genome.fa.s15307.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01015307.1 Kokia drynarioides strain JFW-HI SEQ_130352, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  395823

Tables:   1   

This is table  1  of  1  ( 116 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11665--11762	47	2.1	47	90	3	153	21	16	33	28	1.95
15306--15336	15	2.1	15	94	5	55	54	6	0	38	1.26
17687--17715	14	2.0	15	93	6	51	55	3	0	41	1.17
21558--21602	18	2.5	18	88	0	72	42	15	8	33	1.78
22841--22968	44	2.9	44	95	0	220	32	17	20	29	1.95
41339--41380	17	2.7	15	77	22	50	64	2	0	33	1.07
41873--41914	15	2.6	16	85	11	59	35	0	0	64	0.94
41902--41970	28	2.5	28	83	4	86	46	1	4	47	1.31
53120--53162	20	2.0	22	82	13	54	44	2	0	53	1.13
53252--53276	8	3.1	8	100	0	50	12	0	0	88	0.53
53617--53677	4	15.2	4	78	13	63	70	0	29	0	0.88
53617--53695	25	3.2	25	77	14	83	69	0	30	0	0.89
53617--53677	13	5.1	12	80	11	63	70	0	29	0	0.88
53648--53695	18	2.5	19	83	13	62	64	0	35	0	0.94
53869--53893	12	2.1	12	100	0	50	48	0	0	52	1.00
54048--54090	21	2.1	20	82	4	50	25	2	16	55	1.53
54569--54608	12	3.0	14	78	14	57	62	5	0	32	1.17
56537--56671	45	3.0	45	87	0	189	34	26	20	18	1.96
56938--56991	14	3.9	14	79	11	58	50	25	1	22	1.59
56931--57004	28	2.6	27	83	12	87	48	27	4	20	1.67
58572--58670	30	3.3	30	68	13	96	54	10	0	35	1.34
58572--58621	16	3.2	16	71	21	52	60	6	0	34	1.21
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58604--58709	29	3.6	28	68	12	79	50	13	0	35	1.48
58574--58707	59	2.3	59	93	0	232	52	11	0	34	1.43
59064--59100	18	2.1	18	94	0	65	24	21	24	29	1.99
59955--60039	43	2.0	43	86	4	118	31	10	10	47	1.72
60722--60764	21	2.0	21	90	0	68	23	32	13	30	1.93
64071--64113	19	2.2	20	84	12	54	65	0	2	32	1.06
64166--64234	4	17.0	4	75	8	59	0	31	0	68	0.90
64206--64233	13	2.2	13	100	0	56	0	21	0	78	0.75
67546--67585	2	20.0	2	100	0	80	50	0	0	50	1.00
71375--71461	45	2.0	43	84	8	113	50	16	3	29	1.61
71667--71745	27	3.0	25	72	17	61	41	2	1	54	1.22
72340--72378	19	2.1	19	85	4	53	38	2	2	56	1.27
73228--73261	3	11.3	3	100	0	68	67	0	0	32	0.91
79577--79631	28	2.0	28	88	0	83	29	20	25	25	1.99
82904--82972	27	2.6	28	78	13	74	46	1	0	52	1.09
82907--82972	26	2.5	27	79	15	75	46	1	0	51	1.10
83633--83736	29	3.5	28	66	14	75	26	14	12	46	1.80
83575--83731	60	2.6	60	81	6	176	26	13	12	48	1.77
87530--87574	24	2.0	24	86	8	67	57	11	11	20	1.63
90953--91017	24	2.7	23	75	13	69	53	4	6	35	1.46
95219--95287	9	8.0	8	71	25	52	31	0	0	68	0.90
95242--95290	9	5.2	9	85	4	62	34	0	0	65	0.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
95229--95287	29	2.1	28	90	3	91	33	0	0	66	0.92
97743--97830	26	3.4	26	84	6	108	34	21	15	28	1.94
101314--101359	24	1.9	24	82	8	58	36	23	15	23	1.93
106954--107159	95	2.2	94	78	6	218	43	12	14	29	1.82
111341--111479	71	2.0	71	88	2	208	35	24	7	31	1.84
111504--111655	76	2.0	76	89	0	232	25	28	13	32	1.94
119206--119260	18	3.1	18	81	0	65	36	32	20	10	1.87
119727--119769	6	6.8	6	89	10	68	79	0	20	0	0.74
124724--124782	27	2.1	28	81	9	68	33	10	1	54	1.44
127431--127577	42	3.5	42	85	0	159	35	24	14	25	1.94
134112--134174	19	3.3	19	66	16	58	39	31	3	25	1.71
134104--134180	38	2.0	38	100	0	154	38	32	5	23	1.77
147402--147436	14	2.5	14	90	0	52	45	2	17	34	1.63
