGTCAAGTTCGGAAGTTCGA-CCGTGAACCAAGAGAGAAACAATTCTCACCTAAA
* * * * * * *
412523 TAAGTTTTTAATTCGAAGACAAAAAATTTGTGTACAAAAGGACAAACTATTTAGATCAAATGATG
129 TAAGTTTTTAATTCAAAGAC-CAAAAGTTGTATGCAAAATGACAAACTATTTAGACCAAATGATG
* * *
412588 TGATTTCCTGAGCATGGAAAGTTT
193 TGATTTCC-CAGCATGGAATGTTC
* * * * * *
412612 GAAAAATTGCTTGAATGAATGAATCGTCTAGAATACTTTAAGGAATCAAAGTTATAAAAGAACGT
1 GAAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAATCGAAGTTATAAAAGAACTT
*
412677 GTAAAAGTTTGACAAGTTCGGAAGTT
66 GTAAAAGTTTGTCAAGTTCGGAAGTT
412703 TGACAGTCAA
Statistics
Matches: 5761, Mismatches: 1152, Indels: 481
0.78 0.16 0.07
Matches are distributed among these distances:
191 51 0.01
192 65 0.01
193 18 0.00
194 15 0.00
195 14 0.00
196 1 0.00
197 7 0.00
198 2 0.00
199 16 0.00
200 36 0.01
201 7 0.00
202 16 0.00
203 31 0.01
204 25 0.00
205 18 0.00
206 9 0.00
207 33 0.01
208 16 0.00
210 8 0.00
211 234 0.04
212 128 0.02
213 109 0.02
214 619 0.11
215 1068 0.19
216 1917 0.33
217 1109 0.19
218 184 0.03
219 5 0.00
ACGTcount: A:0.40, C:0.13, G:0.18, T:0.28
Consensus pattern (215 bp):
GAAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAATCGAAGTTATAAAAGAACTT
GTAAAAGTTTGTCAAGTTCGGAAGTTCGACCGTGAACCAAGAGAGAAACAATTCTCACCTAAATA
AGTTTTTAATTCAAAGACCAAAAGTTGTATGCAAAATGACAAACTATTTAGACCAAATGATGTGA
TTTCCCAGCATGGAATGTTC
Found at i:412250 original size:191 final size:191
Alignment explanation
Indices: 411908--412253 Score: 489
Period size: 191 Copynumber: 1.8 Consensus size: 191
411898 AATAAGTTTT
* ** *
411908 AAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTGTTAAGATCAAATGATGTGATTTCTC
1 AAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTGTTAAGACCAAATGATGCAATTTCCC
* * * ** *
411973 GAGCATGGAATGTTCGAAAAGTTTCTCAAAGGAATGGATTGTCTTGCCTACTTTAAGGAACTGAA
66 GAGCATGGAATGTTAGAAAAGTTGCTCAAAGGAATGGATCGTCTTGAATACTTTAAGAAACTGAA
412038 GTTAAAAAAGAACTCGTAAAAGTTTGACAAGTTCGAAATTTCGACAAAGAACCAAGATAGA
131 GTTAAAAAAGAACTCGTAAAAGTTTGACAAGTTCGAAATTTCGACAAAGAACCAAGATAGA
* * *
412099 AAATTCGAAGGCCAAAAGTTGTTTACAAAATGACAAACTGTTTAGACCAAATGATGCAATTTCCC
1 AAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTGTTAAGACCAAATGATGCAATTTCCC
* **
412164 GAGCATGGAATTTTTAGAAAA-TTGCTTGAAGGAATGGATCGTCTTGAATACTTTAAGAAA-TCG
66 GAGCATGGAA-TGTTAGAAAAGTTGCTCAAAGGAATGGATCGTCTTGAATACTTTAAGAAACT-G
* * *
412227 AAGTTATAACAGAACTTGTAAAAGTTT
129 AAGTTAAAAAAGAACTCGTAAAAGTTT
412254 TTCAAGTTTG
Statistics
Matches: 134, Mismatches: 19, Indels: 4
0.85 0.12 0.03
Matches are distributed among these distances:
190 1 0.01
191 125 0.93
192 8 0.06
ACGTcount: A:0.40, C:0.13, G:0.19, T:0.28
Consensus pattern (191 bp):
AAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTGTTAAGACCAAATGATGCAATTTCCC
GAGCATGGAATGTTAGAAAAGTTGCTCAAAGGAATGGATCGTCTTGAATACTTTAAGAAACTGAA
GTTAAAAAAGAACTCGTAAAAGTTTGACAAGTTCGAAATTTCGACAAAGAACCAAGATAGA
Found at i:413364 original size:74 final size:75
Alignment explanation
Indices: 413238--413388 Score: 259
Period size: 74 Copynumber: 2.0 Consensus size: 75
413228 CTTTACAAAA
* * *
413238 TGAAAGTGAACAGCCATCATTTATCATTCATAAATGAATGTGTTGATTCATTT-AAAAACTCTTG
1 TGAAAGTGAACAACCATCATTCATCATTCATAAATGAATGTGTTGATTCATTTGAAAAACTATTG
413302 AATGAAACAT
66 AATGAAACAT
*
413312 TGAATGTGAACAACCATCATTCATCATTCATAAATGAATGTGTTGATTCATTTGAAAAACTATTG
1 TGAAAGTGAACAACCATCATTCATCATTCATAAATGAATGTGTTGATTCATTTGAAAAACTATTG
413377 AATGAAACAT
66 AATGAAACAT
413387 TG
1 TG
413389 TGATGTGAGC
Statistics
Matches: 72, Mismatches: 4, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
74 50 0.69
75 22 0.31
ACGTcount: A:0.39, C:0.13, G:0.14, T:0.34
Consensus pattern (75 bp):
TGAAAGTGAACAACCATCATTCATCATTCATAAATGAATGTGTTGATTCATTTGAAAAACTATTG
AATGAAACAT
Found at i:415528 original size:18 final size:19
Alignment explanation
Indices: 415500--415539 Score: 64
Period size: 18 Copynumber: 2.2 Consensus size: 19
415490 TCAATGTGAG
*
415500 TGCTCGCAACATGAGTGTT
1 TGCTCGCAACATGAGTGCT
415519 TGCT-GCAACATGAGTGCT
1 TGCTCGCAACATGAGTGCT
415537 TGC
1 TGC
415540 ATCTTCCATG
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
18 16 0.80
19 4 0.20
ACGTcount: A:0.20, C:0.23, G:0.28, T:0.30
Consensus pattern (19 bp):
TGCTCGCAACATGAGTGCT
Found at i:417757 original size:16 final size:16
Alignment explanation
Indices: 417719--417796 Score: 52
Period size: 16 Copynumber: 4.9 Consensus size: 16
417709 TTCCTCACGC
*
417719 TTTCTTTTTGTTTCAA
1 TTTCTTTTTCTTTCAA
* *
417735 CTT-TTTTTCTTTCAT
1 TTTCTTTTTCTTTCAA
*
417750 TTTCTTTTTCATTCACAA
1 TTTCTTTTTC-TT-TCAA
* ** *
417768 TATC-TTTTCTTGGAC
1 TTTCTTTTTCTTTCAA
417783 TTTCTTTTTCTTTC
1 TTTCTTTTTCTTTC
417797 TCATTTCTCT
Statistics
Matches: 45, Mismatches: 13, Indels: 8
0.68 0.20 0.12
Matches are distributed among these distances:
15 16 0.36
16 17 0.38
17 7 0.16
18 5 0.11
ACGTcount: A:0.12, C:0.19, G:0.04, T:0.65
Consensus pattern (16 bp):
TTTCTTTTTCTTTCAA
Found at i:417957 original size:17 final size:17
Alignment explanation
Indices: 417912--417957 Score: 65
Period size: 18 Copynumber: 2.6 Consensus size: 17
417902 AATTCTTCAC
*
417912 TCTTTTTTCTCTCAAGT
1 TCTTTTTTCTTTCAAGT
*
417929 TCTTTTTCTCTTTCAATT
1 TCTTTTT-TCTTTCAAGT
417947 TCTTTTTTCTT
1 TCTTTTTTCTT
417958 CTCCTTATTT
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
17 11 0.42
18 15 0.58
ACGTcount: A:0.09, C:0.22, G:0.02, T:0.67
Consensus pattern (17 bp):
TCTTTTTTCTTTCAAGT
Found at i:418843 original size:3 final size:3
Alignment explanation
Indices: 418835--418864 Score: 60
Period size: 3 Copynumber: 10.0 Consensus size: 3
418825 CACTTTTATA
418835 CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT
1 CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT
418865 TATATAAATT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 27 1.00
ACGTcount: A:0.00, C:0.33, G:0.00, T:0.67
Consensus pattern (3 bp):
CTT
Found at i:422640 original size:533 final size:533
Alignment explanation
Indices: 421634--422691 Score: 1529
Period size: 533 Copynumber: 2.0 Consensus size: 533
421624 CTAATGATAC
*
421634 GAGTCGCAAGACCCAAATTCAAGCTTATGAATGTGATTGGATCAAAGTTTCTCAAGGCCACATAA
1 GAGTCGCAAGACCCAAATTCAAGCTTATGAATGTGATGGGATCAAAGTTTCTCAAGGCCACATAA
* * *
421699 CGAGGTCAAAGGCCAAGCAAATTCAAGAAAGATTGAAAAAGGACCATCTAAGCCTTTGTTACCAA
66 CGAGGTCAAAGGCCAAGCAAATTCAAGAAAGATTGAAAAAGGACCAACCAAGACTTTGTTACCAA
*
421764 GGCCCTAAATGTGCACACAGCCAAAAAAGAAAATCAAGATTCACTTTATTGATTTCAAGAAAATC
131 GGCCCTAAATGCGCACACAGCCAAAAAAGAAAATCAAGATTCACTTTATTGATTTCAAGAAAATC
** * *
421829 AAGAAAATGAATCTTGGTCCAATTTTTCCATTCCAACAAATTTCAAGAATCAAGAAAATCAAGAT
196 AAGAAAACAAATCTTGGTCCAATTTTTCCATTCCAACAAATTTAAAGAATCAAGAAAATCAAGAA
*
421894 TTCAAATCTTGGAAATCTTGGTCCAAGAAACCAAAGCTGCCAATTTTCATGTTGGGAAATCAGCA
261 TTCAAATCTTGGAAATCTTGGTCCAAGAAACCAAAGCTGCCAATTTTCAAGTTGGGAAATCAGCA
* * *
421959 AACTTGCAACGGCTTTTTGCATGGGATCCAGGAATTTATGGGTTAAGATGTCTGCATGTATTTCT
326 AACTTGCAACGACTTTTTGCATGGGATCCAGGAATTTATGGGCTAAGATGTCTGCATGTATTTCG
* ** * *
422024 AAGATCTATCTCTTATGTTCGAAACGCACTTTGAATCACTTGATTTTAAGTTCAGGATCTCAAGT
391 AAGATCTATCTCTTATCTTCGAAACGCACTTTGAATCACTCAATTTCAAGTTCAGGAGCTCAAGT
* * * * * *
422089 TATGATCGTTTTAATAAAGACTGTGC-AGGTATAATTTTTGGACGTGATTATGACAGGAATTACG
456 TATGATCATTTTAATAAAGACTATGCGA-GCAGAATTTATGGACGTGATTATGACAGGAATTACA
422153 AGTTTCGGTTATAT
520 AGTTTCGGTTATAT
*
422167 GAGTCGCAAGGA-CCAAATTCAAGCTTATGAATGTGATGGGATCAAATTTTCTCAAGGCCTA-AT
1 GAGTCGCAA-GACCCAAATTCAAGCTTATGAATGTGATGGGATCAAAGTTTCTCAAGGCC-ACAT
* * * * *
422230 AATGAGGTCAAAGGCCAAGCAAATTCGAGTAAGATT--AAACGAGACTAACCAAGACTTTGTTAC
64 AACGAGGTCAAAGGCCAAGCAAATTCAAGAAAGATTGAAAAAG-GACCAACCAAGACTTTGTTAC
* * * *
422293 CAAGGCCCTAGATGCGCACACAGCCGAAAAA-AAAATCAAGATTCACTTTCTTGTTTTCAAGAAA
128 CAAGGCCCTAAATGCGCACACAGCCAAAAAAGAAAATCAAGATTCACTTTATTGATTTCAAGAAA
* *
422357 ATCAAGAAACCAAATCTTGGTCCAATTTTTTCATTCCAA-ACAATTTAAAGAATCAAGAAAATCA
193 ATCAAGAAAACAAATCTTGGTCCAATTTTTCCATTCCAACA-AATTTAAAGAATCAAGAAAATCA
* * *
422421 ATAATTCAAATCTTGGAAATCTTGGTCCAA-AAATCGAAGCTGCCAACTTTTTCAAGTTGGGGAA
257 AGAATTCAAATCTTGGAAATCTTGGTCCAAGAAACCAAAGCTGCCAA--TTTTCAAGTT-GGGAA
* * *
422485 ATCAGCAGACTTGCAACGACTTTTTGGATGGGATCCAGGAATTTATGGGCTGAGATGTCTGCATG
319 ATCAGCAAACTTGCAACGACTTTTTGCATGGGATCCAGGAATTTATGGGCTAAGATGTCTGCATG
* * * * **
422550 TATTTCGAATATCTATCTTTTATCTTCGAAACGCACTTTTAATTACTCAATTTCAAGTTTGGGAG
384 TATTTCGAAGATCTATCTCTTATCTTCGAAACGCACTTTGAATCACTCAATTTCAAGTTCAGGAG
* * *
422615 GTCAAGTTATGATTATTTTAATAAAGACTATGCGAGCAGAATTTATGGACGTGATTATGACGGGA
449 CTCAAGTTATGATCATTTTAATAAAGACTATGCGAGCAGAATTTATGGACGTGATTATGACAGGA
422680 ATTACAAGTTTC
514 ATTACAAGTTTC
422692 AAGCTTTTAA
Statistics
Matches: 466, Mismatches: 51, Indels: 16
0.87 0.10 0.03
Matches are distributed among these distances:
530 15 0.03
531 120 0.26
532 54 0.12
533 273 0.59
534 4 0.01
ACGTcount: A:0.35, C:0.17, G:0.19, T:0.29
Consensus pattern (533 bp):
GAGTCGCAAGACCCAAATTCAAGCTTATGAATGTGATGGGATCAAAGTTTCTCAAGGCCACATAA
CGAGGTCAAAGGCCAAGCAAATTCAAGAAAGATTGAAAAAGGACCAACCAAGACTTTGTTACCAA
GGCCCTAAATGCGCACACAGCCAAAAAAGAAAATCAAGATTCACTTTATTGATTTCAAGAAAATC
AAGAAAACAAATCTTGGTCCAATTTTTCCATTCCAACAAATTTAAAGAATCAAGAAAATCAAGAA
TTCAAATCTTGGAAATCTTGGTCCAAGAAACCAAAGCTGCCAATTTTCAAGTTGGGAAATCAGCA
AACTTGCAACGACTTTTTGCATGGGATCCAGGAATTTATGGGCTAAGATGTCTGCATGTATTTCG
AAGATCTATCTCTTATCTTCGAAACGCACTTTGAATCACTCAATTTCAAGTTCAGGAGCTCAAGT
TATGATCATTTTAATAAAGACTATGCGAGCAGAATTTATGGACGTGATTATGACAGGAATTACAA
GTTTCGGTTATAT
Found at i:423131 original size:19 final size:21
Alignment explanation
Indices: 423090--423131 Score: 61
Period size: 19 Copynumber: 2.1 Consensus size: 21
423080 TAATCTATCG
*
423090 TTCTTGCTTGATCTAGTTTAT
1 TTCTTGCTTGATCTAGTTGAT
423111 TTCTTGC-TGAT-TAGTTGAT
1 TTCTTGCTTGATCTAGTTGAT
423130 TT
1 TT
423132 TTGTTCTAGG
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
19 9 0.45
20 4 0.20
21 7 0.35
ACGTcount: A:0.14, C:0.12, G:0.17, T:0.57
Consensus pattern (21 bp):
TTCTTGCTTGATCTAGTTGAT
Found at i:426017 original size:15 final size:15
Alignment explanation
Indices: 425999--426028 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
425989 ATGTGTATCT
*
425999 ACAACATGAGTGCTC
1 ACAACACGAGTGCTC
426014 ACAACACGAGTGCTC
1 ACAACACGAGTGCTC
426029 GCATCTTCCA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.33, C:0.30, G:0.20, T:0.17
Consensus pattern (15 bp):
ACAACACGAGTGCTC
Found at i:430739 original size:25 final size:24
Alignment explanation
Indices: 430703--430749 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 24
430693 AAACAACTTC
430703 TAAAAAAAACTC-AAGAGCAATTCT
1 TAAAAAAAACTCAAAGAG-AATTCT
430727 TAAAGAAAAACTCAAAGAGAATT
1 TAAA-AAAAACTCAAAGAGAATT
430750 ATTATTAACT
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
24 4 0.19
25 12 0.57
26 5 0.24
ACGTcount: A:0.57, C:0.13, G:0.11, T:0.19
Consensus pattern (24 bp):
TAAAAAAAACTCAAAGAGAATTCT
Found at i:437982 original size:18 final size:18
Alignment explanation
Indices: 437937--437988 Score: 56
Period size: 18 Copynumber: 2.9 Consensus size: 18
437927 CACGTTTAAT
437937 TTTTCTCTC-TCTTTTTC
1 TTTTCTCTCATCTTTTTC
437954 TTCCTT-T-TCATCTTTTTC
1 TT--TTCTCTCATCTTTTTC
437972 TTTTCTCTCATTCTTTT
1 TTTTCTCTCA-TCTTTT
437989 CACTTTCTTT
Statistics
Matches: 29, Mismatches: 0, Indels: 10
0.74 0.00 0.26
Matches are distributed among these distances:
16 2 0.07
17 5 0.17
18 14 0.48
19 8 0.28
ACGTcount: A:0.04, C:0.27, G:0.00, T:0.69
Consensus pattern (18 bp):
TTTTCTCTCATCTTTTTC
Found at i:437986 original size:31 final size:29
Alignment explanation
Indices: 437951--438031 Score: 83
Period size: 31 Copynumber: 2.7 Consensus size: 29
437941 CTCTCTCTTT
437951 TTCTTCCTTTTCATCTTTTTCTTTTCTCTCA
1 TTCTTCCTTTTC-T-TTTTTCTTTTCTCTCA
**
437982 TTCTTTTCAC-TTTCTTTGCTCTTTTCTCTCA
1 TTC--TTC-CTTTTCTTTTTTCTTTTCTCTCA
*
438013 TTTTTCCTTTTCTTTTTTC
1 TTCTTCCTTTTCTTTTTTC
438032 AATTTTCTTT
Statistics
Matches: 41, Mismatches: 5, Indels: 10
0.73 0.09 0.18
Matches are distributed among these distances:
28 1 0.02
29 12 0.29
31 19 0.46
32 1 0.02
33 7 0.17
34 1 0.02
ACGTcount: A:0.05, C:0.27, G:0.01, T:0.67
Consensus pattern (29 bp):
TTCTTCCTTTTCTTTTTTCTTTTCTCTCA
Found at i:438005 original size:11 final size:11
