genome.fa.s15313.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01015313.1 Kokia drynarioides strain JFW-HI SEQ_130358, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  65849

Tables:   1   

This is table  1  of  1  ( 34 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1--30	2	15.0	2	100	0	60	50	0	0	50	1.00
932--1036	10	11.2	9	71	18	54	64	0	2	32	1.08
957--1018	19	3.3	18	72	14	63	61	0	1	37	1.06
956--1008	28	1.9	27	85	11	72	60	0	1	37	1.08
957--1066	38	2.9	37	82	10	116	64	0	1	32	1.10
1233--1427	9	21.0	9	66	21	73	31	4	1	62	1.23
1233--1291	10	6.1	10	76	20	63	32	1	1	64	1.13
1235--1308	20	3.8	20	74	16	73	32	4	2	60	1.29
1233--1362	37	3.5	39	75	15	114	32	3	1	63	1.19
1296--1374	27	2.9	28	83	3	99	34	1	0	64	1.02
8710--8750	20	2.0	20	100	0	82	43	19	9	26	1.82
41136--41215	25	3.2	25	67	19	76	50	12	18	18	1.78
41135--41245	50	2.1	51	93	6	188	51	11	18	18	1.76
52483--52575	29	3.1	29	70	11	80	40	6	19	33	1.77
52569--52723	29	5.3	29	75	11	129	38	3	23	34	1.71
52532--52724	59	3.3	58	79	7	189	39	3	23	33	1.72
52532--52722	88	2.2	87	82	6	217	38	3	23	34	1.73
53790--53913	12	10.1	12	70	14	65	38	4	4	52	1.42
53828--53914	12	7.1	12	72	10	68	35	4	6	52	1.49
54593--54651	6	10.3	6	76	10	61	54	3	0	42	1.17
54596--54649	28	2.0	27	88	3	81	59	3	0	37	1.15
54593--54684	17	5.4	17	80	9	107	54	6	0	39	1.26
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54740--55029	147	2.0	147	90	2	458	31	19	10	38	1.86
55577--55622	24	1.9	23	86	8	65	56	6	4	32	1.45
59184--59241	28	2.0	30	83	10	75	48	1	1	48	1.22
61817--61855	21	1.9	20	94	5	69	33	10	25	30	1.89
61960--61993	15	2.1	17	89	10	54	20	2	5	70	1.21
61995--62045	12	4.6	11	85	14	70	62	0	1	35	1.06
62467--62500	17	2.0	17	100	0	68	47	23	11	17	1.81
62508--62532	13	1.9	13	100	0	50	56	8	8	28	1.57
62929--62953	12	2.1	12	100	0	50	48	8	0	44	1.32
65562--65600	21	1.9	20	94	5	69	33	10	25	30	1.89
65705--65738	15	2.1	17	89	10	54	20	2	5	70	1.21
65740--65790	12	4.6	11	85	14	70	62	0	1	35	1.06

Tables:   1

The End!