Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NTFQ01015304.1 Kokia drynarioides strain JFW-HI SEQ_130349, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 160460
ACGTcount: A:0.35, C:0.16, G:0.16, T:0.34
Warning! 547 characters in sequence are not A, C, G, or T
Found at i:388 original size:21 final size:21
Alignment explanation
Indices: 364--412 Score: 55
Period size: 21 Copynumber: 2.3 Consensus size: 21
354 CTCAATTTAT
*
364 TTGAGTTTTATTTGAAAAAAA
1 TTGAGTTTTAATTGAAAAAAA
* *
385 TTGAAG-TTTAATTGAGAAATA
1 TTG-AGTTTTAATTGAAAAAAA
406 TTGAGTT
1 TTGAGTT
413 GAGCTCAAGT
Statistics
Matches: 23, Mismatches: 3, Indels: 4
0.77 0.10 0.13
Matches are distributed among these distances:
20 2 0.09
21 19 0.83
22 2 0.09
ACGTcount: A:0.39, C:0.00, G:0.18, T:0.43
Consensus pattern (21 bp):
TTGAGTTTTAATTGAAAAAAA
Found at i:3946 original size:27 final size:27
Alignment explanation
Indices: 3916--3969 Score: 65
Period size: 27 Copynumber: 2.0 Consensus size: 27
3906 TTGAGCATTC
3916 ATTTCACTA-TTCATAAAAAAATAAAAT
1 ATTTCA-TATTTCATAAAAAAATAAAAT
* **
3943 ATTTTATATTTCATAATTAAATAAAAT
1 ATTTCATATTTCATAAAAAAATAAAAT
3970 TAATTTCTAT
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
26 2 0.09
27 21 0.91
ACGTcount: A:0.52, C:0.07, G:0.00, T:0.41
Consensus pattern (27 bp):
ATTTCATATTTCATAAAAAAATAAAAT
Found at i:4260 original size:171 final size:173
Alignment explanation
Indices: 3970--4312 Score: 672
Period size: 172 Copynumber: 2.0 Consensus size: 173
3960 TAAATAAAAT
3970 TAATTTCTATTATTGATAAATAAACACAATTGTCGGTACAAACTCGAACAGTAATTATTTTTTCA
1 TAATTTCTATTATTGATAAATAAACACAATTGTCGGTACAAACTCGAACAGTAATTATTTTTTCA
4035 AAAAAGGAGGAATTTCATGTTGGTTAAGGGAGATGATGAGATGAAGATGGAGATTGCTTTGGTAG
66 AAAAAGGAGGAATTTCATGTTGGTTAAGGGAGATGATGAGATGAAGATGGAGATTGCTTTGGTAG
4100 TATGAGTGGAAA-TAAATGTAAATTAATTAGTTTGGGGGTTTA
131 TATGAGTGGAAATTAAATGTAAATTAATTAGTTTGGGGGTTTA
4142 TAATTTCTATTATTGATAAATAAACACAATTGTCGGTACAAACTCGAACAGTAATTA-TTTTTCA
1 TAATTTCTATTATTGATAAATAAACACAATTGTCGGTACAAACTCGAACAGTAATTATTTTTTCA
4206 AAAAAGGAGGAATTTCATGTTGGTTAAGGGAGATGATGAGATGAAGATGGAGATTGCTTTGGTAG
66 AAAAAGGAGGAATTTCATGTTGGTTAAGGGAGATGATGAGATGAAGATGGAGATTGCTTTGGTAG
4271 TATGAGTGGAAATTAAATGTAAATTAATTAGTTTGGGGGTTT
131 TATGAGTGGAAATTAAATGTAAATTAATTAGTTTGGGGGTTT
4313 GGGGTTAGCT
Statistics
Matches: 170, Mismatches: 0, Indels: 2
0.99 0.00 0.01
Matches are distributed among these distances:
171 84 0.49
172 86 0.51
ACGTcount: A:0.36, C:0.06, G:0.23, T:0.34
Consensus pattern (173 bp):
TAATTTCTATTATTGATAAATAAACACAATTGTCGGTACAAACTCGAACAGTAATTATTTTTTCA
AAAAAGGAGGAATTTCATGTTGGTTAAGGGAGATGATGAGATGAAGATGGAGATTGCTTTGGTAG
TATGAGTGGAAATTAAATGTAAATTAATTAGTTTGGGGGTTTA
Found at i:16232 original size:58 final size:59
Alignment explanation
Indices: 16157--16276 Score: 156
Period size: 58 Copynumber: 2.1 Consensus size: 59
16147 AATTTCAAAA
* * * *
16157 AATAAAGAACCATCAATTTGA-TTTTCAATAGTATAGATTTCAATAT-ATAACTTCCAATT
1 AATAAAGAACCAGCAATTTGAGTTTT-AATAGTATAAATTTCAACATCA-AACTTCCAACT
*
16216 AATAAA-AACCAGCAATTTGAGTTTTGATAGTATAAATTTCAACATCAAACTTCCAACT
1 AATAAAGAACCAGCAATTTGAGTTTTAATAGTATAAATTTCAACATCAAACTTCCAACT
16274 AAT
1 AAT
16277 CCCAAATTAA
Statistics
Matches: 54, Mismatches: 5, Indels: 5
0.84 0.08 0.08
Matches are distributed among these distances:
58 43 0.80
59 11 0.20
ACGTcount: A:0.43, C:0.15, G:0.07, T:0.34
Consensus pattern (59 bp):
AATAAAGAACCAGCAATTTGAGTTTTAATAGTATAAATTTCAACATCAAACTTCCAACT
Found at i:21396 original size:274 final size:278
Alignment explanation
Indices: 21055--21781 Score: 843
Period size: 274 Copynumber: 2.6 Consensus size: 278
21045 GACCTTCCTT
* * *
21055 TTACATAATTCCATACATGTCAATGTCAATACGTTCCTAATAAATTACCAGCTCATGCATTTATA
1 TTACATAATTCCATACATGTCAATGTCAATACG-TCCTGATAAATTATCAGCTCACGCATTTATA
21120 CGTTTTAAACATGTATATTTTAAACATACTTGAAATGCCCTTACTTCGCCATTTCCTTTTGATAG
65 CGTTTTAAACATGTATATTTTAAACATAC-TGAAATGCCCTTACTTCGCCATTTCCTTTTGATAG
* *
21185 TGTGTAATGTTCCACTGATAAAAGTGTTTTAGAAA-GGTGGA-CTACAA-TTGAAATTTAACCAT
129 TGTGTAACGTTCCACTGATAAAAGTGTTTTAGAAATGG-GGATC-A-AATTTGAAATTTAACAAT
* * * *
21247 TTT-T-ATA-A-T-GCAAAGAAAGCAAATCATGGTGATCCACGTGTCAATAAAAAT-GACTTACA
191 TTTATAATACAGTAGAAAAGAAAGCAAATCATGGTGATCCACATGTCAATAAAAATGGA-TGAAA
21306 TATGGACCTTCCTTTTATATACAA
255 TATGGACCTTCCTTTTATATACAA
*
21330 TTACGTAATTCCATACATGTCAATG-CTAATACGTCCTGATAAATTATCAGCTCACGCATTTATA
1 TTACATAATTCCATACATGTCAATGTC-AATACGTCCTGATAAATTATCAGCTCACGCATTTATA
* * * * *
21394 CGTTTTAAACATATATATTTTAAACTTAAC-GAAAATGTCCTAACTTCACCACTTT-CTTTTGAT
65 CGTTTTAAACATGTATATTTTAAACAT-ACTG-AAATGCCCTTACTTCGCCA-TTTCCTTTTGAT
* * *
21457 AGTATGTAACGTTCTAC-GAATAAAA-TCGTTTTAAAAATGGGGATCAAATTTGAAATTTAACAA
127 AGTGTGTAACGTTCCACTG-ATAAAAGT-GTTTTAGAAATGGGGATCAAATTTGAAATTTAACAA
* * * *
21520 TTTTCATAATACAGTAAAAAATAAAAGAAAGCAAATCGTGGTGATCCACATGTCATTACAAATGG
190 TTTT-ATAATACAGT-----AGAAAAGAAAGCAAATCATGGTGATCCACATGTCAATAAAAATGG
*
21585 ATGAAATTTGGACCTTCCTTTTATATACAA
249 ATGAAATATGGACCTTCCTTTTATATACAA
* * * *
21615 TTATATAATTCCATACATGTCAATATCAGTACGTCCTTGATAAATTGTCAGCTCACGCATTTATA
1 TTACATAATTCCATACATGTCAATGTCAATACGTCC-TGATAAATTATCAGCTCACGCATTTATA
* ** * * ** *
21680 CGTTTTAAAGATGTATATTTTAAATGTACCTAAAATGCCTTTACTTCGCCCCTTCCTTTTGACAG
65 CGTTTTAAACATGTATATTTTAAACATA-CTGAAATGCCCTTACTTCGCCATTTCCTTTTGATAG
* *
21745 TGTGTAACGTTCCACTAATAAAAGCGTTTTAGAAATG
129 TGTGTAACGTTCCACTGATAAAAGTGTTTTAGAAATG
21782 AGTGACCAAG
Statistics
Matches: 379, Mismatches: 45, Indels: 45
0.81 0.10 0.10
Matches are distributed among these distances:
273 5 0.01
274 128 0.34
275 38 0.10
276 1 0.00
277 3 0.01
278 1 0.00
279 1 0.00
285 95 0.25
286 107 0.28
ACGTcount: A:0.35, C:0.17, G:0.13, T:0.35
Consensus pattern (278 bp):
TTACATAATTCCATACATGTCAATGTCAATACGTCCTGATAAATTATCAGCTCACGCATTTATAC
GTTTTAAACATGTATATTTTAAACATACTGAAATGCCCTTACTTCGCCATTTCCTTTTGATAGTG
TGTAACGTTCCACTGATAAAAGTGTTTTAGAAATGGGGATCAAATTTGAAATTTAACAATTTTAT
AATACAGTAGAAAAGAAAGCAAATCATGGTGATCCACATGTCAATAAAAATGGATGAAATATGGA
CCTTCCTTTTATATACAA
Found at i:22481 original size:23 final size:24
Alignment explanation
Indices: 22451--22500 Score: 66
Period size: 24 Copynumber: 2.1 Consensus size: 24
22441 TGACATATTT
* * *
22451 ATAATATA-AATATATGTTTAAAA
1 ATAATATACAATAAATATTGAAAA
22474 ATAATATACAATAAATATTGAAAA
1 ATAATATACAATAAATATTGAAAA
22498 ATA
1 ATA
22501 TTGTTCGGAA
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
23 8 0.35
24 15 0.65
ACGTcount: A:0.60, C:0.02, G:0.04, T:0.34
Consensus pattern (24 bp):
ATAATATACAATAAATATTGAAAA
Found at i:23505 original size:22 final size:22
Alignment explanation
Indices: 23477--23518 Score: 75
Period size: 22 Copynumber: 1.9 Consensus size: 22
23467 TGAACTATTC
23477 AAAAGTTTTCATTTAAATCACT
1 AAAAGTTTTCATTTAAATCACT
*
23499 AAAAGTTTTTATTTAAATCA
1 AAAAGTTTTCATTTAAATCA
23519 TTGGATGGTT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.43, C:0.10, G:0.05, T:0.43
Consensus pattern (22 bp):
AAAAGTTTTCATTTAAATCACT
Found at i:26586 original size:16 final size:16
Alignment explanation
Indices: 26565--26596 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
26555 TAACTTTTTT
26565 TATGTGATATGTGAAA
1 TATGTGATATGTGAAA
26581 TATGTGATATGTGAAA
1 TATGTGATATGTGAAA
26597 AGAATAAACT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.38, C:0.00, G:0.25, T:0.38