Alignment explanation
Indices: 437937--438005 Score: 50
Period size: 11 Copynumber: 5.9 Consensus size: 11
437927 CACGTTTAAT
*
437937 TTTTCTCTCTC
1 TTTTCTCTTTC
*
437948 TTTT-TCTTCC
1 TTTTCTCTTTC
437958 TTTTCATCTTTTTC
1 TTTTC-TC--TTTC
437972 TTTTCTCTCATTC
1 TTTTCTCT--TTC
*
437985 TTTTCACTTTC
1 TTTTCTCTTTC
*
437996 TTTGCTCTTT
1 TTTTCTCTTT
438006 TCTCTCATTT
Statistics
Matches: 46, Mismatches: 6, Indels: 12
0.72 0.09 0.19
Matches are distributed among these distances:
10 8 0.17
11 16 0.35
12 2 0.04
13 12 0.26
14 8 0.17
ACGTcount: A:0.04, C:0.28, G:0.01, T:0.67
Consensus pattern (11 bp):
TTTTCTCTTTC
Found at i:438039 original size:31 final size:31
Alignment explanation
Indices: 437954--438031 Score: 90
Period size: 29 Copynumber: 2.5 Consensus size: 31
437944 TCTCTTTTTC
437954 TTCCTTTTCATCTTTTTCTTTTCTCTCATTCTT
1 TTCCTTTTC-T-TTTTTCTTTTCTCTCATTCTT
**
437987 TTCAC-TTTCTTTGCTCTTTTCTCTCA-T-TT
1 TTC-CTTTTCTTTTTTCTTTTCTCTCATTCTT
438016 TTCCTTTTCTTTTTTC
1 TTCCTTTTCTTTTTTC
438032 AATTTTCTTT
Statistics
Matches: 39, Mismatches: 4, Indels: 8
0.76 0.08 0.16
Matches are distributed among these distances:
28 1 0.03
29 14 0.36
30 1 0.03
31 14 0.36
32 1 0.03
33 7 0.18
34 1 0.03
ACGTcount: A:0.05, C:0.27, G:0.01, T:0.67
Consensus pattern (31 bp):
TTCCTTTTCTTTTTTCTTTTCTCTCATTCTT
Found at i:448048 original size:30 final size:30
Alignment explanation
Indices: 448009--448261 Score: 195
Period size: 30 Copynumber: 8.3 Consensus size: 30
447999 GAAAATTTGA
*
448009 GGTCGAAAATGTGATTTTTAGA-AAGTTTAAG
1 GGTC-AAAATGT-AATTTTAGAGAAGTTTAAG
* * * *
448040 AGTCAAAATATAATTTTGGAGAAGTTCAAG
1 GGTCAAAATGTAATTTTAGAGAAGTTTAAG
* ** *
448070 GGTTAAAATGTAATTTTAGAGAAGTTCGAC
1 GGTCAAAATGTAATTTTAGAGAAGTTTAAG
* * *
448100 AGTTAAAATGTAATTTTAGAGAAGTTTAGG
1 GGTCAAAATGTAATTTTAGAGAAGTTTAAG
* * * *
448130 GGTTAATATGTAATTTTAGGGAAGTTTGAG
1 GGTCAAAATGTAATTTTAGAGAAGTTTAAG
* * *
448160 GGTCAAAATGTAATTTTGGAAAAGTTTAGGG
1 GGTCAAAATGTAATTTTAGAGAAGTTTA-AG
* * * **
448191 GGTTAAAATGTAAAGTTTA-AGTAGTTTGGG
1 GGTCAAAATGT-AATTTTAGAGAAGTTTAAG
** *
448221 GGTCAAAAAATAATTTTAGAGAAGTTTTTAG
1 GGTCAAAATGTAATTTTAGAGAAG-TTTAAG
448252 GAGTCAAAAT
1 G-GTCAAAAT
448262 AGGATTTTTA
Statistics
Matches: 174, Mismatches: 42, Indels: 11
0.77 0.19 0.05
Matches are distributed among these distances:
29 13 0.07
30 124 0.71
31 25 0.14
32 12 0.07
ACGTcount: A:0.38, C:0.03, G:0.25, T:0.34
Consensus pattern (30 bp):
GGTCAAAATGTAATTTTAGAGAAGTTTAAG
Found at i:448224 original size:61 final size:60
Alignment explanation
Indices: 448014--448247 Score: 247
Period size: 60 Copynumber: 3.9 Consensus size: 60
448004 TTTGAGGTCG
* * * * * *
448014 AAAATGTGATTTTTAGA-AAGTTTAAGAGTCAAAATATAATTTTGGAGAAGTTCAAGGGTT
1 AAAATGT-AATTTTAGAGAAGTTTGAGGGTCAAAATATAATTTTAGAGAAGTTTAGGGGTT
* ** * *
448074 AAAATGTAATTTTAGAGAAGTTCGACAGTTAAAATGTAATTTTAGAGAAGTTTAGGGGTT
1 AAAATGTAATTTTAGAGAAGTTTGAGGGTCAAAATATAATTTTAGAGAAGTTTAGGGGTT
* * * * *
448134 AATATGTAATTTTAGGGAAGTTTGAGGGTCAAAATGTAATTTTGGAAAAGTTTAGGGGGTT
1 AAAATGTAATTTTAGAGAAGTTTGAGGGTCAAAATATAATTTTAGAGAAGTTTA-GGGGTT
* * * *
448195 AAAATGTAAAGTTTA-AGTAGTTTGGGGGTCAAAAAATAATTTTAGAGAAGTTT
1 AAAATGT-AATTTTAGAGAAGTTTGAGGGTCAAAATATAATTTTAGAGAAGTTT
448248 TTAGGAGTCA
Statistics
Matches: 145, Mismatches: 26, Indels: 5
0.82 0.15 0.03
Matches are distributed among these distances:
59 8 0.06
60 88 0.61
61 43 0.30
62 6 0.04
ACGTcount: A:0.38, C:0.03, G:0.24, T:0.35
Consensus pattern (60 bp):
AAAATGTAATTTTAGAGAAGTTTGAGGGTCAAAATATAATTTTAGAGAAGTTTAGGGGTT
Found at i:449259 original size:11 final size:11
Alignment explanation
Indices: 449226--449259 Score: 52
Period size: 11 Copynumber: 3.2 Consensus size: 11
449216 TCATCTCTTT
449226 TTTATTA-TTA
1 TTTATTATTTA
*
449236 TTTATTATATA
1 TTTATTATTTA
449247 TTTATTATTTA
1 TTTATTATTTA
449258 TT
1 TT
449260 GAATATTAAT
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
10 7 0.33
11 14 0.67
ACGTcount: A:0.29, C:0.00, G:0.00, T:0.71
Consensus pattern (11 bp):
TTTATTATTTA
Found at i:449807 original size:24 final size:24
Alignment explanation
Indices: 449757--449807 Score: 68
Period size: 23 Copynumber: 2.1 Consensus size: 24
449747 TAGTTTAGTG
* *
449757 TTGTAATTTGGGCTTGGGATTTTT
1 TTGTAATTTGGGCTTGGAATTTAT
449781 TTGTAA-TTGGGCTTGGAATTGTAT
1 TTGTAATTTGGGCTTGGAATT-TAT
449805 TTG
1 TTG
449808 GACATTTTAA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
23 13 0.54
24 11 0.46
ACGTcount: A:0.16, C:0.04, G:0.29, T:0.51
Consensus pattern (24 bp):
TTGTAATTTGGGCTTGGAATTTAT
Found at i:450484 original size:39 final size:38
Alignment explanation
Indices: 450320--450515 Score: 135
Period size: 39 Copynumber: 5.1 Consensus size: 38
450310 ATTAGATGGT
*
450320 TGCAATCTG-CCCTAGACTCGGGGTAAGAGATTGGCTGA
1 TGCAATCTGCCCCAAG-CTCGGGGTAAGAGATTGGCTGA
* * * * * *
450358 T-CATGATCTACCCTAGGCTCGGGGTAAGAGATCGGACGGT
1 TGCA--ATCTGCCCCAAGCTCGGGGTAAGAGATTGG-CTGA
* ** * * * *
450398 TGCACTCTGCATCAGGCTCAGGGTAGGAGATTGGTTGA
1 TGCAATCTGCCCCAAGCTCGGGGTAAGAGATTGGCTGA
** *
450436 TGGTGATCTGCCCCAAGCTCGGGGTAAGAGATTGGACTGC
1 T-GCAATCTGCCCCAAGCTCGGGGTAAGAGATTGG-CTGA
* * * *
450476 TGCAATCTGCCCCAAGTTCGAGGTAGGAGATTAGCTGA
1 TGCAATCTGCCCCAAGCTCGGGGTAAGAGATTGGCTGA
450514 TG
1 TG
450516 GTGATCTACT
Statistics
Matches: 116, Mismatches: 35, Indels: 14
0.70 0.21 0.08
Matches are distributed among these distances:
37 2 0.02
38 8 0.07
39 95 0.82
40 9 0.08
41 2 0.02
ACGTcount: A:0.22, C:0.21, G:0.33, T:0.24
Consensus pattern (38 bp):
TGCAATCTGCCCCAAGCTCGGGGTAAGAGATTGGCTGA
Found at i:450485 original size:78 final size:77
Alignment explanation
Indices: 450320--450524 Score: 214
Period size: 78 Copynumber: 2.6 Consensus size: 77
450310 ATTAGATGGT
* * ** * *
450320 TGCAATCTGC-CCTAGACTCGGGGTAAGAGATTGGCTGATCATGATCTACCCTAGGCTCGGGGTA
1 TGCAATCTGCACCAAG-CTC-GGGTAGGAGATTGGCTGATGGTGATCTACCCCAAGCTCGGGGTA
*
450384 AGAGATCGGACGGT
64 AGAGATCGGACGGC
* * * * *
450398 TGCACTCTGCATCAGGCTCAGGGTAGGAGATTGGTTGATGGTGATCTGCCCCAAGCTCGGGGTAA
1 TGCAATCTGCACCAAGCTC-GGGTAGGAGATTGGCTGATGGTGATCTACCCCAAGCTCGGGGTAA
* *
450463 GAGATTGGACTGC
65 GAGATCGGACGGC
* * *
450476 TGCAATCTGCCCCAAGTTCGAGGTAGGAGATTAGCTGATGGTGATCTAC
1 TGCAATCTGCACCAAGCTCG-GGTAGGAGATTGGCTGATGGTGATCTAC
450525 TCCTCTTCGT
Statistics
Matches: 102, Mismatches: 23, Indels: 4
0.79 0.18 0.03
Matches are distributed among these distances:
77 1 0.01
78 99 0.97
79 2 0.02
ACGTcount: A:0.22, C:0.21, G:0.32, T:0.24
Consensus pattern (77 bp):
TGCAATCTGCACCAAGCTCGGGTAGGAGATTGGCTGATGGTGATCTACCCCAAGCTCGGGGTAAG
AGATCGGACGGC
Found at i:453612 original size:3 final size:3
Alignment explanation
Indices: 453604--453630 Score: 54
Period size: 3 Copynumber: 9.0 Consensus size: 3
453594 GGTCATCCCT
453604 TTC TTC TTC TTC TTC TTC TTC TTC TTC
1 TTC TTC TTC TTC TTC TTC TTC TTC TTC
453631 AATATCATAA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 24 1.00
ACGTcount: A:0.00, C:0.33, G:0.00, T:0.67
Consensus pattern (3 bp):
TTC
Found at i:464261 original size:31 final size:30
Alignment explanation
Indices: 464193--464396 Score: 252
Period size: 30 Copynumber: 6.8 Consensus size: 30
464183 TTTGAGGTAA
* * *
464193 AAAATGTAATTTTTA-AAAAGTTT-AGCAGTC
1 AAAATGTAA-TTTTAGAGAAGTTTAAG-GGTT
*
464223 AAAATGTAATGTTAGAGAAGTTTAAGGGTT
1 AAAATGTAATTTTAGAGAAGTTTAAGGGTT
*
464253 AAAAATGTAATTTTACAGAAGTTTAAGGGTT
1 -AAAATGTAATTTTAGAGAAGTTTAAGGGTT
*
464284 AAAATGTAATTTTA-AGGAAGTTTAGGGGTT
1 AAAATGTAATTTTAGA-GAAGTTTAAGGGTT
464314 AAAATGTAATTTTAGAGAAGTTTAAGGGTT
1 AAAATGTAATTTTAGAGAAGTTTAAGGGTT
* * *
464344 AAAATGTAATTTTTGAGAAGTTTAGGGGTC
1 AAAATGTAATTTTAGAGAAGTTTAAGGGTT
* *
464374 AAAATATAATTTTGGAGAAGTTT
1 AAAATGTAATTTTAGAGAAGTTT
464397 GGGAGTCAAA
Statistics
Matches: 156, Mismatches: 13, Indels: 10
0.87 0.07 0.06
Matches are distributed among these distances:
29 5 0.03
30 120 0.77
31 31 0.20
ACGTcount: A:0.40, C:0.02, G:0.22, T:0.36
Consensus pattern (30 bp):
AAAATGTAATTTTAGAGAAGTTTAAGGGTT
Found at i:466048 original size:6 final size:6
Alignment explanation
Indices: 466037--466075 Score: 55
Period size: 6 Copynumber: 6.7 Consensus size: 6
466027 ATTTGGACAT
466037 TTTAAA TTTAAA TTTAAA --TAAA TTTAAA TTTAAAA TTTA
1 TTTAAA TTTAAA TTTAAA TTTAAA TTTAAA TTT-AAA TTTA
466076 TTTGGGTTTG
Statistics
Matches: 30, Mismatches: 0, Indels: 6
0.83 0.00 0.17
Matches are distributed among these distances:
4 4 0.13
6 20 0.67
7 6 0.20
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (6 bp):
TTTAAA
Found at i:466060 original size:16 final size:16
Alignment explanation
Indices: 466039--466070 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
466029 TTGGACATTT
466039 TAAATTTAAATTTAAA
1 TAAATTTAAATTTAAA
466055 TAAATTTAAATTTAAA
1 TAAATTTAAATTTAAA
466071 ATTTATTTGG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (16 bp):
TAAATTTAAATTTAAA
Found at i:466188 original size:15 final size:15
Alignment explanation
Indices: 466170--466204 Score: 54
Period size: 15 Copynumber: 2.3 Consensus size: 15
466160 TTGTGTGTGT
466170 TCGCAACA-TGAGTGC
1 TCGCAACACT-AGTGC
466185 TCGCAACACTAGTGC
1 TCGCAACACTAGTGC
466200 TCGCA
1 TCGCA
466205 TCTTCCAAGC
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
15 18 0.95
16 1 0.05
ACGTcount: A:0.26, C:0.31, G:0.23, T:0.20
Consensus pattern (15 bp):
TCGCAACACTAGTGC
Found at i:466457 original size:15 final size:15
Alignment explanation
Indices: 466433--466476 Score: 54
Period size: 15 Copynumber: 2.9 Consensus size: 15
466423 TTCTCAATGT
*
466433 GAGTGCTCGCAACAG
1 GAGTGTTCGCAACAG
*
466448 GAGTGTTCGCAACAT
1 GAGTGTTCGCAACAG
466463 GAGTGCTT-GCAACA
1 GAGTG-TTCGCAACA
466477 CCAATGCTCG
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
15 24 0.92
16 2 0.08
ACGTcount: A:0.27, C:0.23, G:0.30, T:0.20
Consensus pattern (15 bp):
GAGTGTTCGCAACAG
Found at i:468641 original size:16 final size:16
Alignment explanation
Indices: 468604--468741 Score: 58
Period size: 18 Copynumber: 8.6 Consensus size: 16
468594 CCTCACGCTC
* *
468604 TCTTTTTGTTTCAACT
1 TCTTTTTCTTTCAATT
*
468620 TC-TTTTCTTTCATTT
1 TCTTTTTCTTTCAATT
*
468635 TCTTTTTCATTCACAATT
1 TCTTTTTC-TT-TCAATT
** *
468653 TC-TTTTCTCGCACTT
1 TCTTTTTCTTTCAATT
468668 TCTTTTTCTTTC----
1 TCTTTTTCTTTCAATT
* *
468680 TC-ATTTCTCTT-AAGCTC
1 TCTTTTTCT-TTCAA--TT
468697 TCTTTTTCTTTCAATT
1 TCTTTTTCTTTCAATT
*
468713 TCCTTTTCATTCTCAATT
1 TCTTTTTC-TT-TCAATT
468731 TCTTGTTTCTT
1 TCTT-TTTCTT
468742 CCTCTCTAAC
Statistics
Matches: 91, Mismatches: 15, Indels: 30
0.67 0.11 0.22
Matches are distributed among these distances:
11 5 0.05
12 4 0.04
15 18 0.20
16 23 0.25
17 13 0.14
18 24 0.26
19 4 0.04
ACGTcount: A:0.12, C:0.24, G:0.03, T:0.62
Consensus pattern (16 bp):
TCTTTTTCTTTCAATT
Found at i:469888 original size:17 final size:17
Alignment explanation
Indices: 469857--469889 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
469847 CAAACACTTA
469857 TTAAACTAAAATAAAAC
1 TTAAACTAAAATAAAAC
469874 TTAAA-TAAAATTAAAA
1 TTAAACTAAAA-TAAAA
469890 AGTCCTTAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 5 0.33
17 10 0.67
ACGTcount: A:0.67, C:0.06, G:0.00, T:0.27
Consensus pattern (17 bp):
TTAAACTAAAATAAAAC
Found at i:470438 original size:216 final size:216
Alignment explanation
Indices: 470051--472235 Score: 2356
Period size: 216 Copynumber: 10.2 Consensus size: 216
470041 CTTCACAATA
* * * * * * *
470051 TTTTATGAGTTCTTTTAAAACTTTGATTCCTTAAAGTATTCAATACAATCCATTCCTTCGAGCAA
1 TTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGTAA
* * * * * * * *
470116 TTTTTCGAATATTCCATGCT--ATGCAGAGCACAACATTTAGTCTAAATAGATTGTCATTTTGTA
66 TTTTCCGAACATTCCATGCTCGA-G-AAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTA
* * *
470179 AACAACTTTTGGTCTTTGAATTAAAAACTTATTTAGGTGAGAATTATTTCTCTCTTGGTTCTTGA
129 AAAAACTTTTGGTCTTTGAATTAAAAACTTATTTAGGTGAGAATTGTTTCTCTCTTGGTTCTTGG
* * *
470244 CCAAACATCCGAACTTGACAAAC
194 CCGAACTTTCGAACTTGACAAAC
* * *
470267 TTTTACAAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGGTGCATTCCTTCGAGTAA
1 TTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGTAA
** * *
470332 TTTTTTGAACATTCCGTGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAA
