genome.fa.s15301.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01015301.1 Kokia drynarioides strain JFW-HI SEQ_130346, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  220244

Tables:   1   

This is table  1  of  1  ( 68 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3549--3628	28	2.9	28	76	12	76	23	6	21	48	1.72
3902--4029	45	2.9	45	88	1	168	20	21	25	32	1.97
5852--5946	30	3.2	30	64	8	77	45	12	4	37	1.62
5981--6022	14	3.0	14	73	13	50	33	0	4	61	1.17
6199--6273	23	3.3	23	80	9	75	36	6	1	56	1.34
6503--6545	21	2.1	21	86	4	61	58	11	2	27	1.46
6789--6935	63	2.3	63	95	1	258	56	12	0	30	1.37
6948--7008	13	4.7	13	75	16	56	1	29	0	68	0.99
6947--7008	12	4.8	12	72	20	54	1	29	0	69	0.98
7343--7369	14	1.9	14	100	0	54	70	0	0	29	0.88
8642--8696	18	3.1	17	80	17	58	40	0	0	60	0.97
8667--8701	17	2.0	18	88	5	54	48	0	0	51	1.00
12808--12850	18	2.5	17	84	3	59	62	2	0	34	1.08
14016--14071	25	2.3	23	80	14	67	33	5	16	44	1.70
14019--14078	26	2.3	26	88	5	86	33	5	15	46	1.67
20956--21025	23	3.1	23	79	6	63	51	0	4	44	1.21
21808--21834	1	27.0	1	100	0	54	100	0	0	0	0.00
27833--27869	20	1.9	18	89	10	56	27	0	5	67	1.12
28034--28092	28	2.1	29	81	9	68	61	3	3	32	1.29
29530--29575	21	2.1	22	84	4	58	23	0	4	71	1.03
30074--30103	15	1.9	16	93	6	53	33	3	3	60	1.30
33999--34171	39	4.4	39	79	0	157	26	15	16	42	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34005--34152	78	1.9	78	81	0	179	26	15	16	41	1.88
34801--34949	23	6.5	23	80	6	133	46	20	20	12	1.83
38813--39000	95	2.0	95	93	2	324	44	10	4	40	1.60
42598--42631	15	2.3	15	89	0	50	76	2	2	17	1.04
50259--50407	80	1.9	79	88	1	226	27	16	16	38	1.91
57953--58030	38	2.1	38	100	0	156	30	20	16	32	1.95
73256--73281	8	3.2	8	100	0	52	38	38	0	23	1.55
73630--73655	2	13.0	2	100	0	52	50	0	0	50	1.00
78485--78591	33	3.2	33	93	0	187	51	14	5	28	1.64
79144--79190	22	2.2	21	81	11	51	36	6	4	53	1.46
79809--79840	2	16.0	2	93	0	55	0	53	0	46	1.00
81063--81090	7	4.0	7	100	0	56	28	0	28	42	1.56
81110--81159	3	17.3	3	91	8	86	66	0	0	34	0.92
84690--84725	2	18.0	2	100	0	72	50	0	0	50	1.00
89019--89056	2	19.0	2	100	0	76	50	0	0	50	1.00
93070--93227	82	1.9	82	92	0	262	31	18	21	28	1.97
109406--109475	29	2.4	29	85	2	97	25	10	21	42	1.84
114468--114505	14	2.5	15	87	8	51	36	0	0	63	0.95
122081--122138	29	2.0	29	83	12	75	29	0	15	55	1.41
129315--129357	21	2.0	21	86	4	59	51	4	0	44	1.22
134623--134682	27	2.3	26	85	2	84	41	1	1	55	1.20
134624--134698	37	2.0	37	85	10	100	42	4	2	50	1.35
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
134637--134712	26	2.7	26	77	18	73	39	3	3	52	1.38
134671--134731	31	2.0	31	83	6	79	39	6	6	47	1.55
135202--135270	31	2.3	29	82	7	75	40	8	13	37	1.75
136854--136939	30	2.9	30	91	0	136	22	3	16	58	1.53
141433--141554	60	2.0	60	100	0	244	21	14	19	44	1.86
144345--144524	87	2.1	87	98	0	351	30	15	15	40	1.87
145742--145774	8	4.2	8	84	7	50	72	3	0	24	0.98
146035--146132	48	2.0	49	96	4	180	28	10	18	42	1.83
150693--150717	2	12.5	2	100	0	50	48	0	0	52	1.00
151203--151243	18	2.3	18	87	8	57	51	2	0	46	1.14
168553--168638	19	4.3	20	71	15	70	40	0	2	56	1.12
168526--168662	21	6.6	21	72	14	63	41	0	2	56	1.11
168593--168664	31	2.4	31	84	13	96	43	0	1	55	1.08
168765--168798	13	2.6	13	86	13	52	20	0	2	76	0.92
170978--171020	17	2.5	17	80	3	50	60	0	4	34	1.17
174915--176700	917	2.0	907	99	0	3473	32	22	11	32	1.90
177240--177280	20	2.0	20	85	0	55	4	12	0	82	0.81
185996--186028	17	1.9	17	100	0	66	42	6	12	39	1.67
198927--198969	14	3.1	14	100	0	86	44	6	20	27	1.77
201804--201839	17	2.1	17	94	0	63	30	2	22	44	1.67
204992--205024	12	2.6	13	90	4	50	87	6	6	0	0.65
213537--213613	38	2.0	38	97	0	145	41	5	14	38	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
218891--219064	23	7.5	23	79	10	149	44	21	22	12	1.85
218946--219064	48	2.5	48	84	10	156	43	22	21	11	1.85

Tables:   1

The End!