Consensus pattern (16 bp):
TATGTGATATGTGAAA
Found at i:29097 original size:201 final size:193
Alignment explanation
Indices: 28718--29112 Score: 526
Period size: 201 Copynumber: 2.0 Consensus size: 193
28708 TGTCTTTAAT
*
28718 CTTCGATTAATTCAGTTATTATTTTAATTTCGATGCTTTTTTTAGCTCTGTTTTTGTGATTGAAT
1 CTTCGATTAATCCAGTTATTATTTTAATTTCGATGC-TTTTTTAGCTCTGTTTTTGTGATTGAAT
*
28783 TTCTAGGTTTTTCTTCATTTCTTCATCAAATTATTTTATATGTTAAATTTTGAATTCCTAGTTAT
65 TTCTAGGTTTTTCTTCATTTCTTCATCAAATTATTGTATATGTTAAATTTTGAATTCCTAGTTAT
* ***
28848 TTAGTAGAAACAAAGGGATCTTTATAATTTTTTCCCCATTTGGAGTTTAAAGATGCAGGTGGAA
130 TAAGTAGAAACAAAGGGATCTTTATAAAAATTTCCCCATTTGGAGTTTAAAGATGCAGGTGGAA
*
28912 CTTCGATTAATCCAGTTATTATTATTTTAATTTTGATGC-TTTTTAGCTCTGTTTTTGTGATTGA
1 CTTCGATTAATCCAG---TTATTATTTTAATTTCGATGCTTTTTTAGCTCTGTTTTTGTGATTGA
* * *
28976 ATTTCTGGGTTTTTCTTCATTTCTTCAT-TAATTGTTGTATATGTTGATTTTTGAATTTTGAATT
63 ATTTCTAGGTTTTTCTTCATTTCTTCATCAAATTATTGTATATGTT-A------AATTTTGAATT
* ** * *
29040 CCTAGTTCTTAAGTAGAAGTAAAGGGAT-TTTTTAAAAAATTTCCCCATTTGGAGTTTAAAGTTG
121 CCTAGTTATTAAGTAGAAACAAAGGGATCTTTAT-AAAAATTTCCCCATTTGGAGTTTAAAGATG
29104 CAGGTGGAA
185 CAGGTGGAA
29113 ATTTGATTGT
Statistics
Matches: 175, Mismatches: 15, Indels: 15
0.85 0.07 0.07
Matches are distributed among these distances:
194 28 0.16
195 53 0.30
197 20 0.11
200 4 0.02
201 70 0.40
ACGTcount: A:0.25, C:0.11, G:0.16, T:0.49
Consensus pattern (193 bp):
CTTCGATTAATCCAGTTATTATTTTAATTTCGATGCTTTTTTAGCTCTGTTTTTGTGATTGAATT
TCTAGGTTTTTCTTCATTTCTTCATCAAATTATTGTATATGTTAAATTTTGAATTCCTAGTTATT
AAGTAGAAACAAAGGGATCTTTATAAAAATTTCCCCATTTGGAGTTTAAAGATGCAGGTGGAA
Found at i:32239 original size:19 final size:19
Alignment explanation
Indices: 32217--32259 Score: 65
Period size: 19 Copynumber: 2.4 Consensus size: 19
32207 TTTATAACAC
32217 ATATATA-AT-TATTTAAT
1 ATATATATATATATTTAAT
32234 ATATATATATATATTTAAT
1 ATATATATATATATTTAAT
32253 ATA-ATAT
1 ATATATAT
32260 TTTTATAATA
Statistics
Matches: 24, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
17 7 0.29
18 6 0.25
19 11 0.46
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (19 bp):
ATATATATATATATTTAAT
Found at i:51370 original size:2 final size:2
Alignment explanation
Indices: 51363--51389 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
51353 ATGACATTAC
51363 AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT A
51390 ACGCATCAGA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:62184 original size:15 final size:15
Alignment explanation
Indices: 62164--62193 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
62154 AAATTTTCTA
62164 TTTATAACTAAATAT
1 TTTATAACTAAATAT
*
62179 TTTATAATTAAATAT
1 TTTATAACTAAATAT
62194 GAATACTATT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.47, C:0.03, G:0.00, T:0.50
Consensus pattern (15 bp):
TTTATAACTAAATAT
Found at i:66320 original size:72 final size:72
Alignment explanation
Indices: 66234--66367 Score: 223
Period size: 72 Copynumber: 1.9 Consensus size: 72
66224 GAAAAATACT
* * **
66234 AAATTATTAAATTGACTATTGAAGTCTTTTAAACGGTGATTTGGCTTGTACATGCAAAATTTTAA
1 AAATTATTAAATTGAATATTGAAGTCTTTTAAACGATGATTTAACTTGTACATGCAAAATTTTAA
66299 ATTTGGA
66 ATTTGGA
*
66306 AAATTATTAAATTGAATATTGAAGTCTTTTAAACGATGATTTAACTTGTACTTGCAAAATTT
1 AAATTATTAAATTGAATATTGAAGTCTTTTAAACGATGATTTAACTTGTACATGCAAAATTT
66368 GAAGCTTGCT
Statistics
Matches: 57, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
72 57 1.00
ACGTcount: A:0.37, C:0.08, G:0.14, T:0.41
Consensus pattern (72 bp):
AAATTATTAAATTGAATATTGAAGTCTTTTAAACGATGATTTAACTTGTACATGCAAAATTTTAA
ATTTGGA
Found at i:72331 original size:22 final size:21
Alignment explanation
Indices: 72294--72345 Score: 59
Period size: 22 Copynumber: 2.4 Consensus size: 21
72284 TATATAACCC
** * *
72294 TTTCTTTTTATTTTTTCTTTA
1 TTTCTTTTTAGGTTTTCATGA
72315 TCTTCTTTTTAGGTTTTCATGA
1 T-TTCTTTTTAGGTTTTCATGA
72337 TTTCTTTTT
1 TTTCTTTTT
72346 GTATTGATTT
Statistics
Matches: 26, Mismatches: 4, Indels: 2
0.81 0.12 0.06
Matches are distributed among these distances:
21 9 0.35
22 17 0.65
ACGTcount: A:0.10, C:0.12, G:0.06, T:0.73
Consensus pattern (21 bp):
TTTCTTTTTAGGTTTTCATGA
Found at i:75994 original size:28 final size:28
Alignment explanation
Indices: 75963--76028 Score: 89
Period size: 28 Copynumber: 2.4 Consensus size: 28
75953 ATGTATCGAA
75963 TTAAA-TTATAATTAATTCCAAAATATTT
1 TTAAATTTAT-ATTAATTCCAAAATATTT
* *
75991 TTAAGTTTATTTTAATTCCAAAATATTT
1 TTAAATTTATATTAATTCCAAAATATTT
*
76019 TTAAGTTTAT
1 TTAAATTTAT
76029 TTTTGGTCTG
Statistics
Matches: 35, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
28 31 0.89
29 4 0.11
ACGTcount: A:0.39, C:0.06, G:0.03, T:0.52
Consensus pattern (28 bp):
TTAAATTTATATTAATTCCAAAATATTT
Found at i:76029 original size:28 final size:28
Alignment explanation
Indices: 75974--76031 Score: 116
Period size: 28 Copynumber: 2.1 Consensus size: 28
75964 TAAATTATAA
75974 TTAATTCCAAAATATTTTTAAGTTTATT
1 TTAATTCCAAAATATTTTTAAGTTTATT
76002 TTAATTCCAAAATATTTTTAAGTTTATT
1 TTAATTCCAAAATATTTTTAAGTTTATT
76030 TT
1 TT
76032 TGGTCTGATT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 30 1.00
ACGTcount: A:0.34, C:0.07, G:0.03, T:0.55
Consensus pattern (28 bp):
TTAATTCCAAAATATTTTTAAGTTTATT
Found at i:79473 original size:20 final size:20
Alignment explanation
Indices: 79448--79485 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
79438 TTTAATTATT
79448 TAATTATTTGAAAA-TTTTCA
1 TAATTATTT-AAAAGTTTTCA
79468 TAATTATTTAAAAGTTTT
1 TAATTATTTAAAAGTTTT
79486 TATTTAAATT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
19 4 0.24
20 13 0.76
ACGTcount: A:0.39, C:0.03, G:0.05, T:0.53
Consensus pattern (20 bp):
TAATTATTTAAAAGTTTTCA
Found at i:82143 original size:10 final size:10
Alignment explanation
Indices: 82085--82150 Score: 53
Period size: 10 Copynumber: 6.4 Consensus size: 10
82075 TATTTTTATT
82085 TTTATTTAATA
1 TTTATTTAA-A
*
82096 TTTA-ATAAA
1 TTTATTTAAA
*
82105 TTTATTAAAA
1 TTTATTTAAA
*
82115 TTTTATTTATA
1 -TTTATTTAAA
*
82126 TTCATTTAAA
1 TTTATTTAAA
*
82136 TTTTTTTAATA
1 TTTATTTAA-A
82147 TTTA
1 TTTA
82151 CATTATAATA
Statistics
Matches: 42, Mismatches: 10, Indels: 6
0.72 0.17 0.10
Matches are distributed among these distances:
9 5 0.12
10 21 0.50
11 16 0.38
ACGTcount: A:0.38, C:0.02, G:0.00, T:0.61
Consensus pattern (10 bp):
TTTATTTAAA
Found at i:87115 original size:6 final size:6
Alignment explanation
Indices: 87104--87143 Score: 55
Period size: 6 Copynumber: 6.5 Consensus size: 6
87094 TAATGTATCA
87104 ATTTAT ATTTAT ATTTAAT ATTTAT -TTTATT ATTTAT ATT
1 ATTTAT ATTTAT ATTT-AT ATTTAT ATTTA-T ATTTAT ATT
87144 CAAAATTTAT
Statistics
Matches: 31, Mismatches: 0, Indels: 6
0.84 0.00 0.16
Matches are distributed among these distances:
5 4 0.13
6 17 0.55
7 10 0.32
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.68
Consensus pattern (6 bp):
ATTTAT
Found at i:87132 original size:12 final size:13
Alignment explanation
Indices: 87104--87164 Score: 63
Period size: 13 Copynumber: 4.8 Consensus size: 13
87094 TAATGTATCA
87104 ATTT-ATATTTAT
1 ATTTAATATTTAT
87116 ATTTAATATTTAT
1 ATTTAATATTTAT
*
87129 -TTTATTATTTAT
1 ATTTAATATTTAT
* *
87141 ATTCAAAATTTAT
1 ATTTAATATTTAT
* *
87154 AATTATTATTT
1 ATTTAATATTT
87165 TTAATAATAT
Statistics