66 TTTTCCGAACATTCCATGCTCGAGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAA
* * * * ** *
470397 CAACTTTTGGTCCTTAAAATAAAAACTTATTTATATGAGAATTCTTTCTCTCTTGGTTCTTGGCC
131 AAACTTTTGGTCTTTGAATTAAAAACTTATTTAGGTGAGAATTGTTTCTCTCTTGGTTCTTGGCC
*
470462 GAAC-TTCTGAACTTGTCAAAC
196 GAACTTTC-GAACTTGACAAAC
* * * * * *
470483 TTTTACGAGTTCTTTTATAACTACAGTTACTTAAAGTATTGAAGACAATCCATTCCTTCGACCT-
1 TTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGA-GTA
* * * * * * ** *
470547 ATTTTTCGAACATTCCAAGATCGGGAAATTGAATCATTTGGTCTAAATAGTTT-TCAAACTTCTA
65 ATTTTCCGAACATTCCATGCTCGAGAAATCGCATCATTTGGTCTAAATAGTTTGTC-ATTTTGTA
* * * ** **
470611 AACAACTTTTGGTCTTTGAATTAGAAACTTATTTAGGTGAAAATTACTTCTCTCTT-GTTCACGG
129 AAAAACTTTTGGTCTTTGAATTAAAAACTTATTTAGGTGAGAATTGTTTCTCTCTTGGTTCTTGG
* * * *
470675 GCGAACTTTCAAACTTCACAATC
194 CCGAACTTTCGAACTTGACAAAC
* * * * * *
470698 TTTTAGGAATTCTTTTATAACTTCGATTCCTTAAACTATTC-AGAACAATCCATTCCTTCGAGAA
1 TTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAG-ACGATCCATTCCTTCGAGTA
* * * * **
470762 ATTATCCGAACATTCCATGCTTGAGAAA-CTGTATCATTTGGTCTAAATAGTTTTTCATTTAATA
65 ATTTTCCGAACATTCCATGCTCGAGAAATC-GCATCATTTGGTCTAAATAGTTTGTCATTTTGTA
* * *
470826 AAAATCTTTTTGTCTTTGAATTAAAAACATATTTAGGTGAGAATTGTTTCTCTCTTGGTTCTTGG
129 AAAAACTTTTGGTCTTTGAATTAAAAACTTATTTAGGTGAGAATTGTTTCTCTCTTGGTTCTTGG
*
470891 CCGAACTTTCGAACATGACAAAC
194 CCGAACTTTCGAACTTGACAAAC
* *
470914 TTTTACGAGTTCTTTTATAACTTCAGTTCCTTAAAGTATTCAAGATGATCCATTCCTTCGA-TCA
1 TTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGT-A
* * *
470978 ATTTTCCGAACATT-CATGCTCGAGAAATCGCATCATTTAGTCTAAATTGTCTGTCATTTTGTAA
65 ATTTTCCGAACATTCCATGCTCGAGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAA
* * * * *
471042 ACAACTTTTGGTCTTTGAATTAAAAACTTATTTAGGTGAAAATTGTTTCCCTGTTGGCTCTTGGC
130 AAAACTTTTGGTCTTTGAATTAAAAACTTATTTAGGTGAGAATTGTTTCTCTCTTGGTTCTTGGC
* *
471107 CGGACTTTCGAACTTGACAAAA
195 CGAACTTTCGAACTTGACAAAC
* * * * * * * * *
471129 TTTTACAACTTCATTTAAAACTTCAGTTCCTGAAAGCATTTAAGATGAT-CATTTCCTTCGAGTA
1 TTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCA-TTCCTTCGAGTA
* * * * *
471193 ATTTTTCGAACATTCCATGCTCGATATATCACATCATTTGGTCTAAATAGTTTGCCATTTTGTAA
65 ATTTTCCGAACATTCCATGCTCGAGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAA
** * *
471258 AAAACTTTTGGTCTTTGAATTAAAAA-TTATTTACATGTGAATTGTTTCTCCCTTGGTTC-T--C
130 AAAACTTTTGGTCTTTGAATTAAAAACTTATTTAGGTGAGAATTGTTTCTCTCTTGGTTCTTGGC
* * * *
471319 GGAACTTTCAAAATTGTCAAAC
195 CGAACTTTCGAACTTGACAAAC
* * *
471341 TTTTACGAGTTCTTTTATAACTTCAGTTCTTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAA
1 TTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGTAA
* * *
471406 TATTCCGAACATTCCATGCTCGGGAAATCGTATCATTTGGTCTAAATAGTTTGTCATTTTGTAAA
66 TTTTCCGAACATTCCATGCTCGAGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGT--A
* * * * *
471471 AAAAACTTTTGGTTTTTGAATTAAAAAC----TTACGTAAGAATTGTTTCTCTCTTGGTTCTCGA
129 AAAAACTTTTGGTCTTTGAATTAAAAACTTATTTAGGTGAGAATTGTTTCTCTCTTGGTTCTTGG
*** * * *
471532 TTTAACTTCCAAACTTGTCAAAC
194 CCGAACTTTCGAACTTGACAAAC
* * * * * * *
471555 TTTTATGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGATGAATCTAATCCTTTGAGCA
1 TTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACG-ATCCATTCCTTCGAGTA
** *
471620 ATTTTCAAAACATTTCATGCTCG-GAAAATCGCATCATTTGGTCTAAATAGTTTGTCATTCTT-T
65 ATTTTCCGAACATTCCATGCTCGAG-AAATCGCATCATTTGGTCTAAATAGTTTGTCATT-TTGT
* **
471683 AAAAAAACTTTTGGTCTTTGAATTAAAAACATATTTAGGTGAGAA-TAATT-TCTCTTGGTTCTT
128 -AAAAAACTTTTGGTCTTTGAATTAAAAACTTATTTAGGTGAGAATTGTTTCTCTCTTGGTTCTT
* * *
471746 GGTCGAACTTTC-AAATATGATAAAC
192 GGCCGAACTTTCGAACT-TGACAAAC
* * * *
471771 TTTTATGAGTTCTTTTATAACTTCGGTTCCTTAAAATTTTCAAGATGATCCATTCCTTCGA-TCA
1 TTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGT-A
* * * * *
471835 ATTTTCCGAACATTCCATGCTCGAGAAATCGCATCATTTAGCCTAAATTGTCTATCATTTTGTAA
65 ATTTTCCGAACATTCCATGCTCGAGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAA
* * * *
471900 AAAACTTTTGGTCTTTGAATTAAAAACTTATTTAGGTGAAAATTGTTTCTCTCTTGGCTCTCGGT
130 AAAACTTTTGGTCTTTGAATTAAAAACTTATTTAGGTGAGAATTGTTTCTCTCTTGGTTCTTGGC
*
471965 CGAACTTTCGAACTTGACAAAA
195 CGAACTTTCGAACTTGACAAAC
* * * * * * * *
471987 TTTTACGACTTCGTTTAAAACTTCAGTTCCTGAAAGTATTTAAGACGATCCTTTCCTTCGAGCAA
1 TTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGTAA
** * * * *
472052 TTTTTTGAACTTTCCATGCTCGAGATATCGTATCATTTGGTCTAAATAGTTTGTCATTTTATAAA
66 TTTTCCGAACATTCCATGCTCGAGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGT-AA
* * * * *
472117 AAAAC-TTT-GTCTTTGAATTAAAATA-TTATTTACGTGAGAATTGTTTCTCCCTTGATTCTCGA
130 AAAACTTTTGGTCTTTGAATTAAAA-ACTTATTTAGGTGAGAATTGTTTCTCTCTTGGTTCTTGG
* * *
472179 CCGAACTTTTGAACTTGTCAATC
194 CCGAACTTTCGAACTTGACAAAC
* *
472202 ATTTATGAGTTCTTTTATAACTTCGGTTCCTTAA
1 TTTTACGAGTTCTTTTATAACTTCGGTTCCTTAA
472236 TGATATGAAA
Statistics
Matches: 1649, Mismatches: 279, Indels: 83
0.82 0.14 0.04
Matches are distributed among these distances:
211 25 0.02
212 123 0.07
213 2 0.00
214 166 0.10
215 602 0.37
216 705 0.43
217 17 0.01
218 9 0.01
ACGTcount: A:0.29, C:0.17, G:0.14, T:0.40
Consensus pattern (216 bp):
TTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGTAA
TTTTCCGAACATTCCATGCTCGAGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAA
AAACTTTTGGTCTTTGAATTAAAAACTTATTTAGGTGAGAATTGTTTCTCTCTTGGTTCTTGGCC
GAACTTTCGAACTTGACAAAC
Found at i:470915 original size:431 final size:430
Alignment explanation
Indices: 470051--472235 Score: 2364
Period size: 431 Copynumber: 5.1 Consensus size: 430
470041 CTTCACAATA
* * * * * *
470051 TTTTATGAGTTCTTTTAAAACTT-TGATTCCTTAAAGTATTCAATACAATCCATTCCTTCGAGCA
1 TTTTACGAGTTCTTTTATAACTTCAG-TTCCTTAAAGTATTCAAGACGATCCATTCCTTCGATCA
* * * * * * *
470115 ATTTTTCGAATATTCCATGCT--ATGCAGAGCACAACATTTAGTCTAAATAGAT-TGTCATTTTG
65 ATTTTCCGAACATTCCATGCTCGA-G-AAATCGCATCATTTAGTCTAAATAG-TCTTTCATTTTG
* * *
470177 TAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTAGGTGAGAATTATTTCTCTCTTGGTTCTT
127 TAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTAGGTGAAAATTGTTTCTCTCTTGGTTCTC
* * * * * *
470242 GACCAAACATCCGAACTTGACAAACTTTTACAAGTTCTTTTATAACTTCGGTTCCTTAAAGTATT
192 GGCCGAACTTTCGAACTTGACAAACTTTTAGAA-TTCTTTTATAACTTCGATTCCTTAAAGTATT
* * * * * *
470307 CAAGACGGTGCATTCCTTCGAGTAATTTTTTGAACATTCCGTGCTCGGGAAATCGCATCATTTGG
256 CAAGACGATCCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCGAGAAATCGCATCATTTGG
* * * * **
470372 TCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCCTTAAAATAAAAACTTATTTATATGAGA
321 TCTAAATAGTTTGTCATTTTATAAA-AACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGA
* *
470437 ATTCTTTCTCTCTTGGTTCTTGGCCGAAC-TTCTGAACTTGTCAAAC
385 ATTGTTTCTCTCTTGGTTCTTGGCCGAACTTTC-GAACATGTCAAAC
* * * * * *
470483 TTTTACGAGTTCTTTTATAACTACAGTTACTTAAAGTATTGAAGACAATCCATTCCTTCGACCTA
1 TTTTACGAGTTCTTTTATAACTTCAGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGATCAA
* * * * * * * ** *
470548 TTTTTCGAACATTCCAAGATCGGGAAATTGAATCATTTGGTCTAAATAGT-TTTCAAACTTCTAA
66 TTTTCCGAACATTCCATGCTCGAGAAATCGCATCATTTAGTCTAAATAGTCTTTC-ATTTTGTAA
* ** * *
470612 ACAACTTTTGGTCTTTGAATTAGAAACTTATTTAGGTGAAAATTACTTCTCTCTT-GTTCACGGG
130 ACAACTTTTGGTCTTTGAATTAAAAACTTATTTAGGTGAAAATTGTTTCTCTCTTGGTTCTCGGC
* * * *
470676 CGAACTTTCAAACTTCACAATCTTTTAGGAATTCTTTTATAACTTCGATTCCTTAAACTATTC-A
195 CGAACTTTCGAACTTGACAAACTTTTA-GAATTCTTTTATAACTTCGATTCCTTAAAGTATTCAA
* * * * * *
470740 GAACAATCCATTCCTTCGAGAAATTATCCGAACATTCCATGCTTGAGAAA-CTGTATCATTTGGT
259 G-ACGATCCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCGAGAAATC-GCATCATTTGGT
* * * * *
470804 CTAAATAGTTTTTCATTTAATAAAAATCTTTTTGTCTTTGAATTAAAAACATATTTAGGTGAGAA
322 CTAAATAGTTTGTCATTTTATAAAAA-CTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAA
*
470869 TTGTTTCTCTCTTGGTTCTTGGCCGAACTTTCGAACATGACAAAC
386 TTGTTTCTCTCTTGGTTCTTGGCCGAACTTTCGAACATGTCAAAC
*
470914 TTTTACGAGTTCTTTTATAACTTCAGTTCCTTAAAGTATTCAAGATGATCCATTCCTTCGATCAA
1 TTTTACGAGTTCTTTTATAACTTCAGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGATCAA
* *
470979 TTTTCCGAACATT-CATGCTCGAGAAATCGCATCATTTAGTCTAAATTGTCTGTCATTTTGTAAA
66 TTTTCCGAACATTCCATGCTCGAGAAATCGCATCATTTAGTCTAAATAGTCTTTCATTTTGTAAA
* * * *
471043 CAACTTTTGGTCTTTGAATTAAAAACTTATTTAGGTGAAAATTGTTTCCCTGTTGGCTCTTGGCC
131 CAACTTTTGGTCTTTGAATTAAAAACTTATTTAGGTGAAAATTGTTTCTCTCTTGGTTCTCGGCC
* * * * * * * *
471108 GGACTTTCGAACTTGACAAAATTTTACAACTTCATTTAAAACTTC-AGTTCCTGAAAGCATTTAA
196 GAACTTTCGAACTTGACAAACTTTTAGAA-TTCTTTTATAACTTCGA-TTCCTTAAAGTATTCAA
* * * * *
471172 GATGAT-CATTTCCTTCGAGTAATTTTTCGAACATTCCATGCTCGATATATCACATCATTTGGTC
259 GACGATCCA-TTCCTTCGAGCAATTTTTCGAACATTCCATGCTCGAGAAATCGCATCATTTGGTC
* * * *
471236 TAAATAGTTTGCCATTTTGTAAAAAACTTTTGGTCTTTGAATTAAAAA-TTATTTACATGTGAAT
323 TAAATAGTTTGTCATTTTAT-AAAAACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAAT
* * *
471300 TGTTTCTCCCTTGGTTC-T--CGGAACTTTC-AAAATTGTCAAAC
387 TGTTTCTCTCTTGGTTCTTGGCCGAACTTTCGAACA-TGTCAAAC
* *
471341 TTTTACGAGTTCTTTTATAACTTCAGTTCTTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAA
1 TTTTACGAGTTCTTTTATAACTTCAGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGATCAA
* * * *
471406 TATTCCGAACATTCCATGCTCGGGAAATCGTATCATTTGGTCTAAATAGT-TTGTCATTTTGTAA
66 TTTTCCGAACATTCCATGCTCGAGAAATCGCATCATTTAGTCTAAATAGTCTT-TCATTTTGT--
* * *
471470 AAAAAACTTTTGGTTTTTGAATTAAAAAC----TTACGT-AAGAATTGTTTCTCTCTTGGTTCTC
128 AAACAACTTTTGGTCTTTGAATTAAAAACTTATTTAGGTGAA-AATTGTTTCTCTCTTGGTTCTC
**** * * * * * *
471530 GATTTAACTTCCAAACTTGTCAAACTTTTATGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATT
192 GGCCGAACTTTCGAACTTGACAAACTTTTA-GAATTCTTTTATAACTTCGATTCCTTAAAGTATT
* * * * * *
471595 CAAGATGAATCTAATCCTTTGAGCAA-TTTTCAAAACATTTCATGCTCG-GAAAATCGCATCATT
256 CAAGACG-ATCCATTCCTTCGAGCAATTTTTC-GAACATTCCATGCTCGAG-AAATCGCATCATT
* * *
471658 TGGTCTAAATAGTTTGTCATTCTTTAAAAAAACTTTTGGTCTTTGAATTAAAAACATATTTAGGT
318 TGGTCTAAATAGTTTGTCA-T-TTTATAAAAACTTTTGGTCTTTGAATTAAAAACTTATTTACGT
** * * *
471723 GAGAA-TAATT-TCTCTTGGTTCTTGGTCGAACTTTCAAATATGAT-AAAC
381 GAGAATTGTTTCTCTCTTGGTTCTTGGCCGAACTTTCGAACATG-TCAAAC
* * * * *
471771 TTTTATGAGTTCTTTTATAACTTCGGTTCCTTAAAATTTTCAAGATGATCCATTCCTTCGATCAA
1 TTTTACGAGTTCTTTTATAACTTCAGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGATCAA
* * *
471836 TTTTCCGAACATTCCATGCTCGAGAAATCGCATCATTTAGCCTAAATTGTCTATCATTTTGTAAA
66 TTTTCCGAACATTCCATGCTCGAGAAATCGCATCATTTAGTCTAAATAGTCTTTCATTTTGTAAA
* * *
471901 AAACTTTTGGTCTTTGAATTAAAAACTTATTTAGGTGAAAATTGTTTCTCTCTTGGCTCTCGGTC
131 CAACTTTTGGTCTTTGAATTAAAAACTTATTTAGGTGAAAATTGTTTCTCTCTTGGTTCTCGGCC
* * * * * *
471966 GAACTTTCGAACTTGACAAAATTTTACGACTTCGTTTAAAACTTC-AGTTCCTGAAAGTATTTAA
196 GAACTTTCGAACTTGACAAACTTTTA-GAATTCTTTTATAACTTCGA-TTCCTTAAAGTATTCAA
* * * * *
472030 GACGATCCTTTCCTTCGAGCAATTTTTTGAACTTTCCATGCTCGAGATATCGTATCATTTGGTCT
259 GACGATCCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCGAGAAATCGCATCATTTGGTCT
472095 AAATAGTTTGTCATTTTATAAAAAAAC-TTT-GTCTTTGAATTAAAATA-TTATTTACGTGAGAA
324 AAATAGTTTGTCATTTTAT--AAAAACTTTTGGTCTTTGAATTAAAA-ACTTATTTACGTGAGAA
* * * * * * *
472157 TTGTTTCTCCCTTGATTCTCGACCGAACTTTTGAACTTGTCAATC
386 TTGTTTCTCTCTTGGTTCTTGGCCGAACTTTCGAACATGTCAAAC
* * *
472202 ATTTATGAGTTCTTTTATAACTTCGGTTCCTTAA
1 TTTTACGAGTTCTTTTATAACTTCAGTTCCTTAA
472236 TGATATGAAA
Statistics
Matches: 1459, Mismatches: 242, Indels: 105
0.81 0.13 0.06
Matches are distributed among these distances:
425 2 0.00
426 82 0.06
427 157 0.11
428 102 0.07
429 47 0.03
430 284 0.19
431 535 0.37
432 246 0.17
433 4 0.00
ACGTcount: A:0.29, C:0.17, G:0.14, T:0.40
Consensus pattern (430 bp):
TTTTACGAGTTCTTTTATAACTTCAGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGATCAA
TTTTCCGAACATTCCATGCTCGAGAAATCGCATCATTTAGTCTAAATAGTCTTTCATTTTGTAAA
CAACTTTTGGTCTTTGAATTAAAAACTTATTTAGGTGAAAATTGTTTCTCTCTTGGTTCTCGGCC
GAACTTTCGAACTTGACAAACTTTTAGAATTCTTTTATAACTTCGATTCCTTAAAGTATTCAAGA
CGATCCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCGAGAAATCGCATCATTTGGTCTAA
ATAGTTTGTCATTTTATAAAAACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTT
TCTCTCTTGGTTCTTGGCCGAACTTTCGAACATGTCAAAC
Found at i:473989 original size:6 final size:6
Alignment explanation
