Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NTFQ01015314.1 Kokia drynarioides strain JFW-HI SEQ_130359, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 241155
ACGTcount: A:0.33, C:0.16, G:0.17, T:0.34
Warning! 617 characters in sequence are not A, C, G, or T
File 1 of 2
Found at i:132 original size:24 final size:26
Alignment explanation
Indices: 105--152 Score: 66
Period size: 24 Copynumber: 1.9 Consensus size: 26
95 AGAGAAATGT
105 AAATG-TGATATATGA-A-ATTATGAG
1 AAATGATGA-ATATGAGAGATTATGAG
129 AAATGATGAATATGAGAGATTATG
1 AAATGATGAATATGAGAGATTATG
153 CCCATGTAGA
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
24 11 0.52
25 4 0.19
26 6 0.29
ACGTcount: A:0.46, C:0.00, G:0.23, T:0.31
Consensus pattern (26 bp):
AAATGATGAATATGAGAGATTATGAG
Found at i:239 original size:23 final size:23
Alignment explanation
Indices: 213--310 Score: 137
Period size: 23 Copynumber: 4.3 Consensus size: 23
203 GAACACTAGC
213 GTGCTCTCTGATTAGCACTGT-GT
1 GTGCTCTCTGATTAGCACT-TCGT
*
236 GTGCTCTCTGTTTAGCACTTCGT
1 GTGCTCTCTGATTAGCACTTCGT
*
259 GTGCTCTCTGATTAGCA-TTGTGT
1 GTGCTCTCTGATTAGCACTT-CGT
*
282 GTGCTCTCTGTTTAGCACTTCGT
1 GTGCTCTCTGATTAGCACTTCGT
305 GTGCTC
1 GTGCTC
311 AGTACTTTGT
Statistics
Matches: 67, Mismatches: 5, Indels: 6
0.86 0.06 0.08
Matches are distributed among these distances:
22 3 0.04
23 62 0.93
24 2 0.03
ACGTcount: A:0.10, C:0.23, G:0.24, T:0.42
Consensus pattern (23 bp):
GTGCTCTCTGATTAGCACTTCGT
Found at i:281 original size:46 final size:45
Alignment explanation
Indices: 213--400 Score: 185
Period size: 46 Copynumber: 4.2 Consensus size: 45
203 GAACACTAGC
213 GTGCTCTCTGATTAGCACTGTGTGTGCTCTCTGTTTAGCACTTCGT
1 GTGCTCTCTGATTAGCACT-TGTGTGCTCTCTGTTTAGCACTTCGT
*
259 GTGCTCTCTGATTAGCATTGTGTGTGCTCTCTGTTTAGCACTTCGT
1 GTGCTCTCTGATTAGCACT-TGTGTGCTCTCTGTTTAGCACTTCGT
* * * * * *
305 GTG--CTC--AGTA-C-TTTGTGTACTCTCTATTTAGCGCTTTGT
1 GTGCTCTCTGATTAGCACTTGTGTGCTCTCTGTTTAGCACTTCGT
* *
344 GTGCTCTCTG-TTGCCCAGCACTTATGTGCTCTCTGTTTAGTACTTCG-
1 GTGCTCTCTGATT----AGCACTTGTGTGCTCTCTGTTTAGCACTTCGT
391 GTGCTCTCTG
1 GTGCTCTCTG
401 TTTGTTCCGT
Statistics
Matches: 118, Mismatches: 14, Indels: 19
0.78 0.09 0.13
Matches are distributed among these distances:
39 25 0.21
40 2 0.02
41 4 0.03
42 4 0.03
44 3 0.03
46 49 0.42
47 11 0.09
48 20 0.17
ACGTcount: A:0.11, C:0.24, G:0.23, T:0.43
Consensus pattern (45 bp):
GTGCTCTCTGATTAGCACTTGTGTGCTCTCTGTTTAGCACTTCGT
Found at i:9650 original size:21 final size:21
Alignment explanation
Indices: 9626--9665 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
9616 TACATCCGAT
*
9626 TTTGGTGTGGCTGCATCTGGC
1 TTTGGTGTGGATGCATCTGGC
*
9647 TTTGTTGTGGATGCATCTG
1 TTTGGTGTGGATGCATCTG
9666 AGTATGTTGA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.07, C:0.15, G:0.35, T:0.42
Consensus pattern (21 bp):
TTTGGTGTGGATGCATCTGGC
Found at i:9673 original size:21 final size:21
Alignment explanation
Indices: 9631--9674 Score: 54
Period size: 21 Copynumber: 2.1 Consensus size: 21
9621 CCGATTTTGG
* *
9631 TGTGGCTGCATCTGGCTTTGT
1 TGTGGATGCATCTGGCTATGT
9652 TGTGGATGCATCTGAG-TATGT
1 TGTGGATGCATCTG-GCTATGT
9673 TG
1 TG
9675 ATTGTAATTC
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
21 19 0.95
22 1 0.05
ACGTcount: A:0.11, C:0.14, G:0.34, T:0.41
Consensus pattern (21 bp):
TGTGGATGCATCTGGCTATGT
Found at i:9686 original size:21 final size:21
Alignment explanation
Indices: 9662--9705 Score: 54
Period size: 21 Copynumber: 2.1 Consensus size: 21
9652 TGTGGATGCA
*
9662 TCTG-AGTATGTTGATTGTAAT
1 TCTGCAGT-TGTTGACTGTAAT
*
9683 TCTGCTGTTGTTGACTGTAAT
1 TCTGCAGTTGTTGACTGTAAT
9704 TC
1 TC
9706 CCTTATTTTG
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
21 18 0.90
22 2 0.10
ACGTcount: A:0.18, C:0.11, G:0.23, T:0.48
Consensus pattern (21 bp):
TCTGCAGTTGTTGACTGTAAT
Found at i:11353 original size:21 final size:21
Alignment explanation
Indices: 11327--11385 Score: 66
Period size: 20 Copynumber: 2.9 Consensus size: 21
11317 AATAGTGCAA
11327 ACTTCTACCGATACAAGTGAC
1 ACTTCTACCGATACAAGTGAC
* * *
11348 AGTTCTA-CGATACAAATGAT
1 ACTTCTACCGATACAAGTGAC
* *
11368 TCTTCTACCGATATAAGT
1 ACTTCTACCGATACAAGT
11386 CTTACTTTTA
Statistics
Matches: 30, Mismatches: 7, Indels: 2
0.77 0.18 0.05
Matches are distributed among these distances:
20 16 0.53
21 14 0.47
ACGTcount: A:0.34, C:0.22, G:0.14, T:0.31
Consensus pattern (21 bp):
ACTTCTACCGATACAAGTGAC
Found at i:13229 original size:20 final size:20
