Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NTFQ01015296.1 Kokia drynarioides strain JFW-HI SEQ_130341, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 852674
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 334 characters in sequence are not A, C, G, or T
File 3 of 3
Found at i:579698 original size:21 final size:23
Alignment explanation
Indices: 579674--579717 Score: 65
Period size: 22 Copynumber: 2.0 Consensus size: 23
579664 ACATAACAAT
579674 TATAA-TTTATAAATTT-AAATA
1 TATAATTTTATAAATTTGAAATA
*
579695 TATAATTTTATATATTTGAAATA
1 TATAATTTTATAAATTTGAAATA
579718 AATTTTAATA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
21 5 0.25
22 10 0.50
23 5 0.25
ACGTcount: A:0.48, C:0.00, G:0.02, T:0.50
Consensus pattern (23 bp):
TATAATTTTATAAATTTGAAATA
Found at i:590027 original size:14 final size:14
Alignment explanation
Indices: 590008--590034 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
589998 TGTTGGCTGG
590008 TCCAACTTTTACAA
1 TCCAACTTTTACAA
590022 TCCAACTTTTACA
1 TCCAACTTTTACA
590035 TTGGCAGGAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.33, C:0.30, G:0.00, T:0.37
Consensus pattern (14 bp):
TCCAACTTTTACAA
Found at i:595521 original size:71 final size:71
Alignment explanation
Indices: 595416--595561 Score: 292
Period size: 71 Copynumber: 2.1 Consensus size: 71
595406 AAAATATATG
595416 ATTTAATAATAGTTTTTTTAATTTAATTATAATATATGAATATTAATATAAAATTAAGTTAATAT
1 ATTTAATAATAGTTTTTTTAATTTAATTATAATATATGAATATTAATATAAAATTAAGTTAATAT
595481 TTTATT
66 TTTATT
595487 ATTTAATAATAGTTTTTTTAATTTAATTATAATATATGAATATTAATATAAAATTAAGTTAATAT
1 ATTTAATAATAGTTTTTTTAATTTAATTATAATATATGAATATTAATATAAAATTAAGTTAATAT
595552 TTTATT
66 TTTATT
595558 ATTT
1 ATTT
595562 TTAATCTTAA
Statistics
Matches: 75, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 75 1.00
ACGTcount: A:0.43, C:0.00, G:0.04, T:0.53
Consensus pattern (71 bp):
ATTTAATAATAGTTTTTTTAATTTAATTATAATATATGAATATTAATATAAAATTAAGTTAATAT
TTTATT
Found at i:607390 original size:10 final size:10
Alignment explanation
Indices: 607375--607408 Score: 50
Period size: 10 Copynumber: 3.2 Consensus size: 10
607365 TTAAATATAC
607375 TTATTTTTTT
1 TTATTTTTTT
607385 TTATTTTTTT
1 TTATTTTTTT
607395 TTCATTTTTATT
1 TT-ATTTTT-TT
607407 TT
1 TT
607409 TTATCAAACA
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
10 12 0.55
11 6 0.27
12 4 0.18
ACGTcount: A:0.12, C:0.03, G:0.00, T:0.85
Consensus pattern (10 bp):
TTATTTTTTT
Found at i:611513 original size:23 final size:23
Alignment explanation
Indices: 611457--611514 Score: 107
Period size: 23 Copynumber: 2.5 Consensus size: 23
611447 AGAACTGGAA
*
611457 TTTTGAGAGAAAATAAGAACAGG
1 TTTTGAGAGAGAATAAGAACAGG
611480 TTTTGAGAGAGAATAAGAACAGG
1 TTTTGAGAGAGAATAAGAACAGG
611503 TTTTGAGAGAGA
1 TTTTGAGAGAGA
611515 GCAAAAGTGT
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
23 34 1.00
ACGTcount: A:0.43, C:0.03, G:0.29, T:0.24
Consensus pattern (23 bp):
TTTTGAGAGAGAATAAGAACAGG
Found at i:611636 original size:23 final size:23
Alignment explanation
Indices: 611608--611663 Score: 89
Period size: 23 Copynumber: 2.5 Consensus size: 23
611598 GTAAATTAAA
611608 ACAAACATAATGGC-AGAAGAGTT
1 ACAAACATAATGGCAAG-AGAGTT
611631 ACAAACATAATGGCAAGAGAGTT
1 ACAAACATAATGGCAAGAGAGTT
611654 ACAAA-ATAAT
1 ACAAACATAAT
611664 ATTAATTAGT
Statistics
Matches: 32, Mismatches: 0, Indels: 3
0.91 0.00 0.09
Matches are distributed among these distances:
22 5 0.16
23 25 0.78
24 2 0.06
ACGTcount: A:0.52, C:0.12, G:0.18, T:0.18
Consensus pattern (23 bp):
ACAAACATAATGGCAAGAGAGTT
Found at i:613831 original size:20 final size:20
Alignment explanation
Indices: 613793--613845 Score: 61
Period size: 20 Copynumber: 2.6 Consensus size: 20
613783 GTCTTCAAGG
* * * *
613793 TACCGGTAGAACTGTAGTTG
1 TACCGATAGAAGTGGAGTTC
*
613813 TATCGATAGAAGTGGAGTTC
1 TACCGATAGAAGTGGAGTTC
613833 TACCGATAGAAGT
1 TACCGATAGAAGT
613846 CCCAAGCCAA
Statistics
Matches: 27, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
20 27 1.00
ACGTcount: A:0.30, C:0.13, G:0.28, T:0.28
Consensus pattern (20 bp):
TACCGATAGAAGTGGAGTTC
Found at i:635539 original size:9 final size:9
Alignment explanation
Indices: 635523--635561 Score: 53
Period size: 9 Copynumber: 4.3 Consensus size: 9
635513 ATAGTGAGTA
635523 AAAT-AAAT
1 AAATAAAAT
*
635531 AAATGAAAT
1 AAATAAAAT
635540 AAATAAAAT
1 AAATAAAAT
635549 AAAATAAAAT
1 -AAATAAAAT
635559 AAA
1 AAA
635562 AAGAAAACCT
Statistics
Matches: 28, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
8 4 0.14
9 15 0.54
10 9 0.32
ACGTcount: A:0.77, C:0.00, G:0.03, T:0.21
Consensus pattern (9 bp):
AAATAAAAT
Found at i:635562 original size:5 final size:5
Alignment explanation
Indices: 635521--635562 Score: 54
Period size: 5 Copynumber: 9.0 Consensus size: 5
635511 AAATAGTGAG
*
635521 TAAAA T-AAA T-AAA TGAAA T-AAA TAAAA TAAAA TAAAA TAAAA
1 TAAAA TAAAA TAAAA TAAAA TAAAA TAAAA TAAAA TAAAA TAAAA
635563 AGAAAACCTA
Statistics
Matches: 35, Mismatches: 0, Indels: 4
0.90 0.00 0.10
Matches are distributed among these distances:
4 12 0.34
5 23 0.66
ACGTcount: A:0.76, C:0.00, G:0.02, T:0.21
Consensus pattern (5 bp):
TAAAA
Found at i:642335 original size:45 final size:45
Alignment explanation
Indices: 642251--642348 Score: 119
Period size: 45 Copynumber: 2.2 Consensus size: 45
642241 ATAATGAATA
*
642251 GAAATGGAGAAATGAAAAACATTTAGAAATTGTTATGGTTTTCTCC
1 GAAATGGAGAAATGAAAAACATTTAGAAATTGATATGGTTTTCT-C
* * *
642297 GAAATGGAGAAATG-AAATCATTTGGAAA-TGAATGTGGTTTTCTC
1 GAAATGGAGAAATGAAAAACATTTAGAAATTG-ATATGGTTTTCTC
*
642341 AAAATGGA
1 GAAATGGA
642349 AATGGAAATA
Statistics
Matches: 46, Mismatches: 5, Indels: 4
0.84 0.09 0.07
Matches are distributed among these distances:
44 10 0.22
45 22 0.48
46 14 0.30
ACGTcount: A:0.40, C:0.07, G:0.22, T:0.31
Consensus pattern (45 bp):
GAAATGGAGAAATGAAAAACATTTAGAAATTGATATGGTTTTCTC
Found at i:642364 original size:18 final size:19
Alignment explanation
Indices: 642341--642376 Score: 56
Period size: 18 Copynumber: 1.9 Consensus size: 19
642331 TGGTTTTCTC
*
642341 AAAATGGAAATG-GAAATA
1 AAAATGAAAATGAGAAATA
642359 AAAATGAAAATGAGAAAT
1 AAAATGAAAATGAGAAAT
642377 GGTTCATTTG
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 11 0.69
19 5 0.31
ACGTcount: A:0.64, C:0.00, G:0.19, T:0.17
Consensus pattern (19 bp):
AAAATGAAAATGAGAAATA
Found at i:643131 original size:52 final size:51
Alignment explanation
Indices: 643030--643176 Score: 208
Period size: 52 Copynumber: 2.9 Consensus size: 51
643020 AACATAAATA
* * *
643030 ATATTTATATAAAACATAAGATCTG-AACAAAACAATATAAATAAATATTT
1 ATATTTATGTAAAACATCAGATCTGAAACAAAACAATTTAAATAAATATTT
* *
643080 ATATTTATGTAAAACATCATATCTGGAAAAAAAACAATTTAAATAAATATTT
1 ATATTTATGTAAAACATCAGATCT-GAAACAAAACAATTTAAATAAATATTT
* *
643132 ATATTTACGTAAAACACCAGATCT-AAACAAAACAATTTAAATAAA
1 ATATTTATGTAAAACATCAGATCTGAAACAAAACAATTTAAATAAA
643177 CAAGATCTGA
Statistics
Matches: 86, Mismatches: 9, Indels: 4
0.87 0.09 0.04
Matches are distributed among these distances:
50 41 0.48
51 1 0.01
52 44 0.51
ACGTcount: A:0.54, C:0.10, G:0.05, T:0.31
Consensus pattern (51 bp):
ATATTTATGTAAAACATCAGATCTGAAACAAAACAATTTAAATAAATATTT
Found at i:643594 original size:9 final size:9
Alignment explanation
Indices: 643580--643623 Score: 52
Period size: 9 Copynumber: 4.8 Consensus size: 9
643570 TAAAGGAGTC
643580 ATTAAATCA
1 ATTAAATCA
643589 ATTAAATCAA
1 ATTAAATC-A
* * *
643599 ATCAATTTA
1 ATTAAATCA
643608 ATTAAATCA
1 ATTAAATCA
643617 ATTAAAT
1 ATTAAAT
643624 ATTTGTCCTT
Statistics
Matches: 28, Mismatches: 6, Indels: 2
0.78 0.17 0.06
Matches are distributed among these distances:
9 22 0.79
10 6 0.21
ACGTcount: A:0.55, C:0.09, G:0.00, T:0.36
Consensus pattern (9 bp):
ATTAAATCA
Found at i:643602 original size:14 final size:14
Alignment explanation
Indices: 643583--643623 Score: 64
Period size: 14 Copynumber: 2.9 Consensus size: 14
643573 AGGAGTCATT
643583 AAATCAATTAAATC
1 AAATCAATTAAATC
* *
643597 AAATCAATTTAATT
1 AAATCAATTAAATC
643611 AAATCAATTAAAT
1 AAATCAATTAAAT
643624 ATTTGTCCTT
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
14 24 1.00
ACGTcount: A:0.56, C:0.10, G:0.00, T:0.34
Consensus pattern (14 bp):
AAATCAATTAAATC
Found at i:651041 original size:15 final size:16
Alignment explanation
Indices: 651018--651056 Score: 53
Period size: 15 Copynumber: 2.5 Consensus size: 16
651008 TCTAAAGTAT
*
651018 CTAAATTAAATTAA-A
1 CTAAATTAAACTAAGA
*
651033 CTAAGTTAAACTAAGA
1 CTAAATTAAACTAAGA
651049 CTAAATTA
1 CTAAATTA
651057 TATTCCTATG
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
15 12 0.60
16 8 0.40
ACGTcount: A:0.54, C:0.10, G:0.05, T:0.31
Consensus pattern (16 bp):
CTAAATTAAACTAAGA
Found at i:652575 original size:144 final size:144
Alignment explanation
Indices: 652390--652677 Score: 540
Period size: 144 Copynumber: 2.0 Consensus size: 144
652380 TTTATTTTTA
* *
652390 ATCCAATTTAATTTGAATTAAAAATATAATTATAAAGCATAATTTATCTTCATATTGGTGTGACC
1 ATCCAATTTAATTTGAACTAAAAATATAATTATAAAGCATAATTTAGCTTCATATTGGTGTGACC
652455 CTTGACTTGAAAAATATTCTTCTTAGCTCTTTGTTAACTCAGTGTAAAAATTCCCTCAATGGTGT
66 CTTGACTTGAAAAATATTCTTCTTAGCTCTTTGTTAACTCAGTGTAAAAATTCCCTCAATGGTGT
652520 AAGATGTCAATAGT
131 AAGATGTCAATAGT
*
652534 ATCCAATTTAATTTGAACTAAAAATATAATTATAAAGCATAATTTAGCTTCTTATTGGTGTGACC
1 ATCCAATTTAATTTGAACTAAAAATATAATTATAAAGCATAATTTAGCTTCATATTGGTGTGACC
652599 CTTGACTTGAAAAATATTCTTCTTAGCTCTTTGTTAACTCAGTGTAAAAATTCCCTCAATGGTGT
66 CTTGACTTGAAAAATATTCTTCTTAGCTCTTTGTTAACTCAGTGTAAAAATTCCCTCAATGGTGT
*
652664 AAGCTGTCAATAGT
131 AAGATGTCAATAGT
652678 GTCTGTCGGG
Statistics
Matches: 140, Mismatches: 4, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
144 140 1.00
ACGTcount: A:0.34, C:0.15, G:0.13, T:0.39
Consensus pattern (144 bp):
ATCCAATTTAATTTGAACTAAAAATATAATTATAAAGCATAATTTAGCTTCATATTGGTGTGACC
CTTGACTTGAAAAATATTCTTCTTAGCTCTTTGTTAACTCAGTGTAAAAATTCCCTCAATGGTGT
AAGATGTCAATAGT
Found at i:659550 original size:68 final size:68
Alignment explanation
Indices: 659441--659576 Score: 272
Period size: 68 Copynumber: 2.0 Consensus size: 68
659431 TTTTTGCCAA
659441 AAGGAGTAAATGTTATTTTGGATCAAGCCAAGTGAAAATTTTGAGAATGTGATCCATAATGGTTC
1 AAGGAGTAAATGTTATTTTGGATCAAGCCAAGTGAAAATTTTGAGAATGTGATCCATAATGGTTC
659506 TAT
66 TAT
659509 AAGGAGTAAATGTTATTTTGGATCAAGCCAAGTGAAAATTTTGAGAATGTGATCCATAATGGTTC
1 AAGGAGTAAATGTTATTTTGGATCAAGCCAAGTGAAAATTTTGAGAATGTGATCCATAATGGTTC
659574 TAT
66 TAT
659577 TTCTATGGAT
Statistics
Matches: 68, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
68 68 1.00
ACGTcount: A:0.35, C:0.09, G:0.22, T:0.34
Consensus pattern (68 bp):
AAGGAGTAAATGTTATTTTGGATCAAGCCAAGTGAAAATTTTGAGAATGTGATCCATAATGGTTC
TAT
Found at i:662479 original size:63 final size:65
Alignment explanation
Indices: 662295--662479 Score: 238
Period size: 64 Copynumber: 2.9 Consensus size: 65
662285 GTGTTTGGGC
* * * *
662295 CGTGTGCCATATAAACAACAAACAATGAGTTACACAGTCGA-GGA-ACACGAGCATGTGTCTAGG
1 CGTGTGCCCTATAAACAATAAACAGTGAGTTACACAGTCTATGGACACA-GAGCATGTGTCTAGG
662358 T
65 T
* *
662359 CATGTGCCCTATAAACAATAAATAGTGAGTTACAC-GATCTATGGACA-AGAGCATGTGTCTAGG
1 CGTGTGCCCTATAAACAATAAACAGTGAGTTACACAG-TCTATGGACACAGAGCATGTGTCTAGG
662422 T
65 T
* *
662423 CGTGT-CCCTATAAACAATAAACAGTGAGTTACACAGTCTCTGGACACAG-GCGTGTGT
1 CGTGTGCCCTATAAACAATAAACAGTGAGTTACACAGTCTATGGACACAGAGCATGTGT
662480 GCTAAGTTGT
Statistics
Matches: 106, Mismatches: 10, Indels: 11
0.83 0.08 0.09
Matches are distributed among these distances:
63 45 0.42
64 56 0.53
65 4 0.04
66 1 0.01
ACGTcount: A:0.34, C:0.20, G:0.23, T:0.24
Consensus pattern (65 bp):
CGTGTGCCCTATAAACAATAAACAGTGAGTTACACAGTCTATGGACACAGAGCATGTGTCTAGGT
Found at i:662769 original size:39 final size:39
Alignment explanation
Indices: 662726--662858 Score: 121
Period size: 39 Copynumber: 3.4 Consensus size: 39
662716 TGAACTTATG
*
662726 GTGACAATGTAAACACCGTAATACTGTATCGAACAGGCA
1 GTGACACTGTAAACACCGTAATACTGTATCGAACAGGCA
* * *
662765 GTGACACTGTAAACA-C-TACA-A-TTTAATACTGAACTGACA
1 GTGACACTGTAAACACCGTA-ATACTGT-AT-C-GAACAGGCA
* * *
662804 GTGACACTATAAACACCGTAATACTGTATCGAACAAGTA
1 GTGACACTGTAAACACCGTAATACTGTATCGAACAGGCA
* *
662843 GTGACATTGTCAACAC
1 GTGACACTGTAAACAC
662859 TGCAATTCAA
Statistics
Matches: 73, Mismatches: 13, Indels: 16
0.72 0.13 0.16
Matches are distributed among these distances:
36 2 0.03
37 5 0.07
38 3 0.04
39 53 0.73
40 3 0.04
41 5 0.07
42 2 0.03
ACGTcount: A:0.39, C:0.21, G:0.17, T:0.23
Consensus pattern (39 bp):
GTGACACTGTAAACACCGTAATACTGTATCGAACAGGCA
Found at i:662846 original size:78 final size:78
Alignment explanation
Indices: 662726--662983 Score: 306
Period size: 78 Copynumber: 3.3 Consensus size: 78
662716 TGAACTTATG
* * * * *
662726 GTGACAATGTAAACACCGTAATACTGTATCGAACAGGCAGTGACACTGTAAACACTACAATTTAA
1 GTGACACTATAAACACCGTAATACTGTATCGAACAAGCAGTGACATTGTAAACACTACAATTCAA
662791 TACTGAACTGACA
66 TACTGAACTGACA
* * *
662804 GTGACACTATAAACACCGTAATACTGTATCGAACAAGTAGTGACATTGTCAACACTGCAATTCAA
1 GTGACACTATAAACACCGTAATACTGTATCGAACAAGCAGTGACATTGTAAACACTACAATTCAA
* **
662869 TACTGAACTAATG
66 TACTGAACTGACA
* * * * * * *
662882 GTGACACTGTAAACACCTTAACACTGTATC-AATC-CGACAATGAAATTGTAAACACTACAATCC
1 GTGACACTATAAACACCGTAATACTGTATCGAA-CAAG-CAGTGACATTGTAAACACTACAATTC
662945 AA-ACTGAACTGACA
64 AATACTGAACTGACA
*
662959 GTGACACTATAAACACCATAATACT
1 GTGACACTATAAACACCGTAATACT
662984 ATACTGAGCT
Statistics
Matches: 151, Mismatches: 27, Indels: 5
0.83 0.15 0.03
Matches are distributed among these distances:
77 34 0.23
78 117 0.77
ACGTcount: A:0.40, C:0.22, G:0.14, T:0.24
Consensus pattern (78 bp):
GTGACACTATAAACACCGTAATACTGTATCGAACAAGCAGTGACATTGTAAACACTACAATTCAA
TACTGAACTGACA
Found at i:665988 original size:122 final size:121
Alignment explanation
Indices: 665771--666014 Score: 470
Period size: 122 Copynumber: 2.0 Consensus size: 121
665761 TTCTAGATCG
*
665771 AGGGTTCATTTGATCGAGCGTGTCTCCATGGGGAGCACCGGTGCTATTTGTTAAGAAAAAGGATG
1 AGGGTTCATTTGATCGAGCGTGTCTCCATGGGGAGCACCGGTGCTATTTGTTAAAAAAAAGGATG
665836 GAAAAATGAGAATATGTATTGACTATCGTCAGTTAAACAAGTTGATCATTAAGAAC
66 GAAAAATGAGAATATGTATTGACTATCGTCAGTTAAACAAGTTGATCATTAAGAAC
665892 NAGGGTTCATTTGATCGAGCGTGTCTCCATGGGGAGCACCGGTGCTATTTGTTAAAAAAAAGGAT
1 -AGGGTTCATTTGATCGAGCGTGTCTCCATGGGGAGCACCGGTGCTATTTGTTAAAAAAAAGGAT
665957 GGAAAAATGAGAATATGTATTGACTATCGTCAGTTAAACAAGTTGATCATTAAGAAC
65 GGAAAAATGAGAATATGTATTGACTATCGTCAGTTAAACAAGTTGATCATTAAGAAC
666014 A
1 A
666015 AGTATCCTCT
Statistics
Matches: 121, Mismatches: 1, Indels: 1
0.98 0.01 0.01
Matches are distributed among these distances:
121 1 0.01
122 120 0.99
ACGTcount: A:0.34, C:0.13, G:0.25, T:0.28
Consensus pattern (121 bp):
AGGGTTCATTTGATCGAGCGTGTCTCCATGGGGAGCACCGGTGCTATTTGTTAAAAAAAAGGATG
GAAAAATGAGAATATGTATTGACTATCGTCAGTTAAACAAGTTGATCATTAAGAAC
Found at i:669765 original size:77 final size:78
Alignment explanation
Indices: 669622--669812 Score: 244
Period size: 77 Copynumber: 2.5 Consensus size: 78
669612 CTTTGAAATA
* * * * * **
669622 CAATACTGAACTGACGGTGACACT-ATAAACACTGTATTACTATATCGAACAAGCAGTGACGCTG
1 CAATACTAAACTAACGGTGACACTGA-AAACACCGTAATACTATATCGAACAAGAAGTGACAATG
669686 TAAACACTGCAATT
65 TAAACACTGCAATT
* *
669700 TAATACT-AACTAACGGTGACACTGAAAACACCGTAATACTGTATCGAACAAGAAGTGACAATGT
1 CAATACTAAACTAACGGTGACACTGAAAACACCGTAATACTATATCGAACAAGAAGTGACAATGT
*
669764 AAACATTGCAATT
66 AAACACTGCAATT
* *
669777 CAATACTAAACTAACGGTGACAATGTAAA-ACCGTAA
1 CAATACTAAACTAACGGTGACACTGAAAACACCGTAA
669813 CTTGTATTGA
Statistics
Matches: 99, Mismatches: 12, Indels: 5
0.85 0.10 0.04
Matches are distributed among these distances:
77 73 0.74
78 26 0.26
ACGTcount: A:0.41, C:0.20, G:0.16, T:0.23
Consensus pattern (78 bp):
CAATACTAAACTAACGGTGACACTGAAAACACCGTAATACTATATCGAACAAGAAGTGACAATGT
AAACACTGCAATT
Found at i:672200 original size:60 final size:61
Alignment explanation
Indices: 672091--672223 Score: 143
Period size: 60 Copynumber: 2.3 Consensus size: 61
672081 AAAATACGAA
* * * *
672091 CAAAAAATAATTTTTTTGGGTGTCTACCATGCAATGGTCGTCACCCCCTTTTTCAGATACC
1 CAAAAAATAATTTTTTTGGGTGTCTACCAAGCAATAGTCGACACCCCCTTTATCAGATACC
* * * *
672152 CAAACAATAA-TTTTTTGGGTGTTTGCCAAGTC-ATAGTCGACACTCCCTTTATCAGATA--
1 CAAAAAATAATTTTTTTGGGTGTCTACCAAG-CAATAGTCGACACCCCCTTTATCAGATACC
672210 -AAAAAAT-ATTTTTT
1 CAAAAAATAATTTTTT
672224 AAGTGTATGT
Statistics
Matches: 61, Mismatches: 9, Indels: 8
0.78 0.12 0.10
Matches are distributed among these distances:
56 1 0.02
57 11 0.18
60 39 0.64
61 10 0.16
ACGTcount: A:0.30, C:0.20, G:0.14, T:0.36
Consensus pattern (61 bp):
CAAAAAATAATTTTTTTGGGTGTCTACCAAGCAATAGTCGACACCCCCTTTATCAGATACC
Found at i:672239 original size:56 final size:54
Alignment explanation
Indices: 672161--672351 Score: 208
Period size: 55 Copynumber: 3.5 Consensus size: 54
672151 CCAAACAATA
* * *
672161 ATTTTTTGGGTGTTTGCCAAGTCATAGTCGACACTCCCTTTATCAGATAAAAAAAT
1 ATTTTTT-GGTGTATGTCAAGTCAT-GTCGACACTCCCTTTATTAGATAAAAAAAT
*
672217 ATTTTTTAAGTGTATGTCAAGTCATGGTCGACA-TCCCCTTTATTAGAT-AAAAAAT
1 ATTTTTT-GGTGTATGTCAAGTCAT-GTCGACACT-CCCTTTATTAGATAAAAAAAT
* * * *
672272 ATTTTTGGGTGTCTG-CAAAGTCATGATCGAAACCCCCTTTATTAGATAAAAAAAT
1 ATTTTTTGGTGTATGTC-AAGTCATG-TCGACACTCCCTTTATTAGATAAAAAAAT
* *
672327 ATTTTTTGGTGTTTGTCAAGCCATG
1 ATTTTTTGGTGTATGTCAAGTCATG
672352 ACTGACACCC
Statistics
Matches: 115, Mismatches: 14, Indels: 13
0.81 0.10 0.09
Matches are distributed among these distances:
53 2 0.02
54 31 0.27
55 41 0.36
56 41 0.36
ACGTcount: A:0.30, C:0.16, G:0.17, T:0.37
Consensus pattern (54 bp):
ATTTTTTGGTGTATGTCAAGTCATGTCGACACTCCCTTTATTAGATAAAAAAAT
Found at i:672276 original size:55 final size:54
Alignment explanation
Indices: 672161--672351 Score: 215
Period size: 56 Copynumber: 3.5 Consensus size: 54
672151 CCAAACAATA
* * * *
672161 ATTTTTTGGGTGTTTGCCAAGTCATAGTCGACACTCCCTTTATCAGATAAAAAAAT
1 ATTTTTT-GGTGTATGTCAAGTCATGGTCGACAC-CCCTTTATTAGATAAAAAAAT
*
672217 ATTTTTTAAGTGTATGTCAAGTCATGGTCGACATCCCCTTTATTAGAT-AAAAAAT
1 ATTTTTT-GGTGTATGTCAAGTCATGGTCGACA-CCCCTTTATTAGATAAAAAAAT
* * * *
672272 ATTTTTGGGTGTCTG-CAAAGTCATGATCGAAACCCCCTTTATTAGATAAAAAAAT
1 ATTTTTTGGTGTATGTC-AAGTCATGGTCGACA-CCCCTTTATTAGATAAAAAAAT
* *
672327 ATTTTTTGGTGTTTGTCAAGCCATG
1 ATTTTTTGGTGTATGTCAAGTCATG
672352 ACTGACACCC
Statistics
Matches: 116, Mismatches: 15, Indels: 9
0.83 0.11 0.06
Matches are distributed among these distances:
53 1 0.01
54 33 0.28
55 40 0.34
56 41 0.35
57 1 0.01
ACGTcount: A:0.30, C:0.16, G:0.17, T:0.37
Consensus pattern (54 bp):
ATTTTTTGGTGTATGTCAAGTCATGGTCGACACCCCTTTATTAGATAAAAAAAT
Found at i:672294 original size:54 final size:53
Alignment explanation
Indices: 672163--672338 Score: 201
Period size: 54 Copynumber: 3.2 Consensus size: 53
672153 AAACAATAAT
* * *