Indices: 473980--474020 Score: 55
Period size: 6 Copynumber: 6.8 Consensus size: 6
473970 TATCTTCTAG
* * *
473980 TTTTTC TTTTTC TTTTTC TTCTTG TTTTTC ATTTTC TTTTT
1 TTTTTC TTTTTC TTTTTC TTTTTC TTTTTC TTTTTC TTTTT
474021 GATCTTGAGA
Statistics
Matches: 29, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
6 29 1.00
ACGTcount: A:0.02, C:0.15, G:0.02, T:0.80
Consensus pattern (6 bp):
TTTTTC
Found at i:473999 original size:24 final size:24
Alignment explanation
Indices: 473972--474020 Score: 80
Period size: 24 Copynumber: 2.0 Consensus size: 24
473962 TGTATGGGTA
*
473972 TCTTCTAGTTTTTCTTTTTCTTTT
1 TCTTCTAGTTTTTCATTTTCTTTT
*
473996 TCTTCTTGTTTTTCATTTTCTTTT
1 TCTTCTAGTTTTTCATTTTCTTTT
474020 T
1 T
474021 GATCTTGAGA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.04, C:0.16, G:0.04, T:0.76
Consensus pattern (24 bp):
TCTTCTAGTTTTTCATTTTCTTTT
Found at i:474026 original size:24 final size:24
Alignment explanation
Indices: 473979--474027 Score: 71
Period size: 24 Copynumber: 2.0 Consensus size: 24
473969 GTATCTTCTA
* *
473979 GTTTTTCTTTTTCTTTTTCTTCTT
1 GTTTTTCATTTTCTTTTTCATCTT
*
474003 GTTTTTCATTTTCTTTTTGATCTT
1 GTTTTTCATTTTCTTTTTCATCTT
474027 G
1 G
474028 AGAACTCTCC
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
24 22 1.00
ACGTcount: A:0.04, C:0.14, G:0.08, T:0.73
Consensus pattern (24 bp):
GTTTTTCATTTTCTTTTTCATCTT
Found at i:476341 original size:216 final size:213
Alignment explanation
Indices: 475739--476541 Score: 837
Period size: 216 Copynumber: 3.7 Consensus size: 213
475729 CTCGTATCAT
* * * * **
475739 TTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATATTCCGAAAATCCCTTGCTCGGGAAATCG
1 TTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGAAAATTCCATG--CAAGAAATCG
* *
475804 CATTATTTGGTCTAAATAGTTTGTCATTTTGTAAAAAAACTTTTGGT-TTTGAATTAAAATCTTA
64 CATCATTTGGTCTAAATAGTTTGTCATTTTGT--AAAAACTTTTGGTCTTTGAATTAAAAACTTA
** * *
475868 TTTATATGAGAATTGTTTCTCTCTTCGTTCTCGGTCC-AACTTTCGAACTTCTCAAACTTTTACG
127 TTTAGGTGAGAATTGTTTCTCTCTTGGTTCTCGG-CCGAACTTTCGAACTTCACAAACTTTTACG
*
475932 AGTTCTTTTATAACTTTAGTTCA
191 AGTTCTTTTATAACTTTAGTTCC
* * * * *
475955 TTAAAGTATTCAAGACGATCCAATACTTCGAGCAA-TTTTCAGAACATTCCACTTTCGAGAAATC
1 TTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTC-GAAAATTCCA--TGCAAGAAATC
476019 GCATCATTTGGTCTAAATAGTTTGTC-TTCTAT-TAAAAACTTTTGGTCTTTGAATTAAAAACTT
63 GCATCATTTGGTCTAAATAGTTTGTCATT-T-TGTAAAAACTTTTGGTCTTTGAATTAAAAACTT
* * ** * * * * *
476082 ATTTAGGTGAGAATTATTTCACTCTTGGTTAACGACTGAACTTTTGAACTTCACAATC-TTTAGT
126 ATTTAGGTGAGAATTGTTTCTCTCTTGGTTCTCGGCCGAACTTTCGAACTTCACAAACTTTTA-C
* * *
476146 GATTTCTTTTAAAACTTTGGTTCC
190 GAGTTCTTTTATAACTTTAGTTCC
* * * *
476170 TTAAAGTATTCAATACGATCCATTCCTTCGAGCAATTTTTCGAATATTCCATGCAATGCAAAGCA
1 TTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGAAAATTCCATGCAA-G-AAATCG
* ** * * *
476235 CAACATTTAATCTAAATGGTTTTTCATTTTGTAAACAACTTTTGGTCTTTGAGTTAAAAACTTAT
64 CATCATTTGGTCTAAATAGTTTGTCATTTTGTAAA-AACTTTTGGTCTTTGAATTAAAAACTTAT
* **
476300 TTAGGTGAGAATTGTTTCTCTCTTGGTTCTTGGCCGAACTTTCGAACTAGACAAACTTTTACGAG
128 TTAGGTGAGAATTGTTTCTCTCTTGGTTCTCGGCCGAACTTTCGAACTTCACAAACTTTTACGAG
476365 TTCTTTTATAACTTTAGTTCC
193 TTCTTTTATAACTTTAGTTCC
* * * * * * * **
476386 TTAAAGTATTCAAGGCGGTGCATCCCTTCGAACAA-CTTTCTGAACATTCCATGCTCGGTAAATC
1 TTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTC-GAAAATTCCATGC-AAG-AAATC
* * **
476450 GCATCATTTGGTCTACATAGTTTGTAATTTTGTAAAAAAAACTTTTGGTCCCTGAATTAAAAACT
63 GCATCATTTGGTCTAAATAGTTTGTCATTTTGT---AAAAACTTTTGGTCTTTGAATTAAAAACT
* * * *
476515 TATTTATGAGAAAATTATTTCTCTCTT
125 TATTTAGGTGAGAATTGTTTCTCTCTT
476542 TGATACGGCC
Statistics
Matches: 483, Mismatches: 84, Indels: 38
0.80 0.14 0.06
Matches are distributed among these distances:
213 3 0.01
214 20 0.04
215 158 0.33
216 247 0.51
217 5 0.01
218 47 0.10
219 3 0.01
ACGTcount: A:0.29, C:0.18, G:0.14, T:0.39
Consensus pattern (213 bp):
TTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGAAAATTCCATGCAAGAAATCGCA
TCATTTGGTCTAAATAGTTTGTCATTTTGTAAAAACTTTTGGTCTTTGAATTAAAAACTTATTTA
GGTGAGAATTGTTTCTCTCTTGGTTCTCGGCCGAACTTTCGAACTTCACAAACTTTTACGAGTTC
TTTTATAACTTTAGTTCC
Found at i:480231 original size:13 final size:14
Alignment explanation
Indices: 480212--480250 Score: 53
Period size: 13 Copynumber: 2.9 Consensus size: 14
480202 GCAAAGAAAG
480212 TGAAAAGAAAGAGA
1 TGAAAAGAAAGAGA
*
480226 -GAAAAGAAAAAGA
1 TGAAAAGAAAGAGA
*
480239 TGAAAAGGAAGA
1 TGAAAAGAAAGA
480251 AAAAGAGATA
Statistics
Matches: 21, Mismatches: 3, Indels: 2
0.81 0.12 0.08
Matches are distributed among these distances:
13 12 0.57
14 9 0.43
ACGTcount: A:0.67, C:0.00, G:0.28, T:0.05
Consensus pattern (14 bp):
TGAAAAGAAAGAGA
Found at i:488038 original size:216 final size:215
Alignment explanation
Indices: 487297--489252 Score: 1815
Period size: 216 Copynumber: 9.1 Consensus size: 215
487287 TGCTCGCATC
* * * * * * *
487297 ACAATCTTTTACGAGTTGTTTTAAAACTTTGGA-TCCTTAAAGTATTCAATATGATGCATTCCTT
1 ACAAACTTTTACGAGTTCTTTTATAAC-TTCGATTCCTTAAAGTATTCAAGACGATCCATTCCTT
* ** * * * * * *
487361 CTAGCAATTTTTTGAATATTCCATGCTATG-CAAAGCGTAACATTTAGTCTAAATAGTTTGTCAT
65 CGAGCAATTTTCCGAACATTCCATGCT-TGAGAAATCGCATCATTTGGTCTAAATAGTTTGTCAT
* * * *
487425 TTTTTAAGCAACTTTTTGTCTTTGAATTAAAAACTTATTTAGGTGAGAATTGTTTCTCTCTTGGT
129 TTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTAGGTGAAAATT-TTTCTCTCTTGGT
* * *
487490 ACTTGGGCGAACTTCCGAACTTG
193 TCTTGGCCGAACTTTCGAACTTG
* * * * **
487513 ACAAACTTTTACGAGTT-TTATTATAACTTCGGTTCCCTAAAGTATTCAAGATGGTATATTCCTT
1 ACAAACTTTTACGAGTTCTT-TTATAACTTCGATTCCTTAAAGTATTCAAGACGATCCATTCCTT
* * * * *
487577 CGAGCAATTTTCTGAACATTCCATGCTCGGGAAATGGCATCATTTAGT-TAAATAGTTTGTCATT
65 CGAGCAATTTTCCGAACATTCCATGCTTGAGAAATCGCATCATTTGGTCTAAATAGTTTGTCATT
* * *
487641 TTGTAAACAACTTTTGGTCCTTGAATTAAAAACTTATTTATGTGAGAAATGTTTCTCTCTTGGTT
130 TTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTAGGTGA-AAATTTTTCTCTCTTGGTT
*
487706 CTTGGCCGAAC-TTCAAAACTTG
194 CTTGGCCGAACTTTC-GAACTTG
* * *
487728 TC-AA-----ACGAGTTCTTTTATAACTTC-AGTTCCTTAAAGTATTCAAGACAATCCATTCATT
1 ACAAACTTTTACGAGTTCTTTTATAACTTCGA-TTCCTTAAAGTATTCAAGACGATCCATTCCTT
* * * * * * *
487786 CGAGCTATTTTTCAAACATTCCATGCTCGGGAAATTGCATCATTTGGTCAAAATAGTTT-TCAAT
65 CGAGCAATTTTCCGAACATTCCATGCTTGAGAAATCGCATCATTTGGTCTAAATAGTTTGTC-AT
* * * * * *
487850 TATCTAAACAAATTTTTGTCTTTGAATTAAAAACTTATTTAGGTGAAAATTACTTCTCTCTTTGT
129 TTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTAGGTGAAAATT-TTTCTCTCTTGGT
** *
487915 TCACGGCCGAACTTTCGAACTTC
193 TCTTGGCCGAACTTTCGAACTTG
* * * *
487938 ACAATCTTTTAAGAGTTCTTTTATAACTTCGACTCCTTAAAGTATTC-AGAACAATCCATTCCTT
1 ACAAACTTTTACGAGTTCTTTTATAACTTCGATTCCTTAAAGTATTCAAG-ACGATCCATTCCTT
* * * * * *
488002 TGAGAAATTATCCGAACATTCCACGCTTGAGAAATTGCATCATTTGGTCAAAATAGTTT-TCAAT
65 CGAGCAATTTTCCGAACATTCCATGCTTGAGAAATCGCATCATTTGGTCTAAATAGTTTGTC-AT
* * * * ** *
488066 TATCTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTAGGTGAAAATTACTTATCAATTTGT
129 TTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTAGGTGAAAATT-TTTCTCTCTTGGT
** * *
488131 TCACGGTCGAAC-TTCTGAACTTC
193 TCTTGGCCGAACTTTC-GAACTTG
* * * * * *
488154 ACAATCTATTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAGGACAATCCATTCCTTT
1 ACAAACTTTTACGAGTTCTTTTATAACTTCGATTCCTTAAAGTATTCAAGACGATCCATTCCTTC
* * * * * *
488219 GAGAAATTATCCAAACATTCCATG-TTCAAGAAATCACATCAGTTGGTCTAAATAGATTT-TCAT
66 GAGCAATTTTCCGAACATTCCATGCTT-GAGAAATCGCATCATTTGGTCTAAATAG-TTTGTCAT
* ** * *
488282 TTTGTAAACAACTTTTTGTCTTTGAATTAAAAAAATATTTAGGTCAGAATTGTTTCTCTCTTGGT
129 TTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTAGGTGAAAATT-TTTCTCTCTTGGT
* * * *
488347 TCTTAGCCAAACTTTTGAACATG
193 TCTTGGCCGAACTTTCGAACTTG
* * * * * * *
488370 AAAAACTTTTATGAGTTTTTTTATAACTTAGATTGCGTAAAGTATTCAAGACGATCCATTCCTTT
1 ACAAACTTTTACGAGTTCTTTTATAACTTCGATTCCTTAAAGTATTCAAGACGATCCATTCCTTC
* * * * * * * * *
488435 GATCAATTTTCCAAACATTCCATGCTCGGGAAATTGTATCATTTGGTCCAAACAGTTTGTTATTT
66 GAGCAATTTTCCGAACATTCCATGCTTGAGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTT
* * * *
488500 TGTAAACAACTATTGGTCTTTGAATTAAAAACTTATTTAGGTGAGAATTGTTACTCTCTTGGCTC
131 TGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTAGGTGAAAATT-TTTCTCTCTTGGTTC
* **
488565 TCGGTTGAACTTTCGAACTTG
195 TTGGCCGAACTTTCGAACTTG
* * * * * * * * *
488586 GCAAAATTTTATGATTTCATTTA-AATCTTC-AGTTCCTGAAAGCATTTAAGACGATCCTTTCCT
1 ACAAACTTTTACGAGTTCTTTTATAA-CTTCGA-TTCCTTAAAGTATTCAAGACGATCCATTCCT
* ** * * *
488649 TCAAGCAATTTTTTGAACATTCCATGC-TCAGGAAATCGCATCATTTTGTCTAAATGGTTTGTCA
64 TCGAGCAATTTTCCGAACATTCCATGCTTGA-GAAATCGCATCATTTGGTCTAAATAGTTTGTCA
* * * * * *
488713 TTCTGTAAAAAAACTTTTGGCCTTTGAATTAGAAACTTATTTTGGTGAAAATTATTTCTCTCTAG
128 TTTTGT-AAACAACTTTTGGTCTTTGAATTAAAAACTTATTTAGGTGAAAATT-TTTCTCTCTTG
** ** * *
488778 GTTCACGATCGAACTTCCGAACTTT
191 GTTCTTGGCCGAACTTTCGAACTTG
* * * * *
488803 ACAATCTTTTTCAAGTTCTTTTA-AGACTTCGGA-TCCTTAAAGTATTCAATACGATGCATTCCT
1 ACAAACTTTTACGAGTTCTTTTATA-ACTTC-GATTCCTTAAAGTATTCAAGACGATCCATTCCT
** * * * * *
488866 TTTAGCAATTTT-TGCAACATTCCATGCTAT-ATGCAAAGCACAACATTTAGTCTAAATAGTTTG
64 TCGAGCAATTTTCCG-AACATTCCATGCT-TGA-G-AAATCGCATCATTTGGTCTAAATAGTTTG
*
488929 TCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTAGGTGAGAATTGTTTCTCTCT
125 TCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTAGGTGAAAATT-TTTCTCTCT
* * *
488994 TGGTACTTGGTCGAAATTTCGAACTTG
189 TGGTTCTTGGCCGAACTTTCGAACTTG
* * * * *
489021 ACAAACTTTTACGAGTTCTTTTATAACTTTGGTTCCCTAAAGTATTCAAGACGGTGCATTCCTTC
1 ACAAACTTTTACGAGTTCTTTTATAACTTCGATTCCTTAAAGTATTCAAGACGATCCATTCCTTC
* * * * *
489086 GAGCAATTTTCTGAACATTCCATTC-TCAGGAATGGCATCATTTGGT-TAAATAGTTTGTCATTT
66 GAGCAATTTTCCGAACATTCCATGCTTGAGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTT
* * * *
489149 TGTAAACAACTTTTGGTCATTGAATTAAAAACTTATTTACGTGAGAAATGTTTCTCTCTTGATTC
131 TGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTAGGTGA-AAATTTTTCTCTCTTGGTTC
*
489214 TTGGCCGAACTTCCGAACTTG
195 TTGGCCGAACTTTCGAACTTG
* *
489235 TCAAACTTTTATGAGTTC
1 ACAAACTTTTACGAGTTC
489253 CTTAAAGTAT
Statistics
Matches: 1439, Mismatches: 259, Indels: 86
0.81 0.15 0.05
Matches are distributed among these distances:
209 90 0.06
210 80 0.06
211 4 0.00
214 110 0.08
215 119 0.08
216 709 0.49
217 146 0.10
218 144 0.10
219 37 0.03
ACGTcount: A:0.29, C:0.17, G:0.14, T:0.39
Consensus pattern (215 bp):
ACAAACTTTTACGAGTTCTTTTATAACTTCGATTCCTTAAAGTATTCAAGACGATCCATTCCTTC
GAGCAATTTTCCGAACATTCCATGCTTGAGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTT
TGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTAGGTGAAAATTTTTCTCTCTTGGTTCT
TGGCCGAACTTTCGAACTTG
Found at i:488323 original size:432 final size:431
Alignment explanation
Indices: 487295--489575 Score: 2211
Period size: 432 Copynumber: 5.3 Consensus size: 431
487285 CGTGCTCGCA
* * * * * * ** *
487295 TCACAATCTTTTACGAGTTGTTTTAAAACTTTGGATCCTTAAAGTATTCAATATGATGCATTCCT
1 TCACAATCTATTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACAATCCATTCCT
* ** * * * * * *
487360 TCTAGCAATTTTTTGAATATTCCATGCT-ATGCAAAGCGTAACATTTAGTCTAAATAGTTTGTCA
66 TCGAGCAATTTTCCGAACATTCCATGCTCAAG-AAATCGCATCATTTGGTCTAAATAGTTTGTCA
* * * *
487424 TTTTTTAAGCAACTTTTTGTCTTTGAATTAAAAACTTATTTAGGTGAGAATTGTTTCTCTCTTGG
130 TTTTGTAAACAACTTTTTGTCTTTGAATTAAAAACTTATTTAGGTGAAAATTATTTCTCTCTTGG
* * * * * *
487489 TACTTGGGCGAACTTCCGAACTTGACAAACTTTTACGAGTT-TTATTATAACTTCGGTTCCCTAA
195 TTCTTGGCCGAACTTCCGAACTTGACAATCTTTTAAGAGTTCTT-TTATAACTTCGATTCCTTAA
*** ** * * * *
487553 AGTATTCAAGATGGTATATTCCTTCGAGCAATTTTCTGAACATTCCATGCTCGGGAAATGGCATC
259 AGTATTCAAGACAATCCATTCCTTTGAGCAATTTTCCGAACATTCCATGCTCGAGAAATTGCATC
* * * *
487618 ATTTAGT-TAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCCTTGAATTAAAAACTTATTTAT
324 ATTTGGTCAAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTAG
* * *
487682 GTGAGAAATGT-TTCTCTCTTGGTTCTTGGCCGAAC-TTCAAAACT
389 GTGA-AAAT-TCTTCTCTCTTGGTTCTCGGTCGAACTTTC-GAACT
* * * *
487726 T----GTC-A-AACGAGTTCTTTTATAACTTCAGTTCCTTAAAGTATTCAAGACAATCCATTCAT
1 TCACAATCTATTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACAATCCATTCCT
* * * ** * *