Alignment explanation
Indices: 13193--13242 Score: 59
Period size: 20 Copynumber: 2.5 Consensus size: 20
13183 TCATTAAGCT
13193 TTAATTAATCATTTTTA-ATC
1 TTAATTAATCATTTTTACA-C
13213 TTAATTAATC-TTATTTACAC
1 TTAATTAATCATT-TTTACAC
13233 TTAATGTAAT
1 TTAAT-TAAT
13243 GTAAATCATG
Statistics
Matches: 27, Mismatches: 0, Indels: 5
0.84 0.00 0.16
Matches are distributed among these distances:
19 2 0.07
20 20 0.74
21 5 0.19
ACGTcount: A:0.36, C:0.10, G:0.02, T:0.52
Consensus pattern (20 bp):
TTAATTAATCATTTTTACAC
Found at i:24915 original size:28 final size:26
Alignment explanation
Indices: 24876--24934 Score: 73
Period size: 28 Copynumber: 2.2 Consensus size: 26
24866 ACTATTCACA
*
24876 TTTTTTTTTTACTCATGATTCTTTTC
1 TTTTTTTTTTACTCATGATTCTTCTC
**
24902 TTTTCTTTTCTTACTCATTTTTCTTCTC
1 TTTT-TTTT-TTACTCATGATTCTTCTC
24930 TTTTT
1 TTTTT
24935 GATTTTGCTC
Statistics
Matches: 28, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
26 4 0.14
27 5 0.18
28 19 0.68
ACGTcount: A:0.08, C:0.19, G:0.02, T:0.71
Consensus pattern (26 bp):
TTTTTTTTTTACTCATGATTCTTCTC
Found at i:30583 original size:37 final size:37
Alignment explanation
Indices: 30542--30777 Score: 124
Period size: 37 Copynumber: 6.4 Consensus size: 37
30532 CATGAAGGCC
* * * *
30542 TGCTAGGCATATAGCCTGATTACAC-TGGCACAAAGTT
1 TGCTAGGCACATAGCCCGAATACACAT-GCACAAAGCT
*
30579 TGCTAGGCACATAGCCCGAATACACATGCACGAAGCT
1 TGCTAGGCACATAGCCCGAATACACATGCACAAAGCT
* * * *
30616 TGCTTGGCACATAGCCCGAATATA-ACG-ACATGAAGCC
1 TGCTAGGCACATAGCCCGAATACACATGCACA--AAGCT
* * * * *
30653 TGCTAGGCACATAGCTCGATTTCACCA-GCATAAAGCC
1 TGCTAGGCACATAGCCCGAATACA-CATGCACAAAGCT
* * * * * * *
30690 TACTACGCACATAGCCC-AATTTCA-TTGTTAAAAAGCC
1 TGCTAGGCACATAGCCCGAA-TACACATG-CACAAAGCT
* * * * * * *
30727 TGCTAAGCACATAGCCCAAATTCACCTACACGAAGCC
1 TGCTAGGCACATAGCCCGAATACACATGCACAAAGCT
30764 TGCTAGGCACATAG
1 TGCTAGGCACATAG
30778 TTTGATTTAC
Statistics
Matches: 157, Mismatches: 31, Indels: 22
0.75 0.15 0.10
Matches are distributed among these distances:
35 2 0.01
36 4 0.03
37 143 0.91
38 5 0.03
39 3 0.02
ACGTcount: A:0.32, C:0.28, G:0.19, T:0.21
Consensus pattern (37 bp):
TGCTAGGCACATAGCCCGAATACACATGCACAAAGCT
Found at i:32216 original size:41 final size:41
Alignment explanation
Indices: 32159--32240 Score: 155
Period size: 41 Copynumber: 2.0 Consensus size: 41
32149 AGGCTATTAC
32159 AAAATGAAATTTTTCCCAATCAAGCACTAGATTAGTTTCCT
1 AAAATGAAATTTTTCCCAATCAAGCACTAGATTAGTTTCCT
*
32200 AAAATGACATTTTTCCCAATCAAGCACTAGATTAGTTTCCT
1 AAAATGAAATTTTTCCCAATCAAGCACTAGATTAGTTTCCT
32241 CGCTCCTCTA
Statistics
Matches: 40, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
41 40 1.00
ACGTcount: A:0.35, C:0.21, G:0.10, T:0.34
Consensus pattern (41 bp):
AAAATGAAATTTTTCCCAATCAAGCACTAGATTAGTTTCCT
Found at i:37481 original size:19 final size:21
Alignment explanation
Indices: 37445--37483 Score: 55
Period size: 19 Copynumber: 2.0 Consensus size: 21
37435 ATCTTTAGAA
*
37445 GAGTGAGAAGAGAGAAGAAAT
1 GAGTGAGAAGAGAAAAGAAAT
37466 GAGTGA-AAGA-AAAAGAAA
1 GAGTGAGAAGAGAAAAGAAA
37484 ATAAATTATA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 7 0.41
20 4 0.24
21 6 0.35
ACGTcount: A:0.59, C:0.00, G:0.33, T:0.08
Consensus pattern (21 bp):
GAGTGAGAAGAGAAAAGAAAT
Found at i:38242 original size:30 final size:30
Alignment explanation
Indices: 38168--38227 Score: 113
Period size: 30 Copynumber: 2.0 Consensus size: 30
38158 TTAAAATATA
38168 AATAT-AAAAAAAATGGCAGTTAAAAATTT
1 AATATAAAAAAAAATGGCAGTTAAAAATTT
38197 AATATAAAAAAAAATGGCAGTTAAAAATTT
1 AATATAAAAAAAAATGGCAGTTAAAAATTT
38227 A
1 A
38228 CATTTATATC
Statistics
Matches: 30, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
29 5 0.17
30 25 0.83
ACGTcount: A:0.60, C:0.03, G:0.10, T:0.27
Consensus pattern (30 bp):
AATATAAAAAAAAATGGCAGTTAAAAATTT
Found at i:49845 original size:21 final size:21
Alignment explanation
Indices: 49821--49860 Score: 64
Period size: 21 Copynumber: 1.9 Consensus size: 21
49811 TAAAACGAAG
49821 TAGTTTT-ACCTTTTAACTTAA
1 TAGTTTTGA-CTTTTAACTTAA
49842 TAGTTTTGACTTTTAACTT
1 TAGTTTTGACTTTTAACTT
49861 TAGAAAAGGT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
21 17 0.94
22 1 0.06
ACGTcount: A:0.25, C:0.12, G:0.07, T:0.55
Consensus pattern (21 bp):
TAGTTTTGACTTTTAACTTAA
Found at i:50262 original size:19 final size:19
Alignment explanation
Indices: 50230--50281 Score: 63
Period size: 18 Copynumber: 2.8 Consensus size: 19