Matches: 39, Mismatches: 8, Indels: 3
0.78 0.16 0.06
Matches are distributed among these distances:
12 15 0.38
13 24 0.62
ACGTcount: A:0.36, C:0.02, G:0.00, T:0.62
Consensus pattern (13 bp):
ATTTAATATTTAT
Found at i:87137 original size:25 final size:26
Alignment explanation
Indices: 87104--87164 Score: 81
Period size: 25 Copynumber: 2.4 Consensus size: 26
87094 TAATGTATCA
* *
87104 ATTTA-TATTTATATTTAATATTTAT
1 ATTTATTATTTATATTCAAAATTTAT
87129 -TTTATTATTTATATTCAAAATTTAT
1 ATTTATTATTTATATTCAAAATTTAT
*
87154 AATTATTATTT
1 ATTTATTATTT
87165 TTAATAATAT
Statistics
Matches: 31, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
24 4 0.13
25 18 0.58
26 9 0.29
ACGTcount: A:0.36, C:0.02, G:0.00, T:0.62
Consensus pattern (26 bp):
ATTTATTATTTATATTCAAAATTTAT
Found at i:89205 original size:96 final size:95
Alignment explanation
Indices: 89016--89207 Score: 219
Period size: 96 Copynumber: 2.0 Consensus size: 95
89006 TCTTTGGAAA
* * * *
89016 AAGGATATTCGATTATCTTGATTTAAAGAAAAGTTGCACCTAGTAAGTTAAGGCGCAGTATTTCA
1 AAGGATATTCGATTATCTTGATTTAAAGAAAAATTGCACCTAGTAAGTTAAAGCACAATATTTCA
*
89081 GAATCGAAGATAAGGAAACATTGTCTCGATT
66 GAATCGAAGATAAGG-AACATTGCCTCGATT
* * * *
89112 AAGGGTATTCGATTATTTTGATTTGAGGAAAAATTGCACCTAGTAAGTTAAAGCACAA-ATTTTC
1 AAGGATATTCGATTATCTTGATTTAAAGAAAAATTGCACCTAGTAAGTTAAAGCACAATA-TTTC
* *
89176 GGAACTCGAA-ATAAAAGG-ATATTGCCTCGATT
65 AGAA-TCGAAGAT--AAGGAACATTGCCTCGATT
89208 TTAAAGTTTT
Statistics
Matches: 81, Mismatches: 11, Indels: 8
0.81 0.11 0.08
Matches are distributed among these distances:
95 1 0.01
96 71 0.88
97 5 0.06
98 4 0.05
ACGTcount: A:0.36, C:0.12, G:0.20, T:0.31
Consensus pattern (95 bp):
AAGGATATTCGATTATCTTGATTTAAAGAAAAATTGCACCTAGTAAGTTAAAGCACAATATTTCA
GAATCGAAGATAAGGAACATTGCCTCGATT
Found at i:89635 original size:25 final size:24
Alignment explanation
Indices: 89591--89640 Score: 64
Period size: 25 Copynumber: 2.0 Consensus size: 24
89581 CAAAAATGGG
*
89591 ATTTTTAGAAGTTCGGGGGTAAAA
1 ATTTTTAGAAGTTCGCGGGTAAAA
**
89615 NATTTTTAGAAGTTTTCGGGTAAAA
1 -ATTTTTAGAAGTTCGCGGGTAAAA
89640 A
1 A
89641 ATGGGATTTT
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
24 1 0.05
25 21 0.95
ACGTcount: A:0.34, C:0.04, G:0.24, T:0.36
Consensus pattern (24 bp):
ATTTTTAGAAGTTCGCGGGTAAAA
Found at i:89750 original size:59 final size:59
Alignment explanation
Indices: 89616--90039 Score: 594
Period size: 59 Copynumber: 7.2 Consensus size: 59
89606 GGGGTAAAAN
* * * *
89616 ATTTTTAGAAGTTTTCGGGTAAAAAATGGGATTTTTGGGAGTTCGGGGGGTAAAATGGTA
1 ATTTTTAGAAGTTTTGGGGTCAAAAATGGGATTTTTGGAAGTTC-GAGGGTAAAATGGTA
* *
89676 ACTTTTAGAAGTTTTGAGGTCAAAAATGGGATTTTTGGAAGTTCGAGGGTAAAATGGTA
1 ATTTTTAGAAGTTTTGGGGTCAAAAATGGGATTTTTGGAAGTTCGAGGGTAAAATGGTA
*
89735 ATTTTTAGAAGTTTTGGGGTCAAAAATGGGATTTTTTGAAGTTCGAGGGTAAAATGGT-
1 ATTTTTAGAAGTTTTGGGGTCAAAAATGGGATTTTTGGAAGTTCGAGGGTAAAATGGTA
89793 ATTTTTAGAAGTTTTGGGGTCAAAAATGGGATTTTTGGAAGTTCGAGGGTAAAAT-GTA
1 ATTTTTAGAAGTTTTGGGGTCAAAAATGGGATTTTTGGAAGTTCGAGGGTAAAATGGTA
* *
89851 A-TTTTGGAA-TGTTTGGGGTCAAAAATGGGATTTTTGGAAGTTCGGGGGT-AAATGGTA
1 ATTTTTAGAAGT-TTTGGGGTCAAAAATGGGATTTTTGGAAGTTCGAGGGTAAAATGGTA
* * **
89908 A-TTTTAGAAGGTTCGGGGTCAAAAATGGGATTTTTGGAAG-TC-AGGAGGTAATGTGGTA
1 ATTTTTAGAAGTTTTGGGGTCAAAAATGGGATTTTTGGAAGTTCGA-G-GGTAAAATGGTA
* * *
89966 ATTTTTAGAAGTTTCGGGGTCAAAAATGGGATTTTTGGAAGTTCGAGTGTAAAATGATA
1 ATTTTTAGAAGTTTTGGGGTCAAAAATGGGATTTTTGGAAGTTCGAGGGTAAAATGGTA
*
90025 ATTTTTGGACAGTTT
1 ATTTTTAGA-AGTTT
90040 AAGGACTTAC
Statistics
Matches: 329, Mismatches: 24, Indels: 22
0.88 0.06 0.06
Matches are distributed among these distances:
56 8 0.02
57 88 0.27
58 62 0.19
59 123 0.37
60 47 0.14
61 1 0.00
ACGTcount: A:0.29, C:0.04, G:0.31, T:0.36
Consensus pattern (59 bp):
ATTTTTAGAAGTTTTGGGGTCAAAAATGGGATTTTTGGAAGTTCGAGGGTAAAATGGTA
Found at i:91188 original size:15 final size:15
Alignment explanation
Indices: 91148--91189 Score: 66
Period size: 15 Copynumber: 2.8 Consensus size: 15
91138 ATTATTAAAT
*
91148 ATTATTATTGATGTC
1 ATTATTATTGTTGTC
91163 ATTATTATTGTTGTC
1 ATTATTATTGTTGTC
*
91178 ATTAATATTGTT
1 ATTATTATTGTT
91190 AATGATATTA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 25 1.00
ACGTcount: A:0.26, C:0.05, G:0.12, T:0.57
Consensus pattern (15 bp):
ATTATTATTGTTGTC
Found at i:97196 original size:7 final size:7
Alignment explanation
Indices: 97184--97227 Score: 88
Period size: 7 Copynumber: 6.3 Consensus size: 7
97174 ATGGATGCCC
97184 TTTTATA
1 TTTTATA
97191 TTTTATA
1 TTTTATA
97198 TTTTATA
1 TTTTATA
97205 TTTTATA
1 TTTTATA
97212 TTTTATA
1 TTTTATA
97219 TTTTATA
1 TTTTATA
97226 TT
1 TT
97228 CAACGTGGCT
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 37 1.00
ACGTcount: A:0.27, C:0.00, G:0.00, T:0.73
Consensus pattern (7 bp):
TTTTATA
Found at i:100111 original size:18 final size:19
Alignment explanation
Indices: 100088--100123 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
100078 TATAATAATG
100088 ACATTTG-ATATTTAAATC
1 ACATTTGAATATTTAAATC
*
100106 ACATTTGAATTTTTAAAT
1 ACATTTGAATATTTAAAT
100124 TAAAAAAACT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 7 0.44
19 9 0.56
ACGTcount: A:0.39, C:0.08, G:0.06, T:0.47
Consensus pattern (19 bp):
ACATTTGAATATTTAAATC
Found at i:102804 original size:29 final size:28
Alignment explanation
Indices: 102752--102835 Score: 86
Period size: 29 Copynumber: 3.0 Consensus size: 28
102742 TTGTATGAGT
102752 AATTTTT--TTTTTA-ATTTAGAATTT-
1 AATTTTTAATTTTTATATTTAGAATTTA
*
102776 AATTTTTGAATTTTTATATTTAAGTATTTA
1 AATTTTT-AATTTTTATATTT-AGAATTTA
* *
102806 AATTTTTTATTTTTATATTTTAAAATTTA
1 AATTTTTAATTTTTATA-TTTAGAATTTA
102835 A
1 A
102836 GTTCAACTGT
Statistics
Matches: 49, Mismatches: 4, Indels: 9
0.79 0.06 0.15
Matches are distributed among these distances:
24 7 0.14
27 6 0.12
28 4 0.08
29 22 0.45
30 10 0.20
ACGTcount: A:0.33, C:0.00, G:0.04, T:0.63
Consensus pattern (28 bp):
AATTTTTAATTTTTATATTTAGAATTTA
Found at i:105344 original size:9 final size:9
Alignment explanation
Indices: 105312--105346 Score: 54
Period size: 9 Copynumber: 3.9 Consensus size: 9
105302 CAAACATCTT
105312 TAAAA-TTA
1 TAAAATTTA
105320 TAAAAATTTA
1 T-AAAATTTA
105330 TAAAATTTA
1 TAAAATTTA
105339 TAAAATTT
1 TAAAATTT
105347 GGAACTTTTT
Statistics
Matches: 25, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
8 1 0.04
9 20 0.80
10 4 0.16
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (9 bp):
TAAAATTTA
Found at i:106275 original size:3 final size:3
Alignment explanation
Indices: 106269--106312 Score: 88
Period size: 3 Copynumber: 14.7 Consensus size: 3
106259 TTTTTCCTTT
106269 TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TT
1 TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TT
106313 TTGGTGCTGT
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 41 1.00
ACGTcount: A:0.00, C:0.32, G:0.00, T:0.68
Consensus pattern (3 bp):
TTC
Found at i:108591 original size:3 final size:3
Alignment explanation
Indices: 108578--108632 Score: 101
Period size: 3 Copynumber: 18.3 Consensus size: 3
108568 AATCACATCC
*
108578 AAG ATG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG
1 AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG
108626 AAG AAG A
1 AAG AAG A
108633 TGGGGATACT
Statistics
Matches: 50, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