672163 TTTTTGGGTGTTTGCCAAGTCATAGTCGACACTCCCTTTATCAGATAAAAAAATA
1 TTTTTGGGTGTATG-CAAGTCATGGTCGACAC-CCCTTTATTAGATAAAAAAATA
**
672218 TTTTTTAAGTGTATGTCAAGTCATGGTCGACATCCCCTTTATTAGAT-AAAAAATA
1 -TTTTTGGGTGTATG-CAAGTCATGGTCGACA-CCCCTTTATTAGATAAAAAAATA
* * *
672273 TTTTTGGGTGTCTGCAAAGTCATGATCGAAACCCCCTTTATTAGATAAAAAAATA
1 TTTTTGGGTGTATGC-AAGTCATGGTCGACA-CCCCTTTATTAGATAAAAAAATA
*
672328 TTTTTTGGTGT
1 TTTTTGGGTGT
672339 TTGTCAAGCC
Statistics
Matches: 104, Mismatches: 13, Indels: 7
0.84 0.10 0.06
Matches are distributed among these distances:
53 1 0.01
54 38 0.37
55 26 0.25
56 38 0.37
57 1 0.01
ACGTcount: A:0.31, C:0.15, G:0.16, T:0.38
Consensus pattern (53 bp):
TTTTTGGGTGTATGCAAGTCATGGTCGACACCCCTTTATTAGATAAAAAAATA
Found at i:673355 original size:30 final size:29
Alignment explanation
Indices: 673319--673379 Score: 104
Period size: 30 Copynumber: 2.1 Consensus size: 29
673309 GAAAAATAAT
673319 AATTACAAATTAAAATTAAAATATAAACGA
1 AATTACAAATTAAAATTAAAA-ATAAACGA
*
673349 AATTACAAATTAAATTTAAAAATAAACGA
1 AATTACAAATTAAAATTAAAAATAAACGA
673378 AA
1 AA
673380 AATAATCAAA
Statistics
Matches: 30, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
29 10 0.33
30 20 0.67
ACGTcount: A:0.64, C:0.07, G:0.03, T:0.26
Consensus pattern (29 bp):
AATTACAAATTAAAATTAAAAATAAACGA
Found at i:674045 original size:17 final size:17
Alignment explanation
Indices: 674023--674131 Score: 155
Period size: 17 Copynumber: 6.3 Consensus size: 17
674013 CATTTTTTTA
*
674023 AAATTTATTTTAAGTTT
1 AAATTTATTTTAAATTT
*
674040 AAATTTGTTTTTAAATTT
1 AAATTT-ATTTTAAATTT
*
674058 AAATTTATTTTAAGTTT
1 AAATTTATTTTAAATTT
674075 AAATTTATTTTAAATTT
1 AAATTTATTTTAAATTT
* *
674092 AAATTTAATTTAACTTT
1 AAATTTATTTTAAATTT
674109 AAATTTATTCTTAAATTT
1 AAATTTATT-TTAAATTT
674127 AAATT
1 AAATT
674132 AATAATATCC
Statistics
Matches: 81, Mismatches: 9, Indels: 3
0.87 0.10 0.03
Matches are distributed among these distances:
17 54 0.67
18 27 0.33
ACGTcount: A:0.39, C:0.02, G:0.03, T:0.57
Consensus pattern (17 bp):
AAATTTATTTTAAATTT
Found at i:674058 original size:6 final size:6
Alignment explanation
Indices: 674049--674131 Score: 84
Period size: 6 Copynumber: 14.3 Consensus size: 6
674039 TAAATTTGTT
* * *
674049 TTTAAA TTTAAA TTT-AT TTTAAG TTTAAA TTT-AT TTTAAA TTTAAA
1 TTTAAA TTTAAA TTTAAA TTTAAA TTTAAA TTTAAA TTTAAA TTTAAA
* *
674095 TTT-AA TTTAAC TTTAAA TTT-AT TCTTAAA TTTAAA TT
1 TTTAAA TTTAAA TTTAAA TTTAAA T-TTAAA TTTAAA TT
674132 AATAATATCC
Statistics
Matches: 63, Mismatches: 9, Indels: 10
0.77 0.11 0.12
Matches are distributed among these distances:
5 15 0.24
6 46 0.73
7 2 0.03
ACGTcount: A:0.40, C:0.02, G:0.01, T:0.57
Consensus pattern (6 bp):
TTTAAA
Found at i:674075 original size:11 final size:11
Alignment explanation
Indices: 674072--674127 Score: 60
Period size: 11 Copynumber: 4.9 Consensus size: 11
674062 TTATTTTAAG
674072 TTTAAATTTAT
1 TTTAAATTTAT
*
674083 TTTAAATTTAAA
1 TTTAAATTT-AT
*
674095 TTT-AATTTAAC
1 TTTAAATTT-AT
674106 TTTAAATTTAT
1 TTTAAATTTAT
674117 TCTTAAATTTA
1 T-TTAAATTTA
674128 AATTAATAAT
Statistics
Matches: 39, Mismatches: 3, Indels: 5
0.83 0.06 0.11
Matches are distributed among these distances:
11 21 0.54
12 18 0.46
ACGTcount: A:0.39, C:0.04, G:0.00, T:0.57
Consensus pattern (11 bp):
TTTAAATTTAT
Found at i:674134 original size:34 final size:34
Alignment explanation
Indices: 674023--674131 Score: 164
Period size: 35 Copynumber: 3.1 Consensus size: 34
674013 CATTTTTTTA
* *
674023 AAATTTATTTTAAGTTTAAATTTGTTTTTAAATTT
1 AAATTTAATTTAAGTTTAAATTT-ATTTTAAATTT
*
674058 AAATTTATTTTAAGTTTAAATTTATTTTAAATTT
1 AAATTTAATTTAAGTTTAAATTTATTTTAAATTT
*
674092 AAATTTAATTTAACTTTAAATTTATTCTTAAATTT
1 AAATTTAATTTAAGTTTAAATTTATT-TTAAATTT
674127 AAATT
1 AAATT
674132 AATAATATCC
Statistics
Matches: 70, Mismatches: 3, Indels: 2
0.93 0.04 0.03
Matches are distributed among these distances:
34 34 0.49
35 36 0.51
ACGTcount: A:0.39, C:0.02, G:0.03, T:0.57
Consensus pattern (34 bp):
AAATTTAATTTAAGTTTAAATTTATTTTAAATTT
Found at i:676003 original size:59 final size:57
Alignment explanation
Indices: 675938--676181 Score: 232
Period size: 59 Copynumber: 4.2 Consensus size: 57
675928 TAAAATTTTT
* *
675938 AAAAATTACATATTTTCCCCTAAACTTCCAAAAATTACAATTTTGCTCCTAAACTTCTC
1 AAAAATTACAT-TTTTCCCCTAAACTTCCAAAAATTACAATTTTACCCCTAAACTTC-C
* *
675997 AAAAATTACATTTTTGCCCCTAAACTTCCAAAAATTATAGTTTTACCCCTAAACTTCC
1 AAAAATTACATTTTT-CCCCTAAACTTCCAAAAATTACAATTTTACCCCTAAACTTCC
* * * * *
676055 AAAAATTACATTTTTCCCTTAAACTTCCAAAAA-T-CATGTTTTACCTC-AAATTTTCG
1 AAAAATTACATTTTTCCCCTAAACTTCCAAAAATTACA-ATTTTACCCCTAAA-CTTCC
* * * *
676111 TAAAATGACATTTTTACCCCTAAAACTTTCC-AAAATTAC-ATTTAACCCC-AAACTCTTC
1 AAAAATTACATTTTT-CCCCT-AAAC-TTCCAAAAATTACAATTTTACCCCTAAACT-TCC
*
676169 AAAACTT-CATTTT
1 AAAAATTACATTTT
676182 CGACCCTTTT
Statistics
Matches: 155, Mismatches: 21, Indels: 20
0.79 0.11 0.10
Matches are distributed among these distances:
55 4 0.03
56 26 0.17
57 28 0.18
58 43 0.28
59 53 0.34
60 1 0.01
ACGTcount: A:0.37, C:0.25, G:0.02, T:0.36
Consensus pattern (57 bp):
AAAAATTACATTTTTCCCCTAAACTTCCAAAAATTACAATTTTACCCCTAAACTTCC
Found at i:676152 original size:30 final size:29
Alignment explanation
Indices: 675874--676181 Score: 210
Period size: 29 Copynumber: 10.6 Consensus size: 29
675864 CCCTTACACT
* *
675874 TTTCCAAAATCACATTTTGACTCCC-AAAC
1 TTTCCAAAATTACATTTTTAC-CCCTAAAC
* ** *
675903 TTCTCCAAAATTACATTTTTTCCATTAAAAT
1 TT-TCCAAAATTACATTTTTACCCCT-AAAC
**
675934 TTTTAAAAATTACATATTTT-CCCCTAAAC
1 TTTCCAAAATTACAT-TTTTACCCCTAAAC
* * *
675963 -TTCCAAAAATTACAATTTTGCTCCTAAAC
1 TTTCC-AAAATTACATTTTTACCCCTAAAC
* *
675992 TTCTCAAAAATTACATTTTTGCCCCTAAAC
1 TT-TCCAAAATTACATTTTTACCCCTAAAC
* *
676022 -TTCCAAAAATTATAGTTTTACCCCTAAAC
1 TTTCC-AAAATTACATTTTTACCCCTAAAC
*
676051 -TTCCAAAAATTACATTTTT-CCCTTAAAC
1 TTTCC-AAAATTACATTTTTACCCCTAAAC
* * *
676079 -TTCCAAAAAT-CATGTTTTACCTC-AAAT
1 TTTCCAAAATTACAT-TTTTACCCCTAAAC
* *
676106 TTTCGTAAAATGACATTTTTACCCCTAAAAC
1 TTTC-CAAAATTACATTTTTACCCCT-AAAC
*
676137 TTTCCAAAATTACA-TTTAACCCC-AAAC
1 TTTCCAAAATTACATTTTTACCCCTAAAC
676164 TCTT-CAAAACTT-CATTTT
1 T-TTCCAAAA-TTACATTTT
676182 CGACCCTTTT
Statistics
Matches: 223, Mismatches: 37, Indels: 39
0.75 0.12 0.13
Matches are distributed among these distances:
26 3 0.01
27 24 0.11
28 32 0.14
29 82 0.37
30 64 0.29
31 18 0.08
ACGTcount: A:0.36, C:0.24, G:0.02, T:0.37
Consensus pattern (29 bp):
TTTCCAAAATTACATTTTTACCCCTAAAC
Found at i:687592 original size:39 final size:39
Alignment explanation
Indices: 687530--687709 Score: 132
Period size: 39 Copynumber: 4.6 Consensus size: 39
687520 CAGCAAGTTG
* *
687530 ATCTTTTACCCCGAGCCTAGGGCAAATTGCAACCATCCA
1 ATCTCTTACCCCGAGCCTGGGGCAAATTGCAACCATCCA
* * * *
687569 ATCTCTTACCCCGAGCCTGGGGCAGATTGTAGCCATCCG
1 ATCTCTTACCCCGAGCCTGGGGCAAATTGCAACCATCCA
* * * * *
687608 ATCTCTTACCTCGAGCTTGGGGCAGA-T-C-ATCATCAGTAA
1 ATCTCTTACCCCGAGCCTGGGGCAAATTGCAACCATC---CA
* * * * * ** * *
687647 ATCTCTTACCTCGATCATAGGGCAAATTACAGTCATTCG
1 ATCTCTTACCCCGAGCCTGGGGCAAATTGCAACCATCCA
687686 ATCTCTTACCCCGAGCCTGGGGCA
1 ATCTCTTACCCCGAGCCTGGGGCA
687710 GATCATCATC
Statistics
Matches: 110, Mismatches: 25, Indels: 12
0.75 0.17 0.08
Matches are distributed among these distances:
36 4 0.04
38 1 0.01
39 99 0.90
40 1 0.01
41 1 0.01
42 4 0.04
ACGTcount: A:0.24, C:0.31, G:0.20, T:0.26
Consensus pattern (39 bp):
ATCTCTTACCCCGAGCCTGGGGCAAATTGCAACCATCCA
Found at i:687729 original size:39 final size:39
Alignment explanation
Indices: 687567--688032 Score: 256
Period size: 39 Copynumber: 11.9 Consensus size: 39
687557 TGCAACCATC
** *
687567 CAATCTCTTACCCCGAGCCTGGGGCAGATTGT-AGCCA-T
1 CAATCTCTTACCCCGAGCCTGGGGCAGATCATCA-TCAGT
* * *
687605 CCGATCTCTTACCTCGAGCTTGGGGCAGATCATCATCAGT
1 -CAATCTCTTACCCCGAGCCTGGGGCAGATCATCATCAGT
* * * * * * * *
687645 AAATCTCTTACCTCGATCATAGGGCAAATTA-CAGTCATT
1 CAATCTCTTACCCCGAGCCTGGGGCAGATCATCA-TCAGT
*
687684 CGATCTCTTACCCCGAGCCTGGGGCAGATCATCATCAGT
1 CAATCTCTTACCCCGAGCCTGGGGCAGATCATCATCAGT
* *
687723 CAATCTCTTACTCCGAGCCTGAGGCAGATCATCATCAGT
1 CAATCTCTTACCCCGAGCCTGGGGCAGATCATCATCAGT
* * * *
687762 CAATCTCTT-CCTCCAAGCTTGGGGCAGAT--TGCAGCTATT
1 CAATCTCTTACC-CCGAGCCTGGGGCAGATCAT-CATC-AGT
* * * * * *
687801 CGATTTCTTACCCTGAGTCT-GGGCAAATCACCATCAG-
1 CAATCTCTTACCCCGAGCCTGGGGCAGATCATCATCAGT
* ** *
687838 CAAATCTCTTACCCCAAGCCAAGGGCAGATCACCATCAG-
1 C-AATCTCTTACCCCGAGCCTGGGGCAGATCATCATCAGT
* ** * * * * *
687877 CAAATCTCTTGCCTTGATCATGAGGCAGAT--TGCAGCTATT
1 C-AATCTCTTACCCCGAGCCTGGGGCAGATCAT-CATC-AGT
* * * * **
687917 CGATCTCTTACCCCGAGCTTGGGACAGATCACCATCAAC
1 CAATCTCTTACCCCGAGCCTGGGGCAGATCATCATCAGT
* * * *
687956 CAATCTCTTACCCCAAGCCTGGGGTAGAT--TGCAGCCACT
1 CAATCTCTTACCCCGAGCCTGGGGCAGATCAT-CA-TCAGT
* * *
687995 CGATCTATTACCCCGAGCTTGGGGGCAGATCATCATCA
1 CAATCTCTTACCCCGAGCCT-GGGGCAGATCATCATCA
688033 ACAAATCTCA
Statistics
Matches: 317, Mismatches: 88, Indels: 43
0.71 0.20 0.10
Matches are distributed among these distances:
37 2 0.01
38 32 0.10
39 260 0.82
40 20 0.06
41 2 0.01
42 1 0.00
ACGTcount: A:0.25, C:0.30, G:0.20, T:0.25
Consensus pattern (39 bp):
CAATCTCTTACCCCGAGCCTGGGGCAGATCATCATCAGT
Found at i:687749 original size:117 final size:115
Alignment explanation
Indices: 687569--687976 Score: 416
Period size: 117 Copynumber: 3.5 Consensus size: 115
687559 CAACCATCCA
* * * * * *
687569 ATCTCTTACCCCGAGCCTGGGGCAGATTGTAGCCATC---CGATCTCTTACCTCGAGCTTGGGGC
1 ATCTCTTACCCCGAGCCTGGGGCAGA-T-CA-CCATCAGTCAATCTCTTACCCCAAGCCTGAGGC
* *
687631 AGATCATCATCAGTAAATCTCTTACCTCGATCATAGGGCAAATTACAG-TCATTCG
63 AGATCATCATCAGTAAATCTCTT-CCTCGATCAT-GGGCAGATTGCAGCT-ATTCG
* * *
687686 ATCTCTTACCCCGAGCCTGGGGCAGATCATCATCAGTCAATCTCTTACTCCGAGCCTGAGGCAGA
1 ATCTCTTACCCCGAGCCTGGGGCAGATCACCATCAGTCAATCTCTTACCCCAAGCCTGAGGCAGA
* * * *
687751 TCATCATCAGTCAATCTCTTCCTCCAAGCTTGGGGCAGATTGCAGCTATTCG
66 TCATCATCAGTAAATCTCTTCCT-CGATCAT-GGGCAGATTGCAGCTATTCG
* * * * *
687803 ATTTCTTACCCTGAGTCT-GGGCAAATCACCATCAG-CAAATCTCTTACCCCAAGCC-AAGGGCA
1 ATCTCTTACCCCGAGCCTGGGGCAGATCACCATCAGTC-AATCTCTTACCCCAAGCCTGA-GGCA
* * *
687865 GATCACCATCAGCAAATCTCTTGCCTTGATCATGAGGCAGATTGCAGCTATTCG
64 GATCATCATCAGTAAATCTCTT-CCTCGATCATG-GGCAGATTGCAGCTATTCG
* * **
687919 ATCTCTTACCCCGAGCTTGGGACAGATCACCATCAACCAATCTCTTACCCCAAGCCTG
1 ATCTCTTACCCCGAGCCTGGGGCAGATCACCATCAGTCAATCTCTTACCCCAAGCCTG
687977 GGGTAGATTG
Statistics
Matches: 242, Mismatches: 37, Indels: 23
0.80 0.12 0.08
Matches are distributed among these distances:
114 4 0.02
115 4 0.02
116 94 0.39
117 138 0.57
118 2 0.01
ACGTcount: A:0.25, C:0.31, G:0.19, T:0.26
Consensus pattern (115 bp):
ATCTCTTACCCCGAGCCTGGGGCAGATCACCATCAGTCAATCTCTTACCCCAAGCCTGAGGCAGA
TCATCATCAGTAAATCTCTTCCTCGATCATGGGCAGATTGCAGCTATTCG
Found at i:688552 original size:6 final size:6
Alignment explanation
Indices: 688543--688574 Score: 55
Period size: 6 Copynumber: 5.3 Consensus size: 6
688533 TAAATTTGTT
*
688543 TTTAAA TTTAAA TTTAAA TTTAAA CTTAAA TT
1 TTTAAA TTTAAA TTTAAA TTTAAA TTTAAA TT
688575 AATAATGTCC
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
6 24 1.00
ACGTcount: A:0.47, C:0.03, G:0.00, T:0.50
Consensus pattern (6 bp):
TTTAAA
Found at i:692844 original size:29 final size:30
Alignment explanation
Indices: 692807--692887 Score: 87
Period size: 30 Copynumber: 2.7 Consensus size: 30
692797 TTTTTTTGCC
692807 AATTTTTTTAAATTTTAATT-AGAC-CTTAA
1 AATTTTTTTAAATTTTAATTAAG-CTCTTAA
* *
692836 TATTTTTTTAAAAATTT-ATTAAGCTCTTAA
1 AATTTTTTT-AAATTTTAATTAAGCTCTTAA
* *
692866 AATTTTTTAAAATTTTAGTTAA
1 AATTTTTTTAAATTTTAATTAA
692888 ATTTCTCAAA
Statistics
Matches: 42, Mismatches: 6, Indels: 7
0.76 0.11 0.13
Matches are distributed among these distances:
29 18 0.43
30 24 0.57
ACGTcount: A:0.38, C:0.05, G:0.04, T:0.53
Consensus pattern (30 bp):
AATTTTTTTAAATTTTAATTAAGCTCTTAA
Found at i:693896 original size:15 final size:15
Alignment explanation
Indices: 693876--693904 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
693866 GGACACTGCC
693876 ATTTTAATTATATAG
1 ATTTTAATTATATAG
693891 ATTTTAATTATATA
1 ATTTTAATTATATA
693905 TTCAATAATC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.41, C:0.00, G:0.03, T:0.55
Consensus pattern (15 bp):
ATTTTAATTATATAG
Found at i:694154 original size:27 final size:26
Alignment explanation
Indices: 694123--694173 Score: 68
Period size: 26 Copynumber: 1.9 Consensus size: 26
694113 AAACTTTCAC
694123 AATTTATATTTAATTAAT-AATTTTTTT
1 AATTTA-ATTT-ATTAATCAATTTTTTT
*
694150 AATTTAATTTTTTAATCAATTTTT
1 AATTTAATTTATTAATCAATTTTT
694174 AATATAATTT
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
25 5 0.23
26 11 0.50
27 6 0.27
ACGTcount: A:0.35, C:0.02, G:0.00, T:0.63
Consensus pattern (26 bp):
AATTTAATTTATTAATCAATTTTTTT
Found at i:694162 original size:13 final size:13
Alignment explanation
Indices: 694144--694185 Score: 52
Period size: 13 Copynumber: 3.4 Consensus size: 13
694134 AATTAATAAT
694144 TTTTTTAATTTAA
1 TTTTTTAATTTAA
*
694157 TTTTTTAA-TCAA
1 TTTTTTAATTTAA
*
694169 -TTTTTAATATAA
1 TTTTTTAATTTAA
694181 TTTTT
1 TTTTT
694186 ATATTAACTT
Statistics
Matches: 24, Mismatches: 3, Indels: 4
0.77 0.10 0.13
Matches are distributed among these distances:
11 7 0.29
12 5 0.21
13 12 0.50
ACGTcount: A:0.31, C:0.02, G:0.00, T:0.67
Consensus pattern (13 bp):
TTTTTTAATTTAA
Found at i:694182 original size:12 final size:11
Alignment explanation
Indices: 694145--694202 Score: 53
Period size: 12 Copynumber: 4.8 Consensus size: 11
694135 ATTAATAATT
694145 TTTTTAATTTAA
1 TTTTTAA-TTAA
*
694157 TTTTTTAATCAA
1 -TTTTTAATTAA
694169 TTTTTAATATAA
1 TTTTTAAT-TAA
694181 TTTTTATATTAA
1 TTTTTA-ATTAA
*
694193 CTTTGTAATT
1 -TTTTTAATT
694203 TTTTATGTTC
Statistics
Matches: 39, Mismatches: 3, Indels: 7
0.80 0.06 0.14
Matches are distributed among these distances:
11 8 0.21
12 17 0.44
13 14 0.36
ACGTcount: A:0.33, C:0.03, G:0.02, T:0.62
Consensus pattern (11 bp):
TTTTTAATTAA
Found at i:696563 original size:23 final size:23
Alignment explanation
Indices: 696528--696596 Score: 70
Period size: 23 Copynumber: 3.0 Consensus size: 23
696518 TTTTAATATA
*
696528 TTATTCGTATTATTTTATTTATTG
1 TTATTCAT-TTATTTTATTTATTG
* *
696552 TTCTTCTTTTA-TTTATTTATTTG
1 TTATTCATTTATTTTATTTA-TTG
696575 TTATTCATTT-TTTTATGTTATT
1 TTATTCATTTATTTTAT-TTATT
696597 TATATTTTTC
Statistics
Matches: 38, Mismatches: 4, Indels: 7
0.78 0.08 0.14
Matches are distributed among these distances:
22 8 0.21
23 21 0.55
24 9 0.24
ACGTcount: A:0.17, C:0.06, G:0.06, T:0.71
Consensus pattern (23 bp):
TTATTCATTTATTTTATTTATTG
Found at i:696645 original size:17 final size:18
Alignment explanation
Indices: 696609--696646 Score: 51
Period size: 17 Copynumber: 2.2 Consensus size: 18
696599 TATTTTTCCC
*
696609 TTTATTTAACTTTATTTA
1 TTTATTTAACTTTATGTA
*
696627 TTTATTT-ATTTTATGTA
1 TTTATTTAACTTTATGTA
696644 TTT
1 TTT
696647 GATGTATTTG
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
17 11 0.61
18 7 0.39
ACGTcount: A:0.24, C:0.03, G:0.03, T:0.71
Consensus pattern (18 bp):
TTTATTTAACTTTATGTA
Found at i:696725 original size:33 final size:31
Alignment explanation
Indices: 696619--696733 Score: 76
Period size: 32 Copynumber: 3.5 Consensus size: 31
696609 TTTATTTAAC
696619 TTTATTTA-TTTATTTATTT-TATGTATTTGATGTA
1 TTTATTTATTTTATTTATTTATAT-T-TTTGA---A
* **
696653 TTT-GTTATTTTTATGTTATTTATATTTTTGCC
1 TTTATTTA-TTTTAT-TTATTTATATTTTTGAA
696685 TTTATTTATTTTCATTTATTTATCATTTTT-AA
1 TTTATTTATTTT-ATTTATTTAT-ATTTTTGAA
*
696717 TTTAATTTAATTTATTT
1 TTT-ATTTATTTTATTT
696734 GGTATTTATT
Statistics
Matches: 66, Mismatches: 7, Indels: 18
0.73 0.08 0.20
Matches are distributed among these distances:
32 22 0.33
33 22 0.33
34 3 0.05
35 9 0.14
36 7 0.11
37 3 0.05
ACGTcount: A:0.23, C:0.03, G:0.05, T:0.69
Consensus pattern (31 bp):
TTTATTTATTTTATTTATTTATATTTTTGAA
Found at i:696742 original size:76 final size:75
Alignment explanation
Indices: 696585--696740 Score: 190
Period size: 76 Copynumber: 2.0 Consensus size: 75
696575 TTATTCATTT
* *
696585 TTTTATGTTATTTATATTTTTCCCTTTATTTAACTTTATTTATTTATTTATTTTATGTATTTGAT
1 TTTTATGTTATTTATATTTTTCCCTTTATTTAACTTTATTTATTTATTTATTTAATGTATTTAAT
*
696650 GTATTTGTTA
66 GTATTTGGTA
* * *
696660 TTTTTATGTTATTTATATTTTTGCCTTTATTT-ATTTTCATTTATTTATCATT-TTTAATTTAAT
1 -TTTTATGTTATTTATATTTTTCCCTTTATTTAACTTT-ATTTATTTAT--TTATTTAATGT-AT
*
696723 TTAATTTATTTGGTA
61 TTAATGTATTTGGTA
696738 TTT
1 TTT
696741 ATTTGTATGT
Statistics
Matches: 69, Mismatches: 7, Indels: 7
0.83 0.08 0.08
Matches are distributed among these distances:
75 4 0.06
76 40 0.58
77 9 0.13
78 16 0.23
ACGTcount: A:0.22, C:0.05, G:0.06, T:0.67
Consensus pattern (75 bp):
TTTTATGTTATTTATATTTTTCCCTTTATTTAACTTTATTTATTTATTTATTTAATGTATTTAAT
GTATTTGGTA
Found at i:696744 original size:4 final size:4
Alignment explanation
Indices: 696559--696733 Score: 63
Period size: 4 Copynumber: 40.8 Consensus size: 4
696549 TTGTTCTTCT
* * * *
696559 TTTA TTTA TTTA TTT- GTTA TTCA TTTT TTTA TGTTA TTTA TATT- TTTCCC
1 TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA T-TTA TTTA T-TTA TTT--A
* * *
696609 TTTA TTTAA CTTTA TTTA TTTA TTTA TTTTA TGTA TTTGA TGTA TTTG
1 TTTA TTT-A -TTTA TTTA TTTA TTTA -TTTA TTTA TTT-A TTTA TTTA
* *
696657 TTATT TTTA TGTTA TTTA TATT- TTTGCC TTTA TTTA TTTTCA TTTA TTTA
1 TT-TA TTTA T-TTA TTTA T-TTA TTT--A TTTA TTTA -TTT-A TTTA TTTA
* *
696707 -TCA TTT- TTAA TTTAA TTTAA TTTA TTT
1 TTTA TTTA TTTA TTT-A TTT-A TTTA TTT
696734 GGTATTTATT
Statistics
Matches: 131, Mismatches: 19, Indels: 42
0.68 0.10 0.22
Matches are distributed among these distances:
3 10 0.08
4 72 0.55
5 39 0.30
6 10 0.08
ACGTcount: A:0.22, C:0.05, G:0.05, T:0.69
Consensus pattern (4 bp):
TTTA
Found at i:700377 original size:54 final size:54
Alignment explanation
Indices: 700319--700548 Score: 176
Period size: 54 Copynumber: 4.2 Consensus size: 54
700309 ATAGAGTTTA
* * * *
700319 GCTCTTACGAGCCCAAAATAGAGTATTGTTCCTCCGAGCCAGAATCAGAATAAC
1 GCTCTTTCGAGCCCAAAATAGAGTATCGCTCCTCCGAGCCAGAATCAAAATAAC
* * * * *
700373 GCTCTTTCGAGCCGAAAATAGAGTATCGCTCTTTCGAGCTAGAATCAAAATATC
1 GCTCTTTCGAGCCCAAAATAGAGTATCGCTCCTCCGAGCCAGAATCAAAATAAC
* * * * * * * * *
700427 GCTCTTTCGAG-CCAGAATCAGAATATCTCTCTTTCGAGCCAGAAACAGAGTATC
1 GCTCTTTCGAGCCCAAAAT-AGAGTATCGCTCCTCCGAGCCAGAATCAAAATAAC
* * * * * * * * *
700481 GCTCTTTCGAG-CCAGAATCAGAATATCGCTCTTTCAAGCCAGAGTCCAGAGTAAT
1 GCTCTTTCGAGCCCAAAAT-AGAGTATCGCTCCTCCGAGCCAGAAT-CAAAATAAC
700536 GCTCTTTCGAGCC
1 GCTCTTTCGAGCC
700549 AGAATACCGA
Statistics
Matches: 150, Mismatches: 23, Indels: 4
0.85 0.13 0.02
Matches are distributed among these distances:
53 5 0.03
54 126 0.84
55 18 0.12
56 1 0.01
ACGTcount: A:0.30, C:0.26, G:0.19, T:0.26
Consensus pattern (54 bp):