50220 TTAAAATTAC
*
50230 AAATTTTAGAATTTTTATAA
1 AAATTTT-GAATTTTTAAAA
*
50250 ATATTTTGAA-TTTTAAAA
1 AAATTTTGAATTTTTAAAA
50268 AAATTTTG-ATTTTT
1 AAATTTTGAATTTTT
50282 TTGTAATTTT
Statistics
Matches: 28, Mismatches: 3, Indels: 4
0.80 0.09 0.11
Matches are distributed among these distances:
17 1 0.04
18 18 0.64
19 3 0.11
20 6 0.21
ACGTcount: A:0.40, C:0.00, G:0.06, T:0.54
Consensus pattern (19 bp):
AAATTTTGAATTTTTAAAA
Found at i:51345 original size:22 final size:23
Alignment explanation
Indices: 51302--51348 Score: 69
Period size: 24 Copynumber: 2.0 Consensus size: 23
51292 ACTAAGAATA
*
51302 AGAAAAATTCATATTTTTATCTTC
1 AGAAAAATTCAGA-TTTTATCTTC
51326 AGAAAAATTCAGA-TTTATCTTC
1 AGAAAAATTCAGATTTTATCTTC
51348 A
1 A
51349 AATTTTAATC
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
22 10 0.45
24 12 0.55
ACGTcount: A:0.40, C:0.13, G:0.06, T:0.40
Consensus pattern (23 bp):
AGAAAAATTCAGATTTTATCTTC
Found at i:56631 original size:32 final size:31
Alignment explanation
Indices: 56576--56648 Score: 85
Period size: 32 Copynumber: 2.3 Consensus size: 31
56566 ATTAGTTTAT
**
56576 TTAATTTATATAAGTTATCAAATT-AAATTAA
1 TTAATTTATATAAGCCATCAAATTCAAA-TAA
*
56607 TTAATTTATCATAAGCCATTAAATTCAAATAA
1 TTAATTTAT-ATAAGCCATCAAATTCAAATAA
*
56639 TTGATTTATA
1 TTAATTTATA
56649 AGTTTATGTT
Statistics
Matches: 36, Mismatches: 4, Indels: 4
0.82 0.09 0.09
Matches are distributed among these distances:
31 10 0.28
32 23 0.64
33 3 0.08
ACGTcount: A:0.45, C:0.07, G:0.04, T:0.44
Consensus pattern (31 bp):
TTAATTTATATAAGCCATCAAATTCAAATAA
Found at i:70927 original size:42 final size:42
Alignment explanation
Indices: 70864--70975 Score: 181
Period size: 42 Copynumber: 2.7 Consensus size: 42
70854 GAGCATCAAG
*
70864 ATAT-ATTAAAGGAAGATTCATGTCTCAGGATGAGAATGAGA
1 ATATGATTAAAGGAAGACTCATGTCTCAGGATGAGAATGAGA
*
70905 ATATGATTAAAGGAAGACTCATGTCTCGGGATGAGAATGAGA
1 ATATGATTAAAGGAAGACTCATGTCTCAGGATGAGAATGAGA
* *
70947 ATATGATTAAAGGAAAACTCATGACTCAG
1 ATATGATTAAAGGAAGACTCATGTCTCAG
70976 AATGTGAGAT
Statistics
Matches: 65, Mismatches: 5, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
41 4 0.06
42 61 0.94
ACGTcount: A:0.41, C:0.10, G:0.24, T:0.25
Consensus pattern (42 bp):
ATATGATTAAAGGAAGACTCATGTCTCAGGATGAGAATGAGA
Found at i:73080 original size:21 final size:20
Alignment explanation
Indices: 73055--73095 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 20
73045 TATTAAATTT
*
73055 AATATAATATTTATCTTAATA
1 AATATAATATTAAT-TTAATA
*
73076 AATATTATATTAATTTAATA
1 AATATAATATTAATTTAATA
73096 TTAAAGTGAT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
20 6 0.33
21 12 0.67
ACGTcount: A:0.49, C:0.02, G:0.00, T:0.49
Consensus pattern (20 bp):
AATATAATATTAATTTAATA
Found at i:73093 original size:5 final size:6
Alignment explanation
Indices: 73034--73099 Score: 56
Period size: 6 Copynumber: 12.0 Consensus size: 6
73024 AATAATATTT
* *
73034 TATTAA T-TTAA TATTAA -ATTTAA TA-TAA TATTTA TCTTAA TA--AA
1 TATTAA TATTAA TATTAA TA-TTAA TATTAA TATTAA TATTAA TATTAA
73078 TATT-A TATTAA T-TTAA TATTAA
1 TATTAA TATTAA TATTAA TATTAA
73100 AGTGATTAAG
Statistics
Matches: 48, Mismatches: 4, Indels: 16
0.71 0.06 0.24
Matches are distributed among these distances:
4 4 0.08
5 21 0.44
6 22 0.46
7 1 0.02
ACGTcount: A:0.47, C:0.02, G:0.00, T:0.52
Consensus pattern (6 bp):
TATTAA
Found at i:73093 original size:49 final size:47
Alignment explanation
Indices: 73002--73100 Score: 153
Period size: 49 Copynumber: 2.1 Consensus size: 47
72992 TAAAAAATAA
* *
73002 AAATTTAATTTAATAATATCTTAATAATATTTTATTAATTTAATATT
1 AAATTTAATATAATAATATCTTAATAATATTATATTAATTTAATATT
*
73049 AAATTTAATATAATATTTATCTTAATAAATATTATATTAATTTAATATT
1 AAATTTAATATAATA-ATATCTTAAT-AATATTATATTAATTTAATATT
73098 AAA
1 AAA
73101 GTGATTAAGT
Statistics
Matches: 47, Mismatches: 3, Indels: 2
0.90 0.06 0.04
Matches are distributed among these distances:
47 14 0.30
48 9 0.19
49 24 0.51
ACGTcount: A:0.47, C:0.02, G:0.00, T:0.51
Consensus pattern (47 bp):
AAATTTAATATAATAATATCTTAATAATATTATATTAATTTAATATT
Found at i:75506 original size:29 final size:29
Alignment explanation
Indices: 75401--75512 Score: 102
Period size: 28 Copynumber: 3.9 Consensus size: 29
75391 TTTGGATGCC
75401 TGGGGGTAAAATGGTAATTTTT-GACACT
1 TGGGGGTAAAATGGTAATTTTTAGACACT
* * * * *
75429 CGGGGGCAAAATGGTAATTTTCA-AAAGGT
1 TGGGGGTAAAATGGTAATTTTTAGACA-CT
* * * * *
75458 TCGGAGTCAAAATCGAAATTTTTAGACATT