3 50 1.00
ACGTcount: A:0.65, C:0.00, G:0.33, T:0.02
Consensus pattern (3 bp):
AAG
Found at i:111305 original size:71 final size:71
Alignment explanation
Indices: 111133--111723 Score: 404
Period size: 71 Copynumber: 8.2 Consensus size: 71
111123 TTTATTGAAG
* * ** * *
111133 GGTTGGGATAGACTCGTCTAAGGCAACCTTTTAAAGGACTGGGATAGA-CTTGTCTAAGGCAACA
1 GGTTGGGATAGACCCGTTTAAGGCAACCTTAAAAAGG-TTGGGATAGACCTTTTCTAAGGCAAC-
*
111197 TTTAAAAAAA
64 CTT--AAAAA
* * ** * * * *
111207 AGTTGGAATAGACTTGTCTAAGACAACCTTAAAAAGGTTTGGATAGACCTTTTCTAAGGAAACCT
1 GGTTGGGATAGACCCGTTTAAGGCAACCTTAAAAAGGTTGGGATAGACCTTTTCTAAGGCAACCT
111272 TAAAAA
66 TAAAAA
* * * *
111278 GGTTGGGATAGACCCATTTAAGGCAACCTTAAAAAGGTTAGGATAGACCTTATCTAAGGTAACCT
1 GGTTGGGATAGACCCGTTTAAGGCAACCTTAAAAAGGTTGGGATAGACCTTTTCTAAGGCAACCT
111343 TAAAAA
66 TAAAAA
* * * ** * * * ** * *
111349 AGTTGGAATAGGTCTTGTCTAAGACAACCTTTAAAAAAGGTTGGGATAAACC-CGTATAAGGCAG
1 GGTTGGGATA-GACCCGTTTAAGGCAACC-TT-AAAAAGGTTGGGATAGACCTTTTCTAAGGCAA
*
111413 CTTTAAAAA
63 CCTTAAAAA
* * * * * * * * *** *
111422 TGGTTGGGATAGACTCGTATAAGACAACTTTAAAAAAGTAGAGATAAATAATGTCTAAGGCAACC
1 -GGTTGGGATAGACCCGTTTAAGGCAACCTTAAAAAGGTTGGGATAGACCTTTTCTAAGGCAACC
111487 TTAAAAA
65 TTAAAAA
** * * * *
111494 GGTTGGGATAGATCTTGTTTGAGGCAACCTT-TAAA--TTGAGATAGACCTTGTT-TGAGGCAAC
1 GGTTGGGATAGA-CCCGTTTAAGGCAACCTTAAAAAGGTTGGGATAGACCTT-TTCTAAGGCAAC
111555 CTTTAAAAAA
64 C-TT-AAAAA
** * *
111565 ACTTGGGATAAACCTTGTTTAAGGCAACCTTAAAAAGGTTGGGATAGA-CTTTGTCTAAGGCAAC
1 GGTTGGGATAGACC-CGTTTAAGGCAACCTTAAAAAGGTTGGGATAGACCTTT-TCTAAGGCAAC
111629 CTTTTAAAAA
64 C--TTAAAAA
** * ** *
111639 GGTTGGGATAGACTTTGTCTAAGGCAACCTTTTAAAAAGGTTGGGATAGACCTTAGCTAAGGAAA
1 GGTTGGGATAGAC-CCGTTTAAGGCAACC--TTAAAAAGGTTGGGATAGACCTTTTCTAAGGCAA
111704 CCTTAAAAA
63 CCTTAAAAA
* *
111713 AGTTGGCATAG
1 GGTTGGGATAG
111724 TGTGGACAAA
Statistics
Matches: 413, Mismatches: 83, Indels: 42
0.77 0.15 0.08
Matches are distributed among these distances:
69 18 0.04
70 4 0.01
71 132 0.32
72 48 0.12
73 45 0.11
74 131 0.32
75 3 0.01
76 29 0.07
77 3 0.01
ACGTcount: A:0.37, C:0.14, G:0.22, T:0.27
Consensus pattern (71 bp):
GGTTGGGATAGACCCGTTTAAGGCAACCTTAAAAAGGTTGGGATAGACCTTTTCTAAGGCAACCT
TAAAAA
Found at i:111349 original size:145 final size:143
Alignment explanation
Indices: 111133--111723 Score: 525
Period size: 145 Copynumber: 4.1 Consensus size: 143
111123 TTTATTGAAG
* * ** * *
111133 GGTTGGGATAGACTCGTCTAAGGCAACCTTTTAAAGGACTGGGATAGA-CTTGTCTAAGGCAACA
1 GGTTGGGATAGACCCGTTTAAGGCAACCTTAAAAAGG-TTAGGATAGACCTTGTCTAAGGCAAC-
* *
111197 TTTAAAAAAAAGTTGGAATAGACTTGTCTAAGACAACC-TTAAAAAGGTTTGGATAGACCTTTTC
64 CTT--AAAAAAGTTGGAATAGACTTGTCTAAGACAACCTTTAAAAAGGTTGGGATAGACCTTTTC
111261 TAAGGAAACCTTAAAAA
127 TAAGGAAACCTTAAAAA
* * *
111278 GGTTGGGATAGACCCATTTAAGGCAACCTTAAAAAGGTTAGGATAGACCTTATCTAAGGTAACCT
1 GGTTGGGATAGACCCGTTTAAGGCAACCTTAAAAAGGTTAGGATAGACCTTGTCTAAGGCAACCT
* * ** *
111343 TAAAAAAGTTGGAATAGGTCTTGTCTAAGACAACCTTTAAAAAAGGTTGGGATAAACC-CGTATA
66 TAAAAAAGTTGGAATA-GACTTGTCTAAGACAACCTTT-AAAAAGGTTGGGATAGACCTTTTCTA
* * *
111407 AGGCAGCTTTAAAAA
129 AGGAAACCTTAAAAA
* * * * * * ***
111422 TGGTTGGGATAGACTCGTATAAGACAACTTTAAAAAAG-TAGAGATAAATAATGTCTAAGGCAAC
1 -GGTTGGGATAGACCCGTTTAAGGCAACCTTAAAAAGGTTAG-GATAGACCTTGTCTAAGGCAAC
* * * * * *
111486 CTTAAAAAGGTTGGGATAGATCTTGTTTGAGGCAACCTTT--AAA--TTGAGATAGACCTTGTT-
64 CTTAAAAAAGTTGGAATAGA-CTTGTCTAAGACAACCTTTAAAAAGGTTGGGATAGACCTT-TTC
* *
111546 TGAGGCAACCTTTAAAAAA
127 TAAGGAAACC-TT-AAAAA
** * * * *
111565 ACTTGGGATAAACCTTGTTTAAGGCAACCTTAAAAAGGTTGGGATAGACTTTGTCTAAGGCAACC
1 GGTTGGGATAGACC-CGTTTAAGGCAACCTTAAAAAGGTTAGGATAGACCTTGTCTAAGGCAACC
* * * **
111630 TTTTAAAAAGGTTGGGATAGACTTTGTCTAAGGCAACCTTTTAAAAAGGTTGGGATAGACCTTAG
65 --TTAAAAAAGTTGGAATAGAC-TTGTCTAAGACAACC-TTTAAAAAGGTTGGGATAGACCTTTT
111695 CTAAGGAAACCTTAAAAA
126 CTAAGGAAACCTTAAAAA
* *
111713 AGTTGGCATAG
1 GGTTGGGATAG
111724 TGTGGACAAA
Statistics
Matches: 356, Mismatches: 68, Indels: 41
0.77 0.15 0.09
Matches are distributed among these distances:
140 10 0.03
141 7 0.02
142 31 0.09
143 59 0.17
144 34 0.10
145 173 0.49
146 3 0.01
148 16 0.04
149 2 0.01
150 21 0.06
ACGTcount: A:0.37, C:0.14, G:0.22, T:0.27
Consensus pattern (143 bp):
GGTTGGGATAGACCCGTTTAAGGCAACCTTAAAAAGGTTAGGATAGACCTTGTCTAAGGCAACCT
TAAAAAAGTTGGAATAGACTTGTCTAAGACAACCTTTAAAAAGGTTGGGATAGACCTTTTCTAAG
GAAACCTTAAAAA
Found at i:111590 original size:38 final size:37
Alignment explanation
Indices: 111133--111723 Score: 506
Period size: 36 Copynumber: 16.3 Consensus size: 37
111123 TTTATTGAAG
* *
111133 GGTTGGGATAGA-CTCGTCTAAGGCAACCTTT-TAAA
1 GGTTGGGATAGACCTTGTCTAAGGCAACCTTTAAAAA
* *
111168 GGACTGGGATAGA-CTTGTCTAAGGCAACATTTAAAAAAA
1 GG-TTGGGATAGACCTTGTCTAAGGCAACCTTT--AAAAA
* * *
111207 AGTTGGAATAGA-CTTGTCTAAGACAACC-TTAAAAA
1 GGTTGGGATAGACCTTGTCTAAGGCAACCTTTAAAAA
* * *
111242 GGTTTGGATAGACCTTTTCTAAGGAAACC-TTAAAAA
1 GGTTGGGATAGACCTTGTCTAAGGCAACCTTTAAAAA
*
111278 GGTTGGGATAGACCCAT-T-TAAGGCAACC-TTAAAAA
1 GGTTGGGATAGA-CCTTGTCTAAGGCAACCTTTAAAAA
* * *
111313 GGTTAGGATAGACCTTATCTAAGGTAACC-TTAAAAA
1 GGTTGGGATAGACCTTGTCTAAGGCAACCTTTAAAAA
* * ** *
111349 AGTTGGAATAGGTCTTGTCTAAGACAACCTTTAAAAAA
1 GGTTGGGATAGACCTTGTCTAAGGCAACCTTT-AAAAA
* * * *
111387 GGTTGGGATAAACC-CGTATAAGGC-AGCTTTAAAAA
1 GGTTGGGATAGACCTTGTCTAAGGCAACCTTTAAAAA
* * *
111422 TGGTTGGGATAGA-CTCGTATAAGACAA-CTTTAAAAA
1 -GGTTGGGATAGACCTTGTCTAAGGCAACCTTTAAAAA
* * * * ***
111458 AGTAGAGATAAATAATGTCTAAGGCAACC-TTAAAAA
1 GGTTGGGATAGACCTTGTCTAAGGCAACCTTTAAAAA
* * *
111494 GGTTGGGATAGATCTTGTTTGAGGCAACCTTT--AAA
1 GGTTGGGATAGACCTTGTCTAAGGCAACCTTTAAAAA
* * *
111529 --TTGAGATAGACCTTGTTTGAGGCAACCTTTAAAAAA
1 GGTTGGGATAGACCTTGTCTAAGGCAACCTTT-AAAAA
** * *
111565 ACTTGGGATAAACCTTGTTTAAGGCAACC-TTAAAAA
1 GGTTGGGATAGACCTTGTCTAAGGCAACCTTTAAAAA
*
111601 GGTTGGGATAGACTTTGTCTAAGGCAACCTTTTAAAAA
1 GGTTGGGATAGACCTTGTCTAAGGCAACC-TTTAAAAA
*
111639 GGTTGGGATAGACTTTGTCTAAGGCAACCTTTTAAAAA
1 GGTTGGGATAGACCTTGTCTAAGGCAACC-TTTAAAAA
*
111677 GGTTGGGATAGACCTTAG-CTAAGGAAACC-TTAAAAA
1 GGTTGGGATAGACCTT-GTCTAAGGCAACCTTTAAAAA
* *
111713 AGTTGGCATAG
1 GGTTGGGATAG
111724 TGTGGACAAA
Statistics
Matches: 461, Mismatches: 71, Indels: 47
0.80 0.12 0.08
Matches are distributed among these distances:
33 28 0.06
34 3 0.01
35 61 0.13
36 214 0.46
37 20 0.04
38 130 0.28
39 5 0.01
ACGTcount: A:0.37, C:0.14, G:0.22, T:0.27
Consensus pattern (37 bp):
GGTTGGGATAGACCTTGTCTAAGGCAACCTTTAAAAA
Found at i:112102 original size:141 final size:140
Alignment explanation
Indices: 111719--112138 Score: 556
Period size: 141 Copynumber: 3.0 Consensus size: 140
111709 AAAAAGTTGG
* * *
111719 CATAGTG-TGGACAAAGCCAACTCTTATTTAAGCGTTATTTTAGGCATGCATATTTCAACCCTTA
1 CATAGTGTTGGACAAAGCCAACTCTTATTTAAGCGTTATCTTAGACATGCATATCTCAACCCTTA
* * *** * * *
111783 TACAAAGAGTTGGCCAAAGTGTATGCCAGCAAGTCTATCCCAACATTTAGGAAAGTGTCGGCGCA
66 TACAAAGAGTTGGCAAAAGCGTATGTTGGCAAGTCTATCCCAACACTTAGGAAAGTGTCGCCCCA
*
111848 AAAGTGTTGC
131 AAAGTGTCGC
* * *
111858 TATAGTGTTGGACAAAGCCGACTCTTATTTAAGCGTTACCTTA-AGCATGCATATCTCAACCCTT
1 CATAGTGTTGGACAAAGCCAACTCTTATTTAAGCGTTATCTTAGA-CATGCATATCTCAACCCTT
111922 ATACAAAAGAGTTGGCAAAAGCGTATGTTGGCAAGTCTATCCCAACACTTAGGAAAGTGTCGCCC
65 ATAC-AAAGAGTTGGCAAAAGCGTATGTTGGCAAGTCTATCCCAACACTTAGGAAAGTGTCGCCC
111987 CAAAAAGTGTCGC