GCTCTTTCGAGCCCAAAATAGAGTATCGCTCCTCCGAGCCAGAATCAAAATAAC
Found at i:700383 original size:27 final size:27
Alignment explanation
Indices: 700353--700588 Score: 262
Period size: 27 Copynumber: 8.6 Consensus size: 27
700343 ATTGTTCCTC
*
700353 CGAGCCAGAATCAGAATAACGCTCTTT
1 CGAGCCAGAATCAGAATATCGCTCTTT
* *
700380 CGAGCCGAAAAT-AGAGTATCGCTCTTT
1 CGAGCC-AGAATCAGAATATCGCTCTTT
* *
700407 CGAGCTAGAATCAAAATATCGCTCTTT
1 CGAGCCAGAATCAGAATATCGCTCTTT
*
700434 CGAGCCAGAATCAGAATATCTCTCTTT
1 CGAGCCAGAATCAGAATATCGCTCTTT
* *
700461 CGAGCCAGAAACAGAGTATCGCTCTTT
1 CGAGCCAGAATCAGAATATCGCTCTTT
700488 CGAGCCAGAATCAGAATATCGCTCTTT
1 CGAGCCAGAATCAGAATATCGCTCTTT
* * *
700515 CAAGCCAGAGTCCAGAGTAAT-GCTCTTT
1 CGAGCCAGAAT-CAGAAT-ATCGCTCTTT
* * * *
700543 CGAGCCAGAATACCGAGTAGT-GGTCTTA
1 CGAGCCAGAAT-CAGAATA-TCGCTCTTT
700571 CGAGCCAGAATACAGAAT
1 CGAGCCAGAAT-CAGAAT
700589 TTTTCTCCAG
Statistics
Matches: 178, Mismatches: 26, Indels: 9
0.84 0.12 0.04
Matches are distributed among these distances:
26 4 0.02
27 120 0.67
28 52 0.29
29 2 0.01
ACGTcount: A:0.31, C:0.24, G:0.20, T:0.24
Consensus pattern (27 bp):
CGAGCCAGAATCAGAATATCGCTCTTT
Found at i:700438 original size:81 final size:81
Alignment explanation
Indices: 700353--700581 Score: 300
Period size: 81 Copynumber: 2.8 Consensus size: 81
700343 ATTGTTCCTC
* *
700353 CGAGCCAGAATCAGAATAACGCTCTTTCGAGCC-GAAAATAGAGTATCGCTCTTTCGAGCTAGAA
1 CGAGCCAGAATCAGAATAACGCTCTTTCGAGCCAG-AAACAGAGTATCGCTCTTTCGAGCCAGAA
700417 TCAAAATATCGCTCTTT
65 TCAAAATATCGCTCTTT
* *
700434 CGAGCCAGAATCAGAATATCTCTCTTTCGAGCCAGAAACAGAGTATCGCTCTTTCGAGCCAGAAT
1 CGAGCCAGAATCAGAATAACGCTCTTTCGAGCCAGAAACAGAGTATCGCTCTTTCGAGCCAGAAT
*
700499 CAGAATATCGCTCTTT
66 CAAAATATCGCTCTTT
* * * * * * *
700515 CAAGCCAGAGTCCAGAGTAATGCTCTTTCGAGCCAGAATACCGAGTAGT-GGTCTTACGAGCCAG
1 CGAGCCAGAAT-CAGAATAACGCTCTTTCGAGCCAGAA-ACAGAGTA-TCGCTCTTTCGAGCCAG
700579 AAT
63 AAT
700582 ACAGAATTTT
Statistics
Matches: 130, Mismatches: 14, Indels: 6
0.87 0.09 0.04
Matches are distributed among these distances:
81 83 0.64
82 23 0.18
83 23 0.18
84 1 0.01
ACGTcount: A:0.31, C:0.24, G:0.21, T:0.24
Consensus pattern (81 bp):
CGAGCCAGAATCAGAATAACGCTCTTTCGAGCCAGAAACAGAGTATCGCTCTTTCGAGCCAGAAT
CAAAATATCGCTCTTT
Found at i:705637 original size:7 final size:7
Alignment explanation
Indices: 705625--705651 Score: 54
Period size: 7 Copynumber: 3.9 Consensus size: 7
705615 ACTATAAATA
705625 GAAGAAT
1 GAAGAAT
705632 GAAGAAT
1 GAAGAAT
705639 GAAGAAT
1 GAAGAAT
705646 GAAGAA
1 GAAGAA
705652 ATCATCAAGA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 20 1.00
ACGTcount: A:0.59, C:0.00, G:0.30, T:0.11
Consensus pattern (7 bp):
GAAGAAT
Found at i:719419 original size:21 final size:22
Alignment explanation
Indices: 719395--719435 Score: 66
Period size: 21 Copynumber: 1.9 Consensus size: 22
719385 CCTGTACTAG
719395 TTCTACCGAAACAAG-CATGAT
1 TTCTACCGAAACAAGTCATGAT
*
719416 TTCTACCGACACAAGTCATG
1 TTCTACCGAAACAAGTCATG
719436 CAACTACCGA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 14 0.78
22 4 0.22
ACGTcount: A:0.34, C:0.27, G:0.15, T:0.24
Consensus pattern (22 bp):
TTCTACCGAAACAAGTCATGAT
Found at i:721240 original size:22 final size:22
Alignment explanation
Indices: 721215--721266 Score: 104
Period size: 22 Copynumber: 2.4 Consensus size: 22
721205 TCATTAAGCT
721215 TTAATTAATCATTTTTTTAATC
1 TTAATTAATCATTTTTTTAATC
721237 TTAATTAATCATTTTTTTAATC
1 TTAATTAATCATTTTTTTAATC
721259 TTAATTAA
1 TTAATTAA
721267 ATCTATTTAT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 30 1.00
ACGTcount: A:0.35, C:0.08, G:0.00, T:0.58
Consensus pattern (22 bp):
TTAATTAATCATTTTTTTAATC
Found at i:724135 original size:52 final size:52
Alignment explanation
Indices: 724052--724666 Score: 689
Period size: 52 Copynumber: 11.8 Consensus size: 52
724042 TTCTCATTTA
*
724052 ATACTCACGATGACACATAGTCATCGAACCTCATAATCTGAAAAGGATTCAT
1 ATACTCACGATGACACATAGTCATCGGACCTCATAATCTGAAAAGGATTCAT
* * *
724104 ATACTCACGATGACAAATAGTCATCGGACCTCATAATCCGTAAAGGATTCAT
1 ATACTCACGATGACACATAGTCATCGGACCTCATAATCTGAAAAGGATTCAT
* * *
724156 ATACTCATGATGACAC--AGTCATCGGACTTCATAAT-TCGTAAAGGATTCAT
1 ATACTCACGATGACACATAGTCATCGGACCTCATAATCT-GAAAAGGATTCAT
* * *
724206 ATACTCACGACGACACATAGTCATCGGACCTTATAATCTGTAAAGGATTCAT
1 ATACTCACGATGACACATAGTCATCGGACCTCATAATCTGAAAAGGATTCAT
* * * *
724258 ATACTCATGATGACACATAGTCATTGGACCTCATAATCCGTAAAGGATTCAT
1 ATACTCACGATGACACATAGTCATCGGACCTCATAATCTGAAAAGGATTCAT
* * *
724310 ATACTCATGATGACACATAGTCATCAGACCTCATAATCCGTAAAA-GATTCAT
1 ATACTCACGATGACACATAGTCATCGGACCTCATAATCTG-AAAAGGATTCAT
* *
724362 ATACTCACGATGACACATAGTCATCAGACCTCATAATCCGTAAAA-GATTCAT
1 ATACTCACGATGACACATAGTCATCGGACCTCATAATCTG-AAAAGGATTCAT
* *
724414 ATACTCACGATGACACATAGTCATCGGACCTTATAATC-CATAAAGGATTCAT
1 ATACTCACGATGACACATAGTCATCGGACCTCATAATCTGA-AAAGGATTCAT
* * * * **
724466 ATACTCACGATGACACATAGTCATCAGACCTCATAATTTG--CA--TTTGTT
1 ATACTCACGATGACACATAGTCATCGGACCTCATAATCTGAAAAGGATTCAT
* ** * *
724514 A-ACTCACGATGGCACGGAGTCATCGGACCT-TTAATCCAT-AATAGGATCAATTTCTCATTT
1 ATACTCACGATGACACATAGTCATCGGACCTCATAAT-C-TGAAAAGG----A--T-TCA--T
*
724574 AATACTCACGATGACACATAGTCATCGAACCTCATAATCTGAAAAGGATTCAT
1 -ATACTCACGATGACACATAGTCATCGGACCTCATAATCTGAAAAGGATTCAT
*
724627 ATACTCACGATGACACATAGTCATCAGACCTCATAATCTG
1 ATACTCACGATGACACATAGTCATCGGACCTCATAATCTG
724667 TAACAATAGT
Statistics
Matches: 486, Mismatches: 50, Indels: 54
0.82 0.08 0.09
Matches are distributed among these distances:
46 4 0.01
47 25 0.05
48 5 0.01
49 1 0.00
50 47 0.10
51 3 0.01
52 351 0.72
53 5 0.01
55 3 0.01
56 1 0.00
57 1 0.00
58 2 0.00
60 1 0.00
61 2 0.00
62 31 0.06
63 4 0.01
ACGTcount: A:0.36, C:0.23, G:0.14, T:0.27
Consensus pattern (52 bp):
ATACTCACGATGACACATAGTCATCGGACCTCATAATCTGAAAAGGATTCAT
Found at i:724340 original size:104 final size:104
Alignment explanation
Indices: 724052--724669 Score: 759
Period size: 104 Copynumber: 5.9 Consensus size: 104
724042 TTCTCATTTA
* * *
724052 ATACTCACGATGACACATAGTCATCGAACCTCATAATCTGAAAAGGATTCATATACTCACGATGA
1 ATACTCACGATGACACATAGTCATCGGACCTCATAATCCGTAAAGGATTCATATACTCACGATGA
*
724117 CAAATAGTCATCGGACCTCATAATCCGTAAAGGATTCAT
66 CACATAGTCATCGGACCTCATAATCCGTAAAGGATTCAT
* * * *
724156 ATACTCATGATGACAC--AGTCATCGGACTTCATAATTCGTAAAGGATTCATATACTCACGACGA
1 ATACTCACGATGACACATAGTCATCGGACCTCATAATCCGTAAAGGATTCATATACTCACGATGA
* *
724219 CACATAGTCATCGGACCTTATAATCTGTAAAGGATTCAT
66 CACATAGTCATCGGACCTCATAATCCGTAAAGGATTCAT
* * *
724258 ATACTCATGATGACACATAGTCATTGGACCTCATAATCCGTAAAGGATTCATATACTCATGATGA
1 ATACTCACGATGACACATAGTCATCGGACCTCATAATCCGTAAAGGATTCATATACTCACGATGA
* *
724323 CACATAGTCATCAGACCTCATAATCCGTAAAAGATTCAT
66 CACATAGTCATCGGACCTCATAATCCGTAAAGGATTCAT
* *
724362 ATACTCACGATGACACATAGTCATCAGACCTCATAATCCGTAAAAGATTCATATACTCACGATGA
1 ATACTCACGATGACACATAGTCATCGGACCTCATAATCCGTAAAGGATTCATATACTCACGATGA
* *
724427 CACATAGTCATCGGACCTTATAATCCATAAAGGATTCAT
66 CACATAGTCATCGGACCTCATAATCCGTAAAGGATTCAT
* * * **
724466 ATACTCACGATGACACATAGTCATCAGACCTCATAAT---T--TGCATTTGT-TAACTCACGATG
1 ATACTCACGATGACACATAGTCATCGGACCTCATAATCCGTAAAGGATTCATAT-ACTCACGATG
* ** * *
724525 GCACGGAGTCATCGGACCT-TTAATCCATAATAGGATCAATTTCTCATTT
65 ACACATAGTCATCGGACCTCATAATCCGTAA-AGG----A--T-TCA--T
* * *
724574 AATACTCACGATGACACATAGTCATCGAACCTCATAATCTGAAAAGGATTCATATACTCACGATG
1 -ATACTCACGATGACACATAGTCATCGGACCTCATAATCCGTAAAGGATTCATATACTCACGATG
* *
724639 ACACATAGTCATCAGACCTCATAATCTGTAA
65 ACACATAGTCATCGGACCTCATAATCCGTAA
724670 CAATAGTCAT
Statistics
Matches: 442, Mismatches: 51, Indels: 31
0.84 0.10 0.06
Matches are distributed among these distances:
98 11 0.02
99 33 0.07
101 1 0.00
102 93 0.21
103 1 0.00
104 224 0.51
105 1 0.00
106 3 0.01
108 1 0.00
109 35 0.08
114 30 0.07
115 9 0.02
ACGTcount: A:0.36, C:0.23, G:0.14, T:0.27
Consensus pattern (104 bp):
ATACTCACGATGACACATAGTCATCGGACCTCATAATCCGTAAAGGATTCATATACTCACGATGA
CACATAGTCATCGGACCTCATAATCCGTAAAGGATTCAT
Found at i:724420 original size:26 final size:26
Alignment explanation
Indices: 724287--724420 Score: 64
Period size: 26 Copynumber: 5.2 Consensus size: 26
724277 GTCATTGGAC
*
724287 CTCATAATCCGTAAAGGATTCATATA
1 CTCATAATCCGTAAAAGATTCATATA
* * * * *
724313 CTCATGAT--G-ACACATAGTCATCAGA
1 CTCATAATCCGTA-AAAGATTCAT-ATA
724338 CCTCATAATCCGTAAAAGATTCATATA
1 -CTCATAATCCGTAAAAGATTCATATA
** * * * *
724365 CTCACGAT--G-ACACATAGTCATCAGA
1 CTCATAATCCGTA-AAAGATTCAT-ATA
724390 CCTCATAATCCGTAAAAGATTCATATA
1 -CTCATAATCCGTAAAAGATTCATATA
724417 CTCA
1 CTCA
724421 CGATGACACA
Statistics
Matches: 73, Mismatches: 23, Indels: 24
0.61 0.19 0.20
Matches are distributed among these distances:
23 2 0.03
24 15 0.21
25 4 0.05
26 30 0.41
27 4 0.05
28 16 0.22
29 2 0.03
ACGTcount: A:0.38, C:0.24, G:0.11, T:0.27
Consensus pattern (26 bp):
CTCATAATCCGTAAAAGATTCATATA
Found at i:724731 original size:81 final size:81
Alignment explanation
Indices: 724591--724750 Score: 250
Period size: 81 Copynumber: 2.0 Consensus size: 81
724581 ACGATGACAC
724591 ATAGTCATCGAACCTCATAATCTGAAAAGGATTCATATACTCACGATGACACATAGTCATCAGAC
1 ATAGTCATCGAACCTCATAATCTGAAAAGGATTCATATACTCACGATGACACATAGTCATCAGAC
*
724656 CTCATAATCTGTAACA
66 CTCATAATCCGTAACA
* * * * *
724672 ATAGTCATCGGACCTCATAATGC-GTAAAGGATTCATATACTCATGATGACACATGGTCATCGGA
1 ATAGTCATCGAACCTCATAAT-CTGAAAAGGATTCATATACTCACGATGACACATAGTCATCAGA
724736 CCTCATAATCCGTAA
65 CCTCATAATCCGTAA
724751 AGGATTCATA
Statistics
Matches: 72, Mismatches: 6, Indels: 2
0.90 0.08 0.03
Matches are distributed among these distances:
81 71 0.99
82 1 0.01
ACGTcount: A:0.36, C:0.23, G:0.15, T:0.26
Consensus pattern (81 bp):
ATAGTCATCGAACCTCATAATCTGAAAAGGATTCATATACTCACGATGACACATAGTCATCAGAC
CTCATAATCCGTAACA
Found at i:724737 original size:52 final size:52
Alignment explanation
Indices: 724672--724946 Score: 442
Period size: 52 Copynumber: 5.3 Consensus size: 52
724662 ATCTGTAACA
* *
724672 ATAGTCATCGGACCTCATAATGCGTAAAGGATTCATATACTCATGATGACAC
1 ATAGTCATCGGACCTCATAATCCGTAAAGGATTCATATACTCACGATGACAC
* * *
724724 ATGGTCATCGGACCTCATAATCCGTAAAGGATTCATATACTCATGATGACAG
1 ATAGTCATCGGACCTCATAATCCGTAAAGGATTCATATACTCACGATGACAC
*
724776 ATAGTCATCGGACCTCATAATCCGTAAAGGATTCATATACTCACAATGACAC
1 ATAGTCATCGGACCTCATAATCCGTAAAGGATTCATATACTCACGATGACAC
* * *
724828 ATAGTCATTGGACCTCATAATCCATAAAGCATTCATATACTCACGATGACAC
1 ATAGTCATCGGACCTCATAATCCGTAAAGGATTCATATACTCACGATGACAC
* *
724880 ATAGTCATCAGACCTCATAATCCATAAAGGATTCATATACTCACGATGACAC
1 ATAGTCATCGGACCTCATAATCCGTAAAGGATTCATATACTCACGATGACAC
*
724932 ATAGTCATTGGACCT
1 ATAGTCATCGGACCT
724947 TTTGTATGTA
Statistics
Matches: 207, Mismatches: 16, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
52 207 1.00
ACGTcount: A:0.35, C:0.23, G:0.15, T:0.27
Consensus pattern (52 bp):
ATAGTCATCGGACCTCATAATCCGTAAAGGATTCATATACTCACGATGACAC
Found at i:724766 original size:26 final size:26
Alignment explanation
Indices: 724737--724818 Score: 64
Period size: 26 Copynumber: 3.2 Consensus size: 26
724727 GTCATCGGAC
724737 CTCATAATCCGTAAAGGATTCATATA
1 CTCATAATCCGTAAAGGATTCATATA
* * **
724763 CTCATGAT--G-ACA-GATAGTCATCGGA
1 CTCATAATCCGTAAAGGAT--TCAT-ATA
724788 CCTCATAATCCGTAAAGGATTCATATA
1 -CTCATAATCCGTAAAGGATTCATATA
724815 CTCA
1 CTCA
724819 CAATGACACA
Statistics
Matches: 40, Mismatches: 8, Indels: 16
0.62 0.12 0.25
Matches are distributed among these distances:
22 3 0.08
23 2 0.05
24 5 0.12
25 1 0.03
26 18 0.45
27 1 0.03
28 5 0.12
29 2 0.05
30 3 0.08
ACGTcount: A:0.35, C:0.22, G:0.15, T:0.28
Consensus pattern (26 bp):
CTCATAATCCGTAAAGGATTCATATA
Found at i:729746 original size:21 final size:20
Alignment explanation
Indices: 729708--729746 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
729698 TTGATTAATG
* *
729708 TTTGCTATTTTTTACCAACA
1 TTTGCCATTTTTGACCAACA
729728 TTTGCCATTCTTTGACCAA
1 TTTGCCATT-TTTGACCAA
729747 TGTTTGCAAT
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
20 8 0.50
21 8 0.50
ACGTcount: A:0.23, C:0.23, G:0.08, T:0.46
Consensus pattern (20 bp):
TTTGCCATTTTTGACCAACA
Found at i:729752 original size:21 final size:20
Alignment explanation
Indices: 729704--729758 Score: 56
Period size: 21 Copynumber: 2.7 Consensus size: 20
729694 ATTATTGATT
* *
729704 AATGTTTGCTATTTTTTACC
1 AATGTTTGCCATTTTTGACC
**
729724 AACATTTGCCATTCTTTGACC
1 AATGTTTGCCATT-TTTGACC
*
729745 AATGTTTGCAATTT
1 AATGTTTGCCATTT
729759 CGGCCATTGT
Statistics
Matches: 27, Mismatches: 7, Indels: 2
0.75 0.19 0.06
Matches are distributed among these distances:
20 11 0.41
21 16 0.59
ACGTcount: A:0.24, C:0.18, G:0.11, T:0.47
Consensus pattern (20 bp):
AATGTTTGCCATTTTTGACC
Found at i:729810 original size:20 final size:21
Alignment explanation
Indices: 729770--729820 Score: 59
Period size: 20 Copynumber: 2.5 Consensus size: 21
729760 GGCCATTGTT
**
729770 TAATGTTTCCCATTCTTTGAC
1 TAATGTTTGACATTCTTTGAC
729791 TAATGTTTGACATT-TTTGAC
1 TAATGTTTGACATTCTTTGAC
* *
729811 CAATATTTGA
1 TAATGTTTGA
729821 TCTTCATTCT
Statistics
Matches: 26, Mismatches: 4, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
20 14 0.54
21 12 0.46
ACGTcount: A:0.25, C:0.16, G:0.12, T:0.47
Consensus pattern (21 bp):
TAATGTTTGACATTCTTTGAC
Found at i:730589 original size:100 final size:100
Alignment explanation
Indices: 730388--730577 Score: 301
Period size: 100 Copynumber: 1.9 Consensus size: 100
730378 GGTGGAGTAA
*
730388 AACAAGTAGCAGATCTCAACCTCCACTAAAGTTGTATTGAATGGACTAAAGCCACACCCAAATCC
1 AACAAGTAGCAGATCTCAACCTCCACTAAAGTTGTATAGAATGGACTAAAGCCACACCCAAATCC
* *
730453 TATATTCCTGAAGATGTAGTGGATCAGATCAAACT
66 TATATCCCTAAAGATGTAGTGGATCAGATCAAACT
* * * *
730488 AACAA-TAGCAGATCTCAATCTCCACTGAAGTTGTAGTAGAATGGAGTGAAGCCACACCCAAATC
1 AACAAGTAGCAGATCTCAACCTCCACTAAAGTTGTA-TAGAATGGACTAAAGCCACACCCAAATC
730552 CTATATCCCTAAAGATGTAGTGGATC
65 CTATATCCCTAAAGATGTAGTGGATC
730578 GGACTAAACT
Statistics
Matches: 82, Mismatches: 7, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
99 28 0.34
100 54 0.66
ACGTcount: A:0.36, C:0.23, G:0.17, T:0.24
Consensus pattern (100 bp):
AACAAGTAGCAGATCTCAACCTCCACTAAAGTTGTATAGAATGGACTAAAGCCACACCCAAATCC
TATATCCCTAAAGATGTAGTGGATCAGATCAAACT
Found at i:731424 original size:18 final size:17
Alignment explanation
Indices: 731401--731484 Score: 81
Period size: 18 Copynumber: 5.1 Consensus size: 17
731391 TCCAATTATT
731401 AACCCAAATACAAAATAA
1 AACCCAAA-ACAAAATAA
731419 AACCC-AAAC-AAAT-A
1 AACCCAAAACAAAATAA
*
731433 AACCCTAAACCAAAATAA
1 AACCC-AAAACAAAATAA
731451 AACCC-AAAC-AAAT-A
1 AACCCAAAACAAAATAA
*
731465 AACCCTAAACCAAAATAA
1 AACCC-AAAACAAAATAA
731483 AA
1 AA
731485 TACAAGCCCA
Statistics
Matches: 55, Mismatches: 3, Indels: 16
0.74 0.04 0.22
Matches are distributed among these distances:
14 12 0.22
15 8 0.15
16 11 0.20
17 10 0.18
18 14 0.25
ACGTcount: A:0.64, C:0.26, G:0.00, T:0.10
Consensus pattern (17 bp):
AACCCAAAACAAAATAA
Found at i:731433 original size:15 final size:18
Alignment explanation
Indices: 731411--731484 Score: 92
Period size: 15 Copynumber: 4.6 Consensus size: 18
731401 AACCCAAATA
731411 CAAAATAAAACCC-AAA-
1 CAAAATAAAACCCTAAAC
731427 C-AAAT-AAACCCTAAAC
1 CAAAATAAAACCCTAAAC
731443 CAAAATAAAACCC-AAA-
1 CAAAATAAAACCCTAAAC
731459 C-AAAT-AAACCCTAAAC
1 CAAAATAAAACCCTAAAC
731475 CAAAATAAAA
1 CAAAATAAAA
731485 TACAAGCCCA
Statistics
Matches: 50, Mismatches: 0, Indels: 14
0.78 0.00 0.22
Matches are distributed among these distances:
14 12 0.24
15 14 0.28
16 4 0.08
17 11 0.22
18 9 0.18
ACGTcount: A:0.65, C:0.26, G:0.00, T:0.09
Consensus pattern (18 bp):
CAAAATAAAACCCTAAAC
Found at i:731446 original size:38 final size:37
Alignment explanation
Indices: 731404--731496 Score: 115
Period size: 32 Copynumber: 2.6 Consensus size: 37
731394 AATTATTAAC
731404 CCAAATACAAAATAAAACCCAAACAAATAAACCCTAAA
1 CCAAA-ACAAAATAAAACCCAAACAAATAAACCCTAAA
731442 -C----CAAAATAAAACCCAAACAAATAAACCCTAAA
1 CCAAAACAAAATAAAACCCAAACAAATAAACCCTAAA
* *
731474 CCAAAATAAAATACAAGCCCAAA
1 CCAAAACAAAATA-AAACCCAAA
731497 AGCCCAAGCC
Statistics
Matches: 47, Mismatches: 2, Indels: 12
0.77 0.03 0.20
Matches are distributed among these distances:
32 31 0.66
33 1 0.02
37 7 0.15
38 8 0.17
ACGTcount: A:0.62, C:0.27, G:0.01, T:0.10
Consensus pattern (37 bp):
CCAAAACAAAATAAAACCCAAACAAATAAACCCTAAA
Found at i:731447 original size:32 final size:32
Alignment explanation
Indices: 731411--731484 Score: 148
Period size: 32 Copynumber: 2.3 Consensus size: 32
731401 AACCCAAATA
731411 CAAAATAAAACCCAAACAAATAAACCCTAAAC
1 CAAAATAAAACCCAAACAAATAAACCCTAAAC
731443 CAAAATAAAACCCAAACAAATAAACCCTAAAC
1 CAAAATAAAACCCAAACAAATAAACCCTAAAC
731475 CAAAATAAAA
1 CAAAATAAAA
731485 TACAAGCCCA
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 42 1.00
ACGTcount: A:0.65, C:0.26, G:0.00, T:0.09
Consensus pattern (32 bp):
CAAAATAAAACCCAAACAAATAAACCCTAAAC
Found at i:732808 original size:21 final size:21
Alignment explanation
Indices: 732784--732870 Score: 65
Period size: 21 Copynumber: 4.3 Consensus size: 21
732774 TGGTCCCAAA
*
732784 TTTTTTTATATATATTATTCG
1 TTTTTTTATATTTATTATTCG
*
732805 TTTTATTT-TATTTAGTATT--
1 TTTT-TTTATATTTATTATTCG
* * *
732824 TGTTTTT-TATTTATTGTTCT
1 TTTTTTTATATTTATTATTCG
* * *
732844 TTTTTTTTTATTTGTTATTCA
1 TTTTTTTATATTTATTATTCG
732865 TTTTTT
1 TTTTTT
732871 ACGTTATTTA
Statistics
Matches: 53, Mismatches: 9, Indels: 8
0.76 0.13 0.11
Matches are distributed among these distances:
18 12 0.23
19 3 0.06
20 6 0.11
21 29 0.55
22 3 0.06
ACGTcount: A:0.16, C:0.03, G:0.06, T:0.75
Consensus pattern (21 bp):
TTTTTTTATATTTATTATTCG
Found at i:732869 original size:39 final size:41
Alignment explanation
Indices: 732785--732871 Score: 99
Period size: 39 Copynumber: 2.2 Consensus size: 41
732775 GGTCCCAAAT
**
732785 TTTTTTATATATATTATTCGTTTTATTTTATTTAGTATTTG
1 TTTTTTATATATATTATTCGTTTTATTTTATTTAGTATTCA
* * *
732826 TTTTTTAT-T-TATTGTTCTTTTTTTTTTATTT-GTTATTCA
1 TTTTTTATATATATTATTCGTTTTATTTTATTTAG-TATTCA
732865 TTTTTTA
1 TTTTTTA
732872 CGTTATTTAT
Statistics
Matches: 40, Mismatches: 5, Indels: 4
0.82 0.10 0.08
Matches are distributed among these distances:
38 1 0.03
39 30 0.75
40 1 0.03
41 8 0.20
ACGTcount: A:0.17, C:0.03, G:0.06, T:0.74
Consensus pattern (41 bp):
TTTTTTATATATATTATTCGTTTTATTTTATTTAGTATTCA
Found at i:732906 original size:72 final size:68
Alignment explanation
Indices: 732829--732966 Score: 179
Period size: 72 Copynumber: 2.0 Consensus size: 68
732819 GTATTTGTTT
* * *
732829 TTTATTTATTGT-TCTTTTTTTTTTATTTGTTATTCATTTTTTACGTTATTTATATTCTTGCCTT
1 TTTATTTATT-TATCTATTTTATTTATTTGTTATT--TTTTTT--GCTATTTATATTCTTGCCTT
732893 TATTTAAC
61 TATTTAAC
* *
732901 TTTATTTATTTATGTATTTTATTTATTTGTTATTTTTTTTGCTATTTATATTTTTGCCTTTATTT
1 TTTATTTATTTATCTATTTTATTTATTTGTTATTTTTTTTGCTATTTATATTCTTGCCTTTATTT
732966 A
66 A
732967 TTTTTATTCA