1 TGGGGGT-AAAATGGTAATTTTTAGACACT
75488 TGGGGGTAAAATGGTAATTTTTAGA
1 TGGGGGTAAAATGGTAATTTTTAGA
75513 AAAATTAAGG
Statistics
Matches: 62, Mismatches: 18, Indels: 7
0.71 0.21 0.08
Matches are distributed among these distances:
28 21 0.34
29 20 0.32
30 19 0.31
31 2 0.03
ACGTcount: A:0.33, C:0.08, G:0.27, T:0.32
Consensus pattern (29 bp):
TGGGGGTAAAATGGTAATTTTTAGACACT
Found at i:75526 original size:59 final size:59
Alignment explanation
Indices: 75466--75712 Score: 193
Period size: 59 Copynumber: 4.2 Consensus size: 59
75456 GTTCGGAGTC
* * *
75466 AAAATCGAAATTTTTAGACA-TTTGGGGGTAAAATGGTAATTTTTAGAAAAATTAAGGTCA
1 AAAAT-GAAATTTTTAGA-AGTTCGAGGGTAAAATGGTAAATTTTAGAAAAATTAAGGTCA
* * ***
75526 AAAATGAAATTTTTGGAAGTTCGAGGGTAAAATGGTAAATTTTGGAAAAATCGGGGTCA
1 AAAATGAAATTTTTAGAAGTTCGAGGGTAAAATGGTAAATTTTAGAAAAATTAAGGTCA
* * * * **
75585 AAAATGGAATTTTT-GAAAGTTAGAGGATAAGAA-GGTAAATTTTGGAAAAATCGAGGTCA
1 AAAATGAAATTTTTAG-AAGTTCGAGGGTAA-AATGGTAAATTTTAGAAAAATTAAGGTCA
* ** * * * * *
75644 AAAAGGGTA-TTTTGGAAAGTTC-AGGGTAAAAT-GTAATTTTTAGAAAATTTGAGGT-T
1 AAAATGAAATTTTTAG-AAGTTCGAGGGTAAAATGGTAAATTTTAGAAAAATTAAGGTCA
*
75700 AAAATGGAATTTT
1 AAAATGAAATTTT
75713 GGAAAGTTTG
Statistics
Matches: 158, Mismatches: 23, Indels: 15
0.81 0.12 0.08
Matches are distributed among these distances:
56 7 0.04
57 24 0.15
58 12 0.08
59 108 0.68
60 7 0.04
ACGTcount: A:0.41, C:0.04, G:0.24, T:0.32
Consensus pattern (59 bp):
AAAATGAAATTTTTAGAAGTTCGAGGGTAAAATGGTAAATTTTAGAAAAATTAAGGTCA
Found at i:75557 original size:29 final size:30
Alignment explanation
Indices: 75521--75610 Score: 80
Period size: 30 Copynumber: 3.0 Consensus size: 30
75511 GAAAAATTAA
75521 GGTCAAAAATGAAATTTTTGGAAGTTCGAG
1 GGTCAAAAATGAAATTTTTGGAAGTTCGAG
**
75551 GGT--AAAATGGTAAA-TTTTGGAAAAATCG-G
1 GGTCAAAAAT-G-AAATTTTTGG-AAGTTCGAG
* * *
75580 GGTCAAAAATGGAATTTTTGAAAGTTAGAG
1 GGTCAAAAATGAAATTTTTGGAAGTTCGAG
75610 G
1 G
75611 ATAAGAAGGT
Statistics
Matches: 46, Mismatches: 7, Indels: 14
0.69 0.10 0.21
Matches are distributed among these distances:
28 5 0.11
29 17 0.37
30 19 0.41
31 5 0.11
ACGTcount: A:0.39, C:0.04, G:0.28, T:0.29
Consensus pattern (30 bp):
GGTCAAAAATGAAATTTTTGGAAGTTCGAG
Found at i:75710 original size:29 final size:29
Alignment explanation
Indices: 75474--75829 Score: 102
Period size: 29 Copynumber: 12.2 Consensus size: 29
75464 TCAAAATCGA
* * *
75474 AATTTTTAG-ACATTTGGGGGTAAAATGG
1 AATTTTTAGAAAATTTGAGGTTAAAATGG
* * * *
75502 TAATTTTTAGAAAAATTAAGGTCAAAAATGA
1 -AATTTTTAGAAAATTTGAGGT-TAAAATGG
* * * *
75533 AATTTTT-GGAAGTTCGAGGGTAAAATGG
1 AATTTTTAGAAAATTTGAGGTTAAAATGG
* * * * * *
75561 TAAATTTTGGAAAAATCGGGGTCAAAAATGG
1 -AATTTTTAGAAAATTTGAGGT-TAAAATGG
* * *
75592 AATTTTT-GAAAGTTAGAGGATAAGAA-GG
1 AATTTTTAGAAAATTTGAGGTTAA-AATGG
* * * * * *
75620 TAAATTTTGGAAAAATCGAGGTCAAAAAGG
1 -AATTTTTAGAAAATTTGAGGTTAAAATGG
* * * * * *
75650 -GTATTTT-GGAAAGTTCAGGGTAAAATGT
1 AAT-TTTTAGAAAATTTGAGGTTAAAATGG
75678 AATTTTTAGAAAATTTGAGGTTAAAATGG
1 AATTTTTAGAAAATTTGAGGTTAAAATGG
* * * * **
75707 AA-TTTTGGAAAGTTTGGGGATAAAAATATA
1 AATTTTTAGAAAATTTGAGG-TTAAAAT-GG
* * ** *
75737 AATTTTTAAAAAAAATCAAGGTTAAAAGGG
1 AATTTTT-AGAAAATTTGAGGTTAAAATGG
* * * * *
75767 TA-TTTTGGAAAGTTTG-GGGTAAAATGT
1 AATTTTTAGAAAATTTGAGGTTAAAATGG
75794 AATTTTTAGAAAATTT-AGTGTTAAAAATGG
1 AATTTTTAGAAAATTTGAG-GTT-AAAATGG
75824 AATTTT
1 AATTTT
75830 GGAAAGTTTA
Statistics
Matches: 224, Mismatches: 83, Indels: 39
0.65 0.24 0.11
Matches are distributed among these distances:
27 9 0.04
28 57 0.25
29 75 0.33
30 55 0.25
31 22 0.10
32 6 0.03
ACGTcount: A:0.41, C:0.03, G:0.23, T:0.33
Consensus pattern (29 bp):
AATTTTTAGAAAATTTGAGGTTAAAATGG
Found at i:75798 original size:116 final size:117
Alignment explanation
Indices: 75486--75992 Score: 469
Period size: 116 Copynumber: 4.3 Consensus size: 117
75476 TTTTTAGACA
* * * * **
75486 TTTGGGGGT-AAAATGGT-AATTTTTAGAAAAATTAAGGTCAAAAATGAAATTTTTGG-AAGTTC
1 TTTGGGGATAAAAAT-GTAAATTTTTAAAAAAATCAAGGT-AAAAAGGGTA-TTTTGGAAAGTTC
* * * * * * *
75548 GAGGGTAAAATGGTAAATTTTGGAAAAATCGGGGTCAAAAATGGAATTTTTGAAAG
63 GAGGGTAAAAT-GTAATTTTTAGAAAATTTGAGGTTAAAAATGGAATTTTGGAAAG
* * * * ** *
75604 TTAGAGGATAAGAAGGTAAA-TTTTGGAAAAATCGAGGTCAAAAAGGGTATTTTGGAAAGTTC-A
1 TTTGGGGATAAAAATGTAAATTTTTAAAAAAATCAAGGT-AAAAAGGGTATTTTGGAAAGTTCGA
75667 GGGTAAAATGTAATTTTTAGAAAATTTGAGGTT-AAAATGGAATTTTGGAAAG
65 GGGTAAAATGTAATTTTTAGAAAATTTGAGGTTAAAAATGGAATTTTGGAAAG
* * *