129 C-AAAAGTGTCGC
* * * * *
112000 CATAGTGTTAGACAAAGGCAACTCTTATTTAAGCGTTGTCTTAGACATGCATATCCCAACCTTTA
1 CATAGTGTTGGACAAAGCCAACTCTTATTTAAGCGTTATCTTAGACATGCATATCTCAACCCTTA
* * * * ** *
112065 TACAAATAGTTAGCTAAAGCGTATGTTGGCAAGTCTATCCTAACACTTAAAAAAGTATCGCCCCA
66 TACAAAGAGTTGGCAAAAGCGTATGTTGGCAAGTCTATCCCAACACTTAGGAAAGTGTCGCCCCA
112130 AAAGTGTCG
131 AAAGTGTCG
112139 TCTTAGGACT
Statistics
Matches: 246, Mismatches: 30, Indels: 9
0.86 0.11 0.03
Matches are distributed among these distances:
139 6 0.02
140 64 0.26
141 107 0.43
142 68 0.28
143 1 0.00
ACGTcount: A:0.32, C:0.21, G:0.19, T:0.28
Consensus pattern (140 bp):
CATAGTGTTGGACAAAGCCAACTCTTATTTAAGCGTTATCTTAGACATGCATATCTCAACCCTTA
TACAAAGAGTTGGCAAAAGCGTATGTTGGCAAGTCTATCCCAACACTTAGGAAAGTGTCGCCCCA
AAAGTGTCGC
Found at i:115199 original size:98 final size:99
Alignment explanation
Indices: 115030--115296 Score: 376
Period size: 98 Copynumber: 2.7 Consensus size: 99
115020 CATGCAATGA
* * *
115030 CGAACCTTGTACCT-AGGAAGCATGAAAGGAAAGATTTAAGCCGTAACGGCTAATCCAGTACCAC
1 CGAACCTTGTACCTCA-GAAGCATGAAGGGAAAGATTTAAGCCGCAACGGCGAATCCAGTACCAC
** **
115094 GAAGATATGGAGAGAAAGGTTTAAATCGTAAC-GG
65 GAAGATATGGAGAGAAAAATTTAAATCACAACGGG
* * * *
115128 CGAACCTTGTACCTCAGTAGCATGAAGGGAAAGATATAAGCAGCAACGGCGAATCTAGTACCACG
1 CGAACCTTGTACCTCAGAAGCATGAAGGGAAAGATTTAAGCCGCAACGGCGAATCCAGTACCACG
* *
115193 AAGATATGGAGGGAAAAATTTAAGTCACAACGGG
66 AAGATATGGAGAGAAAAATTTAAATCACAACGGG
*
115227 CGAACCTTATACCTCAGAAGCATGAAAGGGAAAGATTTAAGCCGCAACGGCGAATCCAGTACCAC
1 CGAACCTTGTACCTCAGAAGCATG-AAGGGAAAGATTTAAGCCGCAACGGCGAATCCAGTACCAC
115292 GAAGA
65 GAAGA
115297 CACAAAGGGA
Statistics
Matches: 148, Mismatches: 18, Indels: 4
0.87 0.11 0.02
Matches are distributed among these distances:
98 81 0.55
99 25 0.17
100 42 0.28
ACGTcount: A:0.38, C:0.19, G:0.25, T:0.17
Consensus pattern (99 bp):
CGAACCTTGTACCTCAGAAGCATGAAGGGAAAGATTTAAGCCGCAACGGCGAATCCAGTACCACG
AAGATATGGAGAGAAAAATTTAAATCACAACGGG
Found at i:115315 original size:49 final size:49
Alignment explanation
Indices: 115046--115328 Score: 218
Period size: 49 Copynumber: 5.8 Consensus size: 49
115036 TTGTACCTAG
* * *
115046 GAAG-CATGAAAGGAAAGATTTAAGCCGTAACGGCTAATCCAGTACCAC
1 GAAGACATGAAGGGAAAGATTTAAGCCGCAACGGCGAATCCAGTACCAC
* * * * ** * * *
115094 GAAGATATGGAGAGAAAGGTTTAAATCGTAACGGCGAA-CCTTGTACCTC
1 GAAGACATGAAGGGAAAGATTTAAGCCGCAACGGCGAATCC-AGTACCAC
* * * *
115143 AGTAG-CATGAAGGGAAAGATATAAGCAGCAACGGCGAATCTAGTACCAC
1 -GAAGACATGAAGGGAAAGATTTAAGCCGCAACGGCGAATCCAGTACCAC
* * * * * *
115192 GAAGATATGGAGGGAAAAATTTAAGTCACAACGGGCGAA-CCTTA-TACCTC
1 GAAGACATGAAGGGAAAGATTTAAGCCGCAAC-GGCGAATCC--AGTACCAC
115242 AGAAG-CATGAAAGGGAAAGATTTAAGCCGCAACGGCGAATCCAGTACCAC
1 -GAAGACATG-AAGGGAAAGATTTAAGCCGCAACGGCGAATCCAGTACCAC
** * * *
115292 GAAGACACAAAGGGAAAGGTTTAAGTCGCAATGGCGA
1 GAAGACATGAAGGGAAAGATTTAAGCCGCAACGGCGA
115329 GCCTTATACC
Statistics
Matches: 178, Mismatches: 44, Indels: 25
0.72 0.18 0.10
Matches are distributed among these distances:
48 9 0.05
49 112 0.63
50 31 0.17
51 26 0.15
ACGTcount: A:0.39, C:0.18, G:0.26, T:0.17
Consensus pattern (49 bp):
GAAGACATGAAGGGAAAGATTTAAGCCGCAACGGCGAATCCAGTACCAC
Found at i:115462 original size:136 final size:137
Alignment explanation
Indices: 115210--115462 Score: 348
Period size: 136 Copynumber: 1.9 Consensus size: 137
115200 GGAGGGAAAA
* * * *
115210 ATTTAAGTCACAACGGGCGAACCTTATACCTCAGAAGCATGAAAGGGAAAGATTTAAGCCGCAAC
1 ATTTAAGTCACAACGGGCGAACCTTATACCTCAAAAACACGAAAGGGAAAGATTCAAGCCGCAAC
* * * * *
115275 GGCGAATCCAGTACCACGAAGACACAAAGGGAAAGGTTTAAGTCGCAATGGCGAGCCTTATACCT
66 GGCGAATCCAGTACCACGAAGACACAAAAGGAAAGATTGAAGCCACAATGGCGAGCCTTATACCT
115340 TCGAAGC
131 TCGAAGC
*
115347 ATTTAAGTCACAAC-GGCGAACCTTGTACCTCAAAAAACACG-AAGGGAAAGATTCAAGCCGCAA
1 ATTTAAGTCACAACGGGCGAACCTTATACCTC-AAAAACACGAAAGGGAAAGATTCAAGCCGCAA
* * * * *
115410 CGGTGAATCTAGTACCACGAAGACATAAAAGGAAATATTGAAGCCACCATGGC
65 CGGCGAATCCAGTACCACGAAGACACAAAAGGAAAGATTGAAGCCACAATGGC
115463 AAATCTTAAA
Statistics
Matches: 100, Mismatches: 15, Indels: 3
0.85 0.13 0.03
Matches are distributed among these distances:
136 80 0.80
137 20 0.20
ACGTcount: A:0.38, C:0.23, G:0.23, T:0.17
Consensus pattern (137 bp):
ATTTAAGTCACAACGGGCGAACCTTATACCTCAAAAACACGAAAGGGAAAGATTCAAGCCGCAAC
GGCGAATCCAGTACCACGAAGACACAAAAGGAAAGATTGAAGCCACAATGGCGAGCCTTATACCT
TCGAAGC
Found at i:119066 original size:6 final size:6
Alignment explanation
Indices: 119055--119081 Score: 54
Period size: 6 Copynumber: 4.5 Consensus size: 6
119045 TACTCACCCC
119055 CTTCAT CTTCAT CTTCAT CTTCAT CTT
1 CTTCAT CTTCAT CTTCAT CTTCAT CTT
119082 TGTCGTGATT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 21 1.00
ACGTcount: A:0.15, C:0.33, G:0.00, T:0.52
Consensus pattern (6 bp):
CTTCAT
Found at i:121416 original size:29 final size:29
Alignment explanation
Indices: 121381--121475 Score: 95
Period size: 29 Copynumber: 3.3 Consensus size: 29
121371 TTAATAAAAC
121381 TAATAATTGGAGTAAAATGAATAACGATT
1 TAATAATTGGAGTAAAATGAATAACGATT
** * * * **
121410 TAATAATTTAAATATCAATTTAATAA--AAC
1 TAATAATTGGAGTA--AAATGAATAACGATT
121439 TAATAATTGGAGTAAAATGAATAACGATT
1 TAATAATTGGAGTAAAATGAATAACGATT
121468 TAATAATT
1 TAATAATT
121476 TAGATACCAA
Statistics
Matches: 48, Mismatches: 14, Indels: 8
0.69 0.20 0.11
Matches are distributed among these distances:
27 8 0.17
29 32 0.67
31 8 0.17
ACGTcount: A:0.51, C:0.04, G:0.11, T:0.35
Consensus pattern (29 bp):
TAATAATTGGAGTAAAATGAATAACGATT
Found at i:121434 original size:58 final size:58
Alignment explanation
Indices: 121370--121501 Score: 246
Period size: 58 Copynumber: 2.3 Consensus size: 58
121360 ACTGAATTTT
*
121370 TTTAATAAAACTAATAATTGGAGTAAAATGAATAACGATTTAATAATTTAAATATCAA
1 TTTAATAAAACTAATAATTGGAGTAAAATGAATAACGATTTAATAATTTAAATACCAA
*
121428 TTTAATAAAACTAATAATTGGAGTAAAATGAATAACGATTTAATAATTTAGATACCAA
1 TTTAATAAAACTAATAATTGGAGTAAAATGAATAACGATTTAATAATTTAAATACCAA
121486 TTTAATAAAACTAATA
1 TTTAATAAAACTAATA
121502 TAATTTAAAT
Statistics
Matches: 72, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
58 72 1.00
ACGTcount: A:0.52, C:0.06, G:0.08, T:0.34
Consensus pattern (58 bp):
TTTAATAAAACTAATAATTGGAGTAAAATGAATAACGATTTAATAATTTAAATACCAA
Found at i:124908 original size:21 final size:21
Alignment explanation
Indices: 124882--124948 Score: 82
Period size: 21 Copynumber: 3.1 Consensus size: 21
124872 TTTAGGGTTT
*
124882 AAGAAGGAAAAAAAATAAGAA
1 AAGAAGGAAGAAAAATAAGAA
124903 AAGAAGAGGAAGAAAAATAAGAA
1 AAG-A-AGGAAGAAAAATAAGAA
*
124926 GAAGAA-GAAGAAAAAGAAGAA
1 -AAGAAGGAAGAAAAATAAGAA
124947 AA
1 AA
124949 TTGGATTGGG
Statistics
Matches: 41, Mismatches: 2, Indels: 7
0.82 0.04 0.14
Matches are distributed among these distances:
20 2 0.05
21 17 0.41
22 2 0.05
23 17 0.41
24 3 0.07
ACGTcount: A:0.73, C:0.00, G:0.24, T:0.03
Consensus pattern (21 bp):
AAGAAGGAAGAAAAATAAGAA
Found at i:124909 original size:3 final size:3
Alignment explanation
Indices: 124898--124946 Score: 55
Period size: 3 Copynumber: 16.7 Consensus size: 3
124888 GAAAAAAAAT
* * * *
124898 AAG AA- AAG AAG AGG AAG AAA AAT AAG AAG AAG AAG AAG AAA AAG AAG
1 AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG
124945 AA
1 AA
124947 AATTGGATTG
Statistics
Matches: 38, Mismatches: 7, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