Statistics
Matches: 60, Mismatches: 5, Indels: 6
0.85 0.07 0.08
Matches are distributed among these distances:
68 24 0.40
70 6 0.10
71 1 0.02
72 29 0.48
ACGTcount: A:0.17, C:0.07, G:0.06, T:0.70
Consensus pattern (68 bp):
TTTATTTATTTATCTATTTTATTTATTTGTTATTTTTTTTGCTATTTATATTCTTGCCTTTATTT
AAC
Found at i:732973 original size:68 final size:70
Alignment explanation
Indices: 732827--732974 Score: 185
Period size: 68 Copynumber: 2.1 Consensus size: 70
732817 TAGTATTTGT
* * *
732827 TTTTTATTTATTGTTCTTTTTTTTTTATTTGTTATTCATTTTTTACGTTATTTATATTCTTGCCT
1 TTTTTATTTATTGTTCTATTTTATTTATTTGTTATT-ATTTTTTA-GCTATTTATATTCTTGCCT
732892 TTATTTA
64 TTATTTA
** * *
732899 ACTTTATTTATT-TATGTATTTTATTTATTTGTTATT-TTTTTT-GCTATTTATATTTTTGCCTT
1 TTTTTATTTATTGT-TCTATTTTATTTATTTGTTATTATTTTTTAGCTATTTATATTCTTGCCTT
732961 TATTTA
65 TATTTA
732967 TTTTTATT
1 TTTTTATT
732975 CATTCGTTAA
Statistics
Matches: 66, Mismatches: 9, Indels: 6
0.81 0.11 0.07
Matches are distributed among these distances:
68 30 0.45
70 6 0.09
71 1 0.02
72 29 0.44
ACGTcount: A:0.17, C:0.07, G:0.05, T:0.71
Consensus pattern (70 bp):
TTTTTATTTATTGTTCTATTTTATTTATTTGTTATTATTTTTTAGCTATTTATATTCTTGCCTTT
ATTTA
Found at i:733015 original size:68 final size:68
Alignment explanation
Indices: 732874--733017 Score: 157
Period size: 68 Copynumber: 2.1 Consensus size: 68
732864 ATTTTTTACG
* * * * *
732874 TTATTTATATTCTTGCCTTTATTTAACTTTATTTATTTATGTATTTTATTTATTTGTTATTTTTT
1 TTATTTATATTCTTGCCTTTATTTAACTTTATTCATTCATGTATTTTATTTAATTGTAATTTTAT
*
732939 TTG
66 TTA
* * ** *
732942 CTATTTATATTTTTGCCTTTATTTATTTTTATTCATTCGT-TAATTTTAATTTAATT-TAATTTT
1 TTATTTATATTCTTGCCTTTATTTAACTTTATTCATTCATGT-ATTTT-ATTTAATTGTAATTTT
733005 ATTTA
64 ATTTA
733010 TTATTTAT
1 TTATTTAT
733018 TTGTATGCTA
Statistics
Matches: 62, Mismatches: 12, Indels: 4
0.79 0.15 0.05
Matches are distributed among these distances:
67 1 0.02
68 54 0.87
69 7 0.11
ACGTcount: A:0.22, C:0.06, G:0.04, T:0.67
Consensus pattern (68 bp):
TTATTTATATTCTTGCCTTTATTTAACTTTATTCATTCATGTATTTTATTTAATTGTAATTTTAT
TTA
Found at i:733019 original size:16 final size:16
Alignment explanation
Indices: 732901--733019 Score: 50
Period size: 16 Copynumber: 7.1 Consensus size: 16
732891 TTTATTTAAC
*
732901 TTTATTTATTTATGTAT
1 TTTATTTA-TTATTTAT
732918 TTTATTTATT-TGTTAT
1 TTTATTTATTAT-TTAT
* **
732934 TTTTTTTGCTATTTAT
1 TTTATTTATTATTTAT
732950 ATTT-TTGCCT-TTATTTATT
1 -TTTATT---TATTATTTA-T
* * *
732969 TTTATTCATTCGTTAAT
1 TTTATTTATT-ATTTAT
732986 TTTAATTTA--ATTTAAT
1 TTT-ATTTATTATTT-AT
733002 TTTATTTATTATTTAT
1 TTTATTTATTATTTAT
733018 TT
1 TT
733020 GTATGCTATT
Statistics
Matches: 77, Mismatches: 11, Indels: 29
0.66 0.09 0.25
Matches are distributed among these distances:
15 8 0.10
16 27 0.35
17 22 0.29
18 16 0.21
19 4 0.05
ACGTcount: A:0.22, C:0.04, G:0.04, T:0.70
Consensus pattern (16 bp):
TTTATTTATTATTTAT
Found at i:741921 original size:22 final size:21
Alignment explanation
Indices: 741883--741926 Score: 54
Period size: 22 Copynumber: 2.0 Consensus size: 21
741873 TTCAAGTATG
741883 ATTAAACTTAATCAAATTTAAT
1 ATTAAACTTAATCAAA-TTAAT
*
741905 ATTAAATCTT-ATTAAATTAAT
1 ATTAAA-CTTAATCAAATTAAT
741926 A
1 A
741927 GAACATTACT
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
21 6 0.30
22 11 0.55
23 3 0.15
ACGTcount: A:0.50, C:0.07, G:0.00, T:0.43
Consensus pattern (21 bp):
ATTAAACTTAATCAAATTAAT
Found at i:742010 original size:25 final size:27
Alignment explanation
Indices: 741955--742010 Score: 64
Period size: 25 Copynumber: 2.2 Consensus size: 27
741945 TAAACATTAA
741955 ATTAAAATTAATAATAAGATAATCACT
1 ATTAAAATTAATAATAAGATAATCACT
* * *
741982 -TTAATATTAA-ATTAATATAAT-ACT
1 ATTAAAATTAATAATAAGATAATCACT
742006 ATTAA
1 ATTAA
742011 GATAAGTATT
Statistics
Matches: 25, Mismatches: 3, Indels: 4
0.78 0.09 0.12
Matches are distributed among these distances:
24 3 0.12
25 13 0.52
26 9 0.36
ACGTcount: A:0.54, C:0.05, G:0.02, T:0.39
Consensus pattern (27 bp):
ATTAAAATTAATAATAAGATAATCACT
Found at i:742031 original size:22 final size:19
Alignment explanation
Indices: 742006--742064 Score: 55
Period size: 22 Copynumber: 2.8 Consensus size: 19
741996 ATATAATACT
742006 ATTAAGATAAGTATTAAATTAA
1 ATTAA-ATAA-TATTAAATT-A
*
742028 ATTAAATTAAATATTAAATTT
1 ATTAAA-T-AATATTAAATTA
742049 ATTAAAATAATATTAA
1 ATT-AAATAATATTAA
742065 TTTTGGAATA
Statistics
Matches: 33, Mismatches: 1, Indels: 8
0.79 0.02 0.19
Matches are distributed among these distances:
20 8 0.24
21 5 0.15
22 18 0.55
23 2 0.06
ACGTcount: A:0.56, C:0.00, G:0.03, T:0.41
Consensus pattern (19 bp):
ATTAAATAATATTAAATTA
Found at i:745892 original size:21 final size:21
Alignment explanation
Indices: 745866--745914 Score: 80
Period size: 21 Copynumber: 2.3 Consensus size: 21
745856 TCGAAGTCCG
* *
745866 GTGTTGTGACATGACATGCTA
1 GTGTTGCGACATGACATGATA
745887 GTGTTGCGACATGACATGATA
1 GTGTTGCGACATGACATGATA
745908 GTGTTGC
1 GTGTTGC
745915 TATGCTGCCA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
21 26 1.00
ACGTcount: A:0.22, C:0.14, G:0.31, T:0.33
Consensus pattern (21 bp):
GTGTTGCGACATGACATGATA
Found at i:754837 original size:21 final size:22
Alignment explanation
Indices: 754811--754852 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 22
754801 GATCTTTATA
754811 TCTCAC-CACCTTATTTCTCCT
1 TCTCACTCACCTTATTTCTCCT
**
754832 TCTCACTTTCCTTATTTCTCC
1 TCTCACTCACCTTATTTCTCC
754853 CATACTATGG
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
21 6 0.33
22 12 0.67
ACGTcount: A:0.12, C:0.40, G:0.00, T:0.48
Consensus pattern (22 bp):
TCTCACTCACCTTATTTCTCCT
Found at i:760910 original size:13 final size:13
Alignment explanation
Indices: 760894--760918 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
760884 TTGTTAAGGA
760894 TATTAATCTAAAG
1 TATTAATCTAAAG
760907 TATTAATCTAAA
1 TATTAATCTAAA
760919 CTAATAAATC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.48, C:0.08, G:0.04, T:0.40
Consensus pattern (13 bp):
TATTAATCTAAAG
Found at i:764402 original size:18 final size:18
Alignment explanation
Indices: 764381--764439 Score: 59
Period size: 18 Copynumber: 3.3 Consensus size: 18
764371 TTCCACAGGA
*
764381 TCTTCCTTAGGGTCTTCT
1 TCTTCCTTAGGATCTTCT
* *
764399 TCTTCTTCTA-GATCTTCC
1 TCTTCCT-TAGGATCTTCT
764417 TCTT-CTTCAGGATCTTCT
1 TCTTCCTT-AGGATCTTCT
764435 TCTTC
1 TCTTC
764440 TTCATCATCA
Statistics
Matches: 32, Mismatches: 5, Indels: 7
0.73 0.11 0.16
Matches are distributed among these distances:
16 1 0.03
17 2 0.06
18 27 0.84
19 2 0.06
ACGTcount: A:0.08, C:0.31, G:0.10, T:0.51
Consensus pattern (18 bp):
TCTTCCTTAGGATCTTCT
Found at i:764440 original size:18 final size:17
Alignment explanation
Indices: 764393--764443 Score: 75
Period size: 18 Copynumber: 2.9 Consensus size: 17
764383 TTCCTTAGGG
764393 TCTTCTTCTTCTTCTAGA
1 TCTTCTTCTTCTTC-AGA
*
764411 TCTTCCTCTTCTTCAGGA
1 TCTTCTTCTTCTTCA-GA
764429 TCTTCTTCTTCTTCA
1 TCTTCTTCTTCTTCA
764444 TCATCATCAT
Statistics
Matches: 30, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
17 1 0.03
18 29 0.97
ACGTcount: A:0.10, C:0.31, G:0.06, T:0.53
Consensus pattern (17 bp):
TCTTCTTCTTCTTCAGA
Found at i:764447 original size:3 final size:3
Alignment explanation
Indices: 764441--764466 Score: 52
Period size: 3 Copynumber: 8.7 Consensus size: 3
764431 TTCTTCTTCT
764441 TCA TCA TCA TCA TCA TCA TCA TCA TC
1 TCA TCA TCA TCA TCA TCA TCA TCA TC
764467 TTCTTCTTCT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 23 1.00
ACGTcount: A:0.31, C:0.35, G:0.00, T:0.35
Consensus pattern (3 bp):
TCA
Found at i:773687 original size:52 final size:52
Alignment explanation
Indices: 773507--773687 Score: 256
Period size: 52 Copynumber: 3.5 Consensus size: 52
773497 TTTTCATGTA
* * * *
773507 ATACTCACGATGACACATAGTCAT-AGGACTTTATAATCTGTAAAGGATTCAT
1 ATACTCACGATGACACATAGTCATCA-AACCTCATAATCCGTAAAGGATTCAT
* * * * *
773559 ATACTCACGATGACACATAGTTATCGAACCACATAATCCGTAAATGATACAT
1 ATACTCACGATGACACATAGTCATCAAACCTCATAATCCGTAAAGGATTCAT
*
773611 ATACTCACGATGAAACATAGTCATCAAACCTCATAATCCGTAAAGGATTCAT
1 ATACTCACGATGACACATAGTCATCAAACCTCATAATCCGTAAAGGATTCAT
773663 ATACTCACGATGACACATAGTCATC
1 ATACTCACGATGACACATAGTCATC
773688 GGACCTTTTT
Statistics
Matches: 112, Mismatches: 16, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
52 112 1.00
ACGTcount: A:0.39, C:0.22, G:0.13, T:0.27
Consensus pattern (52 bp):
ATACTCACGATGACACATAGTCATCAAACCTCATAATCCGTAAAGGATTCAT
Found at i:776884 original size:20 final size:18
Alignment explanation
Indices: 776861--776926 Score: 51
Period size: 20 Copynumber: 3.3 Consensus size: 18
776851 TTAAACAAAG
776861 CAAAATGATTTCAACCAAGT
1 CAAAAT-ATTTCAA-CAAGT
* **
776881 CAAAATCATTTTAACACTT
1 CAAAAT-ATTTCAACAAGT
776900 CAAAATATTTCCCAAACAAGT
1 CAAAATATTT--C-AACAAGT
776921 CAAAAT
1 CAAAAT
776927 TGCTGCAGGC
Statistics
Matches: 36, Mismatches: 7, Indels: 5
0.75 0.15 0.10
Matches are distributed among these distances:
18 4 0.11
19 9 0.25
20 12 0.33
21 11 0.31
ACGTcount: A:0.47, C:0.21, G:0.05, T:0.27
Consensus pattern (18 bp):
CAAAATATTTCAACAAGT
Found at i:777794 original size:114 final size:114
Alignment explanation
Indices: 777594--777823 Score: 433
Period size: 114 Copynumber: 2.0 Consensus size: 114
777584 CTTTGTTTTC
* *
777594 TTATTTGTATCTCTTTGAGAGGGTTTATAACTTAAGATTTAGGGTAGAAATCTTAAGGAGTTGTA
1 TTATTTGTATCGCTTTGAGAAGGTTTATAACTTAAGATTTAGGGTAGAAATCTTAAGGAGTTGTA
777659 AGGTTAAACATTGTCCTCAAAGGTTGAACAAATTAGTGAATTTGGGAAA
66 AGGTTAAACATTGTCCTCAAAGGTTGAACAAATTAGTGAATTTGGGAAA
*
777708 TTATTTGTATCGCTTTGAGAAGGTTTATAACTTAAGATTTGGGGTAGAAATCTTAAGGAGTTGTA
1 TTATTTGTATCGCTTTGAGAAGGTTTATAACTTAAGATTTAGGGTAGAAATCTTAAGGAGTTGTA
777773 AGGTTAAACATTGTCCTCAAAGGTTGAACAAATTAGTGAATTTGGGAAA
66 AGGTTAAACATTGTCCTCAAAGGTTGAACAAATTAGTGAATTTGGGAAA
777822 TT
1 TT
777824 CCTTAGTGGT
Statistics
Matches: 113, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
114 113 1.00
ACGTcount: A:0.33, C:0.08, G:0.23, T:0.36
Consensus pattern (114 bp):
TTATTTGTATCGCTTTGAGAAGGTTTATAACTTAAGATTTAGGGTAGAAATCTTAAGGAGTTGTA
AGGTTAAACATTGTCCTCAAAGGTTGAACAAATTAGTGAATTTGGGAAA
Found at i:788750 original size:158 final size:158
Alignment explanation
Indices: 788461--788807 Score: 489
Period size: 158 Copynumber: 2.2 Consensus size: 158
788451 GGCACAAAAT
* *
788461 GTTGGTTAATCCAACTAAAGCTAGGCTCACTTATTGTTCGTCAGTTTAACTGACTAGTGCTAGGC
1 GTTGGTTAATCCAACTAGAGCTAGGCTCACTAATTGTTCGTCAGTTTAACTGACTAGTGCTAGGC
* ** *
788526 ACACATTCGTCAGTTTATCGGACTAGTGTTGGGTGCAAATTCTATTGTGATTTATCCGCCAAGCA
66 ACACATTCGTCAGTTTATAGGACTAGCATTGGGTGCAAATTCTATTGCGATTTATCCGCCAAGCA
* * *
788591 CTGGGTGCCAGGAGTTGACAGA-ATTATC
131 CTGAGTGCCAGAAATTGACA-ATATTATC
* * *
788619 GTTGGTTAATCCAACTAGAGCTGGGCTCACTAATTGTTCGTCAGTTTAATTGACTAGTGCTGGGC
1 GTTGGTTAATCCAACTAGAGCTAGGCTCACTAATTGTTCGTCAGTTTAACTGACTAGTGCTAGGC
* * * * *
788684 ACACATTCGTCGGTTTATATGACTAGCATTGGGTGCAAATTCTATTGCGGTTTATCCGCTAGGCA
66 ACACATTCGTCAGTTTATAGGACTAGCATTGGGTGCAAATTCTATTGCGATTTATCCGCCAAGCA
* * *
788749 CTGAGTGCTAGAAATTTATAATATTATC
131 CTGAGTGCCAGAAATTGACAATATTATC
*
788777 ATTGGTTAATCCAACTAGAGCTAGGCTCACT
1 GTTGGTTAATCCAACTAGAGCTAGGCTCACT
788808 TTTAATATCA
Statistics
Matches: 166, Mismatches: 22, Indels: 2
0.87 0.12 0.01
Matches are distributed among these distances:
157 1 0.01
158 165 0.99
ACGTcount: A:0.25, C:0.19, G:0.23, T:0.33
Consensus pattern (158 bp):
GTTGGTTAATCCAACTAGAGCTAGGCTCACTAATTGTTCGTCAGTTTAACTGACTAGTGCTAGGC
ACACATTCGTCAGTTTATAGGACTAGCATTGGGTGCAAATTCTATTGCGATTTATCCGCCAAGCA
CTGAGTGCCAGAAATTGACAATATTATC
Found at i:789987 original size:25 final size:25
Alignment explanation
Indices: 789953--790000 Score: 87
Period size: 25 Copynumber: 1.9 Consensus size: 25
789943 CAAAGTCTTG
*
789953 ATTCACAACTTGTGTGAGCAATTAT
1 ATTCACAACTCGTGTGAGCAATTAT
789978 ATTCACAACTCGTGTGAGCAATT
1 ATTCACAACTCGTGTGAGCAATT
790001 TAAGTCTTGT
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 22 1.00
ACGTcount: A:0.31, C:0.19, G:0.17, T:0.33
Consensus pattern (25 bp):
ATTCACAACTCGTGTGAGCAATTAT
Found at i:793988 original size:23 final size:23
Alignment explanation
Indices: 793961--794004 Score: 63
Period size: 23 Copynumber: 1.9 Consensus size: 23
793951 AAGATGAAAA
793961 AAAGAAAAAAAGAAA-AAAAAATT
1 AAAG-AAAAAAGAAATAAAAAATT
*
793984 AAAGAAATAAGAAATAAAAAA
1 AAAGAAAAAAGAAATAAAAAA
794005 AATATTCTTA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
22 9 0.47
23 10 0.53
ACGTcount: A:0.82, C:0.00, G:0.09, T:0.09
Consensus pattern (23 bp):
AAAGAAAAAAGAAATAAAAAATT
Found at i:795027 original size:23 final size:24
Alignment explanation
Indices: 794990--795042 Score: 63
Period size: 23 Copynumber: 2.2 Consensus size: 24
794980 TTACATACAT
* * *
794990 TTTAAAGTTTTAATA-ATATTATC
1 TTTAAAATTTGAATATATATAATC
*
795013 TTTAAAATTTGAATATATATAATT
1 TTTAAAATTTGAATATATATAATC
795037 TTTAAA
1 TTTAAA
795043 GAAATTATAA
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
23 13 0.52
24 12 0.48
ACGTcount: A:0.43, C:0.02, G:0.04, T:0.51
Consensus pattern (24 bp):
TTTAAAATTTGAATATATATAATC
Found at i:803772 original size:21 final size:20
Alignment explanation
Indices: 803748--803848 Score: 89
Period size: 20 Copynumber: 5.0 Consensus size: 20
803738 GCCTGAAGCT
*
803748 ATTTTGACTTGTTTGAAAAAC
1 ATTTTGACTTGTTT-AAAATC
** *
803769 ATTTTGAAGTG-TTAAAATG
1 ATTTTGACTTGTTTAAAATC
* *
803788 ATTTTGACTTGGTTGAAATC
1 ATTTTGACTTGTTTAAAATC
803808 ATTTT-ACTTTGTTTAAAATC
1 ATTTTGAC-TTGTTTAAAATC
*
803828 ATTTTAACTTGATTTTAAAAT
1 ATTTTGACTTG--TTTAAAAT
803849 TGTTTCAAAA
Statistics
Matches: 65, Mismatches: 10, Indels: 9
0.77 0.12 0.11
Matches are distributed among these distances:
19 15 0.23
20 31 0.48
21 11 0.17
22 8 0.12
ACGTcount: A:0.33, C:0.07, G:0.13, T:0.48
Consensus pattern (20 bp):
ATTTTGACTTGTTTAAAATC
Found at i:804344 original size:36 final size:37
Alignment explanation
Indices: 804294--804368 Score: 91
Period size: 36 Copynumber: 2.1 Consensus size: 37
804284 AAAAAATTAC
*
804294 TTGTATCTAAAAATAACAAT-AA-TACATTAAGTTCAA
1 TTGTATCTAAAAATAACAATAAAGTA-ATGAAGTTCAA
** *
804330 TTGTATCTTTAAATACCAATAAAGTAATGAAGTTCAA
1 TTGTATCTAAAAATAACAATAAAGTAATGAAGTTCAA
804367 TT
1 TT
804369 AAAACAGAGA
Statistics
Matches: 33, Mismatches: 4, Indels: 3
0.82 0.10 0.08
Matches are distributed among these distances:
36 17 0.52
37 14 0.42
38 2 0.06
ACGTcount: A:0.45, C:0.11, G:0.08, T:0.36
Consensus pattern (37 bp):
TTGTATCTAAAAATAACAATAAAGTAATGAAGTTCAA
Found at i:807446 original size:19 final size:19
Alignment explanation
Indices: 807422--807524 Score: 109
Period size: 19 Copynumber: 5.4 Consensus size: 19
807412 ACAATCCAAG
*
807422 ATTGCTCTAACGAGCCAGT
1 ATTGCTCTTACGAGCCAGT
* *
807441 ATTGCTCTTACAAGCTAGT
1 ATTGCTCTTACGAGCCAGT
* *
807460 ATTGATCTTATGAGCCAGT
1 ATTGCTCTTACGAGCCAGT
**
807479 ATTGCT-AAACGAGCCAGT
1 ATTGCTCTTACGAGCCAGT
*
807497 ATTTGCTCTTACGAGCCAAT
1 A-TTGCTCTTACGAGCCAGT
807517 ATTTGCTC
1 A-TTGCTC
807525 AACTAACCAA
Statistics
Matches: 68, Mismatches: 14, Indels: 3
0.80 0.16 0.04
Matches are distributed among these distances:
18 10 0.15
19 41 0.60
20 17 0.25
ACGTcount: A:0.26, C:0.22, G:0.18, T:0.33
Consensus pattern (19 bp):
ATTGCTCTTACGAGCCAGT
Found at i:807451 original size:38 final size:38
Alignment explanation
Indices: 807409--807484 Score: 91
Period size: 38 Copynumber: 2.0 Consensus size: 38
807399 GAAATAACTC
*
807409 CTTACAATCCAAG-ATTGCTCTAACGAGCCAGTATTGCT
1 CTTACAA-CCAAGTATTGATCTAACGAGCCAGTATTGCT
* * * *
807447 CTTACAAGCTAGTATTGATCTTATGAGCCAGTATTGCT
1 CTTACAACCAAGTATTGATCTAACGAGCCAGTATTGCT
807485 AAACGAGCCA
Statistics
Matches: 32, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
37 3 0.09
38 29 0.91
ACGTcount: A:0.28, C:0.22, G:0.17, T:0.33
Consensus pattern (38 bp):
CTTACAACCAAGTATTGATCTAACGAGCCAGTATTGCT
Found at i:813741 original size:21 final size:21
Alignment explanation
Indices: 813715--813768 Score: 74
Period size: 21 Copynumber: 2.6 Consensus size: 21
813705 TAGTACATAT
*
813715 TTCTACTGATACAAGTGTCT-C
1 TTCTACTGATACAAGTCT-TAC
*
813736 TTCTACTGAAACAAGTCTTAC
1 TTCTACTGATACAAGTCTTAC
813757 TTCTACTGATAC
1 TTCTACTGATAC
813769 TAAAAACTCC
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
20 1 0.03
21 28 0.97
ACGTcount: A:0.28, C:0.24, G:0.11, T:0.37
Consensus pattern (21 bp):
TTCTACTGATACAAGTCTTAC
Found at i:814462 original size:19 final size:19
Alignment explanation
Indices: 814435--814538 Score: 120
Period size: 19 Copynumber: 5.4 Consensus size: 19
814425 TGCAATCCAA
*
814435 TATTGCTCTTACGAGTCAG
1 TATTGCTCTTACGAGCCAG
*
814454 TATTACTCTTACGAGCCAG
1 TATTGCTCTTACGAGCCAG
814473 TATTGCTCTTACGAGCCAG
1 TATTGCTCTTACGAGCCAG
** *
814492 TATTGC-CCAACGAGTCAG
1 TATTGCTCTTACGAGCCAG
* *
814510 TATTTGCTTTTACGAACCAG
1 TA-TTGCTCTTACGAGCCAG
814530 TATTTGCTC
1 TA-TTGCTC
814539 AATGAACCAG
Statistics
Matches: 71, Mismatches: 12, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
18 11 0.15
19 45 0.63
20 15 0.21
ACGTcount: A:0.23, C:0.24, G:0.18, T:0.35
Consensus pattern (19 bp):
TATTGCTCTTACGAGCCAG
Found at i:814549 original size:57 final size:56
Alignment explanation
Indices: 814445--814551 Score: 135
Period size: 57 Copynumber: 1.9 Consensus size: 56
814435 TATTGCTCTT
* * *
814445 ACGAGTCAGTATTACTCTTACGAGCCAGTATTGCTCTTACGAGCCAGTATTGCCCA
1 ACGAGTCAGTATTACTCTTACGAACCAGTATTGCTCTAACGAACCAGTATTGCCCA
* * *
814501 ACGAGTCAGTATTTGCTTTTACGAACCAGTATTTGCTC-AATGAACCAGTAT
1 ACGAGTCAGTA-TTACTCTTACGAACCAGTA-TTGCTCTAACGAACCAGTAT
814552 GCTATTCCCT
Statistics
Matches: 43, Mismatches: 6, Indels: 3
0.83 0.12 0.06
Matches are distributed among these distances:
56 11 0.26
57 26 0.60
58 6 0.14
ACGTcount: A:0.27, C:0.23, G:0.19, T:0.31
Consensus pattern (56 bp):
ACGAGTCAGTATTACTCTTACGAACCAGTATTGCTCTAACGAACCAGTATTGCCCA
Found at i:819895 original size:29 final size:30
Alignment explanation
Indices: 819850--819906 Score: 82
Period size: 30 Copynumber: 1.9 Consensus size: 30
819840 TTACGTTAAC
*
819850 AAGACACCCCTCACA-TTTCTAAGTGGTTCT
1 AAGACAACCCTCACATTTTC-AAGTGGTTCT
819880 AAGACAACCC-CACATTTTCAAGTGGTT
1 AAGACAACCCTCACATTTTCAAGTGGTT
819907 GTCTTGTCCC
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
29 12 0.48
30 13 0.52
ACGTcount: A:0.30, C:0.28, G:0.14, T:0.28
Consensus pattern (30 bp):
AAGACAACCCTCACATTTTCAAGTGGTTCT
Found at i:825591 original size:57 final size:57
Alignment explanation
Indices: 825523--825638 Score: 189
Period size: 57 Copynumber: 2.0 Consensus size: 57
825513 ATCCTACACG
* *
825523 TTACACTACACACCATCTCCGTCCATCCAATGACACCAAATATGGTTCGC-AAGACCC
1 TTACACTACACACAATCTCCGTCCATCCAATCACACCAAATATGGTTCGCTAA-ACCC
*
825580 TTACACTACACACAATCTCCGTCCATCCAATCACACTAAATATGGTTCGCTAAACCC
1 TTACACTACACACAATCTCCGTCCATCCAATCACACCAAATATGGTTCGCTAAACCC