75719 TTTGGGGATAAAAATATAAATTTTTAAAAAAAATCAAGGTTAAAAGGGTATTTTGGAAAGTTTG-
1 TTTGGGGATAAAAATGTAAATTTTT-AAAAAAATCAAGGTAAAAAGGGTATTTTGGAAAGTTCGA
75783 GGGTAAAATGTAATTTTTAGAAAATTT-AGTGTTAAAAATGGAATTTTGGAAAG
65 GGGTAAAATGTAATTTTTAGAAAATTTGAG-GTTAAAAATGGAATTTTGGAAAG
* ** * * * * * *
75836 TTTAGGGATAAAAATGTATTTTTTTTAAAAAAAT-AGGGTCAAAATGGAATTTTGGGAAGTTTGA
1 TTTGGGGATAAAAATGTA-AATTTTTAAAAAAATCAAGGTAAAAAGGGTATTTTGGAAAGTTCGA
* * * * *
75900 GGGTATAAGTGTAATTTTTGGAAATTTTGGGGTTAAAAATGAAATTTTGGAAAG
65 GGGTA-AAATGTAATTTTTAGAAAATTTGAGGTTAAAAATGGAATTTTGGAAAG
* * * *
75954 TTCGAGGG-T-AAAATGTAATTTTTTGAAAAATTCGAAGGT
1 TTTG-GGGATAAAAATGTAAATTTTTAAAAAAATC-AAGGT
75993 CGAAATATGA
Statistics
Matches: 326, Mismatches: 48, Indels: 30
0.81 0.12 0.07
Matches are distributed among these distances:
115 35 0.11
116 109 0.33
117 83 0.25
118 90 0.28
119 9 0.03
ACGTcount: A:0.40, C:0.02, G:0.24, T:0.34
Consensus pattern (117 bp):
TTTGGGGATAAAAATGTAAATTTTTAAAAAAATCAAGGTAAAAAGGGTATTTTGGAAAGTTCGAG
GGTAAAATGTAATTTTTAGAAAATTTGAGGTTAAAAATGGAATTTTGGAAAG
Found at i:75858 original size:29 final size:28
Alignment explanation
Indices: 75653--75981 Score: 119
Period size: 29 Copynumber: 11.3 Consensus size: 28
75643 AAAAAGGGTA
*
75653 TTTTGGAAAGTTCAGGGT-AAAATGTAAT
1 TTTTGGAAAGTTTAGGGTAAAAATGT-AT
* * * * *
75681 TTTTAGAAAATTT-GAGGTTAAAATGGAA
1 TTTTGGAAAGTTTAG-GGTAAAAATGTAT
* *
75709 TTTTGGAAAGTTTGGGGATAAAAATATAAAT
1 TTTTGGAAAGTTTAGGG-TAAAAATGT--AT
** * ** * **
75740 TTTTAAAAAAAATCAAGGTTAAAAGGGTA-
1 TTTT--GGAAAGTTTAGGGTAAAAATGTAT
*
75769 TTTTGGAAAGTTTGGGGT-AAAATGTAAT
1 TTTTGGAAAGTTTAGGGTAAAAATGT-AT
* * * * *
75797 TTTTAGAAAATTTAGTGTTAAAAATGGAA
1 TTTTGGAAAGTTTAG-GGTAAAAATGTAT
75826 TTTTGGAAAGTTTAGGGATAAAAATGTATTT
1 TTTTGGAAAGTTTAGGG-TAAAAATGTA--T
** *** * * *
75857 TTTTTAAAAAAATAGGGTCAAAATGGAA
1 TTTTGGAAAGTTTAGGGTAAAAATGTAT
* * *
75885 TTTTGGGAAGTTTGAGGGTATAAGTGTAAT
1 TTTTGGAAAGTTT-AGGGTAAAAATGT-AT
* * * *
75915 TTTTGGAAATTTTGGGGTTAAAAATGAAA
1 TTTTGGAAAGTTTAGGG-TAAAAATGTAT
*
75944 TTTTGGAAAGTTCGAGGGT-AAAATGTAAT
1 TTTTGGAAAGTT-TAGGGTAAAAATGT-AT
*
75973 TTTTTGAAA
1 TTTTGGAAA
75982 AATTCGAAGG
Statistics
Matches: 208, Mismatches: 73, Indels: 39
0.65 0.23 0.12
Matches are distributed among these distances:
26 5 0.02
27 9 0.04
28 53 0.25
29 76 0.37
30 36 0.17
31 17 0.08
32 6 0.03
33 6 0.03
ACGTcount: A:0.39, C:0.01, G:0.23, T:0.36
Consensus pattern (28 bp):
TTTTGGAAAGTTTAGGGTAAAAATGTAT
Found at i:75866 original size:117 final size:116
Alignment explanation
Indices: 75584--75983 Score: 436
Period size: 117 Copynumber: 3.4 Consensus size: 116
75574 AATCGGGGTC
* * * * ** *
75584 AAAAATGGAATTTTTGAAAG-TTAGAGGATAAGAAGGTAA-ATTTT-GGAAAAATCGAGGTCAAA
1 AAAAATGGAATTTTGGAAAGTTTAG-GGATAAAAATGTAATTTTTTAAAAAAAATCAAGGT-AAA
**
75646 AAGGGTATTTTGGAAAGTTCAGGGTAAAATGTAATTTTTAGAAAATTTGAGGTT
64 AAGGGTATTTTGGAAAGTTTGGGGTAAAATGTAATTTTTAGAAAATTT-AGGTT
* * * *
75700 -AAAATGGAATTTTGGAAAGTTTGGGGATAAAAATATAAATTTTTAAAAAAAATCAAGGTTAAAA
1 AAAAATGGAATTTTGGAAAGTTTAGGGATAAAAATGTAATTTTTTAAAAAAAATCAAGGTAAAAA
75764 GGGTATTTTGGAAAGTTTGGGGTAAAATGTAATTTTTAGAAAATTTAGTGTT
66 GGGTATTTTGGAAAGTTTGGGGTAAAATGTAATTTTTAGAAAATTTAG-GTT
* * * *
75816 AAAAATGGAATTTTGGAAAGTTTAGGGATAAAAATGTATTTTTTTTAAAAAAAT-AGGGTCAAAA
1 AAAAATGGAATTTTGGAAAGTTTAGGGATAAAAATGTAATTTTTTAAAAAAAATCAAGGTAAAAA
* * * * * * *
75880 TGGAATTTTGGGAAGTTTGAGGGTATAAGTGTAATTTTTGGAAATTTTGGGGTT
66 GGGTATTTTGGAAAGTTTG-GGGTA-AAATGTAATTTTTAGAAAATTT-AGGTT
* * *
75934 AAAAATGAAATTTTGGAAAGTTCGAGGG-T-AAAATGTAATTTTTTGAAAAA
1 AAAAATGGAATTTTGGAAAGTT-TAGGGATAAAAATGTAATTTTTTAAAAAA
75984 TTCGAAGGTC
Statistics
Matches: 245, Mismatches: 30, Indels: 17
0.84 0.10 0.06
Matches are distributed among these distances:
115 31 0.13
116 82 0.33
117 83 0.34
118 44 0.18
119 5 0.02
ACGTcount: A:0.41, C:0.01, G:0.23, T:0.34
Consensus pattern (116 bp):
AAAAATGGAATTTTGGAAAGTTTAGGGATAAAAATGTAATTTTTTAAAAAAAATCAAGGTAAAAA
GGGTATTTTGGAAAGTTTGGGGTAAAATGTAATTTTTAGAAAATTTAGGTT
Found at i:76006 original size:59 final size:58
Alignment explanation
Indices: 75491--76015 Score: 362
Period size: 59 Copynumber: 8.9 Consensus size: 58
75481 AGACATTTGG
*
75491 GGGTAAAATGGTAATTTTTAGAAAAATT-AAGGTCAAAAATGAAATTTTTGG-AAGTTCGA
1 GGGTAAAAT-GTAATTTTTAGAAAAATTCGAGGTCAAAAATG-AA-TTTTGGAAAGTTCGA
* * * * *
75550 GGGTAAAATGGTAAATTTTGGAAAAA-TCGGGGTCAAAAATGGAATTTTTGAAAGTTAGA
1 GGGTAAAAT-GTAATTTTTAGAAAAATTCGAGGTCAAAAAT-GAATTTTGGAAAGTTCGA