487785 TCGAGCTATTTTTCAAACATTCCATGCTCGGGAAATTGCATCATTTGGTCAAAATAGTTT-TCAA
66 TCGAGCAATTTTCCGAACATTCCATGCTCAAGAAATCGCATCATTTGGTCTAAATAGTTTGTC-A
* * * * *
487849 TTATCTAAACAAATTTTTGTCTTTGAATTAAAAACTTATTTAGGTGAAAATTACTTCTCTCTTTG
130 TTTTGTAAACAACTTTTTGTCTTTGAATTAAAAACTTATTTAGGTGAAAATTATTTCTCTCTTGG
** * * *
487914 TTCACGGCCGAACTTTCGAACTTCACAATCTTTTAAGAGTTCTTTTATAACTTCGACTCCTTAAA
195 TTCTTGGCCGAACTTCCGAACTTGACAATCTTTTAAGAGTTCTTTTATAACTTCGATTCCTTAAA
* * * *
487979 GTATTC-AGAACAATCCATTCCTTTGAGAAATTATCCGAACATTCCACGCTTGAGAAATTGCATC
260 GTATTCAAG-ACAATCCATTCCTTTGAGCAATTTTCCGAACATTCCATGCTCGAGAAATTGCATC
* *
488043 ATTTGGTCAAAATAGTTT-TCAATTATCTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTA
324 ATTTGGTCAAAATAGTTTGTC-ATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTA
* ** * *
488107 GGTGAAAATTACTTATCAATTTGTTCACGGTCGAAC-TTCTGAACT
388 GGTGAAAATT-CTTCTCTCTTGGTTCTCGGTCGAACTTTC-GAACT
*
488152 TCACAATCTATTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAGGACAATCCATTCCT
1 TCACAATCTATTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACAATCCATTCCT
* * * * * * *
488217 TTGAGAAATTATCCAAACATTCCATGTTCAAGAAATCACATCAGTTGGTCTAAATAGATTT-TCA
66 TCGAGCAATTTTCCGAACATTCCATGCTCAAGAAATCGCATCATTTGGTCTAAATAG-TTTGTCA
** * * *
488281 TTTTGTAAACAACTTTTTGTCTTTGAATTAAAAAAATATTTAGGTCAGAATTGTTTCTCTCTTGG
130 TTTTGTAAACAACTTTTTGTCTTTGAATTAAAAACTTATTTAGGTGAAAATTATTTCTCTCTTGG
* * ** * * * * * * * *
488346 TTCTTAGCCAAACTTTTGAACATGAAAAACTTTTATGAGTTTTTTTATAACTTAGATTGCGTAAA
195 TTCTTGGCCGAACTTCCGAACTTGACAATCTTTTAAGAGTTCTTTTATAACTTCGATTCCTTAAA
* * * * *
488411 GTATTCAAGACGATCCATTCCTTTGATCAATTTTCCAAACATTCCATGCTCGGGAAATTGTATCA
260 GTATTCAAGACAATCCATTCCTTTGAGCAATTTTCCGAACATTCCATGCTCGAGAAATTGCATCA
* * * *
488476 TTTGGTCCAAACAGTTTGTTATTTTGTAAACAACTATTGGTCTTTGAATTAAAAACTTATTTAGG
325 TTTGGTCAAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTAGG
* * * *
488541 TGAGAATTGTTACTCTCTTGGCTCTCGGTTGAACTTTCGAACT
390 TGAAAATTCTT-CTCTCTTGGTTCTCGGTCGAACTTTCGAACT
* * * * * * * * * *
488584 TGGCAAAAT-T-TTATGATTTCATTTA-AATCTTCAGTTCCTGAAAGCATTTAAGACGATCCTTT
1 T--CACAATCTATTACGAGTTCTTTTATAA-CTTCGGTTCCTTAAAGTATTCAAGACAATCCATT
* ** * * *
488646 CCTTCAAGCAATTTTTTGAACATTCCATGCTCAGGAAATCGCATCATTTTGTCTAAATGGTTTGT
63 CCTTCGAGCAATTTTCCGAACATTCCATGCTCAAGAAATCGCATCATTTGGTCTAAATAGTTTGT
* * * * * *
488711 CATTCTGTAAAAAAACTTTTGGCCTTTGAATTAGAAACTTATTTTGGTGAAAATTATTTCTCTCT
128 CATTTTGT-AAACAACTTTTTGTCTTTGAATTAAAAACTTATTTAGGTGAAAATTATTTCTCTCT
* ** ** * *
488776 AGGTTCACGATCGAACTTCCGAACTTTACAATCTTTTTCA-AGTTCTTTTA-AGACTTCGGA-TC
192 TGGTTCTTGGCCGAACTTCCGAACTTGACAATC-TTTTAAGAGTTCTTTTATA-ACTTC-GATTC
* * * * * **
488838 CTTAAAGTATTCAATACGATGCATTCCTTTTAGCAATTTT-TGCAACATTCCATGCTATATGCAA
254 CTTAAAGTATTCAAGACAATCCATTCCTTTGAGCAATTTTCCG-AACATTCCATGCTCGA-G-AA
*** * * *
488902 AGCACAACATTTAGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAAC
316 ATTGCATCATTTGGTCAAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAAC
* * * * *
488967 TTATTTAGGTGAGAATTGTTTCTCTCTTGGTACTTGGTCGAAATTTCGAACT
381 TTATTTAGGTGAAAATT-CTTCTCTCTTGGTTCTCGGTCGAACTTTCGAACT
* * * * * ** *
489019 TGACAAACTTTTACGAGTTCTTTTATAACTTTGGTTCCCTAAAGTATTCAAGACGGTGCATTCCT
1 TCACAATCTATTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACAATCCATTCCT
* * * *
489084 TCGAGCAATTTTCTGAACATTCCATTCTC-AGGAATGGCATCATTTGGT-TAAATAGTTTGTCAT
66 TCGAGCAATTTTCCGAACATTCCATGCTCAAGAAATCGCATCATTTGGTCTAAATAGTTTGTCAT
* * * * *
489147 TTTGTAAACAACTTTTGGTCATTGAATTAAAAACTTATTTACGTGAGAAA-TGTTTCTCTCTTGA
131 TTTGTAAACAACTTTTTGTCTTTGAATTAAAAACTTATTTAGGTGA-AAATTATTTCTCTCTTGG
*
489211 TTCTTGGCCGAACTTCCGAACTTG----TC----AA-A---CTTTTATGA----G-TTCCTTAAA
195 TTCTTGGCCGAACTTCCGAACTTGACAATCTTTTAAGAGTTCTTTTATAACTTCGATTCCTTAAA
* * * * *
489259 GTATTCAAGACAATCCATTCCTTCGAGCTATTTTTCAAACATTCCATGCTCGAGAAATTGAATCA
260 GTATTCAAGACAATCCATTCCTTTGAGCAATTTTCCGAACATTCCATGCTCGAGAAATTGCATCA
* * *
489324 TTTGGTCAAAATAGTTT-TCAATTATCTAAACAACATTTGGTCTTTGAATTAAAAACTTATTTAG
325 TTTGGTCAAAATAGTTTGTC-ATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTAG
* * * * *
489388 GTGAAAATTACTTCTCTCTTTGTTCACAGCCAAACTTTCGAACT
389 GTGAAAATT-CTTCTCTCTTGGTTCTCGGTCGAACTTTCGAACT
* * * * *
489432 TCACAATCTTTTATGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAGGATAATCCATTCAT
1 TCACAATCTATTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACAATCCATTCCT
* * * *
489497 TCGAGAAATTATCCGAACATTCCATGCTCGAGAAATCGCATCATTTGGTCTAAATAGTTTTTCAT
66 TCGAGCAATTTTCCGAACATTCCATGCTCAAGAAATCGCATCATTTGGTCTAAATAGTTTGTCAT
489562 TTTGTAAACAACTT
131 TTTGTAAACAACTT
489576 GATACGAGAC
Statistics
Matches: 1502, Mismatches: 307, Indels: 98
0.79 0.16 0.05
Matches are distributed among these distances:
412 2 0.00
413 174 0.12
414 18 0.01
415 79 0.05
420 7 0.00
423 2 0.00
424 5 0.00
425 257 0.17
426 81 0.05
427 2 0.00
428 2 0.00
430 2 0.00
431 9 0.01
432 499 0.33
433 164 0.11
434 28 0.02
435 167 0.11
436 4 0.00
ACGTcount: A:0.30, C:0.17, G:0.14, T:0.39
Consensus pattern (431 bp):
TCACAATCTATTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACAATCCATTCCT
TCGAGCAATTTTCCGAACATTCCATGCTCAAGAAATCGCATCATTTGGTCTAAATAGTTTGTCAT
TTTGTAAACAACTTTTTGTCTTTGAATTAAAAACTTATTTAGGTGAAAATTATTTCTCTCTTGGT
TCTTGGCCGAACTTCCGAACTTGACAATCTTTTAAGAGTTCTTTTATAACTTCGATTCCTTAAAG
TATTCAAGACAATCCATTCCTTTGAGCAATTTTCCGAACATTCCATGCTCGAGAAATTGCATCAT
TTGGTCAAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTAGGT
GAAAATTCTTCTCTCTTGGTTCTCGGTCGAACTTTCGAACT
Found at i:489159 original size:649 final size:644
Alignment explanation
Indices: 487353--489575 Score: 2246
Period size: 648 Copynumber: 3.5 Consensus size: 644
487343 CAATATGATG
* * * * * *
487353 CATTCCTTCTAGCAATTTTTTGAATATTCCATGCTATGCAAAGCGTAACATTTAGTCTAAATAGT
1 CATTCCTTCAAGCAATTTTTTGAACATTCCATGCTA-GGAAATCGCATCATTTAGTCTAAATAGT
* * * * *
487418 TTGTCATTTTTTAAGCAACTTTTTGTCTTTGAATTAAAAACTTATTTAGGTGAGAATTGTTTCTC
65 TTGTCA-TTTCTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTAGGTGAAAATTATTTCTC
* ** * * *
487483 TCTTGGTACTTGGGCGAACTTCCGAACTTGACAAACTTTTACGAGTT-TTATTATAACTTCGGTT
129 TCTTGGTTCACGGTCGAACTTCCGAACTTCACAATCTTTTACGAGTTCTT-TTATAACTTCGGTT
* * * * * ***
487547 CCCTAAAGTATTCAAGATGGTATATTCCTTCGAGCAATTTTCTG-AACATTCCATGCTCGGGAAA
193 CCTTAAAGTATTCAAGACGATACATTCCTTTGAGCAATTTT-TGCAACATTCCATGCTTAAGAAA
* *
487611 TG-GCATCATTTAGT-TAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCCTTGAATTAAAAAC
257 -GCACATCATTTAGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAAC
* * * * *
487674 TTATTTATGTGAGAAATGTTTCTCTCTTGGTTCTTGGCCG-AACTTCAAAACTTGTC-AA-----
321 TTATTTAGGTGAGAATTGTTTCTCTCTTGGTTCTTGG-CGAAATTTC-GAACTTGACAAACTTTT
* * * *
487732 ACGAGTTCTTTTATAACTTCA-GTTCCTTAAAGTATTCAAGACAATCCATTCATTCGAGCTATTT
384 ACGAGTTCTTTTATAACTT-AGGTTCCCTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTT
* *
487796 T-TCAAACATTCCATGCTCGGGAAATTGCATCATTTGGTCAAAATAGTTT-TCAATTATCTAAAC
448 TCT-AAACATTCCATGCTCGGGAAATTGCATCATTTGGTCAAAATAGTTTGTC-ATTTTGTAAAC
* * * * * *
487859 AAATTTTTGTCTTTGAATTAAAAACTTATTTAGGTGAAAATTACTTCTCTCTTTGTTCACGGCCG
511 AACTTTTGGTCTTTGAATTAAAAACTTATTTAGGTGAGAATT-GTTCTCTCTTGGTTCTCGGCCG
* * * * * * *
487924 AACTTTCGAACTTCACAATCTTTTAAGAGTTCTTTTATAACTTCGACTCCTTAAAGTATTCAGAA
575 AACTTTCGAACTTGACAAACTTTTATGAGTTCATTTATAACTTCGACTCCTGAAAGCATTAAGAA
487989 CAATC
640 CAATC
** * * ** * * * * *
487994 CATTCCTTTGAGAAATTATCCGAACATTCCACGCTTGAGAAATTGCATCATTTGGTCAAAATAGT
1 CATTCCTTCAAGCAATTTTTTGAACATTCCATGCTAG-GAAATCGCATCATTTAGTCTAAATAGT
* *
488059 TT-TCAATTATCTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTAGGTGAAAATTACTTAT
65 TTGTC-ATT-TCTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTAGGTGAAAATTATTTCT
** * * *
488123 CAATTTGTTCACGGTCGAACTTCTGAACTTCACAATCTATTACGAGTTCTTTTATAACTTCGGTT
128 CTCTTGGTTCACGGTCGAACTTCCGAACTTCACAATCTTTTACGAGTTCTTTTATAACTTCGGTT
* * * * * *
488188 CCTTAAAGTATTCAGGACAATCCATTCCTTTGAG-AAATTATCCAAACATTCCATG-TTCAAGAA
193 CCTTAAAGTATTCAAGACGATACATTCCTTTGAGCAATTTTTGC-AACATTCCATGCTT-AAGAA
* * * *
488251 ATCACATCAGTTGGTCTAAATAGATTT-TCATTTTGTAAACAACTTTTTGTCTTTGAATTAAAAA
256 AGCACATCATTTAGTCTAAATAG-TTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAA
** * * * * * *
488315 AATATTTAGGTCAGAATTGTTTCTCTCTTGGTTCTTAGCCAAACTTTTGAACATGAAAAACTTTT
320 CTTATTTAGGTGAGAATTGTTTCTCTCTTGGTTCTTGGCGAAA-TTTCGAACTTGACAAACTTTT
* * * * * * *
488380 ATGAGTTTTTTTATAACTTAGATTGCGTAAAGTATTCAAGACGATCCATTCCTTTGATCAATTTT
384 ACGAGTTCTTTTATAACTTAGGTTCCCTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTT
* * * * *
488445 CCAAACATTCCATGCTCGGGAAATTGTATCATTTGGTCCAAACAGTTTGTTATTTTGTAAACAAC
449 CTAAACATTCCATGCTCGGGAAATTGCATCATTTGGTCAAAATAGTTTGTCATTTTGTAAACAAC
* * **
488510 TATTGGTCTTTGAATTAAAAACTTATTTAGGTGAGAATTGTTACTCTCTTGGCTCTCGGTTGAAC
514 TTTTGGTCTTTGAATTAAAAACTTATTTAGGTGAGAATTGTT-CTCTCTTGGTTCTCGGCCGAAC
* * * *
488575 TTTCGAACTTGGCAAAATTTTATGATTTCATTTA-AATCTTC-AGTTCCTGAAAGCATTTAAG-A
578 TTTCGAACTTGACAAACTTTTATGAGTTCATTTATAA-CTTCGA-CTCCTGAAAGCA-TTAAGAA
*
488637 CGATC
640 CAATC
* * *
488642 CTTTCCTTCAAGCAATTTTTTGAACATTCCATGCTCAGGAAATCGCATCATTTTGTCTAAATGGT
1 CATTCCTTCAAGCAATTTTTTGAACATTCCATGCT-AGGAAATCGCATCATTTAGTCTAAATAGT
* * * * *
488707 TTGTCATTCTGTAAAAAAACTTTTGGCCTTTGAATTAGAAACTTATTTTGGTGAAAATTATTTCT
65 TTGTCATT-TCT-AAACAACTTTTGGTCTTTGAATTAAAAACTTATTTAGGTGAAAATTATTTCT
* * * * * *
488772 CTCTAGGTTCACGATCGAACTTCCGAACTTTACAATCTTTTTCAAGTTCTTTTA-AGACTTCGGA
128 CTCTTGGTTCACGGTCGAACTTCCGAACTTCACAATCTTTTACGAGTTCTTTTATA-ACTTCGGT
* * * *
488836 TCCTTAAAGTATTCAATACGATGCATTCCTTTTAGCAATTTTTGCAACATTCCATGCTATATGCA
192 TCCTTAAAGTATTCAAGACGATACATTCCTTTGAGCAATTTTTGCAACATTCCATGCT-TAAG-A
*
488901 AAGCACAACATTTAGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAA
255 AAGCACATCATTTAGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAA
*
488966 CTTATTTAGGTGAGAATTGTTTCTCTCTTGGTACTTGGTCGAAATTTCGAACTTGACAAACTTTT
320 CTTATTTAGGTGAGAATTGTTTCTCTCTTGGTTCTTGG-CGAAATTTCGAACTTGACAAACTTTT
* * *
489031 ACGAGTTCTTTTATAACTTTGGTTCCCTAAAGTATTCAAGACGGTGCATTCCTTCGAGCAATTTT
384 ACGAGTTCTTTTATAACTTAGGTTCCCTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTT
* * * * *
489096 CTGAACATTCCATTCTCAGG-AATGGCATCATTTGGT-TAAATAGTTTGTCATTTTGTAAACAAC
449 CTAAACATTCCATGCTCGGGAAATTGCATCATTTGGTCAAAATAGTTTGTCATTTTGTAAACAAC
* * * * *
489159 TTTTGGTCATTGAATTAAAAACTTATTTACGTGAGAAATGTTTCTCTCTTGATTCTTGGCCGAAC
514 TTTTGGTCTTTGAATTAAAAACTTATTTAGGTGAGAATTG-TTCTCTCTTGGTTCTCGGCCGAAC
* * * *
489224 TTCCGAACTTGTCAAACTTTTATGAGTTC-CTTA-AA-GT--A-T--T-----C---AAG-ACAA
578 TTTCGAACTTGACAAACTTTTATGAGTTCATTTATAACTTCGACTCCTGAAAGCATTAAGAACAA
489272 TC
643 TC
* * ** * * * * *
489274 CATTCCTTCGAGCTATTTTTCAAACATTCCATGCTCGAGAAATTGAATCATTTGGTCAAAATAGT
1 CATTCCTTCAAGCAATTTTTTGAACATTCCATGCTAG-GAAATCGCATCATTTAGTCTAAATAGT
* *
489339 TT-TCAATTATCTAAACAACATTTGGTCTTTGAATTAAAAACTTATTTAGGTGAAAATTACTTCT
65 TTGTC-ATT-TCTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTAGGTGAAAATTATTTCT
* * * * * *
489403 CTCTTTGTTCACAGCCAAACTTTCGAACTTCACAATCTTTTATGAGTTCTTTTATAACTTCGGTT
128 CTCTTGGTTCACGGTCGAACTTCCGAACTTCACAATCTTTTACGAGTTCTTTTATAACTTCGGTT
* ** * * * * * * **
489468 CCTTAAAGTATTCAGGATAATCCATTCATTCGAG-AAATTATCCGAACATTCCATGCTCGAGAAA
193 CCTTAAAGTATTCAAGACGATACATTCCTTTGAGCAATTTTTGC-AACATTCCATGCTTAAGAAA
* * * *
489532 TCGCATCATTTGGTCTAAATAGTTTTTCATTTTGTAAACAACTT
257 GCACATCATTTAGTCTAAATAGTTTGTCATTTTGTAAACAACTT
489576 GATACGAGAC
Statistics
Matches: 1296, Mismatches: 246, Indels: 92
0.79 0.15 0.06
Matches are distributed among these distances:
629 42 0.03
630 7 0.01
631 139 0.11
632 68 0.05
636 1 0.00
639 1 0.00
640 10 0.01
641 201 0.16
642 83 0.06
643 8 0.01
645 1 0.00
646 1 0.00
647 6 0.00
648 268 0.21
649 248 0.19
650 28 0.02
651 180 0.14
652 4 0.00
ACGTcount: A:0.30, C:0.18, G:0.14, T:0.39
Consensus pattern (644 bp):
CATTCCTTCAAGCAATTTTTTGAACATTCCATGCTAGGAAATCGCATCATTTAGTCTAAATAGTT
TGTCATTTCTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTAGGTGAAAATTATTTCTCTC
TTGGTTCACGGTCGAACTTCCGAACTTCACAATCTTTTACGAGTTCTTTTATAACTTCGGTTCCT
TAAAGTATTCAAGACGATACATTCCTTTGAGCAATTTTTGCAACATTCCATGCTTAAGAAAGCAC
ATCATTTAGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATT
TAGGTGAGAATTGTTTCTCTCTTGGTTCTTGGCGAAATTTCGAACTTGACAAACTTTTACGAGTT
CTTTTATAACTTAGGTTCCCTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTCTAAACA
TTCCATGCTCGGGAAATTGCATCATTTGGTCAAAATAGTTTGTCATTTTGTAAACAACTTTTGGT
CTTTGAATTAAAAACTTATTTAGGTGAGAATTGTTCTCTCTTGGTTCTCGGCCGAACTTTCGAAC
TTGACAAACTTTTATGAGTTCATTTATAACTTCGACTCCTGAAAGCATTAAGAACAATC
Found at i:489405 original size:199 final size:197
Alignment explanation
Indices: 489052--489451 Score: 486
Period size: 199 Copynumber: 2.0 Consensus size: 197
489042 TATAACTTTG
** * * * *
489052 GTTCCCTAAAGTATTCAAGACGGTGCATTCCTTCGAGCAATTTTCTGAACATTCCATTCTCAGGA
1 GTTCCCTAAAGTATTCAAGACAATCCATTCCTTCGAGCAATTTTCTAAACATTCCATGCTCAGAA
* * * * *
489117 ATGGCATCATTTGGTTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCATTGAATTAAAAACT
66 ATGGAATCATTTGGTAAAATAGTTTGTCATTATCTAAACAACATTTGGTCATTGAATTAAAAACT
*** * **
489182 TATTTACGTGAGAAATGTTTCTCTC-TTGATTCTTGGCCGAACTTCCGAACTTGTCAAACTTTTA
131 TATTTACGTGAGAAATGTTTCTCTCTTTG-TTCACAGCCAAACTTCCGAACTTCACAAACTTTTA
489246 TGA
195 TGA
* *
489249 GTTCCTTAAAGTATTCAAGACAATCCATTCCTTCGAGCTATTTT-TCAAACATTCCATGCTCGAG
1 GTTCCCTAAAGTATTCAAGACAATCCATTCCTTCGAGCAATTTTCT-AAACATTCCATGCTC-AG
* *
489313 AAATTGAATCATTTGGTCAAAATAGTTT-TCAATTATCTAAACAACATTTGGTCTTTGAATTAAA
64 AAATGGAATCATTTGGT-AAAATAGTTTGTC-ATTATCTAAACAACATTTGGTCATTGAATTAAA
* * *
489377 AACTTATTTAGGTGA-AAAT-TACTTCTCTCTTTGTTCACAGCCAAACTTTCGAACTTCACAATC
127 AACTTATTTACGTGAGAAATGT--TTCTCTCTTTGTTCACAGCCAAACTTCCGAACTTCACAAAC
489440 TTTTATGA
190 TTTTATGA
489448 GTTC
1 GTTC
489452 TTTTATAACT
Statistics
Matches: 172, Mismatches: 24, Indels: 12
0.83 0.12 0.06
Matches are distributed among these distances:
196 1 0.01
197 53 0.31
198 22 0.13
199 93 0.54
200 3 0.02
ACGTcount: A:0.29, C:0.19, G:0.14, T:0.38
Consensus pattern (197 bp):
GTTCCCTAAAGTATTCAAGACAATCCATTCCTTCGAGCAATTTTCTAAACATTCCATGCTCAGAA
ATGGAATCATTTGGTAAAATAGTTTGTCATTATCTAAACAACATTTGGTCATTGAATTAAAAACT
TATTTACGTGAGAAATGTTTCTCTCTTTGTTCACAGCCAAACTTCCGAACTTCACAAACTTTTAT
GA
Found at i:490119 original size:24 final size:25
Alignment explanation
Indices: 490095--490142 Score: 62
Period size: 25 Copynumber: 1.9 Consensus size: 25
490085 AAACAACTTC
490095 TAAAAAAAAACTC-AAGAGCAATTCT
1 TAAAAAAAAACTCAAAGAG-AATTCT
* *
490120 TGAAGAAAAACTCAAAGAGAATT
1 TAAAAAAAAACTCAAAGAGAATT
490143 GTAGTCCTTT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
25 15 0.75
26 5 0.25
ACGTcount: A:0.56, C:0.12, G:0.12, T:0.19
Consensus pattern (25 bp):
TAAAAAAAAACTCAAAGAGAATTCT
Found at i:490771 original size:51 final size:51
Alignment explanation
Indices: 490710--490847 Score: 158
Period size: 50 Copynumber: 2.7 Consensus size: 51
490700 TACATGACTT
*
490710 GATTTAATGATGCAAACTTTAACTAACATGGGAGTTACATAATGCATGAT-AG
1 GATTT-ATGATGCAAACTTTAACTAACATGAGAGTTACATAATGCATG-TCAG
* * * *
490762 GATTTATGATGCATA-TTTAACGAACATGTA-AGTTACTTAATGCATGTCAT
1 GATTTATGATGCAAACTTTAACTAACATG-AGAGTTACATAATGCATGTCAG
*
490812 TATTTATGATGCAAAC-TTAACTAATCATGAGAGTTA
1 GATTTATGATGCAAACTTTAACTAA-CATGAGAGTTA
490848 ATGGATGTCA
Statistics
Matches: 73, Mismatches: 8, Indels: 11
0.79 0.09 0.12
Matches are distributed among these distances:
49 1 0.01
50 49 0.67
51 18 0.25
52 5 0.07
ACGTcount: A:0.37, C:0.12, G:0.17, T:0.35
Consensus pattern (51 bp):
GATTTATGATGCAAACTTTAACTAACATGAGAGTTACATAATGCATGTCAG
Found at i:491067 original size:17 final size:17
Alignment explanation
Indices: 491036--491068 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
491026 CAAACACTTA
491036 TTAAACTAAAATAAAAC
1 TTAAACTAAAATAAAAC
491053 TTAAA-TAAAATTAAAA
1 TTAAACTAAAA-TAAAA
491069 AGTCCTTAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 5 0.33
17 10 0.67
ACGTcount: A:0.67, C:0.06, G:0.00, T:0.27
Consensus pattern (17 bp):
TTAAACTAAAATAAAAC
Found at i:500841 original size:39 final size:39
Alignment explanation
Indices: 500795--500893 Score: 171
Period size: 39 Copynumber: 2.5 Consensus size: 39
500785 TTAAATAGGG
500795 TTTTAATGTGTCTTAGTTTGATACATATTTAATAGTTGT
1 TTTTAATGTGTCTTAGTTTGATACATATTTAATAGTTGT
* *
500834 TTTTAATGCGTCTTAGTTTGATACATGTTTAATAGTTGT
1 TTTTAATGTGTCTTAGTTTGATACATATTTAATAGTTGT
*
500873 TTTTAATGTGTCTAAGTTTGA
1 TTTTAATGTGTCTTAGTTTGA
500894 GACAAATTAA
Statistics
Matches: 56, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
39 56 1.00
ACGTcount: A:0.24, C:0.06, G:0.17, T:0.53
Consensus pattern (39 bp):
TTTTAATGTGTCTTAGTTTGATACATATTTAATAGTTGT
Found at i:500980 original size:32 final size:32
Alignment explanation
Indices: 500939--501000 Score: 106
Period size: 32 Copynumber: 1.9 Consensus size: 32
500929 AGACGAAATT
* *
500939 AATTAGCTGATTAATGTGTTTCAGGTACATTC
1 AATTAGCTGATTAATATATTTCAGGTACATTC
500971 AATTAGCTGATTAATATATTTCAGGTACAT
1 AATTAGCTGATTAATATATTTCAGGTACAT
501001 GTAAGGATGG
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
32 28 1.00
ACGTcount: A:0.32, C:0.11, G:0.16, T:0.40
Consensus pattern (32 bp):
AATTAGCTGATTAATATATTTCAGGTACATTC
Found at i:507435 original size:39 final size:39
Alignment explanation
Indices: 507389--507487 Score: 162
Period size: 39 Copynumber: 2.5 Consensus size: 39
507379 TTAAATAGGG
*
507389 TTTTAATGTGTCTTAGTTTGATACATATTTAATAGTTGT
1 TTTTAATGTGTCTTAGTTTGATAAATATTTAATAGTTGT
**
507428 TTTTAATGCATCTTAGTTTGATAAATATTTAATAGTTGT
1 TTTTAATGTGTCTTAGTTTGATAAATATTTAATAGTTGT
*
507467 TTTTAATGTGTCTAAGTTTGA
1 TTTTAATGTGTCTTAGTTTGA
507488 GACAAATTAA
Statistics
Matches: 54, Mismatches: 6, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
39 54 1.00
ACGTcount: A:0.27, C:0.05, G:0.15, T:0.53
Consensus pattern (39 bp):
TTTTAATGTGTCTTAGTTTGATAAATATTTAATAGTTGT
Found at i:507569 original size:32 final size:32
Alignment explanation
Indices: 507533--507595 Score: 99
Period size: 32 Copynumber: 2.0 Consensus size: 32
507523 AGCCGAAATT
* *
507533 AATTAGCTGATTAATGTGTTTCAAGTACATGC
1 AATTAGCTGATTAATATATTTCAAGTACATGC
*
507565 AATTAGCTGATTAATATATTTCAGGTACATG
1 AATTAGCTGATTAATATATTTCAAGTACATG
507596 TATGGTTGGC
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
32 28 1.00
ACGTcount: A:0.33, C:0.11, G:0.17, T:0.38
Consensus pattern (32 bp):
AATTAGCTGATTAATATATTTCAAGTACATGC
Found at i:515273 original size:50 final size:49
Alignment explanation
Indices: 515164--515277 Score: 133
Period size: 50 Copynumber: 2.3 Consensus size: 49
515154 GAGCTAATGG
* * *
515164 ATTACTAAATGCATGACTTGATTTAATGATGCATTTAACTAACATGGGA
1 ATTACTTAATGCATGACTGGATTTAATGATGCATTTAACTAACATGGAA
* * *
515213 GTTACATAATGCATGA-TAGGATTT-ATGATGCATATTTAACTAACATGTAA
1 ATTACTTAATGCATGACT-GGATTTAATGATGC--ATTTAACTAACATGGAA
515263 ATTACTTAATGCATG
1 ATTACTTAATGCATG
515278 TCATTATTTA
Statistics
Matches: 54, Mismatches: 8, Indels: 5
0.81 0.12 0.07
Matches are distributed among these distances:
48 8 0.15
49 18 0.33
50 28 0.52
ACGTcount: A:0.37, C:0.11, G:0.16, T:0.36
Consensus pattern (49 bp):
ATTACTTAATGCATGACTGGATTTAATGATGCATTTAACTAACATGGAA
Found at i:515287 original size:50 final size:49
Alignment explanation
Indices: 515164--515305 Score: 121
Period size: 50 Copynumber: 2.9 Consensus size: 49
515154 GAGCTAATGG
* * *
515164 ATTACTAAATGCATGAC-TTGATTTAATGATGC-ATTTAACTAACATGGGA
1 ATTACTTAATGCATGTCATT-ATTT-ATGATGCAATTTAACTAACATGGAA
* * ** *
515213 GTTACATAATGCATGAT-AGGATTTATGATGCATATTTAACTAACATGTAA
1 ATTACTTAATGCATG-TCATTATTTATGATGCA-ATTTAACTAACATGGAA
*
515263 ATTACTTAATGCATGTCATTATTTA-CACTGCAAATTTAACTAA
1 ATTACTTAATGCATGTCATTATTTATGA-TGC-AATTTAACTAA
515306 TCATTAGAGT
Statistics
Matches: 73, Mismatches: 13, Indels: 13
0.74 0.13 0.13
Matches are distributed among these distances:
48 7 0.10
49 18 0.25
50 47 0.64
51 1 0.01
ACGTcount: A:0.37, C:0.13, G:0.13, T:0.37
Consensus pattern (49 bp):
ATTACTTAATGCATGTCATTATTTATGATGCAATTTAACTAACATGGAA
Found at i:516675 original size:3 final size:3
Alignment explanation
Indices: 516667--516702 Score: 72
Period size: 3 Copynumber: 12.0 Consensus size: 3
516657 TTCAACTAGC
516667 TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT
1 TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT
516703 GATTGAATTT
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 33 1.00
ACGTcount: A:0.00, C:0.33, G:0.00, T:0.67
Consensus pattern (3 bp):
TCT
Found at i:517483 original size:216 final size:216
Alignment explanation
Indices: 516944--517853 Score: 1041
Period size: 216 Copynumber: 4.2 Consensus size: 216
516934 TTCGGCCGTG
* * * * * *
516944 AACCTAGAAAGAAACAATTCTAACCTAAATATGCATTTAATTCAATGACCAAAACTTATTTACAA
1 AACCTAGAGAGAAACAATTCTCACCTAAATAAGCTTTTAATTCAACGACCAAAAGTTATTTACAA
* * * *
517009 AATGACAGACTATTTATACCAAATGATGTGATTTCCCGAGCATGGAGTG-TTAAGAAAATTGT-A
66 AATGACAAACTATTTAGACCAAATGATGTGATTTCCCGAGCATGGAATGCTCAA-AAAATT-TCA
* * *
517072 CGAAATAATGGATAATCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAACTCGTAAAAAGTTT
129 CAAAAGAATGGATCATCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAACTCGT-AAAAGTTT
* *
517137 GACAAGTTCAGAA-TTTCGATCGAA
193 GACAAGTTCAGAAGTTT-AATCGTA
* * * ** *
517161 AACCAAGAGAAAAACAATTCTC-CCGTAAATAAG-TTTCTAATTCAAAGGTCAAAAGTTGTTTAC
1 AACCTAGAGAGAAACAATTCTCACC-TAAATAAGCTTT-TAATTCAACGACCAAAAGTTATTTAC
* * * * * * *
517224 AAAATGACAAACTATATAGACCAAATGTTGCGGTTTGCCGAGCATGGAATGCTCGAAAAATTTCT
64 AAAATGACAAACTATTTAGACCAAATGATGTGATTTCCCGAGCATGGAATGCTCAAAAAATTTCA
* ** * *
517289 CGACGGAATGGATCGTCTTGTATACTTTAAGGAACCAAAGTTATAAAAGAACTCGTAAAAGTTTG
129 CAAAAGAATGGATCATCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAACTCGTAAAAGTTTG
517354 TA-AAGTTC-GAAAGTTTAA-CTGTA
194 -ACAAGTTCAG-AAGTTTAATC-GTA
517377 AACCTAGAGAGAAACAATTCTCACCTAAATAAGCTTTTAATTCAACGACCAAAAGTTATTTACAA
1 AACCTAGAGAGAAACAATTCTCACCTAAATAAGCTTTTAATTCAACGACCAAAAGTTATTTACAA
* * * * ** ** *
517442 AAGGACAAAATATTTAGACCAAATGATGTGATTTCCCGAGCACGGACTATTCCGAAAATTGCACA
66 AATGACAAACTATTTAGACCAAATGATGTGATTTCCCGAGCATGGAATGCTCAAAAAATTTCACA
* * *
517507 AAGGATTGGATCATCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAAATCGTAAAAGTTTGTA
131 AAAGAATGGATCATCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAACTCGTAAAAGTTTG-A
* * *
517572 -AAGTTCGGAAGTTCAATCGTG
195 CAAGTTCAGAAGTTTAATCGTA
* * * * *
517593 AAGCTAGAGAGAAACAGTTCTCACCTAAATAAGCTTTTAATTGAACGACCAAAAGTTATTCATAA
1 AACCTAGAGAGAAACAATTCTCACCTAAATAAGCTTTTAATTCAACGACCAAAAGTTATTTACAA
* * *
517658 AATGACAAACTATTTAAACCAAATGATGTGATTTCCCGAGCATGGAATGTTCAAAAAATTACACA
66 AATGACAAACTATTTAGACCAAATGATGTGATTTCCCGAGCATGGAATGCTCAAAAAATTTCACA
* * * *
517723 AAAGAATGGATCGTCTTGAATACTTTAAGGAACCAAATTTATAAAAGAACTTGTAAATGTTTGAC
131 AAAGAATGGATCATCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAACTCGTAAAAGTTTGAC
* *
517788 AAGGTCAGAAGTTT-AGC-TGA
196 AAGTTCAGAAGTTTAATCGT-A
* * * *
517808 GAACCAAGAGAGAAAGAATTCTCACATAAATAAGTTTTTAATTCAA
1 -AACCTAGAGAGAAACAATTCTCACCTAAATAAGCTTTTAATTCAA
517854 AGATTAAAAG
Statistics
Matches: 586, Mismatches: 92, Indels: 31
0.83 0.13 0.04
Matches are distributed among these distances:
214 1 0.00
215 5 0.01
216 422 0.72
217 156 0.27
218 2 0.00
ACGTcount: A:0.41, C:0.15, G:0.16, T:0.27
Consensus pattern (216 bp):
AACCTAGAGAGAAACAATTCTCACCTAAATAAGCTTTTAATTCAACGACCAAAAGTTATTTACAA
AATGACAAACTATTTAGACCAAATGATGTGATTTCCCGAGCATGGAATGCTCAAAAAATTTCACA
AAAGAATGGATCATCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAACTCGTAAAAGTTTGAC
AAGTTCAGAAGTTTAATCGTA
Found at i:517999 original size:186 final size:186
Alignment explanation
Indices: 517679--518042 Score: 498
Period size: 186 Copynumber: 2.0 Consensus size: 186
517669 ATTTAAACCA
* * * *
517679 AATGATGTGATTTCCCGAGCATGGAATGTTCAAAAAATTACACAAAAGAATGGATCGTCTTGAAT
1 AATGATGCGATTTCCCAAGCATGCAATGTTCAAAAAATTACACAAAAGAATGGATCGTCCTGAAT
* * * **
517744 ACTTTAAGGAACCAAATTTATAAAAGAACTTGTAAATGTTTGACAAGGTCAGAAGTTTAGCTGAG
66 ACTTTAAGGAACCAAAGTTATAAAAGAACTCGTAAATGTTTGACAAGGTCAGAAGTTCAGCCAAG
* * *
517809 AACCAAGAGAGAAAGAATTCTCACATAAATAAGTTTTTAATTCAAAGATTAAAAGT
131 AACCAAGAGAGAAACAATTATCACATAAATAAGTTCTTAATTCAAAGATTAAAAGT
* * * *
517865 AATGATGCGATTTCCCAAGCATGCAATGTTCCAAAAATTACTCGAAGGAATGGATCGTCCTGAAT
1 AATGATGCGATTTCCCAAGCATGCAATGTTCAAAAAATTACACAAAAGAATGGATCGTCCTGAAT
* * * *