2 2 0.05
3 36 0.95
ACGTcount: A:0.71, C:0.00, G:0.27, T:0.02
Consensus pattern (3 bp):
AAG
Found at i:124926 original size:18 final size:18
Alignment explanation
Indices: 124901--124946 Score: 67
Period size: 18 Copynumber: 2.6 Consensus size: 18
124891 AAAAAATAAG
*
124901 AAAAGAAGAGGAAGAA-A
1 AAAAGAAGAAGAAGAAGA
124918 AATAAGAAGAAGAAGAAGA
1 AA-AAGAAGAAGAAGAAGA
124937 AAAAGAAGAA
1 AAAAGAAGAA
124947 AATTGGATTG
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
17 2 0.08
18 21 0.81
19 3 0.12
ACGTcount: A:0.72, C:0.00, G:0.26, T:0.02
Consensus pattern (18 bp):
AAAAGAAGAAGAAGAAGA
Found at i:124947 original size:9 final size:9
Alignment explanation
Indices: 124892--124948 Score: 55
Period size: 9 Copynumber: 6.4 Consensus size: 9
124882 AAGAAGGAAA
*
124892 AAAAATAAG
1 AAAAAGAAG
124901 -AAAAGAAG
1 AAAAAGAAG
**
124909 AGGAAGAA-
1 AAAAAGAAG
124917 AAATAAGAAG
1 AAA-AAGAAG
*
124927 AAGAAGAAG
1 AAAAAGAAG
124936 AAAAAGAAG
1 AAAAAGAAG
124945 AAAA
1 AAAA
124949 TTGGATTGGG
Statistics
Matches: 38, Mismatches: 7, Indels: 6
0.75 0.14 0.12
Matches are distributed among these distances:
8 8 0.21
9 28 0.74
10 2 0.05
ACGTcount: A:0.74, C:0.00, G:0.23, T:0.04
Consensus pattern (9 bp):
AAAAAGAAG
Found at i:130753 original size:2 final size:2
Alignment explanation
Indices: 130746--130774 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
130736 AACACCTCTA
130746 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
130775 AAGATTTGAA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:131985 original size:17 final size:17
Alignment explanation
Indices: 131963--132006 Score: 52
Period size: 17 Copynumber: 2.5 Consensus size: 17
131953 TATTTTTTAT
*
131963 TTTAAATTTATTCTAAG
1 TTTAAATTTATTCTAAA
* *
131980 TTTAAAATTATTTTAAA
1 TTTAAATTTATTCTAAA
131997 TTTGAAATTT
1 TTT-AAATTT
132007 GAAAGATTAT
Statistics
Matches: 22, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
17 17 0.77
18 5 0.23
ACGTcount: A:0.39, C:0.02, G:0.05, T:0.55
Consensus pattern (17 bp):
TTTAAATTTATTCTAAA
Found at i:132658 original size:14 final size:15
Alignment explanation
Indices: 132629--132677 Score: 53
Period size: 15 Copynumber: 3.1 Consensus size: 15
132619 TTATTTCTAG
*
132629 TTAATAAATGTATAA
1 TTAATAAATATATAA
*
132644 TTAATAATATATAATAT
1 TTAATAA-ATAT-ATAA
*
132661 TTATTAAATATATAA
1 TTAATAAATATATAA
132676 TT
1 TT
132678 TAAAAAAAAA
Statistics
Matches: 28, Mismatches: 4, Indels: 4
0.78 0.11 0.11
Matches are distributed among these distances:
15 12 0.43
16 7 0.25
17 9 0.32
ACGTcount: A:0.51, C:0.00, G:0.02, T:0.47
Consensus pattern (15 bp):
TTAATAAATATATAA
Found at i:133840 original size:587 final size:577
Alignment explanation
Indices: 132728--133870 Score: 2187
Period size: 587 Copynumber: 2.0 Consensus size: 577
132718 NNNNNNNNNN
132728 AGAAATCCGAAAAGGCTCACCTTAAACCGATCAGCCACCATCGAACGGAGTCCCTTCGAGTTGTC
1 AGAAATCCGAAAAGGCTCACCTTAAACCGATCAGCCACCATCGAACGGAGTCCCTTCGAGTTGTC
132793 GTCAACACAGCCCCCAAATATCGTTGTCCTCGTGGTTCCAAAAATGACAGAATCAAGAAATGCAT
66 GTCAACACAGCCCCCAAATATCGTTGTCCTCGTGGTTCCAAAAATGACAGAATCAAGAAATGCAT
132858 TGAAATAGACTTAAAACAAAAATATATATATGAATAAGAAAACTAAACGAAAACTGATAAAAAGG
131 TGAAATAGACTTAAAACAAAAATATATATATGAATAAGAAAACTAAACGAAAACTGATAAAAAGG
132923 AAGAAAGAACATGAAAAAATTAAAACTTTTTCTTTGGATCTGGGTTTTCACTCCATATCTGAAAT
196 AAGAAAGAACATGAAAAAATTAAAACTTTTTCTTTGGATCTGGGTTTTCACTCCATATCTGAAAT
132988 TTTCAAAAAAAAAAAAATGGGATAAAAAGGAGAAAACTTTCGATGGTAATCGGCTTAGATTCGAG
261 TTTCAAAAAAAAAAAAATGGGATAAAAAGGAGAAAACTTTCGATGGTAATCGGCTTAGATTCGAG
133053 TTTTTTAGGGTTGATCTATGCTTTTAAAAAAATTATAAAAAAGAGAAGAAATTTTACCTTGGGCC
326 TTTTTTAGGGTTGATCTATGCTTTTAAAAAAATTATAAAAAAGAGAAGAAATTTTACCTTGGGCC
133118 CCCGTGCATGGCGACGACGGAGGCGACCGACGATGGCCAATGGACGGTAGGCCGAAGACGGAACT
391 CCCGTGCATGGCGACGACGGAGGCGACCGACGATGGCCAATGGACGGTAGGCCGAAGACGGAACT
133183 TGGCCAACCATGGAGGGCCTTGAAAAGAGAGGGGAGAGAAGAAAAAGAGAGATTTTTGAAGTGAT
456 TGGCCAACCATGGAGGGCCTTGAAAAGAGAGGGGAGAGAAGAAAAAGAGAGATTTTTGAAGTGAT
133248 TTTGGAGAAAAAGAGTGAAAAGTGAAAAAAAAAAAAAAAANNNNNNNNNNTTAAAAAAAAAAAAA
521 TTTGGAGAAAAAGAGTGAAAAGTGAAAAAAAAAAAAAAAA----------TTAAAAAAAAAAAAA
133313 AA
576 AA
133315 AGAAATCCGAAAAGGCTCACCTTAAACCGATCAGCCACCATCGAACGGAGTCCCTTCGAGTTGTC
1 AGAAATCCGAAAAGGCTCACCTTAAACCGATCAGCCACCATCGAACGGAGTCCCTTCGAGTTGTC
133380 GTCAACACAGCCCCCAAATATCGTTGTCCTCGTGGTTCCAAAAATGACAGAATCAAGAAATGCAT
66 GTCAACACAGCCCCCAAATATCGTTGTCCTCGTGGTTCCAAAAATGACAGAATCAAGAAATGCAT
133445 TGAAATAGACTTAAAACAAAAATATATATATGAATAAGAAAACTAAACGAAAACTGATAAAAAGG
131 TGAAATAGACTTAAAACAAAAATATATATATGAATAAGAAAACTAAACGAAAACTGATAAAAAGG
133510 AAGAAAGAACATGAAAAAATTAAAACTTTTTCTTTGGATCTGGGTTTTCACTCCATATCTGAAAT
196 AAGAAAGAACATGAAAAAATTAAAACTTTTTCTTTGGATCTGGGTTTTCACTCCATATCTGAAAT
133575 TTTCAAAAAAAAAAAAATGGGATAAAAAGGAGAAAACTTTCGATGGTAATCGGCTTAGATTCGAG
261 TTTCAAAAAAAAAAAAATGGGATAAAAAGGAGAAAACTTTCGATGGTAATCGGCTTAGATTCGAG
133640 TTTTTTAGGGTTGATCTATGCTTTTAAAAAAATTATAAAAAAGAGAAGAAATTTTACCTTGGGCC
326 TTTTTTAGGGTTGATCTATGCTTTTAAAAAAATTATAAAAAAGAGAAGAAATTTTACCTTGGGCC
133705 CCCGTGCATGGCGACGACGGAGGCGACCGACGATGGCCAATGGACGGTAGGCCGAAGACGGAACT
391 CCCGTGCATGGCGACGACGGAGGCGACCGACGATGGCCAATGGACGGTAGGCCGAAGACGGAACT
133770 TGGCCAACCATGGAGGGCCTTGAAAAGAGAGGGGAGAGAAGAAAAAGAGAGATTTTTGAAGTGAT
456 TGGCCAACCATGGAGGGCCTTGAAAAGAGAGGGGAGAGAAGAAAAAGAGAGATTTTTGAAGTGAT
*
133835 TTTGGAGAAAAAGAGTGAAAAGTGANAAAAAAAAAA
521 TTTGGAGAAAAAGAGTGAAAAGTGAAAAAAAAAAAA
133871 GAGCTTAAAA
Statistics
Matches: 555, Mismatches: 1, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
587 555 1.00
ACGTcount: A:0.41, C:0.15, G:0.21, T:0.22
Consensus pattern (577 bp):
AGAAATCCGAAAAGGCTCACCTTAAACCGATCAGCCACCATCGAACGGAGTCCCTTCGAGTTGTC
GTCAACACAGCCCCCAAATATCGTTGTCCTCGTGGTTCCAAAAATGACAGAATCAAGAAATGCAT
TGAAATAGACTTAAAACAAAAATATATATATGAATAAGAAAACTAAACGAAAACTGATAAAAAGG
AAGAAAGAACATGAAAAAATTAAAACTTTTTCTTTGGATCTGGGTTTTCACTCCATATCTGAAAT
TTTCAAAAAAAAAAAAATGGGATAAAAAGGAGAAAACTTTCGATGGTAATCGGCTTAGATTCGAG
TTTTTTAGGGTTGATCTATGCTTTTAAAAAAATTATAAAAAAGAGAAGAAATTTTACCTTGGGCC
CCCGTGCATGGCGACGACGGAGGCGACCGACGATGGCCAATGGACGGTAGGCCGAAGACGGAACT
TGGCCAACCATGGAGGGCCTTGAAAAGAGAGGGGAGAGAAGAAAAAGAGAGATTTTTGAAGTGAT
TTTGGAGAAAAAGAGTGAAAAGTGAAAAAAAAAAAAAAAATTAAAAAAAAAAAAAAA
Found at i:134559 original size:58 final size:58
Alignment explanation
Indices: 134432--134583 Score: 157
Period size: 58 Copynumber: 2.6 Consensus size: 58
134422 TATTAAAATT
* * *
134432 TACATTTCCCCT-AAACTTCCAAAATTACCGTTTTAACCCCAAACTTTTCCAAAATCA
1 TACATTTACCCTCGAACTTCCAAAATTACCATTTTAACCCCAAACTTTTCCAAAATCA
* * * * * *
134489 TACTTTTGCCCTCGAACTTCCAAATTTACCAATTTTGACCCCGAAC-TTTCCAAAAATTA
1 TACATTTACCCTCGAACTTCCAAAATTACC-ATTTTAACCCCAAACTTTTCC-AAAATCA
* *
134548 T-CATTTACCCTCGAACATCTGAAAATTACCATTTTA
1 TACATTTACCCTCGAACTTC-CAAAATTACCATTTTA
134584 CCATCGGATA
Statistics
Matches: 77, Mismatches: 14, Indels: 7
0.79 0.14 0.07
Matches are distributed among these distances:
57 10 0.13
58 40 0.52
59 27 0.35
ACGTcount: A:0.33, C:0.29, G:0.05, T:0.34
Consensus pattern (58 bp):
TACATTTACCCTCGAACTTCCAAAATTACCATTTTAACCCCAAACTTTTCCAAAATCA
Found at i:134562 original size:29 final size:30
Alignment explanation
Indices: 134492--134875 Score: 243
Period size: 29 Copynumber: 13.3 Consensus size: 30
134482 AAAATCATAC
* *