* * * * * *
75609 GGATAAGAAGGTAAATTTTGGAAAAA-TCGAGGTCAAAAAGGGTATTTTGGAAAGTTC-A
1 GGGTAA-AATGTAATTTTTAGAAAAATTCGAGGTCAAAAA-TGAATTTTGGAAAGTTCGA
* * *
75667 GGGTAAAATGTAATTTTTAG-AAAATTTGAGGT-TAAAATGGAATTTTGGAAAGTTTG-
1 GGGTAAAATGTAATTTTTAGAAAAATTCGAGGTCAAAAAT-GAATTTTGGAAAGTTCGA
* * * * * ** * *
75723 GGGATAAAAATATAAATTTTTAAAAAAAATCAAGGTTAAAAGGGTATTTTGGAAAGTTTG-
1 GGG-T-AAAATGT-AATTTTTAGAAAAATTCGAGGTCAAAAATGAATTTTGGAAAGTTCGA
* * *
75783 GGGTAAAATGTAATTTTTAG-AAAATT-TAGTGTTAAAAATGGAATTTTGGAAAGTT-TA
1 GGGTAAAATGTAATTTTTAGAAAAATTCGAG-GTCAAAAAT-GAATTTTGGAAAGTTCGA
* * * * *
75840 GGGATAAAAATGTATTTTTTTTA-AAAAAATAG-GGTC-AAAATGGAATTTTGGGAAGTTTGA
1 GGG-T-AAAATGTA--ATTTTTAGAAAAATTCGAGGTCAAAAAT-GAATTTTGGAAAGTTCGA
* * * * * *
75900 GGGTATAAGTGTAATTTTT-GGAAATTTTGGGGTTAAAAATGAAATTTTGGAAAGTTCGA
1 GGGTA-AAATGTAATTTTTAGAAAAATTCGAGGTCAAAAATG-AATTTTGGAAAGTTCGA
* * * *
75959 GGGTAAAATGTAATTTTTTGAAAAATTCGAAGGTCGAAATATGATTTTTGGATAGTT
1 GGGTAAAATGTAATTTTTAGAAAAATTCG-AGGTC-AAAAATGAATTTTGGAAAGTT
76016 TAAAGACCTT
Statistics
Matches: 372, Mismatches: 63, Indels: 61
0.75 0.13 0.12
Matches are distributed among these distances:
55 2 0.01
56 37 0.10
57 53 0.14
58 42 0.11
59 165 0.44
60 52 0.14
61 21 0.06
ACGTcount: A:0.40, C:0.02, G:0.24, T:0.34
Consensus pattern (58 bp):
GGGTAAAATGTAATTTTTAGAAAAATTCGAGGTCAAAAATGAATTTTGGAAAGTTCGA
Found at i:77772 original size:17 final size:17
Alignment explanation
Indices: 77749--77849 Score: 121
Period size: 17 Copynumber: 5.9 Consensus size: 17
77739 CATTTTTAAT
*
77749 TAAATTTTAATTTAAAA
1 TAAATTTAAATTTAAAA
*
77766 GAAATTTAAATTTTAAAA
1 TAAATTTAAA-TTTAAAA
* * *
77784 TAAATTTAAACTCAAAG
1 TAAATTTAAATTTAAAA
*
77801 TAACTTTAAATTTAAAA
1 TAAATTTAAATTTAAAA
*
77818 TAAATTTAAACTTAAAA
1 TAAATTTAAATTTAAAA
*
77835 TAAATTAAAATTTAA
1 TAAATTTAAATTTAA
77850 GAACAATCCA
Statistics
Matches: 69, Mismatches: 14, Indels: 2
0.81 0.16 0.02
Matches are distributed among these distances:
17 53 0.77
18 16 0.23
ACGTcount: A:0.55, C:0.04, G:0.02, T:0.39
Consensus pattern (17 bp):
TAAATTTAAATTTAAAA
Found at i:78394 original size:49 final size:49
Alignment explanation
Indices: 78339--78959 Score: 447
Period size: 49 Copynumber: 12.7 Consensus size: 49
78329 CATAAGGTTT
* * *
78339 GCCATTGCGATTTAAACCTTTCCCTTCGTGTCTTCGTGGTATTGGATTC
1 GCCATTGCGACTTAAACCTTTCCCTTCATGTCTTCGTGGTACTGGATTC
* * * *
78388 GTCATTGCGGCTTAAATCTTTCCCTTTCATGTC-TCTGAGGTA-TAAGG-TTC
1 GCCATTGCGACTTAAACCTTTCCC-TTCATGTCTTC-GTGGTACT--GGATTC
* * * ** *
78438 GCCATTTCAACTTAAACCTTTTCCTTTGTGTCTTCGTGGTACTGGATTT
1 GCCATTGCGACTTAAACCTTTCCCTTCATGTCTTCGTGGTACTGGATTC
* * * *
78487 GCCGTTGC-AGCTTAAATCTTTACCTTCGTGTC-TC-TAAGGTACTAGG-TTC
1 GCCATTGCGA-CTTAAACCTTTCCCTTCATGTCTTCGT--GGTACT-GGATTC
* *
78536 GTCATTGCAACTTAAACCTTTCCCTTCATGT-TTCGTGGTACTGGATTC
1 GCCATTGCGACTTAAACCTTTCCCTTCATGTCTTCGTGGTACTGGATTC
* * * ** *
78584 GCCGTTGTGGCTTAAATATTTCTCTTCATGTC-TC-TAAGGTACTAGG-TTC
1 GCCATTGCGACTTAAACCTTTCCCTTCATGTCTTCGT--GGTACT-GGATTC
** *
78633 GCCATTGCGACTTAAACCTTTCCCTTTTGTGTCTTCATGGTACTGGATTC
1 GCCATTGCGACTTAAACCTTTCCC-TTCATGTCTTCGTGGTACTGGATTC
* * *
78683 GCCGTTGCGGCTTAAATCTTTCCCTTCATGTCTTCGTGGTACTGGATTC
1 GCCATTGCGACTTAAACCTTTCCCTTCATGTCTTCGTGGTACTGGATTC
* * * * * *
78732 ACCGTTGCGGCTTAAATCTTTCCCTTCATG-CTTTTGAGGTA-TAAGG-TTC
1 GCCATTGCGACTTAAACCTTTCCCTTCATGTC-TTCGTGGTACT--GGATTC
* * * *
78781 GTCATTGCGACTTAAACTTTTCCCTCCATATCTTCGTGGTACTGGATTC
1 GCCATTGCGACTTAAACCTTTCCCTTCATGTCTTCGTGGTACTGGATTC
* * * * * *
78830 GTCGTTGC-AGCTTAAATCTTTCCTTTCATG-CTTCTGCGGTACAAGG-TTC
1 GCCATTGCGA-CTTAAACCTTTCCCTTCATGTCTTC-GTGGTAC-TGGATTC
* * * *
78879 ACCGTTGCGACTTAAACCTTTCCCTCCATATCTTC---GTACTGGATTC
1 GCCATTGCGACTTAAACCTTTCCCTTCATGTCTTCGTGGTACTGGATTC
* * *
78925 GCCGTTGTGACTTAAATCTTTCCCTTCATGT-TTCG
1 GCCATTGCGACTTAAACCTTTCCCTTCATGTCTTCG
78960 CAGTACTGAG
Statistics
Matches: 454, Mismatches: 82, Indels: 75
0.74 0.13 0.12
Matches are distributed among these distances:
45 5 0.01
46 33 0.07
47 4 0.01
48 48 0.11
49 270 0.59
50 89 0.20
51 4 0.01
52 1 0.00
ACGTcount: A:0.17, C:0.25, G:0.19, T:0.40
Consensus pattern (49 bp):
GCCATTGCGACTTAAACCTTTCCCTTCATGTCTTCGTGGTACTGGATTC
Found at i:78484 original size:99 final size:98
Alignment explanation
Indices: 78300--78715 Score: 527
Period size: 99 Copynumber: 4.2 Consensus size: 98
78290 CACCGTTACA
* * * * * *
78300 GCTTAAAT-TTTCCTTTCATGTTTCTGAA-GCA-TAAGGTTTGCCATTGCGATTTAAACCTTTCC
