genome.fa.s15311.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01015311.1 Kokia drynarioides strain JFW-HI SEQ_130356, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  296063

Tables:   1   

This is table  1  of  1  ( 89 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1570--1615	15	3.1	15	73	17	51	54	4	8	32	1.51
12342--12385	21	2.0	20	83	12	52	54	6	2	36	1.40
19988--20021	17	2.0	17	88	0	50	47	5	2	44	1.42
29800--29825	6	4.3	6	100	0	52	15	50	15	19	1.79
35140--35169	15	2.0	15	93	0	51	50	0	0	50	1.00
35139--35180	18	2.4	18	88	4	59	52	0	0	47	1.00
35239--35271	17	1.9	17	93	0	57	42	0	6	51	1.26
36818--36895	31	2.6	31	89	4	124	29	16	10	43	1.81
36760--36950	88	2.1	90	84	3	244	24	16	13	45	1.83
39115--39165	23	2.2	23	82	6	59	47	1	5	45	1.38
39310--39365	28	1.9	28	85	7	76	57	7	3	32	1.43
40130--40281	30	5.0	30	80	4	162	21	11	24	42	1.86
54893--55046	40	3.8	40	79	5	132	29	25	19	25	1.99
60956--61026	36	2.0	35	81	10	81	42	2	36	18	1.65
61701--61775	24	3.2	24	69	14	57	37	9	14	38	1.79
62645--62709	29	2.2	29	86	10	89	43	13	6	36	1.70
62806--62863	22	2.7	23	82	15	70	25	1	6	65	1.27
66393--66418	12	2.2	12	100	0	52	69	0	0	30	0.89
66389--66427	16	2.5	15	84	12	51	71	0	0	28	0.86
70638--70816	24	7.5	24	86	3	211	27	22	21	27	1.99
70638--70812	48	3.6	48	88	0	251	27	22	21	28	1.99
70638--70814	72	2.5	72	88	0	246	27	22	21	28	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
73427--73564	26	5.2	26	79	10	127	26	23	15	34	1.95
73402--73564	27	6.1	26	78	12	152	26	23	15	33	1.95
73427--73564	53	2.6	56	78	13	148	26	23	15	34	1.95
75531--75678	73	2.0	73	94	0	260	43	14	8	33	1.75
75918--75997	27	3.0	27	76	7	90	35	12	21	31	1.90
79527--79725	100	2.0	100	95	0	362	37	24	13	25	1.91
82186--82425	51	4.6	51	83	4	268	33	14	23	29	1.94
89652--89704	22	2.3	23	81	12	65	28	1	9	60	1.38
92488--92524	18	2.1	18	100	0	74	18	5	16	59	1.55
110220--110278	24	2.4	24	75	13	57	52	5	3	38	1.40
123853--123877	2	12.5	2	100	0	50	48	0	0	52	1.00
123915--123951	5	7.4	5	88	11	58	78	0	0	21	0.75
132561--132711	58	2.6	59	85	6	200	54	2	0	41	1.19
134295--134333	7	5.6	7	96	0	69	46	0	53	0	1.00
138719--139028	53	5.6	53	82	9	372	36	20	15	28	1.93
138866--138891	12	2.2	12	100	0	52	42	7	15	34	1.75
138813--138944	65	2.0	65	98	0	255	36	19	15	28	1.93
138760--138997	118	2.0	118	93	0	404	36	19	15	28	1.92
138719--139028	171	1.8	170	88	2	478	36	20	15	28	1.93
139756--139794	20	2.1	18	86	13	53	25	15	0	58	1.37
141304--141497	50	3.9	49	80	3	219	35	12	27	24	1.92
141304--141510	49	4.2	49	80	3	220	36	12	27	24	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
141303--141510	99	2.1	99	90	2	330	36	12	26	24	1.91
142137--142171	4	8.2	4	87	12	52	25	0	0	74	0.82
159590--159619	15	2.1	14	93	6	51	13	10	6	70	1.34
161421--161463	16	2.8	16	96	3	79	48	4	41	4	1.44
163572--163605	13	2.6	13	90	0	50	32	0	26	41	1.56
166275--166442	45	3.7	45	81	0	183	43	14	21	20	1.87
178802--179014	67	3.1	66	65	17	155	46	5	5	42	1.51
178777--179330	138	4.0	138	90	1	853	46	5	7	41	1.53
178777--179330	274	2.0	275	90	0	858	46	5	7	41	1.53
179318--179442	62	2.0	63	85	4	173	36	12	5	44	1.66
190803--190855	26	2.0	26	100	0	106	37	3	26	32	1.74
193405--193439	2	17.5	2	100	0	70	51	0	0	48	1.00
201335--201462	63	2.0	64	85	7	172	27	17	6	48	1.71
202491--202682	96	2.0	96	85	8	257	35	13	20	30	1.91
203383--203785	29	13.8	29	81	10	378	32	2	29	34	1.73
203265--203790	59	9.0	59	80	11	287	33	3	28	34	1.75
203265--203723	117	3.9	116	80	9	309	33	3	29	33	1.75
203382--203782	59	6.8	58	84	10	426	32	2	29	35	1.73
204791--204878	6	15.3	6	68	17	53	50	4	0	45	1.22
204793--204873	17	4.8	17	87	0	108	51	3	0	44	1.19
207703--207730	2	14.0	2	100	0	56	50	0	50	0	1.00
208972--209064	46	2.0	47	91	2	152	36	22	12	27	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
209925--210001	19	4.1	18	69	12	57	40	2	3	53	1.33
214633--214673	17	2.4	17	80	15	57	51	12	14	21	1.75
215968--216017	24	2.1	24	92	0	82	32	14	18	36	1.90
222480--222793	156	2.0	156	94	0	556	19	25	19	35	1.95
222636--223077	231	1.9	228	93	2	769	22	25	18	33	1.97
228345--228417	31	2.4	31	86	2	94	27	16	12	43	1.83
228297--228471	89	2.0	89	81	8	205	26	14	12	46	1.81
228610--228745	59	2.3	60	78	6	152	50	11	13	23	1.75
233936--234021	31	2.9	28	79	11	82	56	2	4	36	1.33
235303--235360	23	2.4	23	75	13	55	56	5	0	37	1.21
240544--240602	24	2.5	24	85	0	82	50	11	11	25	1.73
244611--244654	21	2.1	21	83	8	54	47	0	4	47	1.22
249527--249561	14	2.5	14	90	9	54	45	0	0	54	0.99
265438--265604	58	2.9	58	83	7	214	53	1	1	43	1.19
265445--265548	26	3.8	26	68	18	75	54	1	0	43	1.11
265502--265581	29	2.8	29	74	10	83	50	3	0	46	1.19
271617--271682	20	3.2	20	73	14	64	69	7	3	19	1.26
280585--280757	85	2.0	85	100	0	346	35	10	18	35	1.85
286316--286363	2	24.5	2	91	4	71	52	4	0	43	1.20
286709--286738	2	15.0	2	92	0	51	50	3	0	46	1.18
291829--291865	6	6.5	6	93	6	60	67	0	0	32	0.91
292567--292598	16	1.9	16	93	6	55	34	0	0	65	0.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
293350--293680	185	1.8	181	81	4	416	40	9	9	40	1.71

Tables:   1

The End!