134492 TTTTGCCCTCGAACT-TCC-AAATTTACCAA
1 TTTTACCCTCGAACTGTCCAAAAATTACC-A
* *
134521 TTTTGACCC-CGAACTTTCCAAAAATTATCA
1 TTTT-ACCCTCGAACTGTCCAAAAATTACCA
* **
134551 -TTTACCCTCGAAC-ATCTGAAAATTACCA
1 TTTTACCCTCGAACTGTCCAAAAATTACCA
* * * *
134579 TTTTACCATCGGA-TATCCAAAAATCA-CA
1 TTTTACCCTCGAACTGTCCAAAAATTACCA
* *
134607 TATTTGACCCT-AAACTTTCCAAAAATTACCA
1 T-TTT-ACCCTCGAACTGTCCAAAAATTACCA
* *
134638 TTTTACCTTCGAA-TGTCCAAAAATTACCG
1 TTTTACCCTCGAACTGTCCAAAAATTACCA
*
134667 TTTTACTCCT-GAAC-GTCCAAAAATTATCA
1 TTTTAC-CCTCGAACTGTCCAAAAATTACCA
** *
134696 TTTTACCCTC-AGGTGTCCAAAAATTACTA
1 TTTTACCCTCGAACTGTCCAAAAATTACCA
* *
134725 TTTTACCCCCGAAC-GTTCAAAAATTACCA
1 TTTTACCCTCGAACTGTCCAAAAATTACCA
* ** *
134754 TTTTGCTCC-C-ATGTGTCCAAAAATTACCG
1 TTTTAC-CCTCGAACTGTCCAAAAATTACCA
* *
134783 TTTTACCC-CTGAAC-GTCCCAAAATTACCT
1 TTTTACCCTC-GAACTGTCCAAAAATTACCA
* * * * *
134812 TTTTGCCCTCGAGC-ATCTAAAAATT-GCA
1 TTTTACCCTCGAACTGTCCAAAAATTACCA
** *
134840 TTTTTGCCTCGAACT-TTC-AAAATTACCA
1 TTTTACCCTCGAACTGTCCAAAAATTACCA
134868 TTTTACCC
1 TTTTACCC
134876 CTAGGCATCC
Statistics
Matches: 274, Mismatches: 58, Indels: 47
0.72 0.15 0.12
Matches are distributed among these distances:
27 6 0.02
28 47 0.17
29 177 0.65
30 34 0.12
31 10 0.04
ACGTcount: A:0.32, C:0.27, G:0.08, T:0.33
Consensus pattern (30 bp):
TTTTACCCTCGAACTGTCCAAAAATTACCA
Found at i:137906 original size:136 final size:136
Alignment explanation
Indices: 137658--137920 Score: 357
Period size: 136 Copynumber: 1.9 Consensus size: 136
137648 TTTAGTACTA
* * * *
137658 GAAAACACTATACAACATTTGACTGGAAGAACTTTAAATCCATAAAATTTAGAAATAAAGTATCT
1 GAAAACAATATACAACATGTAACTGGAAGAACTTGAAATCCATAAAATTTAGAAATAAAGTATCT
* * * *
137723 ATTATTTAGGGTTTTGAAAAAAAGAATAAATAACAAAAGGTTAAAAAAAATTTGAAATAAGACTA
66 ACTATTTAGGGCTTCGAAAAAAAGAAAAAATAACAAAAGGTTAAAAAAAATTTGAAATAAGACTA
137788 AAACTT
131 AAACTT
* *
137794 GAAAACAATATACAACATGTAACTGGAAGAACTTGAAATTCATAAAATTTAGGAATAAAGTAGT-
1 GAAAACAATATACAACATGTAACTGGAAGAACTTGAAATCCATAAAATTTAGAAATAAAGTA-TC
* * * * * **
137858 TGCTATTTAGGGCTTCGAAAAAAAGAAAAAATAAGAGAATGTTTAAAAATTTTTGAAATAAGA
65 TACTATTTAGGGCTTCGAAAAAAAGAAAAAATAACAAAAGGTTAAAAAAAATTTGAAATAAGA
137921 GAAGGTTTAA
Statistics
Matches: 109, Mismatches: 17, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
136 108 0.99
137 1 0.01
ACGTcount: A:0.51, C:0.08, G:0.14, T:0.27
Consensus pattern (136 bp):
GAAAACAATATACAACATGTAACTGGAAGAACTTGAAATCCATAAAATTTAGAAATAAAGTATCT
ACTATTTAGGGCTTCGAAAAAAAGAAAAAATAACAAAAGGTTAAAAAAAATTTGAAATAAGACTA
AAACTT
Found at i:142534 original size:30 final size:30
Alignment explanation
Indices: 142498--142690 Score: 189
Period size: 30 Copynumber: 6.4 Consensus size: 30
142488 AAAATGATAT
*
142498 TTTTTGGAAATTTTGGGGTTAAAAATGGAA
1 TTTTTGGAAATTTTGGGGTCAAAAATGGAA
*
142528 TTTTTGGAAGTTTTGAGGGTCAAAAATGGAA
1 TTTTTGGAAATTTTG-GGGTCAAAAATGGAA
* * *
142559 TTTTTTTGAAGTTTCAGGGGTCAAAAATGGAA
1 -TTTTTGGAAATTT-TGGGGTCAAAAATGGAA
* * *
142591 TTTTTGG-AAGTTTGGGG--GAAAATGAAA
1 TTTTTGGAAATTTTGGGGTCAAAAATGGAA
* * *
142618 ATTTTGGAAGTTTTAGGGTCAAAAATGGAA
1 TTTTTGGAAATTTTGGGGTCAAAAATGGAA
* *
142648 TTTTTAG-AAGTTTGAGGGT-AAAAATGGAA
1 TTTTTGGAAATTTTG-GGGTCAAAAATGGAA
142677 TTTTTGGATAATTT
1 TTTTTGGA-AATTT
142691 AGGGACCTTC
Statistics
Matches: 131, Mismatches: 23, Indels: 17
0.77 0.13 0.10
Matches are distributed among these distances:
27 14 0.11
28 7 0.05
29 24 0.18
30 34 0.26
31 24 0.18
32 27 0.21
33 1 0.01
ACGTcount: A:0.33, C:0.02, G:0.27, T:0.38
Consensus pattern (30 bp):
TTTTTGGAAATTTTGGGGTCAAAAATGGAA
Found at i:146436 original size:14 final size:15
Alignment explanation
Indices: 146419--146448 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
146409 TTATGAACAG
146419 AGATT-TATTTTGTA
1 AGATTATATTTTGTA
146433 AGATTATATTTTGTA
1 AGATTATATTTTGTA
146448 A
1 A
146449 TAAGATTATG
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 5 0.33
15 10 0.67
ACGTcount: A:0.33, C:0.00, G:0.13, T:0.53
Consensus pattern (15 bp):
AGATTATATTTTGTA
Found at i:149071 original size:30 final size:30
Alignment explanation
Indices: 149026--149082 Score: 78
Period size: 30 Copynumber: 1.9 Consensus size: 30
149016 CTGCTAGGCA
* **
149026 CATAACCCGAATACACTGGCACAAAGCTTG
1 CATAACCCAAATACACCAGCACAAAGCTTG
*
149056 CATAGCCCAAATACACCAGCACAAAGC
1 CATAACCCAAATACACCAGCACAAAGC
149083 CTGCTAGGCA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
30 23 1.00
ACGTcount: A:0.40, C:0.33, G:0.14, T:0.12
Consensus pattern (30 bp):
CATAACCCAAATACACCAGCACAAAGCTTG
Found at i:149194 original size:74 final size:74
Alignment explanation
Indices: 149065--149253 Score: 256
Period size: 74 Copynumber: 2.6 Consensus size: 74
149055 GCATAGCCCA
* * *
149065 AATACACCAGCACAAAGCCTGCTAGGCACACAACCTGAATACATCCGCAAAAAGCCTACTAGGCA
1 AATACACCGGCACAAAGCCTGCTAGGCACACAGCCTGAATACATCCGCAAAAAGCCTACTAAGCA
149130 CACAGCTT-G
66 CACAG-TTCG
* * ** *
149139 AATACACCGGCACAAAGCCTACTAGACACACAGCCTGAATACA-CCGACACGAAGCCTGCTAAGC
1 AATACACCGGCACAAAGCCTGCTAGGCACACAGCCTGAATACATCCG-CAAAAAGCCTACTAAGC
149203 ACACAGTTCG
65 ACACAGTTCG
* *
149213 AATACACCGGCACAAAGCCTGCTAGGCACATAGCCCGAATA
1 AATACACCGGCACAAAGCCTGCTAGGCACACAGCCTGAATA
149254 TATAGATGCA
Statistics
Matches: 101, Mismatches: 12, Indels: 4
0.86 0.10 0.03
Matches are distributed among these distances:
73 5 0.05
74 96 0.95
ACGTcount: A:0.37, C:0.33, G:0.17, T:0.13
Consensus pattern (74 bp):
AATACACCGGCACAAAGCCTGCTAGGCACACAGCCTGAATACATCCGCAAAAAGCCTACTAAGCA
CACAGTTCG
Found at i:149252 original size:37 final size:37
Alignment explanation
Indices: 149059--149253 Score: 221
Period size: 37 Copynumber: 5.3 Consensus size: 37
149049 AAGCTTGCAT
* *
149059 AGCCCAAATACACCAGCACAAAGCCTGCTAGGCACAC
1 AGCCCGAATACACCGGCACAAAGCCTGCTAGGCACAC
* * * *
149096 AACCTGAATACATCC-GCAAAAAGCCTACTAGGCACAC
1 AGCCCGAATACA-CCGGCACAAAGCCTGCTAGGCACAC
** * *
149133 AGCTTGAATACACCGGCACAAAGCCTACTAGACACAC
1 AGCCCGAATACACCGGCACAAAGCCTGCTAGGCACAC
* * * *
149170 AGCCTGAATACACCGACACGAAGCCTGCTAAGCACAC
1 AGCCCGAATACACCGGCACAAAGCCTGCTAGGCACAC
** *
149207 AGTTCGAATACACCGGCACAAAGCCTGCTAGGCACAT
1 AGCCCGAATACACCGGCACAAAGCCTGCTAGGCACAC
149244 AGCCCGAATA
1 AGCCCGAATA
149254 TATAGATGCA
Statistics
Matches: 132, Mismatches: 24, Indels: 4
0.82 0.15 0.03
Matches are distributed among these distances:
36 2 0.02
37 128 0.97
38 2 0.02
ACGTcount: A:0.37, C:0.33, G:0.17, T:0.12
Consensus pattern (37 bp):
AGCCCGAATACACCGGCACAAAGCCTGCTAGGCACAC
Found at i:151056 original size:28 final size:28
Alignment explanation
Indices: 151025--151085 Score: 79
Period size: 28 Copynumber: 2.2 Consensus size: 28
151015 AAAATGAGAC
*
151025 TTTGGACACCTAG-GGGTAAAATGGTAAT
1 TTTGGAC-CCTAGAGGGTAAAATGATAAT
* *
151053 TTTGGACTCTCGAGGGTAAAATGATAAT
1 TTTGGACCCTAGAGGGTAAAATGATAAT
151081 TTTGG
1 TTTGG
151086 GAAATTTTAG
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
27 3 0.10
28 26 0.90
ACGTcount: A:0.30, C:0.10, G:0.28, T:0.33
Consensus pattern (28 bp):
TTTGGACCCTAGAGGGTAAAATGATAAT
Found at i:151216 original size:29 final size:29
Alignment explanation
Indices: 151187--151475 Score: 256
Period size: 29 Copynumber: 9.9 Consensus size: 29
151177 ATCCGAGGGT
*
151187 AAAATGGTAATTTTTGAAAGTTTTGAGGTAA
1 AAAATGG-AATTTTTGAAAGTTTCGAGGT-A
151218 AAAATGGAATTTTTTGAAA--TTCGAGGATA
1 AAAATGGAA-TTTTTGAAAGTTTCGAGG-TA