517930 ACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAT-TTTGTCATGTTC-GAAAGTTCAGCCA
66 ACTTTAAGGAACCAAAGTTATAAAAGAACTCGT-AAATGTTTGACAAGGTCAG-AAGTTCAGCCA
* *
517993 AGAACCAAGAGAGAAACAATTATCACGTCAATAAGTTCTTAATTCAAAGA
129 AGAACCAAGAGAGAAACAATTATCACATAAATAAGTTCTTAATTCAAAGA
518043 CCAAACATTT
Statistics
Matches: 154, Mismatches: 22, Indels: 4
0.86 0.12 0.02
Matches are distributed among these distances:
185 1 0.01
186 149 0.97
187 4 0.03
ACGTcount: A:0.41, C:0.15, G:0.18, T:0.27
Consensus pattern (186 bp):
AATGATGCGATTTCCCAAGCATGCAATGTTCAAAAAATTACACAAAAGAATGGATCGTCCTGAAT
ACTTTAAGGAACCAAAGTTATAAAAGAACTCGTAAATGTTTGACAAGGTCAGAAGTTCAGCCAAG
AACCAAGAGAGAAACAATTATCACATAAATAAGTTCTTAATTCAAAGATTAAAAGT
Found at i:518259 original size:215 final size:214
Alignment explanation
Indices: 517865--518526 Score: 859
Period size: 216 Copynumber: 3.1 Consensus size: 214
517855 GATTAAAAGT
* * *
517865 AATGATGCGATTTCCCA-AGCATGCAATGTTCCAAAAATTACTCGAAGGAATGGATCGTCCTGAA
1 AATGATGCGATTT-CTAGAGCATGGAATGTTCCAAAAATTACTCGAAGGAATGGATCGT-CTTAA
* * * * * * *
517929 TACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAATTTTGTCATGTTCGAAAGTTCAGCCAA
64 TACTTTAAGGAACCGAAGTTATAAAAGAACTCATAAAAGTTTGACAAGTTTGGAAGTTTAGCCAA
* * *
517994 GAACCAAGAGAGAAACAATTATCACGTCAATAAGTTCTTAATTCAAAGACCAAACA-TTTTTTAC
129 GAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT-TTAATTAAAAGACCAAA-AGTTTTTTAC
*
518058 AAAATGAC-AACAATTTAGACCA
192 AAAATGACAAACTATTTAGACCA
* * *
518080 AATGATGTGATTTCTAGAGCGTGGAATGTTCCAAAAAATT-CTCGAAGGAATGGATCATCATTAA
1 AATGATGCGATTTCTAGAGCATGGAATGTTCC-AAAAATTACTCGAAGGAATGGATCGTC-TTAA
518144 TACTTTAAGGAACCGAAGTTATAAAAGAACTCATAAAAGTTTGACAAGTTTGGAAGTTTAGCTC-
64 TACTTTAAGGAACCGAAGTTATAAAAGAACTCATAAAAGTTTGACAAGTTTGGAAGTTTAGC-CA
* * * * *
518208 AGAACCAAGAGCGGAACAATTCTTACGTAAATAAGCTTTTAATTTAAAGACCAAAAGTTGTTTAC
128 AGAACCAAGAGAGAAACAATTCTCACGTAAATAAG-TTTTAATTAAAAGACCAAAAGTTTTTTAC
518273 AAAATGACAAACTATTTAGACCA
192 AAAATGACAAACTATTTAGACCA
* * **** * *
518296 AATGATGCAATTTCTCGAGCATGGAATGTTTTGGAAATTACTCGAAGGATTGGATCGTCTTAAAC
1 AATGATGCGATTTCTAGAGCATGGAATGTTCCAAAAATTACTCGAAGGAATGGATCGTCTT-AAT
* * * * *
518361 ACTTTAAGGAATCGAAGTTATAAAAGAACTCATAAATGTTTGCCAAGTTTGGAAG-TTCGACCGA
65 ACTTTAAGGAACCGAAGTTATAAAAGAACTCATAAAAGTTTGACAAGTTTGGAAGTTTAG-CCAA
518425 GAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTAAAAGACCAAAAGTTTTTTACA
129 GAACCAAGAGAGAAACAATTCTCACGTAAATAAG-TTTTAATTAAAAGACCAAAAGTTTTTTACA
*
518490 AAATGACAAACTATTTAGACTA
193 AAATGACAAACTATTTAGACCA
518512 AATGATGCGATTTCT
1 AATGATGCGATTTCT
518527 TGGCTTGTGC
Statistics
Matches: 392, Mismatches: 44, Indels: 21
0.86 0.10 0.05
Matches are distributed among these distances:
214 4 0.01
215 172 0.44
216 216 0.55
ACGTcount: A:0.40, C:0.15, G:0.17, T:0.28
Consensus pattern (214 bp):
AATGATGCGATTTCTAGAGCATGGAATGTTCCAAAAATTACTCGAAGGAATGGATCGTCTTAATA
CTTTAAGGAACCGAAGTTATAAAAGAACTCATAAAAGTTTGACAAGTTTGGAAGTTTAGCCAAGA
ACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTAATTAAAAGACCAAAAGTTTTTTACAAAA
TGACAAACTATTTAGACCA
Found at i:518457 original size:617 final size:618
Alignment explanation
Indices: 517264--518473 Score: 1565
Period size: 617 Copynumber: 2.0 Consensus size: 618
517254 CGGTTTGCCG
* * * * * *
517264 AGCATGGAATGCTCGAAAAATTTCTCGACGGAATGGATCGTCTTGTATACTTTAAGGAACCAAAG
1 AGCATGCAATGCTCCAAAAATTACTCGAAGGAATGGATCGTCCTGAATACTTTAAGGAACCAAAG
* ** *
517329 TTATAAAAGAACTCGTAAAAGTTTGTAAAGTTCGAAAGTTTAACTGTAAACCTAGAGAGAAACAA
66 TTATAAAAGAACTCGTAAAAGTTTGTAAAGTTCGAAAGTTCAACTCAAAACCAAGAGAGAAACAA
* *
517394 TTCTCACCTAAATAAGCTTTTAATTCAACGACCAAAAGTTATTTACAAAAGGACAAAATATTTAG
131 TTATCACCTAAATAAGCTTTTAATTCAAAGACCAAAAGTTATTTACAAAAGGACAAAATATTTAG
* * * *
517459 ACCAAATGATGTGATTTCCCGAGCACGGACTATTCCGAAAATTGCACAAAGGATTGGATCATCTT
196 ACCAAATGATGTGATTTCCAGAGCACGGAATATTCCAAAAATTGCACAAAGGAATGGATCATCTT
*
517524 GAATACTTTAAGGAACCAAAGTTATAAAAGAAATCGTAAAAGTTTGTAAAGTTCGGAAGTTCAAT
261 GAATACTTTAAGGAACCAAAGTTATAAAAGAAATCATAAAAGTTTGTAAAGTTCGGAAGTTCAAT
* * * * *
517589 CGTGAAGCTAGAGAGAAACAGTTCTCACCTAAATAAGCTTTTAATTGAACGACCAAAAGTTATTC
326 CGAGAACCAAGAGAGAAACAATTCTCACCTAAATAAGCTTTTAATTGAAAGACCAAAAGTTATTC
* **
517654 ATAAAATGACAAACTATTTAAACCAAATGATGTGATTTCCCGAGCATGGAATGTTCAAAAAATTA
391 ACAAAATGACAAACTATTTAAACCAAATGATGCAATTTCCCGAGCATGGAATGTTCAAAAAATTA
* * * **
517719 CACAAAAGAATGGATCGTCTTGAATACTTTAAGGAACCAAATTTATAAAAGAACTTGTAAATGTT
456 CACAAAAGAATGGATCGTCTTAAACACTTTAAGGAACCAAAGTTATAAAAGAACTCATAAATGTT
* * *
517784 TGACAAGGTCAGAAGTTTAGCTGAGAACCAAGAGAGAAAGAATTCTCACATAAATAAGTTTTTAA
521 TGACAAGGTCAGAAGTTGAGCCGAGAACCAAGAGAGAAACAATTCTCACATAAATAAGTTTTTAA
*
517849 TTCAAAGATTAAAAGTAATGATGCGATTTCCCA
586 TTAAAAGATTAAAAGTAATGATGCGATTTCCCA
* *
517882 AGCATGCAATGTTCCAAAAATTACTCGAAGGAATGGATCGTCCTGAATACTTTAAGGAACCGAAG
1 AGCATGCAATGCTCCAAAAATTACTCGAAGGAATGGATCGTCCTGAATACTTTAAGGAACCAAAG
* * * *
517947 TTATAAAAGAACTCGTAAAATTTTGTCATGTTCGAAAGTTCAGC-CAAGAACCAAGAGAGAAACA
66 TTATAAAAGAACTCGTAAAAGTTTGTAAAGTTCGAAAGTTCAACTCAA-AACCAAGAGAGAAACA
* * * * *
518011 ATTATCACGTCAATAAG-TTCTTAATTCAAAGACCAAACA-TTTTTTACAAAATGACAACA-ATT
130 ATTATCACCTAAATAAGCTT-TTAATTCAAAGACCAAA-AGTTATTTACAAAAGGACAAAATATT
* ** * * *
518073 TAGACCAAATGATGTGATTTCTAGAGCGTGGAATGTTCCAAAAAATT-CTCGAAGGAATGGATCA
193 TAGACCAAATGATGTGATTTCCAGAGCACGGAATATTCC-AAAAATTGCACAAAGGAATGGATCA
* * *
518137 TCATT-AATACTTTAAGGAACCGAAGTTATAAAAGAACTCATAAAAGTTTG-ACAAGTTTGGAAG
257 TC-TTGAATACTTTAAGGAACCAAAGTTATAAAAGAAATCATAAAAGTTTGTA-AAGTTCGGAAG
* * * * * * *
518200 TTTAGCTC-AGAACCAAGAGCGGAACAATTCTTACGTAAATAAGCTTTTAATTTAAAGACCAAAA
320 TTCA-ATCGAGAACCAAGAGAGAAACAATTCTCACCTAAATAAGCTTTTAATTGAAAGACCAAAA
* * * * ***
518264 GTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCAATTTCTCGAGCATGGAATGTTTTG
384 GTTATTCACAAAATGACAAACTATTTAAACCAAATGATGCAATTTCCCGAGCATGGAATGTTCAA
* * * * * * *
518329 GAAATTACTCGAAGGATTGGATCGTCTTAAACACTTTAAGGAATCGAAGTTATAAAAGAACTCAT
449 AAAATTACACAAAAGAATGGATCGTCTTAAACACTTTAAGGAACCAAAGTTATAAAAGAACTCAT
* * ** *
518394 AAATGTTTGCCAAGTTTGGAAGTTCGA-CCGAGAACCAAGAGAGAAACAATTCTCACGTAAATAA
514 AAATGTTTGACAAGGTCAGAAGTT-GAGCCGAGAACCAAGAGAGAAACAATTCTCACATAAATAA
518458 GTTTTTAATTAAAAGA
578 GTTTTTAATTAAAAGA
518474 CCAAAAGTTT
Statistics
Matches: 504, Mismatches: 80, Indels: 17
0.84 0.13 0.03
Matches are distributed among these distances:
616 1 0.00
617 333 0.66
618 169 0.34
619 1 0.00
ACGTcount: A:0.40, C:0.15, G:0.17, T:0.27
Consensus pattern (618 bp):
AGCATGCAATGCTCCAAAAATTACTCGAAGGAATGGATCGTCCTGAATACTTTAAGGAACCAAAG
TTATAAAAGAACTCGTAAAAGTTTGTAAAGTTCGAAAGTTCAACTCAAAACCAAGAGAGAAACAA
TTATCACCTAAATAAGCTTTTAATTCAAAGACCAAAAGTTATTTACAAAAGGACAAAATATTTAG
ACCAAATGATGTGATTTCCAGAGCACGGAATATTCCAAAAATTGCACAAAGGAATGGATCATCTT
GAATACTTTAAGGAACCAAAGTTATAAAAGAAATCATAAAAGTTTGTAAAGTTCGGAAGTTCAAT
CGAGAACCAAGAGAGAAACAATTCTCACCTAAATAAGCTTTTAATTGAAAGACCAAAAGTTATTC
ACAAAATGACAAACTATTTAAACCAAATGATGCAATTTCCCGAGCATGGAATGTTCAAAAAATTA
CACAAAAGAATGGATCGTCTTAAACACTTTAAGGAACCAAAGTTATAAAAGAACTCATAAATGTT
TGACAAGGTCAGAAGTTGAGCCGAGAACCAAGAGAGAAACAATTCTCACATAAATAAGTTTTTAA
TTAAAAGATTAAAAGTAATGATGCGATTTCCCA
Found at i:519120 original size:216 final size:216
Alignment explanation
Indices: 518741--519674 Score: 1110
Period size: 216 Copynumber: 4.4 Consensus size: 216
518731 TGTTACATCA
* * * * * * *
518741 GAATGTTTAGAAAATTGCTTGAAGGAAAGGATCATCTTAAATACTTTCAGGAACCGAAGTTTTAA
1 GAATGTTTGGAAAATTGCTCGAAGGAATGGATCCTCTTGAATACTTTAAGGAACCGAAGTTATAA
* * * * * * *
518806 ATGAAGTCATAAAATTTTGTCAAGTTCAGAAGTTCGATCGAGAACCAAGAGACAAACAATTCTCA
66 AAGAACTCGTAAAAGTTTGTCAAGTTCAGAAGTTCGACCAAGAACCAAGAGAGAAACAATTCTCA
* * *
518871 CCTAAATAAGTTTTTAATTCAAACACCAAAAGTTGTTTGCAAAATGACAAACTATTTAGACCAAA
131 CCTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGAAAAACTATTTAGACCAAA
518936 TGATGTGATTTCCCGAGCATG
196 TGATGTGATTTCCCGAGCATG
* * *
518957 GAATGTTTGGAAAATTGATCGAAGGAATGGATCCTCTTGAATACTTTGAGGAACCAAAGTTATAA
1 GAATGTTTGGAAAATTGCTCGAAGGAATGGATCCTCTTGAATACTTTAAGGAACCGAAGTTATAA
* * * * *
519022 AAGAACTTGTAAAAGTTTGTCATGTTCA-AATGCTCGACCAAGAACCAAGAGAGAAATAATTCTT
66 AAGAACTCGTAAAAGTTTGTCAAGTTCAGAA-GTTCGACCAAGAACCAAGAGAGAAACAATTCTC
* *
519086 ACCTAAATATGTTTTTAATTCAAAGACAAAAAGTTGTTTACAAAATGAAAAACTATTTAGACCAA
130 ACCTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGAAAAACTATTTAGACCAA
*
519151 ATGATGTGATTTCTCGAGCATG
195 ATGATGTGATTTCCCGAGCATG
* * * * ** *
519173 GAATGTTCGAAAAATTTCTCGAAGGAATAGATAGTCTTGAATACTTTAAGGAATCGAAGTTATAA
1 GAATGTTTGGAAAATTGCTCGAAGGAATGGATCCTCTTGAATACTTTAAGGAACCGAAGTTATAA
* * * * * * ** *
519238 AAGAACTCGTAAAAGATTGTTAAGTACAGAAGTTCGACCATGAACAAAAAGAGAAGTAATTTTCA
66 AAGAACTCGTAAAAGTTTGTCAAGTTCAGAAGTTCGACCAAGAACCAAGAGAGAAACAATTCTCA
* *
519303 CCTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAGAATAAAAAACTATTTAGACCAAA
131 CCTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGAAAAACTATTTAGACCAAA
*
519368 TGATGTTATTTCCCGAGCATG
196 TGATGTGATTTCCCGAGCATG
* * * * * * *
519389 GAATGTTTGGTAAATAGCTCGAAGGAACGGATCGTCTTAAATAATTTAAGGAA-CTACAGTTATA
1 GAATGTTTGGAAAATTGCTCGAAGGAATGGATCCTCTTGAATACTTTAAGGAACCGA-AGTTATA
* *
519453 AAAGAACTCATAAAAGTTTGACAAGTTCAGAAGTTCGACC-AGAAACCAAGAGAGAAACAATTCT
65 AAAGAACTCGTAAAAGTTTGTCAAGTTCAGAAGTTCGACCAAG-AACCAAGAGAGAAACAATTCT
* *
519517 CACCTAAATAAGTTTTTAATTCAAGGACCAAAA--TG---AC--------AAACTATTCAGACCA
129 CACCTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGAAAAACTATTTAGACCA
* *
519569 AATGATGCGATTTCCCGATCATG
194 AATGATGTGATTTCCCGAGCATG
*** * * *
519592 GAATGTTCATAAAATTGCTCGAAGGAATGCA-CCGTCTTGAGTACTTTAAGGAATCGAAGTTATA
1 GAATGTTTGGAAAATTGCTCGAAGGAATGGATCC-TCTTGAATACTTTAAGGAACCGAAGTTATA
*
519656 AAAGAAGTCGTAAAAGTTT
65 AAAGAACTCGTAAAAGTTT
519675 TATAAAAATA
Statistics
Matches: 616, Mismatches: 96, Indels: 25
0.84 0.13 0.03
Matches are distributed among these distances:
202 1 0.00
203 98 0.16
204 2 0.00
211 2 0.00
214 2 0.00
215 5 0.01
216 504 0.82
217 2 0.00
ACGTcount: A:0.40, C:0.14, G:0.17, T:0.28
Consensus pattern (216 bp):
GAATGTTTGGAAAATTGCTCGAAGGAATGGATCCTCTTGAATACTTTAAGGAACCGAAGTTATAA
AAGAACTCGTAAAAGTTTGTCAAGTTCAGAAGTTCGACCAAGAACCAAGAGAGAAACAATTCTCA
CCTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGAAAAACTATTTAGACCAAA
TGATGTGATTTCCCGAGCATG
Found at i:520333 original size:5 final size:5
Alignment explanation
Indices: 520323--520399 Score: 100
Period size: 5 Copynumber: 15.2 Consensus size: 5
520313 GTGAGGATTT
* * * *
520323 TTTTC TTTTC TTTTC TTTTC CTTTC TTTTC CTTTC CTTTC CTTTC TTTTC
1 TTTTC TTTTC TTTTC TTTTC TTTTC TTTTC TTTTC TTTTC TTTTC TTTTC
*
520373 TTTTC TTTTA TTTTC TTTTTC TTTTC T
1 TTTTC TTTTC TTTTC -TTTTC TTTTC T
520400 GGTTCGAACC
Statistics
Matches: 65, Mismatches: 6, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
5 60 0.92
6 5 0.08
ACGTcount: A:0.01, C:0.23, G:0.00, T:0.75
Consensus pattern (5 bp):
TTTTC
Found at i:522050 original size:21 final size:20
Alignment explanation
Indices: 522021--522062 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 20
522011 ATGAGCCCAA
522021 TATTGTATTATCATTTCTTAT
1 TATTGTATTATCATTT-TTAT
* *
522042 TATTTTATTATTATTTTTAT
1 TATTGTATTATCATTTTTAT
522062 T
1 T
522063 CTGAATTTTG
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
20 5 0.26
21 14 0.74
ACGTcount: A:0.24, C:0.05, G:0.02, T:0.69
Consensus pattern (20 bp):
TATTGTATTATCATTTTTAT
Found at i:524608 original size:12 final size:12
Alignment explanation
Indices: 524591--524631 Score: 50
Period size: 12 Copynumber: 3.5 Consensus size: 12
524581 TTCGCAAGAG
524591 GAAAAAGAAAAT
1 GAAAAAGAAAAT
*
524603 GAAAAACAAGAA-
1 GAAAAAGAA-AAT
524615 GAAAAAGAAAAT
1 GAAAAAGAAAAT
524627 -AAAAA
1 GAAAAA
524632 CAAGAAGATA
Statistics
Matches: 25, Mismatches: 2, Indels: 5
0.78 0.06 0.16
Matches are distributed among these distances:
11 7 0.28
12 16 0.64
13 2 0.08
ACGTcount: A:0.78, C:0.02, G:0.15, T:0.05
Consensus pattern (12 bp):
GAAAAAGAAAAT
Found at i:524630 original size:23 final size:24
Alignment explanation
Indices: 524585--524639 Score: 94
Period size: 24 Copynumber: 2.3 Consensus size: 24
524575 GGAGAGTTCG
*
524585 CAAGAGGAAAAAGAAAATGAAAAA
1 CAAGAAGAAAAAGAAAATGAAAAA
524609 CAAGAAGAAAAAGAAAAT-AAAAA