1 GCTTAAATCTTTCCCTTCATGTCTCT-AAGGTACT-AGGTTCGCCATTGCAACTTAAACCTTTCC
* * *
78362 CTTCGTGTCTTCGTGGTATTGGATTCGTCATTGCG
64 CTTCGTGTCTTCGTGGTACTGGATTCGCCGTTGCG
* * *
78397 GCTTAAATCTTTCCCTTTCATGTCTCTGAGGTA-TAAGGTTCGCCATTTCAACTTAAACCTTTTC
1 GCTTAAATCTTTCCC-TTCATGTCTCTAAGGTACT-AGGTTCGCCATTGCAACTTAAACCTTTCC
* * *
78461 CTTTGTGTCTTCGTGGTACTGGATTTGCCGTTGCA
64 CTTCGTGTCTTCGTGGTACTGGATTCGCCGTTGCG
* * *
78496 GCTTAAATCTTTACCTTCGTGTCTCTAAGGTACTAGGTTCGTCATTGCAACTTAAACCTTTCCCT
1 GCTTAAATCTTTCCCTTCATGTCTCTAAGGTACTAGGTTCGCCATTGCAACTTAAACCTTTCCCT
* *
78561 TCATGT-TTCGTGGTACTGGATTCGCCGTTGTG
66 TCGTGTCTTCGTGGTACTGGATTCGCCGTTGCG
* * *
78593 GCTTAAATATTTCTCTTCATGTCTCTAAGGTACTAGGTTCGCCATTGCGACTTAAACCTTTCCCT
1 GCTTAAATCTTTCCCTTCATGTCTCTAAGGTACTAGGTTCGCCATTGCAACTTAAACCTTTCCC-
* *
78658 TTTGTGTCTTCATGGTACTGGATTCGCCGTTGCG
65 TTCGTGTCTTCGTGGTACTGGATTCGCCGTTGCG
78692 GCTTAAATCTTTCCCTTCATGTCT
1 GCTTAAATCTTTCCCTTCATGTCT
78716 TCGTGGTACT
Statistics
Matches: 275, Mismatches: 38, Indels: 10
0.85 0.12 0.03
Matches are distributed among these distances:
97 89 0.32
98 58 0.21
99 128 0.47
ACGTcount: A:0.17, C:0.23, G:0.19, T:0.41
Consensus pattern (98 bp):
GCTTAAATCTTTCCCTTCATGTCTCTAAGGTACTAGGTTCGCCATTGCAACTTAAACCTTTCCCT
TCGTGTCTTCGTGGTACTGGATTCGCCGTTGCG
Found at i:78664 original size:196 final size:197
Alignment explanation
Indices: 78341--78715 Score: 549
Period size: 196 Copynumber: 1.9 Consensus size: 197
78331 TAAGGTTTGC
* * * * * *
78341 CATTGCGATTTAAACCTTTCCCTTCGTGTCTTCGTGGTATTGGATTCGTCATTGCGGCTTAAATC
1 CATTGCAACTTAAACCTTTCCCTTCATGTCTTCGTGGTACTGGATTCGCCATTGCGGCTTAAATA
* * *
78406 TTTCCCTTTCATGTCTCTGAGGTATAAGGTTCGCCATTTCAACTTAAACCTTTTCCTTTGTGTCT
66 TTTCCCTTTCATGTCTCTAAGGTATAAGGTTCGCCATTGCAACTTAAACCTTTCCCTTTGTGTCT
* * *
78471 TCGTGGTACTGGATTTGCCGTTGCAGCTTAAATCTTTACCTTCGTGTCTCTAAGGTACTAGGTTC
131 TCATGGTACTGGATTCGCCGTTGCAGCTTAAATCTTTACCTTCATGTCTCTAAGGTACTAGGTTC
78536 GT
196 GT
* *
78538 CATTGCAACTTAAACCTTTCCCTTCATGT-TTCGTGGTACTGGATTCGCCGTTGTGGCTTAAATA
1 CATTGCAACTTAAACCTTTCCCTTCATGTCTTCGTGGTACTGGATTCGCCATTGCGGCTTAAATA
* *
78602 TTTCTC-TTCATGTCTCTAAGGTACT-AGGTTCGCCATTGCGACTTAAACCTTTCCCTTTTGTGT
66 TTTCCCTTTCATGTCTCTAAGGTA-TAAGGTTCGCCATTGCAACTTAAACCTTTCCC-TTTGTGT
* *
78665 CTTCATGGTACTGGATTCGCCGTTGCGGCTTAAATCTTTCCCTTCATGTCT
129 CTTCATGGTACTGGATTCGCCGTTGCAGCTTAAATCTTTACCTTCATGTCT
78716 TCGTGGTACT
Statistics
Matches: 158, Mismatches: 18, Indels: 5
0.87 0.10 0.03
Matches are distributed among these distances:
195 43 0.27
196 89 0.56
197 26 0.16
ACGTcount: A:0.17, C:0.24, G:0.19, T:0.41
Consensus pattern (197 bp):
CATTGCAACTTAAACCTTTCCCTTCATGTCTTCGTGGTACTGGATTCGCCATTGCGGCTTAAATA
TTTCCCTTTCATGTCTCTAAGGTATAAGGTTCGCCATTGCAACTTAAACCTTTCCCTTTGTGTCT
TCATGGTACTGGATTCGCCGTTGCAGCTTAAATCTTTACCTTCATGTCTCTAAGGTACTAGGTTC
GT
Found at i:78725 original size:99 final size:97
Alignment explanation
Indices: 78333--78758 Score: 518
Period size: 99 Copynumber: 4.3 Consensus size: 97
78323 CTGAAGCATA
* * * * *
78333 AGGTTTGCCATTGCGATTTAAACCTTTCCCTTCGTGTCTTCGTGGTATTGGATTCGTCATTGCGG
1 AGGTTCGCCATTGCGACTTAAACCTTTCCCTTCGTGTCTTCGTGGTACTGGATTCGCCGTTGCGG
78398 CTTAAATCTTTCCCTTTCATGTCTCTGAGGTA-T
66 CTTAAATCTTTCCC-TTCATGTCTCT-AGGTACT
* * * * * *
78431 AAGGTTCGCCATTTCAACTTAAACCTTTTCCTTTGTGTCTTCGTGGTACTGGATTTGCCGTTGCA
1 -AGGTTCGCCATTGCGACTTAAACCTTTCCCTTCGTGTCTTCGTGGTACTGGATTCGCCGTTGCG
* *
78496 GCTTAAATCTTTACCTTCGTGTCTCTAAGGTACT
65 GCTTAAATCTTTCCCTTCATGTCTCT-AGGTACT
* * * *
78530 AGGTTCGTCATTGCAACTTAAACCTTTCCCTTCATGT-TTCGTGGTACTGGATTCGCCGTTGTGG
1 AGGTTCGCCATTGCGACTTAAACCTTTCCCTTCGTGTCTTCGTGGTACTGGATTCGCCGTTGCGG
* *
78594 CTTAAATATTTCTCTTCATGTCTCTAAGGTACT
66 CTTAAATCTTTCCCTTCATGTCTCT-AGGTACT
* *
78627 AGGTTCGCCATTGCGACTTAAACCTTTCCCTTTTGTGTCTTCATGGTACTGGATTCGCCGTTGCG
1 AGGTTCGCCATTGCGACTTAAACCTTTCCC-TTCGTGTCTTCGTGGTACTGGATTCGCCGTTGCG
78692 GCTTAAATCTTTCCCTTCATGTCTTCGT-GGTACT
65 GCTTAAATCTTTCCCTTCATGTC-TC-TAGGTACT
* * * *
78726 -GGATTCACCGTTGCGGCTTAAATCTTTCCCTTC
1 AGG-TTCGCCATTGCGACTTAAACCTTTCCCTTC
78759 ATGCTTTTGA
Statistics
Matches: 282, Mismatches: 39, Indels: 13
0.84 0.12 0.04
Matches are distributed among these distances:
97 81 0.29
98 56 0.20
99 142 0.50
100 2 0.01
101 1 0.00
ACGTcount: A:0.16, C:0.24, G:0.19, T:0.40
Consensus pattern (97 bp):
AGGTTCGCCATTGCGACTTAAACCTTTCCCTTCGTGTCTTCGTGGTACTGGATTCGCCGTTGCGG
CTTAAATCTTTCCCTTCATGTCTCTAGGTACT
Found at i:78755 original size:196 final size:196