147827--147865	19	2.1	19	85	0	51	51	0	2	46	1.14
149593--149654	20	3.2	20	79	6	74	64	3	0	32	1.09
149601--149645	19	2.3	20	88	3	65	66	2	0	31	1.04
152690--152867	64	2.9	61	81	7	209	25	19	8	46	1.78
153061--153136	29	2.5	31	78	6	84	48	9	14	27	1.74
153006--153187	88	2.1	89	80	7	201	46	12	15	25	1.81
155892--155932	21	2.0	21	85	4	57	36	2	0	60	1.10
161453--161497	14	3.4	14	75	12	58	35	0	8	55	1.31
165370--165430	22	2.8	22	87	7	81	72	1	11	14	1.20
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
165396--165425	15	1.9	16	93	6	53	70	0	13	16	1.18
192405--192474	37	1.9	37	91	8	117	37	5	20	37	1.76
195529--195620	45	2.0	45	100	0	184	35	21	18	23	1.95
209742--209807	30	2.2	31	83	2	80	27	22	16	33	1.96
209832--209942	58	1.9	59	90	1	179	39	21	18	19	1.92
214522--214579	2	29.0	2	96	0	107	50	0	48	1	1.11
219375--219436	32	1.9	32	100	0	124	48	20	6	24	1.73
223486--223641	78	2.0	78	98	0	303	35	33	3	28	1.73
224789--224836	24	2.0	24	83	0	60	60	2	4	33	1.27
225990--226040	27	1.9	27	88	4	77	58	1	1	37	1.20
237346--237409	27	2.4	27	89	0	92	25	34	20	20	1.96
237816--237852	13	2.7	14	91	4	58	48	0	8	43	1.32
238316--238362	15	2.8	16	73	20	51	42	0	2	55	1.12
238392--238428	16	2.3	16	86	13	58	40	0	0	59	0.97
238432--238506	26	2.9	25	75	18	73	53	0	2	44	1.14
239241--239288	24	1.9	26	84	16	66	45	0	22	31	1.53
239351--239521	23	7.3	23	80	9	136	11	23	24	40	1.88
241051--241115	3	21.3	3	96	3	121	33	0	0	66	0.92
244769--244807	8	4.8	8	83	3	51	82	0	15	2	0.79
244913--244967	27	2.0	27	92	0	92	40	1	5	52	1.35
259457--259558	32	3.2	32	62	18	75	30	27	17	24	1.97
259416--259608	65	3.0	65	82	1	244	30	27	18	23	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
278468--278591	61	2.0	61	95	0	221	37	37	9	15	1.80
286888--287043	80	2.0	80	79	5	172	51	15	7	25	1.70
294916--294942	3	9.0	3	100	0	54	66	0	0	33	0.92
295109--295146	5	7.6	5	93	0	67	0	60	0	39	0.97
297555--297612	24	2.4	24	97	0	107	46	12	22	18	1.82
301521--301553	2	16.5	2	100	0	66	48	0	0	51	1.00
303522--303554	15	2.3	15	89	5	50	69	0	3	27	1.03
303522--303571	14	3.7	14	72	20	52	70	2	2	26	1.09
303568--303600	16	2.0	17	88	5	50	45	0	3	51	1.16
307937--307964	4	7.0	4	100	0	56	0	25	0	75	0.81
310468--310529	31	2.0	30	81	9	72	37	3	8	51	1.48
318107--318150	23	1.9	23	90	0	70	22	20	15	40	1.90
318276--318335	25	2.4	25	82	0	66	33	6	16	43	1.74
318291--318343	25	2.1	25	82	0	61	30	7	16	45	1.75
323516--323569	21	2.5	22	70	8	58	20	22	20	37	1.95
332712--332768	30	1.9	30	85	7	80	49	5	1	43	1.35
332816--332899	39	2.2	39	91	0	132	28	7	10	53	1.62
352312--352337	9	2.9	9	100	0	52	19	0	0	80	0.71
364196--364276	3	26.0	3	86	7	108	67	1	1	29	1.06
365585--365801	29	7.5	28	67	16	104	30	24	8	35	1.85
365411--365631	114	1.9	117	80	4	261	34	23	2	40	1.67
365576--365792	58	3.8	57	81	7	244	30	25	8	35	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
365410--365772	29	12.6	29	66	16	110	33	23	4	38	1.74
367614--367648	18	1.9	18	88	0	52	25	14	45	14	1.82
367836--367865	15	1.9	16	93	6	53	10	0	20	70	1.16
368744--368770	2	13.5	2	100	0	54	51	0	0	48	1.00
369540--369569	2	15.0	2	100	0	60	50	0	0	50	1.00
376046--376083	18	2.0	20	90	10	62	28	0	2	68	1.03

Tables:   1

The End!