1 CAAGAAGAAAAAGAAAATGAAAAA
524632 CAAGAAGA
1 CAAGAAGA
524640 TACTCATACA
Statistics
Matches: 30, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
23 13 0.43
24 17 0.57
ACGTcount: A:0.73, C:0.05, G:0.18, T:0.04
Consensus pattern (24 bp):
CAAGAAGAAAAAGAAAATGAAAAA
Found at i:531206 original size:29 final size:30
Alignment explanation
Indices: 531133--531206 Score: 69
Period size: 29 Copynumber: 2.5 Consensus size: 30
531123 TAAATAAGTC
*
531133 AAATATATCGATTTTAAAAATTAATTAGGT
1 AAATATATCGATTTTAAAAATTAATTAGGG
*** ** * *
531163 CTTTAGGTCGGTTTT-AAAATTATTTAGGG
1 AAATATATCGATTTTAAAAATTAATTAGGG
531192 AAATATATCGATTTT
1 AAATATATCGATTTT
531207 GAGGCTAAAC
Statistics
Matches: 30, Mismatches: 14, Indels: 1
0.67 0.31 0.02
Matches are distributed among these distances:
29 21 0.70
30 9 0.30
ACGTcount: A:0.36, C:0.05, G:0.15, T:0.43
Consensus pattern (30 bp):
AAATATATCGATTTTAAAAATTAATTAGGG
Found at i:533377 original size:17 final size:15
Alignment explanation
Indices: 533340--533381 Score: 52
Period size: 13 Copynumber: 2.8 Consensus size: 15
533330 TAAATTTTAT
533340 TTTAAATATTTTGTA
1 TTTAAATATTTTGTA
533355 --TAAATATTTTCGTAA
1 TTTAAATATTTT-GT-A
533370 TTTAAATATTTT
1 TTTAAATATTTT
533382 AAATTTAGAT
Statistics
Matches: 23, Mismatches: 0, Indels: 6
0.79 0.00 0.21
Matches are distributed among these distances:
13 10 0.43
14 2 0.09
15 1 0.04
17 10 0.43
ACGTcount: A:0.36, C:0.02, G:0.05, T:0.57
Consensus pattern (15 bp):
TTTAAATATTTTGTA
Found at i:533433 original size:21 final size:20
Alignment explanation
Indices: 533373--533433 Score: 61
Period size: 21 Copynumber: 2.9 Consensus size: 20
533363 TTCGTAATTT
533373 AAATATTTTAAATTTAGATTGA
1 AAATATTTTAAATTT--ATTGA
* *
533395 AAATA-TTGATAATATATTGCA
1 AAATATTTTA-AATTTATTG-A
533416 AAATATTTTAAATTTATT
1 AAATATTTTAAATTTATT
533434 ATCTGTAAAT
Statistics
Matches: 32, Mismatches: 4, Indels: 7
0.74 0.09 0.16
Matches are distributed among these distances:
20 4 0.12
21 16 0.50
22 12 0.38
ACGTcount: A:0.46, C:0.02, G:0.07, T:0.46
Consensus pattern (20 bp):
AAATATTTTAAATTTATTGA
Found at i:535431 original size:34 final size:34
Alignment explanation
Indices: 535383--535448 Score: 105
Period size: 34 Copynumber: 1.9 Consensus size: 34
535373 AAGAGTTGCA
* * *
535383 GTCATCTCTTTATATTCCGTTCCATTTCCGACTG
1 GTCATCTCTCTATATTACGTTCCATTCCCGACTG
535417 GTCATCTCTCTATATTACGTTCCATTCCCGAC
1 GTCATCTCTCTATATTACGTTCCATTCCCGAC
535449 AACTGTTCTT
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
34 29 1.00
ACGTcount: A:0.17, C:0.32, G:0.11, T:0.41
Consensus pattern (34 bp):
GTCATCTCTCTATATTACGTTCCATTCCCGACTG
Found at i:546639 original size:94 final size:94
Alignment explanation
Indices: 546534--546723 Score: 281
Period size: 94 Copynumber: 2.0 Consensus size: 94
546524 AAATCAATTT
** * * *
546534 AAAAACAAGGAAATTGACCGTCCAATTCCAAATTATGAAGTGAACAAAGGCCAAAGAGATGGAAA
1 AAAAACAAGGAAAAAGACCCTCCAATTCCAAATTATCAAGTGAACAAAAGCCAAAGAGATGGAAA
*
546599 CAGATCTGTAAAAAATTGGAAAAAAAATA
66 CAGAGCTGTAAAAAATTGGAAAAAAAATA
* * * *
546628 AAAAACAAGGAAAAAGACCCTCCAATTCCAAATTCTCAATTGAAGAAAAGCGAAAGAGATGGAAA
1 AAAAACAAGGAAAAAGACCCTCCAATTCCAAATTATCAAGTGAACAAAAGCCAAAGAGATGGAAA
*
546693 CAGAGCTGTAAAAAATTGGCAAAAAAATA
66 CAGAGCTGTAAAAAATTGGAAAAAAAATA
546722 AA
1 AA
546724 GAAAAAAATT
Statistics
Matches: 85, Mismatches: 11, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
94 85 1.00
ACGTcount: A:0.53, C:0.14, G:0.17, T:0.16
Consensus pattern (94 bp):
AAAAACAAGGAAAAAGACCCTCCAATTCCAAATTATCAAGTGAACAAAAGCCAAAGAGATGGAAA
CAGAGCTGTAAAAAATTGGAAAAAAAATA
Found at i:548794 original size:127 final size:127
Alignment explanation
Indices: 548564--548795 Score: 385
Period size: 127 Copynumber: 1.8 Consensus size: 127
548554 TCTACATAGA
* *
548564 GAAAAGAGTTGCATATGCTGAGATTCGACCTTGCTACTTCTTAAAAGAGAATGCTATGAAACTAT
1 GAAAAGAGTTACATATACTGAGATTCGACCTTGCTACTTCTTAAAAGAGAATGCTATGAAACTAT
** *
548629 CAAGCTTGTTTTTCTGGACCTTTCATTTTCTTATAGTACTCGTACATGAAACTTTGACTCTC
66 CAAGCTTGTTTTTCCAGACCTTTCATTTTCTTAAAGTACTCGTACATGAAACTTTGACTCTC
* *
548691 GAAAAGGGTTACATATATTGAGATTCGACCTTGCTACTTCTTAAAAGAGAATGCTATGAAACTAT
1 GAAAAGAGTTACATATACTGAGATTCGACCTTGCTACTTCTTAAAAGAGAATGCTATGAAACTAT
548756 CAAGCTTGTTTTTCCAGACCATTT-ATTTTCTTAAAGTACT
66 CAAGCTTGTTTTTCCAGACC-TTTCATTTTCTTAAAGTACT
548796 TATATATGAA
Statistics
Matches: 97, Mismatches: 7, Indels: 2
0.92 0.07 0.02
Matches are distributed among these distances:
127 94 0.97
128 3 0.03
ACGTcount: A:0.30, C:0.18, G:0.16, T:0.36
Consensus pattern (127 bp):
GAAAAGAGTTACATATACTGAGATTCGACCTTGCTACTTCTTAAAAGAGAATGCTATGAAACTAT
CAAGCTTGTTTTTCCAGACCTTTCATTTTCTTAAAGTACTCGTACATGAAACTTTGACTCTC
Found at i:551556 original size:11 final size:12
Alignment explanation
Indices: 551529--551555 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
551519 TAATTGAATA
551529 AAAATATTTTTT
1 AAAATATTTTTT
551541 AAAATATTTTTT
1 AAAATATTTTTT
551553 AAA
1 AAA
551556 TTCAACAAGA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (12 bp):
AAAATATTTTTT
Found at i:554124 original size:21 final size:21
Alignment explanation
Indices: 554098--554137 Score: 64
Period size: 21 Copynumber: 1.9 Consensus size: 21
554088 AGACCCAGAA
554098 GGAGACCTTGAAT-ATCTACCT
1 GGAGACCTTG-ATGATCTACCT
554119 GGAGACCTTGATGATCTAC
1 GGAGACCTTGATGATCTAC
554138 ACAGAGATCG
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
20 2 0.11
21 16 0.89
ACGTcount: A:0.28, C:0.23, G:0.23, T:0.28
Consensus pattern (21 bp):
GGAGACCTTGATGATCTACCT
Found at i:569175 original size:6 final size:6
Alignment explanation
Indices: 569166--569266 Score: 112
Period size: 6 Copynumber: 15.8 Consensus size: 6
569156 TCCCTCTCTT
* * * *
569166 TTTCCC TTTCCC TTTCTC TTTCTC TTTCCCTC TTCTCCC TTTCTC TTTCTC
1 TTTCCC TTTCCC TTTCCC TTTCCC TTT-CC-C TT-TCCC TTTCCC TTTCCC
569217 TTTCCC TTTCCC TTTCCC TTTCCC TTTCCCGC TTTTCCC TTTCCC TTTCC
1 TTTCCC TTTCCC TTTCCC TTTCCC TTT-CC-C -TTTCCC TTTCCC TTTCC
569267 TTCTCCCTAG
Statistics
Matches: 85, Mismatches: 4, Indels: 12
0.84 0.04 0.12
Matches are distributed among these distances:
6 66 0.78
7 7 0.08
8 8 0.09
9 4 0.05
ACGTcount: A:0.00, C:0.46, G:0.01, T:0.53
Consensus pattern (6 bp):
TTTCCC
Found at i:569209 original size:27 final size:26
Alignment explanation
Indices: 569148--569274 Score: 129
Period size: 27 Copynumber: 5.0 Consensus size: 26
569138 CTCGCCTTCT
* * *
569148 TTTCCCTCTCCCTCTCT-TTTTCC-C
1 TTTCCCTTTCCCTTTCTCTTTCCCTC
*
569172 TTTCCCTTTCTCTTTCTCTTTCCCTC
1 TTTCCCTTTCCCTTTCTCTTTCCCTC
*
569198 TTCTCCCTTTCTCTTTCTCTTT-CC-C
1 TT-TCCCTTTCCCTTTCTCTTTCCCTC
* *
569223 TTTCCCTTTCCCTTTCCCTTTCCCGC
1 TTTCCCTTTCCCTTTCTCTTTCCCTC
569249 TTTTCCCTTTCCCTTTC-CTTCTCCCT
1 -TTTCCCTTTCCCTTTCTCTT-TCCCT
569275 AGCTCTTTCC
Statistics
Matches: 89, Mismatches: 7, Indels: 11
0.83 0.07 0.10
Matches are distributed among these distances:
24 31 0.35
25 10 0.11
26 9 0.10
27 39 0.44
ACGTcount: A:0.00, C:0.46, G:0.01, T:0.53
Consensus pattern (26 bp):
TTTCCCTTTCCCTTTCTCTTTCCCTC
Found at i:569220 original size:45 final size:45
Alignment explanation
Indices: 569154--569288 Score: 150
Period size: 45 Copynumber: 3.0 Consensus size: 45
569144 TTCTTTTCCC
* * *
569154 TCTCCCTCTCTTTTTCCCTTTCCCTTTCTCTTTCTCTTTCCCTCT
1 TCTCCCTTTCTCTTTCCCTTTCCCTTTCCCTTTCTCTTTCCCTCT
* *
569199 TCTCCCTTTCTCTTTCTCTTTCCCTTTCCCTTTCCCTTTCCCT-T
1 TCTCCCTTTCTCTTTCCCTTTCCCTTTCCCTTTCTCTTTCCCTCT
* **
569243 TC-CCGCTTTTCCCTTTCCCTTT-CCTTCTCCCTAGCTCTTTCCCTCT
1 TCTCC-C-TTTCTCTTTCCCTTTCCCTT-TCCCTTTCTCTTTCCCTCT
569289 CCTTTTCCTT
Statistics
Matches: 76, Mismatches: 10, Indels: 7
0.82 0.11 0.08
Matches are distributed among these distances:
43 2 0.03
44 8 0.11
45 65 0.86
46 1 0.01
ACGTcount: A:0.01, C:0.46, G:0.01, T:0.52
Consensus pattern (45 bp):
TCTCCCTTTCTCTTTCCCTTTCCCTTTCCCTTTCTCTTTCCCTCT
Found at i:569265 original size:51 final size:51
Alignment explanation
Indices: 569146--569274 Score: 170
Period size: 51 Copynumber: 2.5 Consensus size: 51
569136 CCCTCGCCTT
* * * * * *
569146 CTTTTCCCTCTCCCTCTCTTTTTCCCTTTCCCTTTCTCTTTCTCTTTCCCT
1 CTTTTCCCTTTCCCTTTCTCTTTCCCTTTCCCTTTCCCTTTCCCTTTCCCG
* *
569197 CTTCTCCCTTTCTCTTTCTCTTTCCCTTTCCCTTTCCCTTTCCCTTTCCCG
1 CTTTTCCCTTTCCCTTTCTCTTTCCCTTTCCCTTTCCCTTTCCCTTTCCCG
569248 CTTTTCCCTTTCCCTTTC-CTTCTCCCT
1 CTTTTCCCTTTCCCTTTCTCTT-TCCCT
569275 AGCTCTTTCC
Statistics
Matches: 67, Mismatches: 10, Indels: 2
0.85 0.13 0.03
Matches are distributed among these distances:
50 3 0.04
51 64 0.96
ACGTcount: A:0.00, C:0.47, G:0.01, T:0.53
Consensus pattern (51 bp):
CTTTTCCCTTTCCCTTTCTCTTTCCCTTTCCCTTTCCCTTTCCCTTTCCCG
Found at i:569283 original size:39 final size:39
Alignment explanation
Indices: 569211--569285 Score: 98
Period size: 39 Copynumber: 1.9 Consensus size: 39
569201 TCCCTTTCTC
* **
569211 TTTCTCTTTCCCTTTCCCTTTCCCTTTCCCTTTCCCGCT
1 TTTCCCTTTCCCTTTCCCTTTCCCTAGCCCTTTCCCGCT
*
569250 TTTCCCTTTCCCTTT-CCTTCTCCCTAGCTCTTTCCC
1 TTTCCCTTTCCCTTTCCCTT-TCCCTAGCCCTTTCCC
569286 TCTCCTTTTC
Statistics
Matches: 31, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
38 4 0.13
39 27 0.87
ACGTcount: A:0.01, C:0.47, G:0.03, T:0.49
Consensus pattern (39 bp):
TTTCCCTTTCCCTTTCCCTTTCCCTAGCCCTTTCCCGCT
Found at i:569283 original size:51 final size:51
Alignment explanation
Indices: 569150--569296 Score: 143
Period size: 51 Copynumber: 2.9 Consensus size: 51
569140 CGCCTTCTTT
* * * ** * * *
569150 TCCCTCTCCCTCTCTTTTTCCCTTTCCCTTTCTCTTTCTCTTTCCCTCTTC
1 TCCCTTTCCCTTTCTCTTTCCCTAGCCCTTTCCCTTTCCCTTTCCCGCTTC
* ** *
569201 TCCCTTTCTCTTTCTCTTTCCCTTTCCCTTTCCCTTTCCCTTTCCCGCTTT
1 TCCCTTTCCCTTTCTCTTTCCCTAGCCCTTTCCCTTTCCCTTTCCCGCTTC
* * *
569252 TCCCTTTCCCTTTC-CTTCTCCCTAGCTCTTTCCCTCTCCTTTTCC
1 TCCCTTTCCCTTTCTCTT-TCCCTAGCCCTTTCCCTTTCCCTTTCC
569297 TTCTCTCGTT
Statistics
Matches: 81, Mismatches: 14, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
50 3 0.04
51 78 0.96
ACGTcount: A:0.01, C:0.47, G:0.01, T:0.51
Consensus pattern (51 bp):
TCCCTTTCCCTTTCTCTTTCCCTAGCCCTTTCCCTTTCCCTTTCCCGCTTC
Found at i:569635 original size:17 final size:17
Alignment explanation
Indices: 569601--569635 Score: 54
Period size: 17 Copynumber: 2.1 Consensus size: 17
569591 AACTAAATTA
569601 AAAAATGAAATTAAAAC
1 AAAAATGAAATTAAAAC
569618 AAAAA-GAAATTAAGAAC
1 AAAAATGAAATTAA-AAC
569635 A
1 A
569636 GTGGAACTGG
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 8 0.47
17 9 0.53
ACGTcount: A:0.71, C:0.06, G:0.09, T:0.14
Consensus pattern (17 bp):
AAAAATGAAATTAAAAC
Found at i:570398 original size:56 final size:54
Alignment explanation
Indices: 570330--570440 Score: 134
Period size: 55 Copynumber: 2.0 Consensus size: 54
570320 ATAAATTTAG
*
570330 GTACCAAATTGAAACTAAAAAAGACTTAGATACCAAATTTAAAAAAA-TCAAGTTCA
1 GTACCAAATTG-AACCAAAAAA-ACTTAGATACCAAA-TTAAAAAAAGTCAAGTTCA
* * * *
570386 GTACCAATTTGAACCCAAAAAATTTAGATATCAAATTAAAAAAATGTCAAGTTCA
1 GTACCAAATTGAACCAAAAAAACTTAGATACCAAATTAAAAAAA-GTCAAGTTCA
570441 AATACTAAAT
Statistics
Matches: 48, Mismatches: 5, Indels: 5
0.83 0.09 0.09
Matches are distributed among these distances:
53 9 0.19
54 12 0.25
55 17 0.35
56 10 0.21
ACGTcount: A:0.51, C:0.14, G:0.09, T:0.25
Consensus pattern (54 bp):
GTACCAAATTGAACCAAAAAAACTTAGATACCAAATTAAAAAAAGTCAAGTTCA
Found at i:570529 original size:20 final size:20
Alignment explanation
Indices: 570504--570548 Score: 65
Period size: 20 Copynumber: 2.2 Consensus size: 20
570494 TCCTATAGTT
570504 ATTTTATATAA-AATTATATA
1 ATTTTATATAATAATTAT-TA
*
570524 ATTTTATATAATCATTATTA
1 ATTTTATATAATAATTATTA
570544 ATTTT
1 ATTTT
570549 TTTTGGTAGA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
20 18 0.78
21 5 0.22
ACGTcount: A:0.42, C:0.02, G:0.00, T:0.56
Consensus pattern (20 bp):
ATTTTATATAATAATTATTA
Found at i:573645 original size:2 final size:2
Alignment explanation
Indices: 573638--573664 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
573628 TGTATGTCTC
573638 TG TG TG TG TG TG TG TG TG TG TG TG TG T
1 TG TG TG TG TG TG TG TG TG TG TG TG TG T
573665 ACAAATGCAT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.00, C:0.00, G:0.48, T:0.52
Consensus pattern (2 bp):
TG
Done.