genome.fa.s15312.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01015312.1 Kokia drynarioides strain JFW-HI SEQ_130357, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  167290

Tables:   1   

This is table  1  of  1  ( 77 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5834--5940	50	2.1	50	88	8	164	47	8	10	33	1.68
6633--6665	9	3.7	9	91	0	57	21	39	6	33	1.78
6633--6667	18	1.9	18	100	0	70	22	40	5	31	1.78
8220--8286	32	2.1	32	83	5	82	50	14	7	26	1.70
13429--13502	19	4.0	18	79	8	78	33	16	25	24	1.95
13429--13511	37	2.2	38	84	2	105	32	15	25	26	1.96
24060--24275	30	7.3	29	72	11	98	35	3	27	32	1.75
24081--24257	60	3.0	58	80	6	185	35	4	27	32	1.77
25102--25158	27	2.1	27	96	0	105	19	14	47	19	1.82
26327--26788	49	9.3	49	76	5	401	14	32	18	34	1.92
26327--27034	198	3.7	198	79	7	664	15	32	17	34	1.92
26327--26788	99	4.7	98	80	5	536	14	32	18	34	1.92
26704--26866	84	1.9	84	82	4	204	14	29	21	34	1.92
26819--26993	49	3.6	49	78	3	138	15	33	16	34	1.90
27982--28054	8	8.9	8	75	14	60	2	19	0	78	0.88
27949--28068	33	3.6	33	77	14	106	4	18	0	77	0.92
27968--28053	26	3.5	25	80	6	86	3	19	0	76	0.92
27982--28054	17	4.4	16	75	16	60	2	19	0	78	0.88
27983--28063	25	3.5	23	69	22	55	2	18	0	79	0.85
32873--33089	30	7.2	30	74	4	143	35	2	28	33	1.72
32873--33089	60	3.6	59	76	7	197	35	2	28	33	1.72
39145--39217	30	2.4	31	84	8	89	30	0	0	69	0.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39168--39219	23	2.4	21	84	12	70	30	0	0	69	0.89
39168--39211	23	2.0	22	91	8	72	31	0	0	68	0.90
43384--43416	17	2.0	17	94	5	59	48	30	0	21	1.50
43522--43602	13	5.9	15	73	16	68	19	20	22	37	1.95
43522--43602	20	4.0	20	83	4	83	19	20	22	37	1.95
43522--43601	7	11.7	7	76	10	58	20	21	22	36	1.95
43515--43601	27	3.2	27	85	4	95	20	20	21	36	1.95
44710--44755	22	2.1	21	84	15	58	23	0	17	58	1.38
48032--48110	30	2.7	29	84	3	95	31	5	29	34	1.79
47987--48338	29	12.2	29	71	12	158	32	5	26	34	1.81
48240--48396	85	1.8	86	81	6	194	33	3	26	37	1.72
47981--48606	59	10.8	56	71	13	233	33	4	25	35	1.78
48239--48453	29	7.5	29	73	14	128	33	3	26	36	1.75
48477--48610	61	2.2	60	89	2	207	33	2	21	41	1.68
48353--48607	30	8.6	30	76	10	163	35	3	23	38	1.71
61319--61415	28	3.5	27	72	16	74	36	6	23	34	1.80
61462--61837	30	12.6	30	77	9	240	35	3	23	37	1.73
61754--61845	29	3.1	29	74	9	87	40	5	20	33	1.76
63555--63625	17	4.2	17	75	0	61	54	8	2	33	1.45
63555--63621	34	2.0	33	82	11	82	53	8	2	34	1.47
67897--67944	24	1.9	26	84	16	66	45	0	22	31	1.53
68007--68078	23	3.5	22	63	26	57	11	20	20	47	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
68241--68267	12	2.2	12	100	0	54	51	0	22	25	1.48
72462--72493	2	16.0	2	100	0	64	50	0	0	50	1.00
85291--85319	9	3.2	9	100	0	58	51	0	0	48	1.00
86446--86494	24	2.0	24	100	0	98	20	26	12	40	1.87
87809--87859	22	2.3	22	86	6	68	45	5	15	33	1.71
99788--99863	23	3.3	23	71	14	68	34	5	5	55	1.45
101291--101331	16	2.5	17	76	11	50	36	0	0	63	0.95
102913--102958	18	2.6	18	100	0	92	43	26	6	23	1.78
111798--111836	18	2.2	18	85	0	51	2	7	30	58	1.39
114043--114094	19	2.6	20	82	11	54	28	1	3	65	1.21
114574--114614	18	2.2	20	86	8	59	17	2	7	73	1.17
124315--124356	22	1.9	22	85	0	57	40	0	9	50	1.35
125695--126062	29	12.6	29	76	9	266	33	2	26	36	1.72
125723--126037	58	5.4	59	78	7	322	33	1	26	37	1.68
125716--126037	117	2.8	114	86	7	423	33	2	27	36	1.69
127801--127848	23	2.1	23	92	7	80	52	2	0	45	1.12
127814--127893	17	4.7	17	85	0	115	52	3	0	43	1.19
127801--127858	10	5.8	10	74	22	59	53	1	0	44	1.10
127806--127863	23	2.5	23	86	5	73	55	1	0	43	1.10
127808--127893	6	15.0	6	72	18	67	52	3	0	44	1.18
131898--131935	18	2.1	18	85	9	51	52	15	7	23	1.69
133886--133927	17	2.4	17	80	15	50	7	4	16	71	1.26
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
135031--135070	17	2.5	17	84	8	57	45	0	0	55	0.99
135084--135146	30	2.1	30	82	14	76	49	3	1	46	1.27
146668--146725	29	2.0	29	100	0	116	24	17	24	34	1.96
150756--150809	11	4.9	11	100	0	108	7	18	9	64	1.45
150756--150817	22	2.8	22	90	4	72	9	19	9	61	1.54
151138--151173	16	2.3	15	86	9	54	36	0	2	61	1.11
153290--153330	14	2.7	16	81	14	59	48	0	0	51	1.00
154823--154850	6	4.7	6	100	0	56	17	14	32	35	1.90
159384--159439	12	4.5	12	72	16	51	53	3	1	41	1.29
159380--159441	31	2.0	30	87	9	90	54	6	1	37	1.36
161654--161707	28	2.0	27	88	3	81	18	0	3	77	0.91

Tables:   1

The End!