825637 TT
1 TT
825639 CCATCCTCTA
Statistics
Matches: 55, Mismatches: 3, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
57 53 0.96
58 2 0.04
ACGTcount: A:0.32, C:0.35, G:0.09, T:0.24
Consensus pattern (57 bp):
TTACACTACACACAATCTCCGTCCATCCAATCACACCAAATATGGTTCGCTAAACCC
Found at i:826597 original size:29 final size:29
Alignment explanation
Indices: 826532--826598 Score: 73
Period size: 29 Copynumber: 2.3 Consensus size: 29
826522 CAACATATGA
826532 CCGTGTGGACCGCCCATGTGCGACACATGC
1 CCGTGTGGACCG-CCATGTGCGACACATGC
* * *
826562 CCATGTGGACCG-CAGTGTGCGGCACTTGC
1 CCGTGTGGACCGCCA-TGTGCGACACATGC
*
826591 CTGTGTGG
1 CCGTGTGG
826599 TCCAAACACC
Statistics
Matches: 31, Mismatches: 5, Indels: 3
0.79 0.13 0.08
Matches are distributed among these distances:
28 2 0.06
29 18 0.58
30 11 0.35
ACGTcount: A:0.13, C:0.31, G:0.34, T:0.21
Consensus pattern (29 bp):
CCGTGTGGACCGCCATGTGCGACACATGC
Found at i:827731 original size:19 final size:19
Alignment explanation
Indices: 827709--827756 Score: 78
Period size: 19 Copynumber: 2.5 Consensus size: 19
827699 TACAAAAAAG
827709 ATTCAAAATAATTTTCAAA
1 ATTCAAAATAATTTTCAAA
* *
827728 ATTCAAAATAATTTTTAAG
1 ATTCAAAATAATTTTCAAA
827747 ATTCAAAATA
1 ATTCAAAATA
827757 TTTATAAAAA
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
19 27 1.00
ACGTcount: A:0.52, C:0.08, G:0.02, T:0.38
Consensus pattern (19 bp):
ATTCAAAATAATTTTCAAA
Found at i:828057 original size:23 final size:23
Alignment explanation
Indices: 828013--828059 Score: 58
Period size: 23 Copynumber: 2.0 Consensus size: 23
828003 TGTAACAAGA
* ***
828013 CTTTAATTTGACATGTTTAATTT
1 CTTTAATTTGACACGAACAATTT
828036 CTTTAATTTGACACGAACAATTT
1 CTTTAATTTGACACGAACAATTT
828059 C
1 C
828060 ACTTGATTTG
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
23 20 1.00
ACGTcount: A:0.30, C:0.15, G:0.09, T:0.47
Consensus pattern (23 bp):
CTTTAATTTGACACGAACAATTT
Found at i:828332 original size:58 final size:58
Alignment explanation
Indices: 828221--828357 Score: 152
Period size: 58 Copynumber: 2.4 Consensus size: 58
828211 TAATGATTAT
* * * *
828221 AAGCCATCATTACAAGGTAACCCGAGGAGGTAGAAGGAACAGAACTGACAGATAGAAA
1 AAGCCATCATTGCAAGGCAACCCGAGGAGGTAGAAGAAACAGAACTAACAGATAGAAA
* * * * *
828279 AAGTCATCATTGCAAGGCAACCTGAGGTGGTAGAATAAACA-ATACTAATAGATAGAAA
1 AAGCCATCATTGCAAGGCAACCCGAGGAGGTAGAAGAAACAGA-ACTAACAGATAGAAA
*
828337 AAGCCATCGTTGTCAA-GCAAC
1 AAGCCATCATTG-CAAGGCAAC
828358 TCAGGGTGAC
Statistics
Matches: 66, Mismatches: 11, Indels: 4
0.81 0.14 0.05
Matches are distributed among these distances:
57 1 0.02
58 62 0.94
59 3 0.05
ACGTcount: A:0.43, C:0.18, G:0.23, T:0.17
Consensus pattern (58 bp):
AAGCCATCATTGCAAGGCAACCCGAGGAGGTAGAAGAAACAGAACTAACAGATAGAAA
Found at i:831114 original size:64 final size:64
Alignment explanation
Indices: 831013--831142 Score: 233
Period size: 64 Copynumber: 2.0 Consensus size: 64
831003 AAAGAAGCTT
*
831013 CAGTGGGAAAAGTGACACAGTTTAAGGCCAAAGTGAGCAGGAACCGGAAATTAAATTCTTTCTC
1 CAGTGGGAAAAGTGACACAGTTGAAGGCCAAAGTGAGCAGGAACCGGAAATTAAATTCTTTCTC
* *
831077 CAGTGGGAAAAGTGATACAGTTGAAGGCCAAAGTGAGCATGAACCGGAAATTAAATTCTTTCTC
1 CAGTGGGAAAAGTGACACAGTTGAAGGCCAAAGTGAGCAGGAACCGGAAATTAAATTCTTTCTC
831141 CA
1 CA
831143 AACCCCTCGT
Statistics
Matches: 63, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
64 63 1.00
ACGTcount: A:0.36, C:0.17, G:0.25, T:0.22
Consensus pattern (64 bp):
CAGTGGGAAAAGTGACACAGTTGAAGGCCAAAGTGAGCAGGAACCGGAAATTAAATTCTTTCTC
Found at i:832054 original size:12 final size:12
Alignment explanation
Indices: 832037--832063 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
832027 CATTCCTTGT
832037 TTTAAAATATAG
1 TTTAAAATATAG
832049 TTTAAAATATAG
1 TTTAAAATATAG
832061 TTT
1 TTT
832064 TTTAATTAGA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.44, C:0.00, G:0.07, T:0.48
Consensus pattern (12 bp):
TTTAAAATATAG
Found at i:836382 original size:6 final size:6
Alignment explanation
Indices: 836373--836397 Score: 50
Period size: 6 Copynumber: 4.2 Consensus size: 6
836363 CACCCTGTCT
836373 CTCTCC CTCTCC CTCTCC CTCTCC C
1 CTCTCC CTCTCC CTCTCC CTCTCC C
836398 CAACCCCCAC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 19 1.00
ACGTcount: A:0.00, C:0.68, G:0.00, T:0.32
Consensus pattern (6 bp):
CTCTCC
Found at i:837787 original size:216 final size:215
Alignment explanation
Indices: 836939--847126 Score: 8844
Period size: 215 Copynumber: 47.3 Consensus size: 215
836929 ATGGTATGTA
* ** *
836939 GTTTCCCTCTTGGTTCTTGGACGAACTTTCGAA-TTGGTCAAACAATTAC-ATGTTCTTTCATAA
1 GTTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTT-GTCAAACTTTTACGA-GTTCTTTTATAA
* * * * * * *
837002 CTTCGATTTCTTAAAGTATTCAAGATGATCCATTCCTTCAAACAATTTTTTGAACATTCCATTCT
64 CTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTCTGAACATTCCATGCT
* * * * * *
837067 CGGGAAATAGTAGCATTTAGTCTAAATAGTTTGTCATTTTGGAAACAAGTTTTGGTCTTTGAATC
129 CGGGAAATCGCATCATTTGGTCTAAATAGTTT-TCATTTTGTAAACAAGTTTTGGTCTTTGAATT
837132 AAAAACTTATTTACGTGAGAATT
193 AAAAACTTATTTACGTGAGAATT
* *
837155 -CTT-TCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACT
1 GTTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACT
* * * * * * ** * *
837218 TCCGTTCCTTACAA-CATTCAAGATGATACATTCCTTCGAGCAACTTCCAAAAAATTCTATGCTC
66 TCGGTTCCTTA-AAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTCTGAACATTCCATGCTC
* * * *
837282 -GGATAATCGCATCATTT-TTCTAAATTGTTTGTCATTTTGCAAACAAGTTTTGCTCTTTGAATT
130 GGGA-AATCGCATCATTTGGTCTAAATAGTTT-TCATTTTGTAAACAAGTTTTGGTCTTTGAATT
*
837345 AAATACTTATTTACGTGAGAATT
193 AAAAACTTATTTACGTGAGAATT
* * * *
837368 GTTTCTCT-TCTGGTTCTTGGACGAACTTCCAAACTTGACAAACTTTTACGAGTTCTTTTATAAT
1 GTTTCTCTCT-TGGTTCTTGGACGAACTTTCGAACTTGTCAAACTTTTACGAGTTCTTTTATAAC
* *
837432 TTCAGTTCCATAAAGTATTCAAGAC-ATCCATTCCTTCGAGCAATTTTCTGAACATTCCATGCTC
65 TTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTCTGAACATTCCATGCTC
** * * *
837496 GAAAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAAAAAGTTTTGTTGTTTGAATTA
130 GGGAAATCGCATCATTTGGTCTAAATAGTTT-TCATTTTGTAAACAAGTTTTGGTCTTTGAATTA
* *
837561 ACAACTTATTTACATGAGAATT
194 AAAACTTATTTACGTGAGAATT
* * * *
837583 GTTTCTCTCTTGGTTCTTGGAAGAACTTTCGAACTTGTCAAACTTTTATGAGTTCTTTCACAACT
1 GTTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACT
* * *
837648 TCAGTTCCTTAAAGCATTCAAGACGATCCATTCCTTCGAGCAATTTTCTGAACATTCCATTCTCG
66 TCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTCTGAACATTCCATGCTCG
* * * * ** * * * *
837713 AGAGATAGCAGCATTAAGTCTAAATTGTTCTTCATTTTGGAAACAAGTTTTAGTCTTTGAATCAA
131 GGAAATCGCATCATTTGGTCTAAATAGTT-TTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAA
*
837778 AAACTTATTTACGTGAGAAAT
195 AAACTTATTTACGTGAGAATT
* *
837799 G-TTC-CTCTTAGTTCTTGGACGAACTTCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACT
1 GTTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACT
* * * * *
837862 TCGGTTCCTTACATTATTCAAGAAGATACATTCCTTCGAGCAATTTTCTGAACATTCCATTCTCG
66 TCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTCTGAACATTCCATGCTCG
* * * * * * * * *
837927 AGAGATAGCAGCATTTAGTCTAAATAGTTCTTTATTTTGGAAACAAGTTTTAGTCTTTGAATCAA
131 GGAAATCGCATCATTTGGTCTAAATAGTT-TTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAA
*
837992 AAACTTATTTATGTGAGAATT
195 AAACTTATTTACGTGAGAATT
* * *
838013 G-TT-TCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAACTTTTACCAGTTCTTTTATAACT
1 GTTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACT
* * * *
838076 TCGGTTCCTTATATTATTCAAGACGATCCATTCCTTCGAGCATTTTTCTGAACATTACATGC-CT
66 TCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTCTGAACATTCCATGCTC-
* * * * * * *
838140 GGTAAATGGCATCATTTGGTATAAATAGTATGTCATTTTGTAAAATAACTTTTGGTCTTTGGATT
130 GGGAAATCGCATCATTTGGTCTAAATAGT-TTTCATTTTGT-AAACAAGTTTTGGTCTTTGAATT
* * *
838205 AAACACTTA-TTACATGAGAAAT
193 AAAAACTTATTTACGTGAGAATT
* * *
838227 GTTTCTCTCTTGGTTCTTTGATGAACTTTCGAACTTGTCAAACTTTTACGACTTCTTTTATAA-T
1 GTTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACT
* * **
838291 TCCAGTTCCATAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTCCAAACATTCCATGCTC
66 T-CGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTCTGAACATTCCATGCTC
* * * * *
838356 GGGAAATCGCATCACTTGGTCTAAATAGTTTGTCATTTTGTAAAAAAGTTTTGTTGTTTTAATTA
130 GGGAAATCGCATCATTTGGTCTAAATAGTTT-TCATTTTGTAAACAAGTTTTGGTCTTTGAATTA
838421 AAAACTTATTTACGTGAGAATT
194 AAAACTTATTTACGTGAGAATT
* * *
838443 GTTTCTCTCTTGGTTCTTGGAAGAACTTTCGAACTTGTTAAACTTTTACGAGTTCTTTCATAACT
1 GTTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACT
* * * *
838508 TCGGTTCCTTCAAGTATTCAAGACGATCCATTCCATT-GAGAAATTTT-TAAACATTCCATTCTC
66 TCGGTTCCTTAAAGTATTCAAGACGATCCATTCC-TTCGAGCAATTTTCTGAACATTCCATGCTC
* * * * * ***
838571 GGGAAATCGCA-CATTTAGTCTAAATAGTTTTTCATTCTGTAATCAAGTTTTGGTATTTAAAACG
130 GGGAAATCGCATCATTTGGTCTAAATAG-TTTTCATTTTGTAAACAAGTTTTGGTCTTTGAATTA
*
838635 AAAACTTATTTACGTGAAAATT
194 AAAACTTATTTACGTGAGAATT
* * * * *
838657 G-TT-TCTCTTGGCTCTTGGATGAACTTTCGAACTTTTTAAACTTTTACGAGTTCCTTTATAACT
1 GTTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACT
* * *
838720 T-GGTTCCTTACAGTATTAAAGACGATCCATTCCTTCGAGTAATTTT-TCGAACATTCCATGCTC
66 TCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTCT-GAACATTCCATGCTC
* * * ** *
838783 GAGAAATCGCATCTTTTGGTCTAAATAGCTTGTCATTTTGTAAACAACATTTGTTCTTTGAA-TA
130 GGGAAATCGCATCATTTGGTCTAAATAG-TTTTCATTTTGTAAACAAGTTTTGGTCTTTGAATTA
*
838847 AAACACTTATTTACGTGAGGATT
194 AAA-ACTTATTTACGTGAGAATT
* * * * * * * *
838870 -ATTCTCCCTTGGTTCTTTGACAAACTTTTGAACTAGTCAAACTTTTACGAGTTTTTTTACAACT
1 GTTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACT
* * * * **
838934 TCGGTTCCTTAAAGTATTCAAGACAATTCACTCATTCGAGCAATTTT-TCGAACATTCCATTTTC
66 TCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTCT-GAACATTCCATGCTC
* * * * *
838998 GAGAAATCGCTTCATTTGGTATAAATAGTTTGTCATTTTGTAAACAAGTTTTTGTGTTTGAATTA
130 GGGAAATCGCATCATTTGGTCTAAATAGTTT-TCATTTTGTAAACAAGTTTTGGTCTTTGAATT-
* * **
839063 AAAGAACTTTTTTACATGAGAAAC
193 AAA-AACTTATTTACGTGAGAATT
* * * * * * *
839087 GTTTCTCTATTGGTGCTTGGACGAACTTCCGAACTTGTTAAACTTTAACGAATTCTTTTATAATT
1 GTTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACT
* * * ** *
839152 TCAGTTCCATAAAGTATTCAAGAC-ATCCAATCCTTCGAGCAATTTTCCAAACATTCCATGCTTG
66 TCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTCTGAACATTCCATGCTCG
** ** *
839216 GGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAA-ATTTTTTTTTTCTTTGAACTA
131 GGAAATCGCATCATTTGGTCTAAATAGTTT-TCATTTTGTAAACA-AGTTTTGGTCTTTGAATTA
*
839280 AAAACTTATTTACGTAAGGAA--
194 AAAACTTATTTACGTGA-GAATT
*** * * * * ** * * * * * **
839301 ------C-CGAAGTT-ATGAAAGAACTCGTAAAAGTT-TGACAAGTTTGA-AAGTTCTTCCAATA
1 GTTTCTCTCTTGGTTCTTGGACGAACT-TTCGAACTTGTCA-AACTTTTACGAGTTCTT-TTATA
* ****** * *************************
839356 AC--CAAGAGAGAAACAATTA-TCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
63 ACTTC-GGTTCCTTA-AAGTATTCA---------------AGACGATCCATTCCTTCGAGCAATT
********************** * * * * *
839418 NNNNNNNNNNNNNNNNNNNNNNATCCAATCCTTCGAGCAATTT--TCCAAACA--TTCCATGCTT
111 TTCTGAACATTCCATGCTCGGGA---AAT-C-GC-ATC-ATTTGGTCTAAATAGTTTTCAT--TT
* * * * ***** * * * *
839479 GGGAAATCGCA-TCATTTGGTC--T-AAATAGTTTGTCATTT-TGTAAAAAAGTT
167 TGTAAA-C-AAGT--TTTGGTCTTTGAATTAAAAACTTATTTACGT-GAGAA-TT
* * * ** *** ** * *** * *
839529 TTTTTTCTCTTTGAACTAAAAACTTA-TTTACGTGATAATTGTTTCTCTCTTGGTTATTGGAAGA
1 GTTTCTCTCTTGGTTCT-TGGACGAACTTT-C--GA-ACTTG--TCAAACTT--TTA--CG-AGT
* * * * * ** **
839593 ACTTTCA-AACTT--G-TCAAACTTTTACGAGTTCTTTCATA-AC-TTCGGTTCCTTAAAGC-A-
54 TCTTTTATAACTTCGGTTC---C--TTA-AAG-T-ATTCA-AGACGATCCATTCCTTCGAGCAAT
* * * * **
839650 -TTC-AAGACGA-TCCATTCCTTCGAGCAATTTTCTGAACATTCTATTCTCGGGAGATAGCAGCA
110 TTTCTGA-AC-ATTCCA-TGC-TCG-GGAA--ATC-G--CA-TC-ATT-T--GG-TCTA--A--A
* * * *
839712 TTTGGTCTAAATAGTTC-TTCATTTTGAAAACAAGTTTTGGTCTTTGAATAAAAAATTTATTTAC
155 --TAG--T---T--TTCATT--TTGT-AA-ACAAGTTTTGGTCTTTGAATTAAAAACTTATTTAC
839776 GTGAGAATT
207 GTGAGAATT
* *
839785 G-TT-TCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAACTTTTACGAGTTCTTTTATAACT
1 GTTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACT
* * * * *
839848 TCGGTTCCTTAAATTATTCAAGACGATTCATTCATTCGAGCATTTTTCTGAACATTACATGCTCG
66 TCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTCTGAACATTCCATGCTCG
* * * * * *
839913 GGAAAT-GACATCATTTGGTATAAATAATGTGTCATTTTGTAAAAAAAACTTTTGGTCTTTGGAT
131 GGAAATCG-CATCATTTGGTCTAAATAGT-TTTCATTTTGT--AAACAAGTTTTGGTCTTTGAAT
*
839977 TAAACACTTA-TTACGTGAGAATT
192 TAAAAACTTATTTACGTGAGAATT
* * * *
840000 GTTTCTCTCTTGGCTCTTTGACGAACTTCCGAACTTTTCAAACTTTT-CGAGTTCTTTTATAACT
1 GTTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACT
* * * * *
840064 TCGATTTCTTAGAGTATTCATGACTATCCATTCCTTCGAGCAATTTT-TCGAACATTCCATGCTC
66 TCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTCT-GAACATTCCATGCTC
* * * * *
840128 TGGAAATCGCATCATTTTGTCTAAATAGTTTGTCATTTTGTAAAAAAGTTTTGTTGTTTGAATTA
130 GGGAAATCGCATCATTTGGTCTAAATAGTTT-TCATTTTGTAAACAAGTTTTGGTCTTTGAATTA
*
840193 AAAACTTATTTACGTGATAATT
194 AAAACTTATTTACGTGAGAATT
* * * * * * *
840215 GTTTCTCTCTTGGTTCTTTGATGAACTTTCAAACTGGTCAAATTTTTACAAGTTCTTTCATAACT
1 GTTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACT
* ** * * *
840280 TTGGTTCCTTAAAGCGTTCAAGACGATCCATTCCTTTGAGCAATTTTCTGAACATTCCATTCTCT
66 TCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTCTGAACATTCCATGCTCG
* * * * * *
840345 GGAGATAC-TAGCTTTTGGTCTAACTAGTTCTTCATTTTAG-AAACAAGTTTTGGTCTTTGAATC
131 GGAAAT-CGCATCATTTGGTCTAAATAGTT-TTCATTTT-GTAAACAAGTTTTGGTCTTTGAATT
* *
840408 AAAAATTTTTTTACGTGAGAATT
193 AAAAACTTATTTACGTGAGAATT
* * * *
840431 GTTTATCT-TT-GTTCTTGAACGAACTTTCGAACTTGTTAAACTTTTATGAGTTCTTTTATAACT
1 GTTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACT
* * * * * * * *
840494 TTGGTTCCTTACATTACTCAAGACGATCTATTCCTTCGAGCAATTTTCTAAACATTACATGCTTG
66 TCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTCTGAACATTCCATGCTCG
** * * * * * *
840559 GGAAATTACATCATTTGG-CATAAATAGCGTGTCATTTTGTAAAAAAAACTTTTGCTCTTTGGAT
131 GGAAATCGCATCATTTGGTC-TAAATAG-TTTTCATTTTGT--AAACAAGTTTTGGTCTTTGAAT
840623 T--AAACTTA-TTACGTGAGAATT
192 TAAAAACTTATTTACGTGAGAATT
* * * *
840644 GTTTCTCTCTTGGTTCTTTGACGAAC-TTCTGAACTTTTCAAACTTTTACGAGTTCTTTTACAAA
1 GTTTCTCTCTTGGTTCTTGGACGAACTTTC-GAACTTGTCAAACTTTTACGAGTTCTTTTATAAC
* * * * * * * * *
840708 TTCAGTTTCTTAGAGTATTCAAAATGATTCTTTCCTTCGAGCAATTTT-TCAAACATTTCATGCT
65 TTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTCT-GAACATTCCATGCT
* * * * *
840772 CGGGAAATCGCATCATTTAGTCTAAATAGTTGGTAAATTTGTAAACAACTTTTGGTCTTTGAATT
129 CGGGAAATCGCATCATTTGGTCTAAATAGTT-TTCATTTTGTAAACAAGTTTTGGTCTTTGAATT
* * *
840837 AAATAGTTATTTGCGTGAGAA-T
193 AAAAACTTATTTACGTGAGAATT
* * *
840859 GTTTCTCT-TTCGGTTCTTGGATGAACTTTCGAACTTCTCAAACTTTTACGAGTTCTTTTATAAT
1 GTTTCTCTCTT-GGTTCTTGGACGAACTTTCGAACTTGTCAAACTTTTACGAGTTCTTTTATAAC
* * * * * * *
840923 TTCGGTTCCATAAAGTATTAAAGACGATCCATTCGTTTGAGCAATTTTTTGAAAATTTCATGCTC
65 TTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTCTGAACATTCCATGCTC
* * * * * * * *
840988 GAGAAATTGCATCATTTAGTCTAAATAGTTTGTTATTTTGTAAAAAAGTTTCGTTGTTTGAATTA
130 GGGAAATCGCATCATTTGGTCTAAATAGTTT-TCATTTTGTAAACAAGTTTTGGTCTTTGAATTA
841053 AAAACTTATTTACGTGAGAATT
194 AAAACTTATTTACGTGAGAATT
** * * * *
841075 GTTTCTCTCTTATTTCTTGGAAGAACTTTTGAACTTGTCAAACTTTTACAAGTTCTTTCATAACT
1 GTTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACT
* * * * * *
841140 TCGATTCCTTAAAGCATTCAAGACAATCCATTCCTTCTAGCAATTTTTTGAACATTCCATTCTCG
66 TCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTCTGAACATTCCATGCTCG
* * * * *
841205 AGAAATAC-CAGCATTTGGTCTAAATAGTTCTTCATTTTGGAAACAAGTTTTGGTCTTTAAATCA
131 GGAAAT-CGCATCATTTGGTCTAAATAGTT-TTCATTTTGTAAACAAGTTTTGGTCTTTGAATTA
*
841269 AAAACTTATTTATGT-AGGAATT
194 AAAACTTATTTACGTGA-GAATT
* *
841291 G-TT-TCTCTTGGTTCTTGGACGAACTTTCGAAATTGTCAAACTTTTACAAGTTCTTTTATAACT
1 GTTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACT
** * * * * * * * *
841354 TTAGTTCCTTACATTATTCAAGACGATCCATTCCTTCGAGCATTTTTTTGGACACTACATGATCG
66 TCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTCTGAACATTCCATGCTCG
* * * *
841419 GGAAA-CGACATCATTCGGTATAAATAGTATGTCATTTTGTAAA-AGACTTTTGGTCTTTGAATT
131 GGAAATCG-CATCATTTGGTCTAAATAGT-TTTCATTTTGTAAACA-AGTTTTGGTCTTTGAATT
*
841482 AAACACTTA-TTACGTGAGAATT
193 AAAAACTTATTTACGTGAGAATT
* * **
841504 GTTTCACTCTTGGTTCTTTGACGAAC-TTCTGAACTTGTCAATA-TTTTACGACATCTTTTATAA
1 GTTTCTCTCTTGGTTCTTGGACGAACTTTC-GAACTTGTCAA-ACTTTTACGAGTTCTTTTATAA
* * * * * **
841567 TTTCAGTTCCATAAATTATTCAAGACAATCCATTCCTTCGAGCAATTTTCCAAACATTCCATGCT
64 CTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTCTGAACATTCCATGCT
* * * **
841632 CGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAAAAAGATTTGTTGGTTGAATT
129 CGGGAAATCGCATCATTTGGTCTAAATAGTTT-TCATTTTGTAAACAAGTTTTGGTCTTTGAATT
841697 AAAAACTTATTTACGTGAGAATT
193 AAAAACTTATTTACGTGAGAATT
* * * * *
841720 GTTTCTCTCTTGGTTTTTGGATGAACTTTCAAACTGGTCAAACTTTTATGAGTT-TTTTCATAAC
1 GTTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAACTTTTACGAGTTCTTTT-ATAAC
* * * * *
841784 TCCGGTTCCTTCAAGTATTCAAGACGATCCATTCCTTCAAGCAATTTTCTGAACATTCCGTTCTC
65 TTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTCTGAACATTCCATGCTC
* * * * *** *
841849 GGGAGATAGCAGCATTTGGTCTAAATAGTTCTTCATTTTGGAAACAAGTTTCCTTCTTTGAATCA
130 GGGAAATCGCATCATTTGGTCTAAATAGTT-TTCATTTTGTAAACAAGTTTTGGTCTTTGAATTA
*
841914 AAAAATTATTTACGTGAGAATT
194 AAAACTTATTTACGTGAGAATT
* *
841936 G-TT-TCTCTTGGTTTTTGGACGAAC-TTCTGAACTTGTCAAACTTTTATGAGTTCTTTTATAAC
1 GTTTCTCTCTTGGTTCTTGGACGAACTTTC-GAACTTGTCAAACTTTTACGAGTTCTTTTATAAC
* * * * * * *
841998 TTCGGTTCCTTACATTATTCAAGACGATTCATTCCTTTGAGCATTTTTCTAAACATTACATGCTC
65 TTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTCTGAACATTCCATGCTC
* * * * * *
842063 GGGAAATGGCATCATTTGGTATAAATAGTGTGTCATTTTGTAAAAAAAACTTTTGGTCTTTGGAT
130 GGGAAATCGCATCATTTGGTCTAAATAGT-TTTCATTTTGT--AAACAAGTTTTGGTCTTTGAAT
*
842128 TAAACACTTA-TTACGTGAGAATT
192 TAAAAACTTATTTACGTGAGAATT
* * *
842151 GTTTCTCTCTTGGTTCTTTGACGAAC-TTCTGAACTTTTCAAACTTTTACGAGTTCTTTTATATC
1 GTTTCTCTCTTGGTTCTTGGACGAACTTTC-GAACTTGTCAAACTTTTACGAGTTCTTTTATAAC
* * *
842215 TTCGGTTTCTTAGAGTATTCAAGATGATCCATTCCTTCGAGCAATTTT-TCGAACATTCCATGCT
65 TTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTCT-GAACATTCCATGCT
* * * * * *
842279 CGAGAAATCGCATCATTTGGTCTAAATAGTTTATTATTTTGCAAAGAAGTTTTGTTGTTTGAATT
129 CGGGAAATCGCATCATTTGGTCTAAATAGTTT-TCATTTTGTAAACAAGTTTTGGTCTTTGAATT
**
842344 AAAAACTTATTTATATGAGAATT
193 AAAAACTTATTTACGTGAGAATT
* * * *
842367 GTTTCTCTCTTGGTTCTTGGAAGAACTTTTGGACTTGTCAAACTTTTACGAGTTCTTTCATAACT
1 GTTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACT
* * * * *
842432 TTGGTTACTTAAAGCATTCAAGACGATCCATTCCTTCGAGCAATTTTCTGAACGTTCCATTCTCG