* * *
151247 AAAATGGAATTTTGGAAAGTTT-AAGGGTC
1 AAAATGGAATTTTTGAAAGTTTCGA-GGTA
* *
151276 AAAATGGAATTATAGAAAG-TTCGAGGTA
1 AAAATGGAATTTTTGAAAGTTTCGAGGTA
*
151304 AAAATGGAATTTTGGAAAGTTTCGAGGTCA
1 AAAATGGAATTTTTGAAAGTTTCGAGGT-A
* * *
151334 AAAATAGAATTTTTGGAAGTTT-GGGGT-
1 AAAATGGAATTTTTGAAAGTTTCGAGGTA
* *
151361 AAAATGGTAATTTTT-AGATGTTT-TAGGTCA
1 AAAATGG-AATTTTTGA-AAGTTTCGAGGT-A
* * *
151391 AAAATGGAATTTTTGGAAGTTTAGGGGT-
1 AAAATGGAATTTTTGAAAGTTTCGAGGTA
*
151419 AAAATGATAATTTTTGAAAGTTTCGAGGTTA
1 AAAATG-GAATTTTTGAAAGTTTCGAGG-TA
*
151450 AAAATGGAATTTTTGGAAG-TTCGAGG
1 AAAATGGAATTTTTGAAAGTTTCGAGG
151476 GTCAAAACAT
Statistics
Matches: 212, Mismatches: 29, Indels: 36
0.77 0.10 0.13
Matches are distributed among these distances:
27 6 0.03
28 51 0.24
29 84 0.40
30 49 0.23
31 22 0.10
ACGTcount: A:0.37, C:0.03, G:0.25, T:0.35
Consensus pattern (29 bp):
AAAATGGAATTTTTGAAAGTTTCGAGGTA
Found at i:151324 original size:116 final size:117
Alignment explanation
Indices: 151184--151505 Score: 345
Period size: 116 Copynumber: 2.8 Consensus size: 117
151174 GACATCCGAG
* * * *
151184 GGTAAAATGGTAATTTTTGAAAGTTTTGAGGTAAAAAATGGAATTTTTTGAAATTCGAGGATAAA
1 GGTAAAATGG-AATTTTTGAAAGTTTCGAGGTAAAAAATGGAATTTTTGGAAGTTCGAGGGTAAA
*
151249 AATGGAATTTTGGAAAGTTTAAGGGTC-AAAATGGAATTATAGAAAG-TTCGA
65 AATGGAATTTTGGAAAGTTTAAGGGTCAAAAATGGAATTATAGAAAGTTTAGA
* * * *
151300 GGTAAAAATGGAATTTTGGAAAGTTTCGAGGTCAAAAATAGAATTTTTGGAAGTTTG-GGGT-AA
1 GGT-AAAATGGAATTTTTGAAAGTTTCGAGGTAAAAAATGGAATTTTTGGAAGTTCGAGGGTAAA
* * * * * * *
151363 AATGGTAATTTT-TAGATGTTTTA-GGTCAAAAATGGAATTTTTGGAAGTTTAGG
65 AATGG-AATTTTGGA-AAGTTTAAGGGTCAAAAATGGAATTATAGAAAGTTTAGA
* *
151416 GGTAAAATGATAATTTTTGAAAGTTTCGAGGTTAAAAATGGAATTTTTGGAAGTTCGAGGGTCAA
1 GGTAAAATG-GAATTTTTGAAAGTTTCGAGGTAAAAAATGGAATTTTTGGAAGTTCGAGGGT-AA
*
151481 AACAT--AATTTTTGGACAGTTTAAGG
64 AA-ATGGAA-TTTTGGAAAGTTTAAGG
151506 ACCTTTAGAG
Statistics
Matches: 168, Mismatches: 25, Indels: 23
0.78 0.12 0.11
Matches are distributed among these distances:
114 12 0.07
115 37 0.22
116 90 0.54
117 13 0.08
118 9 0.05
119 5 0.03
120 2 0.01
ACGTcount: A:0.37, C:0.03, G:0.25, T:0.34
Consensus pattern (117 bp):
GGTAAAATGGAATTTTTGAAAGTTTCGAGGTAAAAAATGGAATTTTTGGAAGTTCGAGGGTAAAA
ATGGAATTTTGGAAAGTTTAAGGGTCAAAAATGGAATTATAGAAAGTTTAGA
Found at i:151482 original size:29 final size:29
Alignment explanation
Indices: 151158--151500 Score: 228
Period size: 29 Copynumber: 11.8 Consensus size: 29
151148 AATCAAGATC
* * *
151158 AAAAACGGAAATTTTGGACA-TCCGAGGGT
1 AAAAATGGAATTTTTGGA-AGTTCGAGGGT
* *
151187 -AAAATGGTAATTTTTGAAAGTTTTGA-GGT
1 AAAAATGG-AATTTTTGGAAG-TTCGAGGGT
* * *
151216 AAAAAATGGAATTTTTTGAAATTCGAGGAT
1 -AAAAATGGAATTTTTGGAAGTTCGAGGGT
**
151246 AAAAATGGAA-TTTTGGAAAGTTTAAGGGT
1 AAAAATGGAATTTTTGG-AAGTTCGAGGGT
* * * *
151275 CAAAATGGAATTATAGAAAGTTCGA-GGT
1 AAAAATGGAATTTTTGGAAGTTCGAGGGT
151303 AAAAATGGAA-TTTTGGAAAGTTTCGA-GGT
1 AAAAATGGAATTTTTGG-AAG-TTCGAGGGT
* *
151332 CAAAAATAGAATTTTTGGAAGTTTG-GGGT
1 -AAAAATGGAATTTTTGGAAGTTCGAGGGT
* * **
151361 -AAAATGGTAATTTTTAGATGTTTTA-GGT
1 AAAAATGG-AATTTTTGGAAGTTCGAGGGT
*
151389 CAAAAATGGAATTTTTGGAAGTT-TAGGGGT
1 -AAAAATGGAATTTTTGGAAGTTCGA-GGGT
* * *
151419 -AAAATGATAATTTTTGAAAGTTTCGAGGTT
1 AAAAATG-GAATTTTTGGAAG-TTCGAGGGT
151449 AAAAATGGAATTTTTGGAAGTTCGAGGGT
1 AAAAATGGAATTTTTGGAAGTTCGAGGGT
151478 CAAAACAT--AATTTTTGGACAGTT
1 -AAAA-ATGGAATTTTTGGA-AGTT
151501 TAAGGACCTT
Statistics
Matches: 248, Mismatches: 40, Indels: 51
0.73 0.12 0.15
Matches are distributed among these distances:
27 9 0.04
28 51 0.21
29 103 0.42
30 63 0.25
31 22 0.09
ACGTcount: A:0.37, C:0.04, G:0.25, T:0.34
Consensus pattern (29 bp):
AAAAATGGAATTTTTGGAAGTTCGAGGGT
Found at i:153423 original size:17 final size:18
Alignment explanation
Indices: 153401--153512 Score: 110
Period size: 17 Copynumber: 6.5 Consensus size: 18
153391 GGCATTATTT
*
153401 ATTTTAAATTTATAA-AA
1 ATTTTAAATTTAAAATAA
153418 ATTTTAAATTTAAAATAA
1 ATTTTAAATTTAAAATAA
* *
153436 A-TTTAAACTTAAATTAA
1 ATTTTAAATTTAAAATAA
*
153453 A-TTCAAATTTAAAATAA
1 ATTTTAAATTTAAAATAA
* *
153470 A-TCTAAATTTAAAACAA
1 ATTTTAAATTTAAAATAA
153487 A-TTT-AATCTTAAAATAA
1 ATTTTAAAT-TTAAAATAA
*
153504 ATTTAAAAT
1 ATTTTAAAT
153513 AGACCCGATC
Statistics
Matches: 79, Mismatches: 12, Indels: 6
0.81 0.12 0.06
Matches are distributed among these distances:
16 3 0.04
17 68 0.86
18 5 0.06
19 3 0.04
ACGTcount: A:0.55, C:0.04, G:0.00, T:0.40
Consensus pattern (18 bp):
ATTTTAAATTTAAAATAA
Found at i:153429 original size:6 final size:6
Alignment explanation
Indices: 153420--153482 Score: 60
Period size: 6 Copynumber: 11.0 Consensus size: 6
153410 TTATAAAAAT
* * *
153420 TTTAAA TTTAAA -ATAAA TTTAAA CTTAAA -TTAAA TTCAAA TTTAAA
1 TTTAAA TTTAAA TTTAAA TTTAAA TTTAAA TTTAAA TTTAAA TTTAAA
* *
153466 -ATAAA TCTAAA TTTAAA
1 TTTAAA TTTAAA TTTAAA
153483 ACAAATTTAA
Statistics
Matches: 46, Mismatches: 8, Indels: 6
0.77 0.13 0.10
Matches are distributed among these distances:
5 13 0.28
6 33 0.72
ACGTcount: A:0.56, C:0.05, G:0.00, T:0.40
Consensus pattern (6 bp):
TTTAAA
Found at i:153436 original size:11 final size:11
Alignment explanation
Indices: 153422--153513 Score: 62
Period size: 11 Copynumber: 8.2 Consensus size: 11
153412 ATAAAAATTT
153422 TAAATTTAAAA
1 TAAATTTAAAA
*
153433 TAAATTTAAACT
1 TAAATTTAAA-A
*
153445 TAAA-TTAAAT
1 TAAATTTAAAA
153455 TCAAATTTAAAA
1 T-AAATTTAAAA
* *
153467 TAAATCTAAATT
1 TAAATTTAAA-A
** *
153479 TAAA-ACAAAT
1 TAAATTTAAAA
*
153489 TTAATCTTAAAA
1 TAAAT-TTAAAA
153501 TAAATTTAAAA
1 TAAATTTAAAA
153512 TA
1 TA
153514 GACCCGATCA
Statistics
Matches: 64, Mismatches: 11, Indels: 12
0.74 0.13 0.14
Matches are distributed among these distances:
10 6 0.09
11 37 0.58
12 21 0.33
ACGTcount: A:0.58, C:0.05, G:0.00, T:0.37
Consensus pattern (11 bp):
TAAATTTAAAA
Found at i:153476 original size:23 final size:23
Alignment explanation
Indices: 153434--153478 Score: 65
Period size: 23 Copynumber: 2.0 Consensus size: 23
153424 AATTTAAAAT
*
153434 AAATTTAAACTTAAATTAAATTC
1 AAATTTAAACATAAATTAAATTC
153457 AAATTTAAA-ATAAATCTAAATT
1 AAATTTAAACATAAAT-TAAATT
153479 TAAAACAAAT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
22 5 0.25
23 15 0.75
ACGTcount: A:0.56, C:0.07, G:0.00, T:0.38
Consensus pattern (23 bp):
AAATTTAAACATAAATTAAATTC
Found at i:154243 original size:4 final size:4
Alignment explanation
Indices: 154229--154260 Score: 55
Period size: 4 Copynumber: 7.8 Consensus size: 4
154219 GTTGTTGGGA
154229 ATGT GATGT ATGT ATGT ATGT ATGT ATGT ATG
1 ATGT -ATGT ATGT ATGT ATGT ATGT ATGT ATG
154261 GGATTGAGAA
Statistics
Matches: 27, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
4 23 0.85
5 4 0.15
ACGTcount: A:0.25, C:0.00, G:0.28, T:0.47
Consensus pattern (4 bp):
ATGT
Found at i:159012 original size:18 final size:18
Alignment explanation
Indices: 158971--159013 Score: 50
Period size: 18 Copynumber: 2.4 Consensus size: 18
158961 CTCATTTTAT
*
158971 AAAAAAAAAATTAAAATT
1 AAAAAAAAAATTAAAATG
** *
158989 TTAAAAAAAATTAATATG
1 AAAAAAAAAATTAAAATG
159007 AAAAAAA
1 AAAAAAA
159014 TCAAAAGTCG
Statistics
Matches: 19, Mismatches: 6, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.74, C:0.00, G:0.02, T:0.23
Consensus pattern (18 bp):
AAAAAAAAAATTAAAATG
Done.