66 TCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTCTGAACATTCCATGCTCG
* * * * *
842497 GGAGATAGCAGCATTTGGTCTAAATAGTTCTTCATTTTGGAAACAAGTTTTGGTCTTTGAATCAA
131 GGAAATCGCATCATTTGGTCTAAATAGTT-TTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAA
*
842562 AAA-TTAATTCACGTGAGAATT
195 AAACTT-ATTTACGTGAGAATT
* * * *
842583 G-TT-TCTCTTGGTTCTTGGACGAAC-TTCTAAACTTGTCAGACTTTTACAAGTTCTTTTATAGC
1 GTTTCTCTCTTGGTTCTTGGACGAACTTTC-GAACTTGTCAAACTTTTACGAGTTCTTTTATAAC
* * * * * * * * *
842645 TTTGGTTCCTTACATTAGTCAAGACAATCCATTGCTTTGAGCAATTTTTTGAACATTCCATTCTC
65 TTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTCTGAACATTCCATGCTC
* * * ** * * * **
842710 GGGAAATAGAAACATTTCATCTAAATAGTTTGTCATTTTGGAAACAAGTTTTGCTCTTTAAATCG
130 GGGAAATCGCATCATTTGGTCTAAATAGTTT-TCATTTTGTAAACAAGTTTTGGTCTTTGAATTA
* * *
842775 AAAATTTATTTACGTAAGATTT
194 AAAACTTATTTACGTGAGAATT
* ** * *
842797 G-TT-TCTCTTGGTTGTTGGATAAACTTCCGAACTTGTCAAACATTTACGAGTTCTTTTATAACT
1 GTTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACT
* * * * * * *
842860 TCAGTTCCTTATAGTATTCAAGACGATACATTCCTTCCAGCAACTTTCTCAACATTCTATGCTCG
66 TCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTCTGAACATTCCATGCTCG
** * * * *
842925 AAAAATCGCATCATTT-TTCTAAATTGTTTGTCCTTTTGTAAATAAG-TTT-GTCTTTGAATTAA
131 GGAAATCGCATCATTTGGTCTAAATAGTTT-TCATTTTGTAAACAAGTTTTGGTCTTTGAATTAA
** *
842987 TTACTTATTTACGAGAGAATT
195 AAACTTATTTACGTGAGAATT
* * * * *
843008 GTTTCTGTCTCGGTTCTTGGACGAACTTCCAAACTTGTCAAACTTTTATGAGTTCTTTTATAACT
1 GTTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACT
* * * *
843073 TCGGTTCCTTAAAGTATTCAAGGCGATCTATTCCTTTGAGCAATTTT-TGAACATTCCATTCTCG
66 TCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTCTGAACATTCCATGCTCG
* * * * * * ***
843137 GGAAATCACATCATTTAGTCTAAATTGTTTTTTATTTTGTAAACAGGTTTTGGTCTTTAAAACGA
131 GGAAATCGCATCATTTGGTCTAAATAG-TTTTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAA
*
843202 AAACTTATTTGCGTGAGAATT
195 AAACTTATTTACGTGAGAATT
* * * *
843223 G-TT-TCTCTTGGCTCTTGGATGAACTTTCGAACTTTTCAATCTTTTACGAGTTCTTTTATAACT
1 GTTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACT
* * * * * * *
843286 T-GGTTCCTTACAGTATTAAAGATGATCCATTCCTTCGAGCAATTTTTTGAGCTTTCCATGCTCA
66 TCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTCTGAACATTCCATGCTCG
* * * *
843350 GGAAATCGCATCATTTGCTTTAAATAATTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAA
131 GGAAATCGCATCATTTGGTCTAAATAGTTT-TCATTTTGTAAACAAGTTTTGGTCTTTGAATTAA
**
843415 GCACTTATTTACGTGAGAATT
195 AAACTTATTTACGTGAGAATT
* * * * * * *
843436 GTTT-TCCTTTTAGTTCTTGGAAGAACATCCGAACTTCTCAAACTTTTACGAGTTCTTTTATAAT
1 GTTTCT-CTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAACTTTTACGAGTTCTTTTATAAC
* * * *
843500 TTCGGTTCCATAAAGTATTCAAGTCAATCCATTCCTTCGAGCAATTGTTC-GAAAATTCCATGCT
65 TTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATT-TTCTGAACATTCCATGCT
* *
843564 CGAGAAATCGCATCATTTGGTCTGAATAGTTTGTCATTTTGTAGAA-AA-TTTT--TC-TTG--T
129 CGGGAAATCGCATCATTTGGTCTAAATAGTTT-TCATTTTGTA-AACAAGTTTTGGTCTTTGAAT
** *
843622 T-TGAA-TTA---A----A-AACT
192 TAAAAACTTATTTACGTGAGAATT
* * * *
843636 -TTTCTCTCTTGTTTCTTGGAAGAAGTTTCGAACTTGTCAAACTTTTACAAGTTCTTTTATAACT
1 GTTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACT
* * * * * * *
843700 TCGGTTCCTTACATTATTCAAGACGATCCATTCATTCGAGCACTTTTCTGAACATTACAAGCTTG
66 TCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTCTGAACATTCCATGCTCG
* * * * * *
843765 GGAAATGGAATCATTTGGTATAAATAGTGTGTT-ATTTTGTAAAAAACTTTTGGTCTTTGGATTA
131 GGAAATCGCATCATTTGGTCTAAATAGT-T-TTCATTTTGTAAACAAGTTTTGGTCTTTGAATTA
*
843829 AACACTTA-TTACGTGAGAATT
194 AAAACTTATTTACGTGAGAATT
* * * *
843850 GTTTCTCTCTTGGTTCTTTGACGAACTTCCGAACTTGTCAAACTTTTACGACTTCTTTTATAATT
1 GTTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACT
* * * * * ** *
843915 TCAGTTCCGTAAAGTATTCAAGATGATCCATTCCTTTGAACAATTTTCAAAAAATTCCATGCTCG
66 TCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTCTGAACATTCCATGCTCG
* * * *
843980 AGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAAAAAGTTTTGTTGTTTGAATTAA
131 GGAAATCGCATCATTTGGTCTAAATAGTTT-TCATTTTGTAAACAAGTTTTGGTCTTTGAATTAA
844045 AAACTTATTTACGTGAGAATT
195 AAACTTATTTACGTGAGAATT
* * * * * *
844066 ATTTGTCTCTTGGTTCTTGGAAGAACTTTCGAACTTGTTAAACTTTTACGAGTTCTTTCATTACT
1 GTTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACT
* * * * * * *
844131 TCGGTGCCTTCAA-TATTCAATATGATCCATTCCTT-GTAGCAATTTTCTAAACATTACATGCTT
66 TCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCG-AGCAATTTTCTGAACATTCCATGCTC
* * * * * * * * *
844194 GGGAAATGGCATCATTCGATATAAAATA-TTGTGTAATCTTTTTAAA-TACTTTTGGTCTTTGGA
130 GGGAAATCGCATCATTTGGTCT-AAATAGTT-T-TCAT-TTTGTAAACAAGTTTTGGTCTTTGAA
*
844257 TTAAATACTTA-TTACGTGAGAATT
191 TTAAAAACTTATTTACGTGAGAATT
* * * *
844281 GTTTCTCTCTTAGTTCATT-GACGAACTTCCGAAGTTTTCAAACTTTTACGAGTTCTTTTATAAC
1 GTTTCTCTCTTGGTTC-TTGGACGAACTTTCGAACTTGTCAAACTTTTACGAGTTCTTTTATAAC
* * * *
844345 TTCGATTTCTTAGAGTATTCAAGACGATCCATTCCTTCGAGCAATTTT-TCAA-A---CAT--TC
65 TTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTCTGAACATTCCATGCTC
* * ** * * ** * * * *
844403 -CGAACTTTTCA-AACTT--T-T-ACGAG--TTC-TTTTAT-AAC-A---TCGGTTCCTTACAGC
130 GGGAA-ATCGCATCATTTGGTCTAAATAGTTTTCATTTTGTAAACAAGTTTTGG-T-CTT--TGA
* * * * * *
844454 ATTCAAGA-TGATACATTCCTTCAAGCAA--
190 ATTAAAAACT--TA-TTTACGT-GAG-AATT
* * *
844482 CTTTCTAAACAATCTAT-GTTCTTGGACGAACTTCCGAACTTGTCAAAATTTTACGAGTTCTTTT
1 GTTTCT---C--TCT-TGGTTCTTGGACGAACTTTCGAACTTGTCAAACTTTTACGAGTTCTTTT
* * * * ** **
844546 ATAATTTCTGTTCCATAAAGTATTCTAGACGATCCATTAGTAT-GAGCAATTTTCCAAACATTCC
60 ATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCT-TCGAGCAATTTTCTGAACATTCC
* * * *
844610 ATGCTTGGGAAATCACATCATTTGGTCTAAATAGTTTGCATTTTGTAAA-AAGGTTTTGTTGC-T
124 ATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTTCATTTTGTAAACAA-GTTTTGGT-CTT
* *
844673 TGGATTAAAAACTTATTTACGTGATAATT
187 TGAATTAAAAACTTATTTACGTGAGAATT
* * *
844702 GTTTCTCTCTTGGTTCTTGGATGAACTTTCGAACTTGTCAAAATTTTACGAGTTCTTTCATAACT
1 GTTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACT
* * * * *
844767 TCGATTCCTTAAAATATTCATGACGATCCATTCCTTCGAGCAATTTAT-TGATCATTCAATGCTC
66 TCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTT-TCTGAACATTCCATGCTC
* * *
844831 GGGAAATCACATCATTTGGTCTATATAGTTTTTCATTTTGTAAACAAGTTTTGGTCTTTGAATCA
130 GGGAAATCGCATCATTTGGTCTAAATAG-TTTTCATTTTGTAAACAAGTTTTGGTCTTTGAATTA
844896 AAAACTTATTTACGTGAGAATT
194 AAAACTTATTTACGTGAGAATT
*
844918 G-TT-TCTCTTGGTTCTTGGACGAAC-TTCTGAACTTGTCAAACTTTTACGAGTTCTTTTATAAT
1 GTTTCTCTCTTGGTTCTTGGACGAACTTTC-GAACTTGTCAAACTTTTACGAGTTCTTTTATAAC
* * * * * *
844980 TTCAGTTCCATAAAGTATTGATGACGATCCATTCTTTCGAGCAATTTTCTGAACATTCCATTCTC
65 TTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTCTGAACATTCCATGCTC
** * * * * * *
845045 -TTAAATCGCATCATTTGGTTTATATAGTTAGTCATTTTGTAAA-ATAGCTTTGTTGTTTGAATT
130 GGGAAATCGCATCATTTGGTCTAAATAGTT-TTCATTTTGTAAACA-AGTTTTGGTCTTTGAATT
** *
845108 AAAAACTTATTTATATAAGAATT
193 AAAAACTTATTTACGTGAGAATT
* * * * *
845131 GTTTCTTTTTTGGTTCTTGGACGAACTTTCGAACTTGTTAAACTTTTACGAGCTCTTTCATAACT
1 GTTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACT
* * * *
845196 TCGATTCCTTAAAGTATTTAAGACGATCCATTCCTTCGAGCAATTTTCTAAACATTCCATTCTCG
66 TCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTCTGAACATTCCATGCTCG
* *
845261 GGAAATAGCAAT-ATTTGGTCTAAATAGTTCTTCATTTTGGAAA-AACGTTTTGGTCTTTGAATT
131 GGAAATCGC-ATCATTTGGTCTAAATAGTT-TTCATTTTGTAAACAA-GTTTTGGTCTTTGAATT
* **
845324 AAAAACTTATTTACATTTGAATT
193 AAAAACTTATTTACGTGAGAATT
845347 G-TT-TCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACT
1 GTTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACT
* * * * * *
845410 TCGGTTCCATACATTATTTAAGACGATCCATTCCTTCGAGCAATTTTCTAAACATTACATGCTCG
66 TCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTCTGAACATTCCATGCTCG
* * * * * *
845475 AGAAATGGCATCATTTGGTATAAATAGTGTTTCATTTTGTAAAAAACTTTTGGTCTTTGGATTAA
131 GGAAATCGCATCATTTGGTCTAAATAGT-TTTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAA
* *
845540 ACACTTA-TTACGTGAGATTT
195 AAACTTATTTACGTGAGAATT
* ** * *
845560 GTTTCTCTCTTGGTTCTTTGATTAAC-TTCTGAACTTTTGAAACTTTTACGAGTTCTTTTATAAC
1 GTTTCTCTCTTGGTTCTTGGACGAACTTTC-GAACTTGTCAAACTTTTACGAGTTCTTTTATAAC
* * * *
845624 TTCGGTTTCTTAGAGCATTCAAGACGATCCATTCCTTCGAGCAATTTTTTGAACATTCCATGCTC
65 TTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTCTGAACATTCCATGCTC
* * *
845689 GAGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACTACTTTTGGTCTTTGAATTA
130 GGGAAATCGCATCATTTGGTCTAAATAGTTT-TCATTTTGTAAACAAGTTTTGGTCTTTGAATTA
*
845754 AACACTTATTTACGTGAGAATT
194 AAAACTTATTTACGTGAGAATT
* * * *
845776 GTTTCTCAT-TAGGTTCTTGGATGAACTTTCGAACTAGTCAAACTTTTACGAGTTCTTTCATAAC
1 GTTTCTC-TCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAACTTTTACGAGTTCTTTTATAAC
* * *
845840 TTCGGTTCCTTAAAGCATTCAAGACAATCCATTCCTTCGAGTAATTTT-TCGAACATTCCATGCT
65 TTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTCT-GAACATTCCATGCT
* * * * *
845904 CGGGAAATCGCATCATTTGGTCAAAATA-TTTTGTATTTTGTAAAAAACTTTTGGTCTTTGGATT
129 CGGGAAATCGCATCATTTGGTCTAAATAGTTTT-CATTTTGTAAACAAGTTTTGGTCTTTGAATT
* *
845968 --AAAC-T-TTT--GT-AAAATA
193 AAAAACTTATTTACGTGAGAATT
* * * *
845984 GTTTGTCTCTTGGTTCTTTGATGAACTTTCGAACTTTTCAAACTTTTACGAGTTCTTTTATAACT
1 GTTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACT
* * * * * * * * * * *
846049 TCGATTTCTTAAAATATTCATGACTATCCATTCCTTCGAGCAATTTTTTTATCATTCAATGATCA
66 TCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTCTGAACATTCCATGCTCG
* * *
846114 AGAATTCGCATCATTTGGTCTAAATAGTTTTTCATTTTGTAAACAAGTTTTGGTCTTTGAATCAA
131 GGAAATCGCATCATTTGGTCTAAATAG-TTTTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAA
*
846179 AAACTTATTTACGTGGGAATT
195 AAACTTATTTACGTGAGAATT
* * * *
846200 GTTTCTCT-TT-GTTCTTGGATGAACTTCCGAACTTTTCAAACTTTTACGAGTTCTTTTGTAACT
1 GTTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACT
* * * * * * * *
846263 TCGGCTACTTATAGTATTCAAGTCGATCCATTCCTTGGAGCAATTTTCTAAACATTACATGCTTG
66 TCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTCTGAACATTCCATGCTCG
* * * * * * *
846328 CGAAATGGCATCATTTGGTATAAAATAGTGTGTCATTTTGTAAAAAACTTTTGGTCTTTGGATTA
131 GGAAATCGCATCATTTGGTCT-AAATAGT-TTTCATTTTGTAAACAAGTTTTGGTCTTTGAATTA
*
846393 AACACTTA-TTACGTGAGAATT
194 AAAACTTATTTACGTGAGAATT
*
846414 ATTTCTCTCTTGGTTCTTTGG-CGAAC-TTCTGAACTT-TCAAACTTTTACGAGTTCTTTTATAA
1 GTTTCTCTCTTGGTTC-TTGGACGAACTTTC-GAACTTGTCAAACTTTTACGAGTTCTTTTATAA
* * * *
846476 CTTCGATTTCTTAGAGTATTCAAGACGATCCATTCCTTCGAGGAATTTT-TCGAACATTCCATGC
64 CTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTCT-GAACATTCCATGC
* * * * *
846540 TTGGGAAATTGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAAAAAGTTTTGTTGTTTGAAT
128 TCGGGAAATCGCATCATTTGGTCTAAATAGTTT-TCATTTTGTAAACAAGTTTTGGTCTTTGAAT
*
846605 TAAAAACTTATTTACGTAAGAATT
192 TAAAAACTTATTTACGTGAGAATT
* * * * * *
846629 GTTTCTCACTTGGTTCTTAGATGAACTTTCGAACTGGTCAAACTTTTACGAGTTCCTTCATAACT
1 GTTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACT
* * * ** *
846694 TCGGTTCCTTAAAGCATTCAAGACAATCCATTACTTCGAGCAATTTTCTGAACATTGTATTCTCG
66 TCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTCTGAACATTCCATGCTCG
* * * * * *
846759 GGAGATAGCAACATTTGGTCTAAATAGTTCTTCATTTTGAAAACAAGTTTTGGTCTTTAAATCAA
131 GGAAATCGCATCATTTGGTCTAAATAGTT-TTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAA
* *
846824 AAACCTATTTACTTGAGAATT
195 AAACTTATTTACGTGAGAATT
* * *
846845 -TTT-TCTCTGGGTTCTTGGACGAACTTCCGAACTTGTCAAACTTTTATGAGTTCTTTTATAACT
1 GTTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACT
* * * * * * * *
846908 TTGGTTCCTTACATTATTCAGGACGATCCATTCCTTCGAGCAATTTGCTAAACATTACATGCTAG
66 TCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTCTGAACATTCCATGCTCG
* * * * * * * *
846973 AGAAAT-GACATCATTCGATATAAATAGTGTGTCATTTTGTAAAAAACTTTTGGTCTTTGGATTA
131 GGAAATCG-CATCATTTGGTCTAAATAGT-TTTCATTTTGTAAACAAGTTTTGGTCTTTGAATTA
*
847037 AACACTTA-TTACGTGAGAATT
194 AAAACTTATTTACGTGAGAATT
* * * * *
847058 GTTTCTCTCTTTGTTCTTTGACGGACTTTCGAACTTGTCAAACTTTTACGAGTTATTTTGTAACT
1 GTTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACT
847123 TCGG
66 TCGG
847127 ATTTGAGCAA
Statistics
Matches: 8064, Mismatches: 1525, Indels: 767
0.78 0.15 0.07
Matches are distributed among these distances:
194 3 0.00
195 1 0.00
196 3 0.00
197 4 0.00
198 16 0.00
199 139 0.02
200 11 0.00
201 12 0.00
202 4 0.00
203 7 0.00
204 1 0.00
205 7 0.00
206 111 0.01
207 28 0.00
208 145 0.02
209 36 0.00
210 8 0.00
211 77 0.01
212 165 0.02
213 570 0.07
214 2016 0.25
215 2083 0.26
216 1927 0.24
217 334 0.04
218 79 0.01
219 2 0.00
220 11 0.00
221 8 0.00
222 11 0.00
223 2 0.00
224 4 0.00
225 12 0.00
226 20 0.00
227 10 0.00
228 2 0.00
229 12 0.00
230 2 0.00
232 2 0.00
233 5 0.00
234 5 0.00
235 12 0.00
236 3 0.00
237 3 0.00
238 3 0.00
239 9 0.00
240 13 0.00
241 7 0.00
242 7 0.00
243 18 0.00
244 9 0.00
245 4 0.00
246 5 0.00
247 7 0.00
248 8 0.00
249 1 0.00
250 4 0.00
251 4 0.00
253 5 0.00
254 19 0.00
255 5 0.00
256 9 0.00
257 12 0.00
258 2 0.00
ACGTcount: A:0.28, C:0.17, G:0.14, T:0.40
Consensus pattern (215 bp):
GTTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACT
TCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTCTGAACATTCCATGCTCG
GGAAATCGCATCATTTGGTCTAAATAGTTTTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAA
AACTTATTTACGTGAGAATT
Found at i:840181 original size:21 final size:21
Alignment explanation
Indices: 840139--840178 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
840129 GGAAATCGCA
* *
840139 TCATTTTGTCTAAATAGTTTG
1 TCATTTTGTCAAAAAAGTTTG
840160 TCATTTTGT-AAAAAAGTTT
1 TCATTTTGTCAAAAAAGTTT
840179 TGTTGTTTGA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 8 0.47
21 9 0.53
ACGTcount: A:0.30, C:0.07, G:0.12, T:0.50
Consensus pattern (21 bp):
TCATTTTGTCAAAAAAGTTTG
Found at i:844430 original size:93 final size:93
Alignment explanation
Indices: 844307--844481 Score: 269
Period size: 93 Copynumber: 1.9 Consensus size: 93
844297 ATTGACGAAC
* * * * *
844307 TTCCGAAGTTTTCAAACTTTTACGAGTTCTTTTATAACTTCGATTTCTTAGAGTATTCAAGACGA
1 TTCCGAACTTTTCAAACTTTTACGAGTTCTTTTATAACATCGATTCCTTACAGCATTCAAGACGA
* *
844372 TCCATTCCTTCGAGCAATTTTTCAAACA
66 TACATTCCTTCAAGCAATTTTTCAAACA
* *
844400 TTCCGAACTTTTCAAACTTTTACGAGTTCTTTTATAACATCGGTTCCTTACAGCATTCAAGATGA
1 TTCCGAACTTTTCAAACTTTTACGAGTTCTTTTATAACATCGATTCCTTACAGCATTCAAGACGA
844465 TACATTCCTTCAAGCAA
66 TACATTCCTTCAAGCAA
844482 CTTTCTAAAC
Statistics
Matches: 73, Mismatches: 9, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.29, C:0.22, G:0.11, T:0.38
Consensus pattern (93 bp):
TTCCGAACTTTTCAAACTTTTACGAGTTCTTTTATAACATCGATTCCTTACAGCATTCAAGACGA
TACATTCCTTCAAGCAATTTTTCAAACA
Found at i:848190 original size:216 final size:216
Alignment explanation
Indices: 847131--851005 Score: 2977
Period size: 214 Copynumber: 18.1 Consensus size: 216
847121 CTTCGGATTT
*
847131 GAGCAATTTTTCGAACATTCCATGCTCGAGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTT
1 GAGCAATTTTTCGAACATTCCATGCTTGAGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTT
** * ** * * * *
847196 TGTAAACTACTTTTGGAATTT---TT---TA-TT-TTTACGTGAGAATTGTTTCTTTTTTGGATC
66 TGTAAAAAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTC
* * * * *
847253 TTGGACTAACTTTCGAACTTGTTAAACATTTACGAGTTCTTTCATAACTTCGGTTCCTTAAAGCA
131 TTGGACGAACTTTCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTA
* *
847318 TTCAAGACAATCCATTCCTTAA
196 TTCAAGACGATCCATTCCTT-C
* * * * *
847340 GAGTAATTTTCCGAACATTCCATAC-TCAGGAAATCGCATCATTTGGTCAAAATAGTTTGT-ATT
1 GAGCAATTTTTCGAACATTCCATGCTTGA-GAAATCGCATCATTTGGTCTAAATAGTTTGTCATT
* * * * *
847403 TTGTAAAAAACTTTTGGTCTTTGGATT--AAAC-T-TTT--GT-AAAATAGTTTGTCTCTTGGTT
65 TTGTAAAAAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTT
* * * * * * * *
847461 CTTTGACGAGCTTCCGAACTTTTCAAACTTTTACGAGTTTTTTTATAACTTCGATTTCTTAAAAT
130 CTTGGACGAACTTTCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGT
*
847526 ATTCATGACGATCCATTCCTTC
195 ATTCAAGACGATCCATTCCTTC
** * * * ** * *
847548 GAGCAATTTTTTTATCATTCAATGATCAAGAATTCGCATCATTTGGTCTAAATAGTTTTTCATTT
1 GAGCAATTTTTCGAACATTCCATGCTTGAGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTT
* * *
847613 TGTAAACAAGTTTTGGTCTTTGAATCAAAAACTTATTTACGTGGGAATTGTTTCTCT-TT-GTTC
66 TGTAAAAAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTC
* * * * *
847676 TTGGATGAACTTCCGAACTTTTCAAACTTTTACGAGTTCTGTTATAACTTCGG---C-T-ACGTA
131 TTGGACGAACTTTCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTA
* *
847736 TTCAAGTCGATCCATTCCTTG
196 TTCAAGACGATCCATTCCTTC
* * * * * * * *
847757 GAG-AAATTTTCTAAACATTACATGCTAGGGAAATGGCATCATTTGGTATAAAATAGTGTGTCAT
1 GAGCAATTTTTC-GAACATTCCATGCTTGAGAAATCGCATCATTTGGTCT-AAATAGTTTGTCAT
* * *
847821 TTTGTAAAAAACTTTTGGTCTTTGGATTAAACACTTA-TTACGTGAGAATTGTTTCTCTCTTGGT
64 TTTGTAAAAAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGT
* * * * *
847885 TCTTTGACGAACTTCCGAACTT-TCAAACTTTTACGAGTTCTTTTATAACTTCGATTTCTTAGAG
129 TCTTGGACGAACTTTCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAG
*
847949 TATTCAAGACAATCCATTCCTTC
194 TATTCAAGACGATCCATTCCTTC
* *
847972 GAGCAATTTTTCGAACATTCCATGCTTGAAAAATTGCATCATTTGGTCTAAATAGTTTGTCATTT
1 GAGCAATTTTTCGAACATTCCATGCTTGAGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTT
* *
848037 TGTAAAAAAGTTTTGTTGTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTC
66 TGTAAAAAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTC
* * * * *
848102 TTGGATGAACTTTCGAACTGGTCAAACTTTTACGAGTTCCTTCATAACTTCGGTTCCTTAAAGCA
131 TTGGACGAACTTTCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTA
*
848167 TTCAAGACGATCCATTTCTTC
196 TTCAAGACGATCCATTCCTTC
** * * * * * * * *
848188 GAGCAA-TTTTCTGAACATTGTATTCTCGGGAGATAGCAACATTTGGTTTAAATAATTCT-TCAT
1 GAGCAATTTTTC-GAACATTCCATGCTTGAGAAATCGCATCATTTGGTCTAAATAGTT-TGTCAT
* *
848251 TTTG-AAAACAAGTTTTGGTCTTTGAATCAAAAACTTATTTACGTGGGAATTG-TT-TCTCTTGG
64 TTTGTAAAA-AAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGG
* * * * *
848313 TTCTTGGATGAACTTTCGAACTTTTCAAACTTTTACGAGTTCTTTTATAACTTCGGCTACTTACA
128 TTCTTGGACGAACTTTCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAA
* *
848378 GTATTCAAGTCGATCCATTCCTTG
193 GTATTCAAGACGATCCATTCCTTC
* * ** * * * *
848402 GAGCAA-TTTTCTAAACATTACATAATTGGGAAATGGCATCATTTGGTATAAAATAGTGTGTCAT
1 GAGCAATTTTTC-GAACATTCCATGCTTGAGAAATCGCATCATTTGGTCT-AAATAGTTTGTCAT
* * * * * *
848466 TTTATAAAAAAACTTTTGGTC-TTCAGATTAAACATTTA-TTACGTGAGAATTGTTTCTCTCCTG
64 TTTGT-AAAAAAGTTTTGGTCTTTGA-ATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTG
* * * * * *
848529 GTTCTTCGATGAACTTCCGAACTTTTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTTCTTAG
127 GTTCTTGGACGAACTTTCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAA
*
848594 AGCATTCAAGACGATCCATTCCTTC
192 AGTATTCAAGACGATCCATTCCTTC
* * *
848619 GAGCAATTTTTCGAACATTCCATGCTCGAGAAATCGCATCATTTGGCCTAAATAGTTTTTCA-TT
1 GAGCAATTTTTCGAACATTCCATGCTTGAGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTT
* * ** *
848683 TGTAAACAACTTTTGGAAT-TTTTTATTAAAAACTTATTTTCGTGAGAATTGTTTCTC-CTTTGG
66 TGTAAAAAAGTTTTGG--TCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTC-TTGG
* * * *
848746 TTCTTGGACTAACTTTCGAACTTGTCAAACTTTTACGAGTTCTTTCATAACTTCGATTCCTTAGA
128 TTCTTGGACGAACTTTCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAA
*
848811 GTATTCAAGACGATCCATTCCTTT
193 GTATTCAAGACGATCCATTCCTTC
* * * * * * *
848835 GACCAATTTTTTGAACATTCCATTC-TCAGGAAATAGCAGCATTTGGTCTAAATAGTTCT-TCTT
1 GAGCAATTTTTCGAACATTCCATGCTTGA-GAAATCGCATCATTTGGTCTAAATAGTT-TGTCAT
** * * * * * *
848898 TTTGGGAACAAGTTTTTGTCTTTGAATCAACAGCTTATTTACGTGAGACTTG-TT-TCTCTTGGT
64 TTTGTAAAAAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGT
* * * * * * * *
848961 TCTTGGACAAACTTCCGAACTTTTCAAACTTTTATGAGTTCTTTTATAACTTCGGCTACTTACAC
129 TCTTGGACGAACTTTCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAG
* *
849026 TATTCAAGACGATCCATTTCTTG
194 TATTCAAGACGATCCATTCCTTC
* * * * ** * *
849049 GAGCAA-TTTTCTAAACATTACATGCTT-AGGAAGTGGCATTGTTTGGTATAAAATAGTGTG-CT
1 GAGCAATTTTTC-GAACATTCCATGCTTGA-GAAATCGCATCATTTGGTCT-AAATAGTTTGTC-
* * * *
849111 ATTTTATAAAAAACTTTTGGTCTTTGGATTAAACACTTA-TTACGTGAGAATTGTTTCTCTCTTG
62 ATTTTGTAAAAAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTG
* * * * ** * *
849175 GTTCTTTGACGAACTTCCGAACTTTTCAAACTTTTACGTGTTCTTTTATAACTTCAATTTCTTAG
127 GTTCTTGGACGAACTTTCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAA
* *
849240 AGCATTCAAGATGATCCATTCCTTC
192 AGTATTCAAGACGATCCATTCCTTC
* * *
849265 GAGCAATTTTTC-AACATTTCATGCTCGAGAAATCGCATAATTTGGTCTAAATAGTTTGTCATTT
1 GAGCAATTTTTCGAACATTCCATGCTTGAGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTT
* * * * * * * *
849329 TGCAAACAACTTTTGGAATTTATTG--TTAAAAACTTATTTACATGATAATTGTTTCTTTTTTGG
66 TGTAAAAAAGTTTTGG--TCT-TTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGG
* * * **
849392 TTCTTGGACTAACTTTCGAACTTGTCAAACTTTTACGAGTTCTTTCATAACTTCGATTCCTTAGT
128 TTCTTGGACGAACTTTCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAA
** * *
849457 GTATTCAAGGTGAACCATTCCTTT
193 GTATTCAAGACGATCCATTCCTTC
* * *** * *
849481 GAGCAA-TTTTCTGAACATTCCATTCTCGAGAAATAATAGCATTTGGTCTAAATAGTTCT-TCTT
1 GAGCAATTTTTC-GAACATTCCATGCTTGAGAAATCGCATCATTTGGTCTAAATAGTT-TGTCAT
** * * * * *
849544 TTTGGGAACAAGTTTTTGTCTTTGAATCAACAACTTATTTACGTGAGAATTG-TT-TCTCTTGAT
64 TTTGTAAAAAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGT
* * *
849607 TCTTGGACGAACTTCCGAACTTTTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTACAG
129 TCTTGGACGAACTTTCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAG
* * *
849672 TATTCAAGATGATCAATTCCTTG
194 TATTCAAGACGATCCATTCCTTC
* * * * * * *
849695 GAGCAA-TTTTCTAGACATTACATGCTTGGGAAATGGCGTCATTTGGTATAAAATAGTGTGTCAT
1 GAGCAATTTTTCGA-ACATTCCATGCTTGAGAAATCGCATCATTTGGTCT-AAATAGTTTGTCAT
* *** * * * *
849759 ATTGTAAAATTCTTTTGGTCTTTGGATTAAACACTTA-TTACGTGAGAATTATTTCTCTCTTAGT
64 TTTGTAAAAAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGT
* * * * *
849823 CCTTGGACGAACTTTTGAA-TTGCTCAAACTTTTACGAGTTGTTTCATAAATTCGGTTTCCATT-
129 TCTTGGACGAACTTTCGAACTTG-TCAAACTTTTACGAGTTCTTTTATAACTTCGG-TTCC-TTA
** * * *
849886 ---CCTTC--GA-G--CAATT-TTTA
191 AAGTATTCAAGACGATCCATTCCTTC
* * ** * **
849903 GAACATTCTATTCTCGGGAA-ATAGCA-GCATTTG-GTCTAAATAGTTTGTCATTTAGG---AAA
1 GAGCAAT-T-TT-TC--GAACATTCCATGC--TTGAG---AAATCG--CATCATTT-GGTCTAAA
* * * ** * ** ***** ** *
849962 CAAGTTTTGGTC--TTTGAATCAAAAACTTATTTATGTGAGAATTGTTTCTCTTGGTT-CTTGGA
53 -TAG-TTT-GTCATTTTG--TAAAAAAGTT-TTGGTCTTTGAATT-AAAAACTTATTTACGT-GA
* * * ** * * * * * *
850024 CGAACTTCCGAACTTCTCAAACTTTTAAGTTCTTTTA-TAAC-TTC--AGTTCCTTACACTATT-
110 -GAA-TT--G---TT-TC--TCTCTT-GGTTCTTGGACGAACTTTCGAACTT-GTCAAACTTTTA
* * * * ** * * * **
850084 CAAG-ACGATTCATTCCTTCGGTTCCTTACAGTATTAAAGATGATTTATTCCTTC
163 CGAGTTC-TTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTC
* * * ** * ** *
850138 GAGCAACTTTCCAAACATTCTGTGCTTG-GAAAATCGCATCATTT-TTCT-AATTTTTTGTAATT
1 GAGCAATTTTTCGAACATTCCATGCTTGAG-AAATCGCATCATTTGGTCTAAATAGTTTGTCATT
* * * * * *
850200 TTGTAAACAAGTTTTGGTCTTTGAATTAAATACATAATTACGTGATAATTGTTTCTCTTTTGGTT
65 TTGTAAAAAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTT
* * * * *
850265 CTTGGATGAACTTCCAAACTTGTCAAACTTTTACGAGTT-TTTTAATAA-TTCCAGTTCCATAAA
130 CTTGGACGAACTTTCGAACTTGTCAAACTTTTACGAGTTCTTTT-ATAACTT-CGGTTCCTTAAA
** * *
850328 GTATTGTAGACAATCCATT-CTAC
193 GTATTCAAGACGATCCATTCCTTC
* * * * * *
850351 GAACAA-TTTTCTGAACCTTCCATTCTCCG-GAAATCGCATCATTTGGTTTATATAGTTTGTCAT
1 GAGCAATTTTTC-GAACATTCCATGCT-TGAGAAATCGCATCATTTGGTCTAAATAGTTTGTCAT
* * * * * * *
850414 TTTGTAAAATAGTTTTGTTGTTTGAATTAAGAACTTATTTACGTAAGAATTGTTTCTCTATTAGT
64 TTTGTAAAAAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGT
* * * * **
850479 TCTTGGATGAACTTTCGAACTTGTCAAACTTTTACTAGCTCTTTCATAACTTCAATTCCTTAAAG
129 TCTTGGACGAACTTTCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAG
*
850544 TGTTCAAGACGATCCATTCCTTC
194 TATTCAAGACGATCCATTCCTTC
* * * * *
850567 AAGTAA-TTTTCTGAACATTCCATTC-TCACGAAATAGCAGT-ATTTGGTCTAAATAGTTCT-TC
1 GAGCAATTTTTC-GAACATTCCATGCTTGA-GAAATCGCA-TCATTTGGTCTAAATAGTT-TGTC
* * * * * **
850628 ATTTTGGAAAAAAGTTTTGGTCTTTAAATAAAAAACTTAATTACTTTTGAATTGTTTCT-T-TTG
62 ATTTTGTAAAAAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTG
* * * * * *
850691 GTTTTTGGAC-AAGGTTCCCAACATGTCAAACTTTTACGAGTTCCTTTATAACTTCGGTTCCTTA
127 GTTCTTGGACGAA-CTTTCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTA
* * *
850755 CATTATTCAAGACGATCCATTCCTTT
191 AAGTATTCAAGACGATCCATTCCTTC
* * * * *
850781 GAGCAA-TTTTCTAAACATTACATGCTCGAGAAAT-GACTTCATTTGGTATAAATAG--TGTCAT
1 GAGCAATTTTTC-GAACATTCCATGCTTGAGAAATCG-CATCATTTGGTCTAAATAGTTTGTCAT
* * *
850842 TTTGTAAAAAAACTTTTGGTCTTTGGATTAAACACTTATTGT--GTGAGAATTGTTTCTCTCTTG
64 TTTGT-AAAAAAGTTTTGGTCTTTGAATTAAAAACTTATT-TACGTGAGAATTGTTTCTCTCTTG
* * * ** * *
850905 GTTCTTTGACGAACTTTCGAACTTTTCAAACTTTTACGAGTTTTTTTATAACTTCAATTTCTTAG
127 GTTCTTGGACGAACTTTCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAA
*
850970 AGTATTTAAGACGATCCATTCCTTC
192 AGTATTCAAGACGATCCATTCCTTC
850995 GAGCAATTTTT
1 GAGCAATTTTT
851006 AAAATATTCC
Statistics
Matches: 2907, Mismatches: 599, Indels: 314
0.76 0.16 0.08
Matches are distributed among these distances:
208 79 0.03
209 240 0.08
210 87 0.03
211 43 0.01
212 41 0.01
213 90 0.03
214 763 0.26
215 431 0.15
216 745 0.26
217 228 0.08
218 18 0.01
219 8 0.00
220 6 0.00
221 9 0.00
222 13 0.00
223 9 0.00
224 3 0.00
225 6 0.00
226 12 0.00
227 16 0.01
228 16 0.01
229 4 0.00
230 13 0.00
231 11 0.00
232 4 0.00
233 2 0.00
234 4 0.00
235 6 0.00
ACGTcount: A:0.27, C:0.17, G:0.15, T:0.41
Consensus pattern (216 bp):
GAGCAATTTTTCGAACATTCCATGCTTGAGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTT
TGTAAAAAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTC
TTGGACGAACTTTCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTA
TTCAAGACGATCCATTCCTTC
Found at i:849436 original size:646 final size:645
Alignment explanation
Indices: 847224--852047 Score: 4109
Period size: 646 Copynumber: 7.5 Consensus size: 645
847214 TTTTTTATTT
* * * * * *
847224 TTACGTGAGAATTGTTTCTTTTTTGGATCTTGGACTAACTTTCGAACTTGTT-AAACATTTACGA
1 TTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTT-TTCAAACTTTTACGA
* * * * * * *
847288 GTTCTTTCATAACTTCGGTTCCTTAAAGCATTCAAGACAATCCATTCCTTAAGAGTAATTTTCCG
65 GTTCTTTTATAACTTCGATTTCTTAGAGCATTCAAGACAATCCATTCCTT-CGAGCAATTTTTCG
* * *
847353 AACATTCCATACTC-AGGAAATCGCATCATTTGGTCAAAATAGTTTGT-ATTTTGTAAAAAACTT
129 AACATTCCATGCTCGA-GAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTT
* * * * * * *
847416 TTGGTCTTTGGATT--AAAC-T-TTT--GT-AAAATAGTTTGTCTCTTGGTTCTTTGACGAGCTT
193 TTGGT-TTTTGATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACTAACTT
* * * * * * *
847474 CCGAACTTTTCAAACTTTTACGAGTTTTTTTATAACTTCGATTTCTTAAAATATTCATGACGATC
257 TCGAACTTGTCAAACTTTTACGAGTTCTTTCATAACTTCGATTCCTTAAAGTATTCAAGACGATC
* * * * ** * * * *
847539 CATTCCTTCGAGCAATTTTTTTATCATTCAATGATCAAGAATTCGCATCATTTGGTCTAAATAGT
322 CATTCCTTCGAGCAATTTTCTGAACATTCCATTCTCAGGAAATAGCAGCATTTGGTCTAAATAGT
* * *
847604 TTTTCATTTTGTAAACAAGTTTTGGTCTTTGAATCAAAAACTTATTTACGTGGGAATTGTTTCTC
387 TCTTCATTTTGGAAACAAGTTTTGGTCTTTGAATCAAAAACTTATTTACGTGAGAATTGTTTCTC
* * *
847669 TTTGTTCTTGGATGAACTTCCGAACTTTTCAAACTTTTACGAGTTCTGTTATAACTTCGG---C-
452 TTGGTTCTTGGACGAACTTCCGAACTTTTCAAACTTTTACGAGTTCTTTTATAACTTCGGCTACT
* *
847730 TAC-GTATTCAAGTCGATCCATTCCTTGGAGAAATTTTCTAAACATTACATGC-TAGGGAAATGG
517 TACAGTATTCAAGACGATCCATTCCTTGGAGCAATTTTCTAAACATTACATGCTTA-GGAAATGG
*
847793 CATCATTTGGTATAAAATAGTGTGTCATTTTGTAAAAAACTTTTGGTCTTTGGATTAAACACTTA
581 CATCATTTGGTATAAAATAGTGTGTCATTTTATAAAAAACTTTTGGTCTTTGGATTAAACACTTA
*
847858 TTACGTGAGAATTGTTTCTCTCTTGGTTCTTTGACGAACTTCCGAAC-TTTCAAACTTTTACGAG
1 TTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTTTCAAACTTTTACGAG
*
847922 TTCTTTTATAACTTCGATTTCTTAGAGTATTCAAGACAATCCATTCCTTCGAGCAATTTTTCGAA
66 TTCTTTTATAACTTCGATTTCTTAGAGCATTCAAGACAATCCATTCCTTCGAGCAATTTTTCGAA
* * * * *
847987 CATTCCATGCTTGAAAAATTGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAAAAAGTTTT-
131 CATTCCATGCTCGAGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTG
848051 GTTGTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGA-TGAACTTT
196 GTT-TTTG-ATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACT-AACTTT
* * * *
848115 CGAACTGGTCAAACTTTTACGAGTTCCTTCATAACTTCGGTTCCTTAAAGCATTCAAGACGATCC
258 CGAACTTGTCAAACTTTTACGAGTTCTTTCATAACTTCGATTCCTTAAAGTATTCAAGACGATCC
* ** * * * * *
848180 ATTTCTTCGAGCAATTTTCTGAACATTGTATTCTCGGGAGATAGCAACATTTGGTTTAAATAATT
323 ATTCCTTCGAGCAATTTTCTGAACATTCCATTCTCAGGAAATAGCAGCATTTGGTCTAAATAGTT
* *
848245 CTTCATTTTGAAAACAAGTTTTGGTCTTTGAATCAAAAACTTATTTACGTGGGAATTGTTTCTCT
388 CTTCATTTTGGAAACAAGTTTTGGTCTTTGAATCAAAAACTTATTTACGTGAGAATTGTTTCTCT
* *
848310 TGGTTCTTGGATGAACTTTCGAACTTTTCAAACTTTTACGAGTTCTTTTATAACTTCGGCTACTT
453 TGGTTCTTGGACGAACTTCCGAACTTTTCAAACTTTTACGAGTTCTTTTATAACTTCGGCTACTT
* ** *
848375 ACAGTATTCAAGTCGATCCATTCCTTGGAGCAATTTTCTAAACATTACATAATTGGGAAATGGCA
518 ACAGTATTCAAGACGATCCATTCCTTGGAGCAATTTTCTAAACATTACATGCTTAGGAAATGGCA
** *
848440 TCATTTGGTATAAAATAGTGTGTCATTTTATAAAAAAACTTTTGGTCTTCAGATTAAACATTTA
583 TCATTTGGTATAAAATAGTGTGTCATTTTAT-AAAAAACTTTTGGTCTTTGGATTAAACACTTA
* * *
848504 TTACGTGAGAATTGTTTCTCTCCTGGTTCTTCGATGAACTTCCGAACTTTTCAAACTTTTACGAG
1 TTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTTTCAAACTTTTACGAG
* *
848569 TTCTTTTATAACTTCGGTTTCTTAGAGCATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGAA
66 TTCTTTTATAACTTCGATTTCTTAGAGCATTCAAGACAATCCATTCCTTCGAGCAATTTTTCGAA
* *
848634 CATTCCATGCTCGAGAAATCGCATCATTTGGCCTAAATAGTTTTTCA-TTTGTAAACAACTTTTG
131 CATTCCATGCTCGAGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTG
* *
848698 GAATTTTTTATTAAAAACTTATTTTCGTGAGAATTGTTTCTC-CTTTGGTTCTTGGACTAACTTT
196 G--TTTTTGATTAAAAACTTATTTACGTGAGAATTGTTTCTCTC-TTGGTTCTTGGACTAACTTT
*
848762 CGAACTTGTCAAACTTTTACGAGTTCTTTCATAACTTCGATTCCTTAGAGTATTCAAGACGATCC
258 CGAACTTGTCAAACTTTTACGAGTTCTTTCATAACTTCGATTCCTTAAAGTATTCAAGACGATCC
* * *
848827 ATTCCTTTGACCAATTTTTTGAACATTCCATTCTCAGGAAATAGCAGCATTTGGTCTAAATAGTT
323 ATTCCTTCGAGCAATTTTCTGAACATTCCATTCTCAGGAAATAGCAGCATTTGGTCTAAATAGTT
* * * * * *
848892 CTTCTTTTTGGGAACAAGTTTTTGTCTTTGAATCAACAGCTTATTTACGTGAGACTTGTTTCTCT
388 CTTCATTTTGGAAACAAGTTTTGGTCTTTGAATCAAAAACTTATTTACGTGAGAATTGTTTCTCT
* *
848957 TGGTTCTTGGACAAACTTCCGAACTTTTCAAACTTTTATGAGTTCTTTTATAACTTCGGCTACTT
453 TGGTTCTTGGACGAACTTCCGAACTTTTCAAACTTTTACGAGTTCTTTTATAACTTCGGCTACTT
* * *
849022 ACACTATTCAAGACGATCCATTTCTTGGAGCAATTTTCTAAACATTACATGCTTAGGAAGTGGCA
518 ACAGTATTCAAGACGATCCATTCCTTGGAGCAATTTTCTAAACATTACATGCTTAGGAAATGGCA
**
849087 TTGTTTGGTATAAAATAGTGTG-CTATTTTATAAAAAACTTTTGGTCTTTGGATTAAACACTTA
583 TCATTTGGTATAAAATAGTGTGTC-ATTTTATAAAAAACTTTTGGTCTTTGGATTAAACACTTA
* *
849150 TTACGTGAGAATTGTTTCTCTCTTGGTTCTTTGACGAACTTCCGAACTTTTCAAACTTTTACGTG
1 TTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTTTCAAACTTTTACGAG
* **
849215 TTCTTTTATAACTTCAATTTCTTAGAGCATTCAAGATGATCCATTCCTTCGAGCAATTTTTC-AA
66 TTCTTTTATAACTTCGATTTCTTAGAGCATTCAAGACAATCCATTCCTTCGAGCAATTTTTCGAA
* * *
849279 CATTTCATGCTCGAGAAATCGCATAATTTGGTCTAAATAGTTTGTCATTTTGCAAACAACTTTTG
131 CATTCCATGCTCGAGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTG
* * * *
849344 GAATTTATTG-TTAAAAACTTATTTACATGATAATTGTTTCTTTTTTGGTTCTTGGACTAACTTT
196 G--TTT-TTGATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACTAACTTT
** ** *
849408 CGAACTTGTCAAACTTTTACGAGTTCTTTCATAACTTCGATTCCTTAGTGTATTCAAGGTGAACC
258 CGAACTTGTCAAACTTTTACGAGTTCTTTCATAACTTCGATTCCTTAAAGTATTCAAGACGATCC
* **
849473 ATTCCTTTGAGCAATTTTCTGAACATTCCATTCTC-GAGAAATAATAGCATTTGGTCTAAATAGT
323 ATTCCTTCGAGCAATTTTCTGAACATTCCATTCTCAG-GAAATAGCAGCATTTGGTCTAAATAGT
* * * *
849537 TCTTCTTTTTGGGAACAAGTTTTTGTCTTTGAATCAACAACTTATTTACGTGAGAATTGTTTCTC
387 TCTTCATTTTGGAAACAAGTTTTGGTCTTTGAATCAAAAACTTATTTACGTGAGAATTGTTTCTC
* * *
849602 TTGATTCTTGGACGAACTTCCGAACTTTTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCT
452 TTGGTTCTTGGACGAACTTCCGAACTTTTCAAACTTTTACGAGTTCTTTTATAACTTCGGCTACT
* * * *
849667 TACAGTATTCAAGATGATCAATTCCTTGGAGCAATTTTCTAGACATTACATGCTTGGGAAATGGC
517 TACAGTATTCAAGACGATCCATTCCTTGGAGCAATTTTCTAAACATTACATGCTTAGGAAATGGC
* * * **
849732 GTCATTTGGTATAAAATAGTGTGTCATATTGTAAAATTCTTTTGGTCTTTGGATTAAACACTTA
582 ATCATTTGGTATAAAATAGTGTGTCATTTTATAAAAAACTTTTGGTCTTTGGATTAAACACTTA
* * * ** *
849796 TTACGTGAGAATTATTTCTCTCTTAGTCCTTGGACGAACTTTTGAA-TTGCTCAAACTTTTACGA
1 TTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTT-TTCAAACTTTTACGA
* * *
849860 GTTGTTTCATAA-----A-TTC---G-G--TT--------TCCATTCCTTCGAGCAATTTTTAGA
65 GTTCTTTTATAACTTCGATTTCTTAGAGCATTCAAGACAATCCATTCCTTCGAGCAATTTTTCGA
* * * * * * * *
849905 ACATTCTATTCTCGGGAAATAGCAGCATTTGGTCTAAATAGTTTGTCATTTAGGAAACAAGTTTT
130 ACATTCCATGCTCGAGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTT
* * * * *
849970 GGTCTTTGAATCAAAAACTTATTTATGTGAGAATTG-TT-TCTCTTGGTTCTTGGACGAACTTCC
195 GGTTTTTG-ATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACTAACTTTC
* * * * *
850033 GAACTTCTCAAACTTTTA--AGTTCTTTTATAACTTC-AGTTCCTTACACTATTCAAGACGATTC
259 GAACTTGTCAAACTTTTACGAGTTCTTTCATAACTTCGA-TTCCTTAAAGTATTCAAGACGATCC
* *
850095 ATTCCTTCGGTTCCTTACAGTATTAAAGATGATTTATTCCTTCGAGCAACTTTCCAAACATTCTG
323 ATTCCTTC-G--------AG-------CA--A-TT-TT-C-T---G-AACATT-C---CATTC--
* * * * * * * *
850160 TGCTTGGAAAATCGCATCATTT-TTCT-AAT-TTTTTGTAATTTTGTAAACAAGTTTTGGTCTTT
356 T-C-AGG-AAATAGCAGCATTTGGTCTAAATAGTTCT-TCATTTTGGAAACAAGTTTTGGTCTTT
* * * * * * * *
850222 GAATTAAATACATAATTACGTGATAATTGTTTCTCTTTTGGTTCTTGGATGAACTTCCAAACTTG
417 GAATCAAAAACTTATTTACGTGAGAATTGTTTCTC--TTGGTTCTTGGACGAACTTCCGAACTTT
* * * * * ** *
850287 TCAAACTTTTACGAGTT-TTTTAATAA-TTCCAGTTCCATAAAGTATTGTAGACAATCCATT-CT
480 TCAAACTTTTACGAGTTCTTTT-ATAACTT-CGGCTACTTACAGTATTCAAGACGATCCATTCCT
** * * * * * ** * * * *
850349 ACGAACAATTTTCTGAACCTTCCATTCTCCGGAAATCGCATCATTTGGT-TTATATAGTTTGTCA
543 TGGAGCAATTTTCTAAACATTACATGCTTAGGAAATGGCATCATTTGGTATAAAATAGTGTGTCA
* * * * * *
850413 TTTTGTAAAATAGTTTTGTTGTTTGAATTAAGA-ACTTA
608 TTTTATAAAAAACTTTTGGTCTTTGGATTAA-ACACTTA
* * * * * * *
850451 TTTACGTAAGAATTGTTTCTCTATTAGTTCTTGGATGAACTTTCGAACTTGTCAAACTTTTACTA
1 -TTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTTTCAAACTTTTACGA
* * * * * ** * * *
850516 GCTCTTTCATAACTTCAATTCCTTAAAGTGTTCAAGACGATCCATTCCTTCAAGTAA-TTTTCTG
65 GTTCTTTTATAACTTCGATTTCTTAGAGCATTCAAGACAATCCATTCCTTCGAGCAATTTTTC-G
* * * * *
850580 AACATTCCATTCTC-ACGAAATAGCAGT-ATTTGGTCTAAATAGTTCT-TCATTTTGGAAAAAAG
129 AACATTCCATGCTCGA-GAAATCGCA-TCATTTGGTCTAAATAGTT-TGTCATTTTGTAAACAAC
** * * * ** *
850642 TTTTGGTCTTTAAATAAAAAACTTAATTACTTTTGAATTGTTTCT-T-TTGGTTTTTGGAC-AAG
191 TTTTGGT-TTTTGATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACTAA-
* * * * * * *
850704 GTTCCCAACATGTCAAACTTTTACGAGTTCCTTT-ATAACTTCGGTTCCTTACATTATTCAAGAC
254 CTTTCGAACTTGTCAAACTTTTACGAGTT-CTTTCATAACTTCGATTCCTTAAAGTATTCAAGAC
* * * * ** *
850768 GATCCATTCCTTTGAGCAATTTTCTAAACATTACATGCTC-GAGAAAT-GACTTCATTTGGTATA
318 GATCCATTCCTTCGAGCAATTTTCTGAACATTCCATTCTCAG-GAAATAG-CAGCATTTGGTCTA
* * * * * * *
850831 AATAG-T-GTCATTTTGTAAAAAAACTTTTGGTCTTTGGATTAAACACTTATTGT--GTGAGAAT
381 AATAGTTCTTCATTTTG-GAAACAAGTTTTGGTCTTTGAATCAAAAACTTATT-TACGTGAGAAT
* * *
850892 TGTTTCTCTCTTGGTTCTTTGACGAACTTTCGAACTTTTCAAACTTTTACGAGTTTTTTTATAAC
444 TG-TT-TCTCTTGGTTCTTGGACGAACTTCCGAACTTTTCAAACTTTTACGAGTTCTTTTATAAC
*** * * * *
850957 TTCAATTTCTTAGAGTATTTAAGACGATCCATTCCTTCGAGCAATTTT-TAAA-A-T--A---TT
507 TTCGGCTACTTACAGTATTCAAGACGATCCATTCCTTGGAGCAATTTTCTAAACATTACATGCTT
** * ** * * * * *
851014 CCGAACTTTTCA-AACTT--T-T-ACA-A--GT-TC-TTTTAT----AAC-TTCGGTTCCTTACA
572 AGGAA-ATGGCATCATTTGGTATAAAATAGTGTGTCATTTTATAAAAAACTTTTGG-T-CTT--T
* *
851064 GTATTCAAGACGA-TACA
632 GGATT-AA-AC-ACT-TA
* * * * * *
851081 TTTCTTCGAGCAA--CTTTCTGAACAAT-TTATGTTCTTGGACGAACTTCCGAACTTCTCAAAAT
1 TTACGT-GAG-AATTGTTTCT---C--TCTT-GGTTCTTGGACGAACTTCCGAACTTTTCAAACT
** * * * * * * * *
851143 TTTACGACATCTTTTATAATTTCTATTCCATTA-AGTATTCTAGACGATCCATTCGTTTGAGCAA
58 TTTACGAGTTCTTTTATAACTTCGATTTC-TTAGAGCATTCAAGACAATCCATTCCTTCGAGCAA
* * * * *
851207 TTTTCCAAACATTCCATGCTTGGGAAATCACATCATTTGGTCTAAATAGTTTG-CATTTTGTAAA
122 TTTTTCGAACATTCCATGCTCGAGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAA
* * * *
851271 -AAGGTTTT-GTTGTTTGAACTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTTGTTTTTGG
187 CAA-CTTTTGGTT-TTTG-ATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGG
* *
851334 A-TGAACTTTCGAACTTGTCAAACTTTTACAAGTTCTTTCGAAGTTGTCAAAATTTTACGAGTTC
249 ACT-AACTTTCGAACTTGTCAAACTTTTACGAGTTCTTTC--A----T---AA-CTT-CGA-TTC
* * * * *
851398 TTTTATAATTTCTGTTCCATAAAGTATTCTAGACAATCCATTCCTTTGAGCAATTTT-TCCAACT
301 -----------C---T---TAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTCT-GAACA
* * * * * * * *
851462 TTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAG-TATGCATTTTGTAAA-AAGGTTTGGT
348 TTCCATTCTCAGGAAATAGCAGCATTTGGTCTAAATAGTTCTTCATTTTGGAAACAAGTTTTGGT
**
851525 -TGTT---T-AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTTTGA
413 CT-TTGAATCAAAAACTTATTTACGTGAGAATTG-TT-TCTCTTGGTTCTTGGACGAACTTCCGA
* * * * * * *
851585 ACTTGTCAAACTTTTACGAGTTCTTTCATAACTTTGGTTCCTTAAAGTATTCAAGACGATTCATT
475 ACTTTTCAAACTTTTACGAGTTCTTTTATAACTTCGGCTACTTACAGTATTCAAGACGATCCATT
* * * * * * ** *
851650 CATTCGAGTAATTTT-TCGAACATT-CTATGC-TCGTGATATCACATCATTTGGTCT-AAATAGT
540 CCTTGGAGCAATTTTCT-AAACATTAC-ATGCTTAG-GAAATGGCATCATTTGGTATAAAATAGT
* * * * * * * *
851711 TTGTCATTTTGTAAAAAAAGTTTCGATGTTTGAATTAAAAACTTA
602 GTGTCATTTTAT-AAAAAACTTTTGGTCTTTGGATTAAACACTTA
* * * * *
851756 TTTACGTGAGAGTTG-TT-TGTCTTGGTTCTTGGACGAACTTTCGAAATTTTCCAACTTTTACGA
1 -TTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTTTCAAACTTTTACGA
* * ** * * ** *
851819 GTTCTTTTATAACTTCGATTCCATA-AATATTCAAGACGATCCTTTAATTCGAGCAA-TTTTCTA
65 GTTCTTTTATAACTTCGATTTCTTAGAGCATTCAAGACAATCCATTCCTTCGAGCAATTTTTC-G
* * * * * * *
851882 AACATTTCATGCTCG-GCAAATCGTATCATTTGGTATAAATTGTTTGTGACTTTGTAAACAAGTT
129 AACATTCCATGCTCGAG-AAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTT
* * * * *
851946 TTGGTCTTTGCATTAAAAACTTA-TT-CTGCGAGAATTGTTTATCTCTCGGTTCTTGGACGAACT
193 TTGGTTTTTG-ATTAAAAACTTATTTAC-GTGAGAATTGTTTCTCTCTTGGTTCTTGGACTAACT
* *
852009 TTCAAACTTGTCAAACTTTTACGAGTTCTTTTATAACTT
256 TTCGAACTTGTCAAACTTTTACGAGTTCTTTCATAACTT
852048 GAGTTACAAA
Statistics
Matches: 3473, Mismatches: 490, Indels: 430
0.79 0.11 0.10
Matches are distributed among these distances:
621 1 0.00
622 41 0.01
623 4 0.00
624 43 0.01
625 6 0.00
626 44 0.01
627 62 0.02
628 9 0.00
629 12 0.00
630 5 0.00
631 6 0.00
632 66 0.02
633 125 0.04
634 163 0.05
635 46 0.01
636 12 0.00
637 8 0.00
638 1 0.00
639 3 0.00
640 254 0.07
641 5 0.00
642 3 0.00
643 101 0.03
644 57 0.02
645 146 0.04
646 730 0.21
647 496 0.14
648 13 0.00
649 3 0.00
652 10 0.00
654 4 0.00
655 97 0.03
656 114 0.03
657 82 0.02
658 6 0.00
659 14 0.00
660 110 0.03
661 4 0.00
662 6 0.00
663 12 0.00
664 72 0.02
665 10 0.00
666 2 0.00
667 11 0.00
668 133 0.04
669 84 0.02
670 7 0.00
671 3 0.00
672 1 0.00
674 3 0.00
675 15 0.00
676 139 0.04
677 9 0.00
678 47 0.01
679 4 0.00
680 2 0.00
681 3 0.00
682 4 0.00
ACGTcount: A:0.27, C:0.17, G:0.15, T:0.41
Consensus pattern (645 bp):
TTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTTTCAAACTTTTACGAG
TTCTTTTATAACTTCGATTTCTTAGAGCATTCAAGACAATCCATTCCTTCGAGCAATTTTTCGAA
CATTCCATGCTCGAGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTG
GTTTTTGATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACTAACTTTCGA
ACTTGTCAAACTTTTACGAGTTCTTTCATAACTTCGATTCCTTAAAGTATTCAAGACGATCCATT
CCTTCGAGCAATTTTCTGAACATTCCATTCTCAGGAAATAGCAGCATTTGGTCTAAATAGTTCTT
CATTTTGGAAACAAGTTTTGGTCTTTGAATCAAAAACTTATTTACGTGAGAATTGTTTCTCTTGG
TTCTTGGACGAACTTCCGAACTTTTCAAACTTTTACGAGTTCTTTTATAACTTCGGCTACTTACA
GTATTCAAGACGATCCATTCCTTGGAGCAATTTTCTAAACATTACATGCTTAGGAAATGGCATCA
TTTGGTATAAAATAGTGTGTCATTTTATAAAAAACTTTTGGTCTTTGGATTAAACACTTA
Found at i:850134 original size:35 final size:35
Alignment explanation
Indices: 850064--850138 Score: 105
Period size: 35 Copynumber: 2.1 Consensus size: 35
850054 TCTTTTATAA
* *
850064 CTTCAGTTCCTTACACTATTCAAGACGATTCATTC
1 CTTCGGTTCCTTACACTATTAAAGACGATTCATTC
* * *
850099 CTTCGGTTCCTTACAGTATTAAAGATGATTTATTC
1 CTTCGGTTCCTTACACTATTAAAGACGATTCATTC
850134 CTTCG
1 CTTCG
850139 AGCAACTTTC
Statistics
Matches: 35, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
35 35 1.00
ACGTcount: A:0.24, C:0.24, G:0.12, T:0.40
Consensus pattern (35 bp):
CTTCGGTTCCTTACACTATTAAAGACGATTCATTC
Found at i:850936 original size:214 final size:211
Alignment explanation
Indices: 847131--852047 Score: 2717
Period size: 214 Copynumber: 22.8 Consensus size: 211
847121 CTTCGGATTT
*
847131 GAGCAATTTT-TCGAACATTCCATGCTCGAGAAATCGCATCATTTGGTCTAAATAGTTTGTCATT
1 GAGCAATTTTCT-AAACATTCCATGCTCGAGAAAT-GCATCATTTGGTCTAAATAG--TGTCATT
** ** * * * *
847195 TTGTAAACTACTTTTGGAATTT---TT---TA-TT-TTTACGTGAGAATTGTTTCTTTTTTGGAT
62 TTGTAAAAAACTTTTGGTCTTTGGATTAAACACTTATTT--GTGAGAATTGTTTCTCTCTTGGTT
* * * * *
847252 CTTGGACTAACTTTCGAACTTGTT-AAACATTTACGAGTTCTTTCATAACTTCGGTTCCTTAAAG
125 CTTGGACGAACTTCCGAACTT-TTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTACAG
* * *
847316 CATTCAAGACAATCCATTCCTTAA
189 TATTCAAGACGATCCATTCCTT-C
* ** * *
847340 GAGTAATTTTCCGAACATTCCATACTC-AGGAAATCGCATCATTTGGTCAAAATAGTTTGT-ATT
1 GAGCAATTTTCTAAACATTCCATGCTCGA-GAAAT-GCATCATTTGGTCTAAATAG--TGTCATT
* * *
847403 TTGTAAAAAACTTTTGGTCTTTGGATT-AA-AC-T-TTTGT-AAAATAGTTTGTCTCTTGGTTCT
62 TTGTAAAAAACTTTTGGTCTTTGGATTAAACACTTATTTGTGAGAATTGTTTCTCTCTTGGTTCT
* * * * * * *
847463 TTGACGAGCTTCCGAACTTTTCAAACTTTTACGAGTTTTTTTATAACTTCGATTTCTTAAAATAT
127 TGGACGAACTTCCGAACTTTTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTACAGTAT
*
847528 TCATGACGATCCATTCCTTC
192 TCAAGACGATCCATTCCTTC
* * * * * * * *
847548 GAGCAATTTTTTTATCATTCAATGATCAAGAATTCGCATCATTTGGTCTAAATAGTTTTTCATTT
1 GAGCAATTTTCTAAACATTCCATGCTCGAGAAAT-GCATCATTTGGTCTAAATAG--TGTCATTT
* * * * * *
847613 TGTAAACAAGTTTTGGTCTTTGAATCAAAAACTTATTTACGTGGGAATTGTTTCTCT-TT-GTTC
63 TGTAAAAAACTTTTGGTCTTTGGATTAAACACTTATTT--GTGAGAATTGTTTCTCTCTTGGTTC
* *
847676 TTGGATGAACTTCCGAACTTTTCAAACTTTTACGAGTTCTGTTATAACTTCGG---C-TAC-GTA
126 TTGGACGAACTTCCGAACTTTTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTACAGTA
* *
847736 TTCAAGTCGATCCATTCCTTG
191 TTCAAGACGATCCATTCCTTC
* * * * *
847757 GAGAAATTTTCTAAACATTACATGCTAGGGAAATGGCATCATTTGGTATAAAATAGTGTGTCATT
1 GAGCAATTTTCTAAACATTCCATGCTCGAGAAAT-GCATCATTTGGTCT-AAATA--GTGTCATT
*
847822 TTGTAAAAAACTTTTGGTCTTTGGATTAAACACTTATTACGTGAGAATTGTTTCTCTCTTGGTTC
62 TTGTAAAAAACTTTTGGTCTTTGGATTAAACACTTATT-TGTGAGAATTGTTTCTCTCTTGGTTC
* * * *
847887 TTTGACGAACTTCCGAAC-TTTCAAACTTTTACGAGTTCTTTTATAACTTCGATTTCTTAGAGTA
126 TTGGACGAACTTCCGAACTTTTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTACAGTA
*
847951 TTCAAGACAATCCATTCCTTC
191 TTCAAGACGATCCATTCCTTC
* * *
847972 GAGCAATTTT-TCGAACATTCCATGCTTGAAAAATTGCATCATTTGGTCTAAATAGTTTGTCATT
1 GAGCAATTTTCT-AAACATTCCATGCTCGAGAAA-TGCATCATTTGGTCTAAATAG--TGTCATT
* * * * *
848036 TTGTAAAAAAGTTTTGTTGTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTT
62 TTGTAAAAAACTTTTGGTCTTTGGATTAAACACTTATTT--GTGAGAATTGTTTCTCTCTTGGTT
* * ** * * * *
848101 CTTGGATGAACTTTCGAACTGGTCAAACTTTTACGAGTTCCTTCATAACTTCGGTTCCTTAAAGC
125 CTTGGACGAACTTCCGAACTTTTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTACAGT
*
848166 ATTCAAGACGATCCATTTCTTC
190 ATTCAAGACGATCCATTCCTTC
* ** * * * * * * *
848188 GAGCAATTTTCTGAACATTGTATTCTCGGGAGATAGCAACATTTGGTTTAAATAATTCTTCATTT
1 GAGCAATTTTCTAAACATTCCATGCTCGAGAAAT-GCATCATTTGGTCTAAAT-AGT-GTCATTT
* * * * *
848253 TG-AAAACAAGTTTTGGTCTTTGAATCAAAAACTTATTTACGTGGGAATTG-TT-TCTCTTGGTT
63 TGTAAAA-AACTTTTGGTCTTTGGATTAAACACTTATTT--GTGAGAATTGTTTCTCTCTTGGTT
* * * *
848315 CTTGGATGAACTTTCGAACTTTTCAAACTTTTACGAGTTCTTTTATAACTTCGGCTACTTACAGT
125 CTTGGACGAACTTCCGAACTTTTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTACAGT
* *
848380 ATTCAAGTCGATCCATTCCTTG
190 ATTCAAGACGATCCATTCCTTC
* ** * * *
848402 GAGCAATTTTCTAAACATTACATAATTGGGAAATGGCATCATTTGGTATAAAATAGTGTGTCATT
1 GAGCAATTTTCTAAACATTCCATGCTCGAGAAAT-GCATCATTTGGTCT-AAATA--GTGTCATT
* ** * * *
848467 TTATAAAAAAACTTTTGGTCTTCAGATTAAACATTTATTACGTGAGAATTGTTTCTCTCCTGGTT
62 TTGT-AAAAAACTTTTGGTCTTTGGATTAAACACTTATT-TGTGAGAATTGTTTCTCTCTTGGTT
* * * * *
848532 CTTCGATGAACTTCCGAACTTTTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTTCTTAGAGC
125 CTTGGACGAACTTCCGAACTTTTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTACAGT
848597 ATTCAAGACGATCCATTCCTTC
190 ATTCAAGACGATCCATTCCTTC
* * *
848619 GAGCAATTTT-TCGAACATTCCATGCTCGAGAAATCGCATCATTTGGCCTAAATAGTTTTTCA-T
1 GAGCAATTTTCT-AAACATTCCATGCTCGAGAAAT-GCATCATTTGGTCTAAATAG--TGTCATT
* ** *
848682 TTGTAAACAACTTTTGGAAT-TTTTTATTAAAAACTTATTTTCGTGAGAATTGTTTCTC-CTTTG
62 TTGTAAAAAACTTTTGG--TCTTTGGATTAAACACTTA-TTT-GTGAGAATTGTTTCTCTC-TTG
* * * * * *
848745 GTTCTTGGACTAACTTTCGAACTTGTCAAACTTTTACGAGTTCTTTCATAACTTCGATTCCTTAG
122 GTTCTTGGACGAACTTCCGAACTTTTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAC
*
848810 AGTATTCAAGACGATCCATTCCTTT
187 AGTATTCAAGACGATCCATTCCTTC
* * * * * * *
848835 GACCAATTTTTTGAACATTCCATTCTC-AGGAAATAGCAGCATTTGGTCTAAATAGTTCTTCTTT
1 GAGCAATTTTCTAAACATTCCATGCTCGA-GAAAT-GCATCATTTGGTCTAAATAG-T-GTCATT
** * * * * * *
848899 TTGGGAACAAGTTTTTGTCTTT-GAATCAACAGCTTATTTACGTGAGACTTG-TT-TCTCTTGGT
62 TTGTAAAAAACTTTTGGTCTTTGGATTAAACA-CTTATTT--GTGAGAATTGTTTCTCTCTTGGT
* * * * *
848961 TCTTGGACAAACTTCCGAACTTTTCAAACTTTTATGAGTTCTTTTATAACTTCGGCTACTTACAC
124 TCTTGGACGAACTTCCGAACTTTTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTACAG
* *
849026 TATTCAAGACGATCCATTTCTTG
189 TATTCAAGACGATCCATTCCTTC
* * * ** *
849049 GAGCAATTTTCTAAACATTACATGCT-TAGGAAGTGGCATTGTTTGGTATAAAATAGTGTGCTAT
1 GAGCAATTTTCTAAACATTCCATGCTCGA-GAAAT-GCATCATTTGGTCT-AAATAGTGT-C-AT
* *
849113 TTTATAAAAAACTTTTGGTCTTTGGATTAAACACTTATTACGTGAGAATTGTTTCTCTCTTGGTT
61 TTTGTAAAAAACTTTTGGTCTTTGGATTAAACACTTATT-TGTGAGAATTGTTTCTCTCTTGGTT
* * ** * * *
849178 CTTTGACGAACTTCCGAACTTTTCAAACTTTTACGTGTTCTTTTATAACTTCAATTTCTTAGAGC
125 CTTGGACGAACTTCCGAACTTTTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTACAGT
*
849243 ATTCAAGATGATCCATTCCTTC
190 ATTCAAGACGATCCATTCCTTC
* * *
849265 GAGCAATTTT-TCAACATTTCATGCTCGAGAAATCGCATAATTTGGTCTAAATAGTTTGTCATTT
1 GAGCAATTTTCTAAACATTCCATGCTCGAGAAAT-GCATCATTTGGTCTAAATAG--TGTCATTT
* * * * * * * *
849329 TGCAAACAACTTTTGGAAT-TTATTG-TTAAAAACTTATTTACATGATAATTGTTTCTTTTTTGG
63 TGTAAAAAACTTTTGG--TCTT-TGGATTAAACACTTATTT--GTGAGAATTGTTTCTCTCTTGG
* * * * * **
849392 TTCTTGGACTAACTTTCGAACTTGTCAAACTTTTACGAGTTCTTTCATAACTTCGATTCCTTAGT
123 TTCTTGGACGAACTTCCGAACTTTTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTACA
** * *
849457 GTATTCAAGGTGAACCATTCCTTT
188 GTATTCAAGACGATCCATTCCTTC
* * * * *
849481 GAGCAATTTTCTGAACATTCCATTCTCGAGAAAT-AATAGCATTTGGTCTAAATAGTTCTTCTTT
1 GAGCAATTTTCTAAACATTCCATGCTCGAGAAATGCAT--CATTTGGTCTAAATAG-T-GTCATT
** * * * * * *
849545 TTGGGAACAAGTTTTTGTCTTT-GAATCAACAACTTATTTACGTGAGAATTG-TT-TCTCTTGAT
62 TTGTAAAAAACTTTTGGTCTTTGGATTAAAC-ACTTATTT--GTGAGAATTGTTTCTCTCTTGGT
849607 TCTTGGACGAACTTCCGAACTTTTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTACAG
124 TCTTGGACGAACTTCCGAACTTTTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTACAG
* * *
849672 TATTCAAGATGATCAATTCCTTG
189 TATTCAAGACGATCCATTCCTTC
* * * * * * *
849695 GAGCAATTTTCTAGACATTACATGCTTGGGAAATGGCGTCATTTGGTATAAAATAGTGTGTCATA
1 GAGCAATTTTCTAAACATTCCATGCTCGAGAAAT-GCATCATTTGGTCT-AAATA--GTGTCATT
** * * * *
849760 TTGTAAAATTCTTTTGGTCTTTGGATTAAACACTTATTACGTGAGAATTATTTCTCTCTTAGTCC
62 TTGTAAAAAACTTTTGGTCTTTGGATTAAACACTTATT-TGTGAGAATTGTTTCTCTCTTGGTTC
** * * * *
849825 TTGGACGAACTTTTGAA-TTGCTCAAACTTTTACGAGTTGTTTCATAAATTCGGTTTCCATTCCT
126 TTGGACGAACTTCCGAACTT-TTCAAACTTTTACGAGTTCTTTTATAACTTCGG-TTCC--T--T
* * ** *
849889 TCGAGCAATTTTTAGAAC-ATTCTATT-C-TC
185 AC-AG-TA-TTCAAG-ACGA-TCCATTCCTTC
* * ** * * * *** * * **
849918 G-GGAAATAGC--AGCATT---TGGTCTA-AATAGTTTGTCATTTAGG---AAACAAGTTTTGGT
1 GAGCAATTTTCTAAACATTCCATGCTCGAGAA-A-TGCATCATTT-GGTCTAAA-TAG-TGTCAT
* * * *** * *
849973 CTTTGAATCAAAAACTTATT--TATGTGAGAATTGTTTCTCTTGGTTCT-TGGACGAACTTCCGA
61 -TTTG--TAAAAAACTT-TTGGTCTTTG-G-ATT-AAACACTT-ATT-TGT-GA-GAA-TT--G-
* * * ** * * ** * * * * * * *
850035 ACTTCTCAAACTTTTAAGTTCTTTTA-TAACTTCAGTTC-CTT-ACACTATT-CAAG-ACGATTC
111 --TT-TC--TCTCTT-GGTTCTTGGACGAACTTCCGAACTTTTCAAACTTTTACGAGTTC-TTTT
** * * **
850095 ATTCCTTCGGTTCCTTACAGTATTAAAGATGATTTATTCCTTC
169 ATAACTTCGGTTCCTTACAGTATTCAAGACGATCCATTCCTTC
* * ** * * * ** *
850138 GAGCAACTTTCCAAACATTCTGTGCTTG-GAAAATCGCATCATTT-TTCTAATTTTTTGTAATTT
1 GAGCAATTTTCTAAACATTCCATGCTCGAG-AAAT-GCATCATTTGGTCTAA-ATAGTGTCATTT
* * * * * * * *
850201 TGTAAACAAGTTTTGGTCTTTGAATTAAATACATAATTACGTGATAATTGTTTCTCTTTTGGTTC
63 TGTAAAAAACTTTTGGTCTTTGGATTAAACAC-TTATT-TGTGAGAATTGTTTCTCTCTTGGTTC
* * * * * *
850266 TTGGATGAACTTCCAAACTTGTCAAACTTTTACGAGTT-TTTTAATAA-TTCCAGTTCCATAAAG
126 TTGGACGAACTTCCGAACTTTTCAAACTTTTACGAGTTCTTTT-ATAACTT-CGGTTCCTTACAG
** * *
850329 TATTGTAGACAATCCATT-CTAC
189 TATTCAAGACGATCCATTCCTTC
* * * * * *
850351 GAACAATTTTCTGAACCTTCCATTCTCCG-GAAATCGCATCATTTGGTTTATATAGTTTGTCATT
1 GAGCAATTTTCTAAACATTCCATGCT-CGAGAAAT-GCATCATTTGGTCTAAATAG--TGTCATT
* * * * * * * *
850415 TTGTAAAATAGTTTTGTTGTTTGAATTAAGA-ACTTATTTACGTAAGAATTGTTTCTCTATTAGT
62 TTGTAAAAAACTTTTGGTCTTTGGATTAA-ACACTTATTT--GTGAGAATTGTTTCTCTCTTGGT
* * * * * * ** *
850479 TCTTGGATGAACTTTCGAACTTGTCAAACTTTTACTAGCTCTTTCATAACTTCAATTCCTTAAAG
124 TCTTGGACGAACTTCCGAACTTTTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTACAG
*
850544 TGTTCAAGACGATCCATTCCTTC
189 TATTCAAGACGATCCATTCCTTC
* * * * *
850567 AAGTAATTTTCTGAACATTCCATTCTC-ACGAAATAGCAGT-ATTTGGTCTAAATAGTTCTTCAT
1 GAGCAATTTTCTAAACATTCCATGCTCGA-GAAAT-GCA-TCATTTGGTCTAAATAG-T-GTCAT
* * ** * * **
850630 TTTGGAAAAAAGTTTTGGTCTTTAAATAAAAAACTTAATTACT-TTTGAATTGTTTCT-T-TTGG
61 TTTGTAAAAAACTTTTGGTCTTTGGATTAAACACTT-ATT--TGTGAGAATTGTTTCTCTCTTGG
* * * * * *
850692 TTTTTGGAC-AAGGTTCCCAACATGTCAAACTTTTACGAGTTCCTTTATAACTTCGGTTCCTTAC
123 TTCTTGGACGAA-CTTCCGAACTTTTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAC
* *
850756 ATTATTCAAGACGATCCATTCCTTT
187 AGTATTCAAGACGATCCATTCCTTC
* * *
850781 GAGCAATTTTCTAAACATTACATGCTCGAGAAATGACTTCATTTGGTATAAATAGTGTCATTTTG
1 GAGCAATTTTCTAAACATTCCATGCTCGAGAAATG-CATCATTTGGTCTAAATAGTGTCATTTTG
850846 TAAAAAAACTTTTGGTCTTTGGATTAAACACTTATTGTGTGAGAATTGTTTCTCTCTTGGTTCTT
65 T-AAAAAACTTTTGGTCTTTGGATTAAACACTTATT-TGTGAGAATTGTTTCTCTCTTGGTTCTT
* * * ** * *
850911 TGACGAACTTTCGAACTTTTCAAACTTTTACGAGTTTTTTTATAACTTCAATTTCTTAGAGTATT
128 GGACGAACTTCCGAACTTTTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTACAGTATT
*
850976 TAAGACGATCCATTCCTTC
193 CAAGACGATCCATTCCTTC
* ** * * * *
850995 GAGCAATTTT-TAAA-A-T--ATTC-CGA-ACTTTTCA-AACTT--T-TACA-AGT-TC--TTT-
1 GAGCAATTTTCTAAACATTCCATGCTCGAGA-AATGCATCATTTGGTCTAAATAGTGTCATTTTG
* * * * * * *
851044 T--ATAAC-TTCGGTTCCTTACAGTATTCAAGACGA-TACATTTCTTCGAGCAA--CTTTCTGAA
65 TAAAAAACTTTTGG-T-CTT--TGGATT-AA-AC-ACT-TATTT-GT-GAG-AATTGTTTCT---
* * * ** * *
851103 CAAT-TTATGTTCTTGGACGAACTTCCGAACTTCTCAAAATTTTACGACATCTTTTATAATTTCT
116 C--TCTT-GGTTCTTGGACGAACTTCCGAACTTTTCAAACTTTTACGAGTTCTTTTATAACTTCG
* * * *
851167 ATTCCATTA-AGTATTCTAGACGATCCATTCGTTT
178 GTTCC-TTACAGTATTCAAGACGATCCATTCCTTC
* * * * *
851201 GAGCAATTTTCCAAACATTCCATGCTTGGGAAATCACATCATTTGGTCTAAATAGTTTGCATTTT
1 GAGCAATTTTCTAAACATTCCATGCTCGAGAAAT-GCATCATTTGGTCTAAATAGTGT-CATTTT
** * * * * * * *
851266 GTAAAAAGGTTTTGTTGTTTGAACTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTTGTTTT
64 GTAAAAAACTTTTGGTCTTTGGATTAAACACTTATTT--GTGAGAATTGTTTCTCTCTTGGTTCT
* * * * * ** **
851331 TGGATGAACTTTCGAACTTGTCAAACTTTTACAAGTTCTTTCGA-AGTTGTCAAAATT--TTACG
127 TGGACGAACTTCCGAACTTTTCAAACTTTTACGAGTTCTTT-TATAACT-TC--GGTTCCTTAC-
* ** * *
851393 AGTTCTTTTATA--AT---TTCTGTTC
187 AG-TATTCAAGACGATCCATTC-CTTC
* ** * * * * * * * * * * * *
851415 CATAAAGTATTCTAGACAATCCATTCCTTTGAGCAATTTTTCCAACTTTCCATGCTCGGGAAATC
1 GAGCAA-TTTTCTAAACATTCCA-TGC-TCGAG-AA---ATGCATCATT---TGGTC--TAAATA
** * * * * *
851480 GCATCATTTGGTCTAAATAGTATGCATTTTGTAAAAAGGT-TTGGTTGTTTAAAAACTTATTTAC
54 GTGTCATTT--TGTAAA-A--A---ACTTT-T-----GGTCTT--TGGATTAAACACTTATTT--
** *
851544 GTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTTTGAACTTGTCAAACTTTTACGAGTTCT
101 GTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTTTCAAACTTTTACGAGTTCT
* * * * *
851609 TTCATAACTTTGGTTCCTTAAAGTATTCAAGACGATTCATTCATTC
166 TTTATAACTTCGGTTCCTTACAGTATTCAAGACGATCCATTCCTTC
* * * * * *
851655 GAGTAATTTT-TCGAACATTCTATGCTCGTGATATCACATCATTTGGTCTAAATAGTTTGTCATT
1 GAGCAATTTTCT-AAACATTCCATGCTCGAGAAAT-GCATCATTTGGTCTAAATAG--TGTCATT
* * * * * * * *
851719 TTGTAAAAAAAGTTTCGATGTTTGAATTAAAAACTTATTTACGTGAGAGTTG-TT-TGTCTTGGT
62 TTGT-AAAAAACTTTTGGTCTTTGGATTAAACACTTATTT--GTGAGAATTGTTTCTCTCTTGGT
* * * * * *
851782 TCTTGGACGAACTTTCGAAATTTTCCAACTTTTACGAGTTCTTTTATAACTTCGATTCCATA-AA
124 TCTTGGACGAACTTCCGAACTTTTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTACAG
* **
851846 TATTCAAGACGATCCTTTAATTC
189 TATTCAAGACGATCCATTCCTTC
* * * * * *
851869 GAGCAATTTTCTAAACATTTCATGCTCG-GCAAATCGTATCATTTGGTATAAATTGTTTGTGACT
1 GAGCAATTTTCTAAACATTCCATGCTCGAG-AAAT-GCATCATTTGGTCTAAATAG--TGTCATT
* * * * * * *
851933 TTGTAAACAAGTTTTGGTCTTTGCATTAAAAACTTATTCTGCGAGAATTGTTTATCTCTCGGTTC
62 TTGTAAAAAACTTTTGGTCTTTGGATTAAACACTTATT-TGTGAGAATTGTTTCTCTCTTGGTTC
* * *
851998 TTGGACGAACTTTCAAACTTGTCAAACTTTTACGAGTTCTTTTATAACTT
126 TTGGACGAACTTCCGAACTTTTCAAACTTTTACGAGTTCTTTTATAACTT
852048 GAGTTACAAA
Statistics
Matches: 3654, Mismatches: 765, Indels: 573
0.73 0.15 0.11
Matches are distributed among these distances:
194 4 0.00
195 5 0.00
196 3 0.00
198 5 0.00
199 5 0.00
200 4 0.00
201 12 0.00
202 6 0.00
203 5 0.00
204 2 0.00
205 2 0.00
206 86 0.02
207 8 0.00
208 76 0.02
209 241 0.07
210 91 0.02
211 42 0.01
212 43 0.01
213 128 0.04
214 904 0.25
215 531 0.15
216 765 0.21
217 264 0.07
218 32 0.01
219 26 0.01
220 29 0.01
221 20 0.01
222 24 0.01
223 20 0.01
224 22 0.01
225 20 0.01
226 25 0.01
227 21 0.01
228 8 0.00
229 10 0.00
230 13 0.00
231 17 0.00
232 3 0.00
233 2 0.00
234 5 0.00
236 8 0.00
237 7 0.00
238 12 0.00
239 89 0.02
240 6 0.00
241 3 0.00
ACGTcount: A:0.27, C:0.17, G:0.15, T:0.41
Consensus pattern (211 bp):
GAGCAATTTTCTAAACATTCCATGCTCGAGAAATGCATCATTTGGTCTAAATAGTGTCATTTTGT
AAAAAACTTTTGGTCTTTGGATTAAACACTTATTTGTGAGAATTGTTTCTCTCTTGGTTCTTGGA
CGAACTTCCGAACTTTTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTACAGTATTCAA
GACGATCCATTCCTTC
Found at i:851088 original size:93 final size:93
Alignment explanation
Indices: 850922--851093 Score: 263
Period size: 93 Copynumber: 1.8 Consensus size: 93
850912 GACGAACTTT
* * * * * *
850922 CGAACTTTTCAAACTTTTACGAGTTTTTTTATAACTTCAATTTCTTAGAGTATTTAAGACGATCC
1 CGAACTTTTCAAACTTTTACAAGTTCTTTTATAACTTCAATTCCTTACAGTATTCAAGACGATAC
850987 ATTCCTTCGAGCAATTTTTAAAATATTC
66 ATTCCTTCGAGCAATTTTTAAAATATTC
**
851015 CGAACTTTTCAAACTTTTACAAGTTCTTTTATAACTTCGGTTCCTTACAGTATTCAAGACGATAC
1 CGAACTTTTCAAACTTTTACAAGTTCTTTTATAACTTCAATTCCTTACAGTATTCAAGACGATAC
*
851080 ATTTCTTCGAGCAA
66 ATTCCTTCGAGCAA
851094 CTTTCTGAAC
Statistics
Matches: 70, Mismatches: 9, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
93 70 1.00
ACGTcount: A:0.30, C:0.19, G:0.10, T:0.41
Consensus pattern (93 bp):
CGAACTTTTCAAACTTTTACAAGTTCTTTTATAACTTCAATTCCTTACAGTATTCAAGACGATAC
ATTCCTTCGAGCAATTTTTAAAATATTC
Found at i:851372 original size:29 final size:29
Alignment explanation
Indices: 851339--851400 Score: 97
Period size: 29 Copynumber: 2.1 Consensus size: 29
851329 TTTGGATGAA
*
851339 CTTTCGAACTTGTCAAACTTTTACAAGTT
1 CTTTCGAACTTGTCAAAATTTTACAAGTT
* *
851368 CTTTCGAAGTTGTCAAAATTTTACGAGTT
1 CTTTCGAACTTGTCAAAATTTTACAAGTT
851397 CTTT
1 CTTT
851401 TATAATTTCT
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
29 30 1.00
ACGTcount: A:0.26, C:0.18, G:0.13, T:0.44
Consensus pattern (29 bp):
CTTTCGAACTTGTCAAAATTTTACAAGTT
Done.