Alignment explanation
Indices: 78340--78761 Score: 539
Period size: 196 Copynumber: 2.1 Consensus size: 196
78330 ATAAGGTTTG
* * * * *
78340 CCATTGCGATTTAAACCTTTCCCTTCGTGTCTTCGTGGTATTGGATTCGTCATTGCGGCTTAAAT
1 CCATTGCAACTTAAACCTTTCCCTTCATGTCTTCGTGGTACTGGATTCGCCATTGCGGCTTAAAT
* * * *
78405 CTTTCCCTTTCATGTCTCTGAGGTATAAGGTTCGCCATTTCAACTTAAACCTTTTCCTTTGTGTC
66 ATTTCCCTTTCATGTCTCTAAGGTATAAGGTTCGCCATTGCAACTTAAACCTTTCCCTTTGTGTC
* * *
78470 TTCGTGGTACTGGATTTGCCGTTGCAGCTTAAATCTTTACCTTCGTGTCTCTAAGGTACTAGGTT
131 TTCATGGTACTGGATTCGCCGTTGCAGCTTAAATCTTTACCTTCATGTCTCT-AGGTACTAGGTT
*
78535 CG
195 CA
* * *
78537 TCATTGCAACTTAAACCTTTCCCTTCATGT-TTCGTGGTACTGGATTCGCCGTTGTGGCTTAAAT
1 CCATTGCAACTTAAACCTTTCCCTTCATGTCTTCGTGGTACTGGATTCGCCATTGCGGCTTAAAT
* *
78601 ATTTCTC-TTCATGTCTCTAAGGTACT-AGGTTCGCCATTGCGACTTAAACCTTTCCCTTTTGTG
66 ATTTCCCTTTCATGTCTCTAAGGTA-TAAGGTTCGCCATTGCAACTTAAACCTTTCCC-TTTGTG
* *
78664 TCTTCATGGTACTGGATTCGCCGTTGCGGCTTAAATCTTTCCCTTCATGTCTTCGT-GGTACT-G
129 TCTTCATGGTACTGGATTCGCCGTTGCAGCTTAAATCTTTACCTTCATGTC-TC-TAGGTACTAG
78727 GATTCA
192 G-TTCA
* ** *
78733 CCGTTGCGGCTTAAATCTTTCCCTTCATG
1 CCATTGCAACTTAAACCTTTCCCTTCATG
78762 CTTTTGAGGT
Statistics
Matches: 195, Mismatches: 25, Indels: 11
0.84 0.11 0.05
Matches are distributed among these distances:
195 45 0.23
196 121 0.62
197 28 0.14
198 1 0.01
ACGTcount: A:0.17, C:0.24, G:0.19, T:0.40
Consensus pattern (196 bp):
CCATTGCAACTTAAACCTTTCCCTTCATGTCTTCGTGGTACTGGATTCGCCATTGCGGCTTAAAT
ATTTCCCTTTCATGTCTCTAAGGTATAAGGTTCGCCATTGCAACTTAAACCTTTCCCTTTGTGTC
TTCATGGTACTGGATTCGCCGTTGCAGCTTAAATCTTTACCTTCATGTCTCTAGGTACTAGGTTC
A
Found at i:80751 original size:23 final size:23
Alignment explanation
Indices: 80721--80766 Score: 92
Period size: 23 Copynumber: 2.0 Consensus size: 23
80711 TCATGGACTT
80721 CTTCTAGGATTTTCTTAGCCTCG
1 CTTCTAGGATTTTCTTAGCCTCG
80744 CTTCTAGGATTTTCTTAGCCTCG
1 CTTCTAGGATTTTCTTAGCCTCG
80767 ATTGCGTCAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.13, C:0.26, G:0.17, T:0.43
Consensus pattern (23 bp):
CTTCTAGGATTTTCTTAGCCTCG
Found at i:82748 original size:18 final size:18
Alignment explanation
Indices: 82714--82748 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
82704 TTTAAATTGG
**
82714 TTTTAAATTTATTTTTAT
1 TTTTAAATTTAAATTTAT
82732 TTTTAAATTTAAATTTA
1 TTTTAAATTTAAATTTA
82749 AATTTAGATT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (18 bp):
TTTTAAATTTAAATTTAT
Found at i:83539 original size:3 final size:3
Alignment explanation
Indices: 83533--83577 Score: 90
Period size: 3 Copynumber: 15.0 Consensus size: 3
83523 ATAATGACTT
83533 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
83578 ATATTAATTT
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 42 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
TAA
Found at i:83970 original size:823 final size:824
Alignment explanation
Indices: 82760--84374 Score: 2687
Period size: 823 Copynumber: 2.0 Consensus size: 824
82750 ATTTAGATTA
*
82760 AATTTGAAATGGTTTTAAACTTAATATTAAATTAAATTTGAAAGCCCAAAATACAAGCTCAAACA
1 AATTTGAAATGGTTTTAAACTTAATATTAAATTAAATTTGAAAGCCCAAAATACAAACTCAAACA
*
82825 GAATGTACATTTTTACAAACCCAAAAGCTCATTTTACAAACCCAGATAAGGGCCCAATTTTGATT
66 GAATGTACATTTTTACAAACCCAAAAGCCCATTTTACAAACCCAGATAAGGGCCCAATTTTGATT
* * *
82890 TGACCCATTACATCCTAAACCCAATTGGGCCAATTCCAAATTGACCCAAACACCTAAAACCTAAA
131 TGACCCATTACACCCCAAACCCAATTAGGCCAATTCCAAATTGACCCAAACACCTAAAACCTAAA
* * *
82955 GCAAAAAGATCAAACCCTAAAACCTACTACCACCCCAACTTGTGCTGCTAGCACCTCTTCCTCGT
196 ACAAAAAGATCAAACCCTAAAACCTACTACCACCCCAACTTATGCTGCTAGCACCTCTTCCCCGT
* *
83020 CCAGCCAAAGGCCGTCACGTCAGCAACCAACTGCACCACTGCCACTGCTACCACCAAGTTGCATC
261 CCAGCCAAAGGCCGCCACGTCAGCAACCAACTGCACCACTGCCACTGCTACCACCAAGTTGCACC
* * *
83085 ACCGTCACTGGCACCTGCAAAAGGAAGAATAAGACAGGCATTAAATAGAAAAATAGATTGTAATG
326 ACCGTCACTGGCACCTGCAAAAGGAAGAATAAGACAAGCATTAAATAGAAAAACAAATTGTAATG
*
83150 ATTGTAATTTAGGCTATAAAGCCAGAATTGAAAACAAAATGTAAAATTACGAACTTTCAGTTAAA
391 ATTGTAATTTAGGCTATAAAGCCAAAATTGAAAACAAAATGTAAAATTACGAACTTTCAGTTAAA
* *
83215 ACACTTGAGATTAATACAAAGACAGAAACAGTGCACTTATAAGGGAAGATATTAGCACTCAAAGC
456 ACACTTGAGATTAATACAAAGACAGAAACAGTGCACTTATAAAGGAAGATATCAGCACTCAAAGC
* *
83280 AATAGGAAACAC-GGGCAATATTCAAAGTCAAGCAAACAAGCAATCAACATCTCGAGTAAGTTGA
521 AATAGGAAACACAAGGCAATATTCAAAGTCAAGCAAACAAGCAATCAACATCTCGAGAAAGTTGA
* * *
83344 ATACTAAATAGTTCACATCAGTTCAGGTATACATCCCCAGTAAGCATTCATTC-TATAATACTAA
586 ATACTAAACAGTTCACATCAGTCCAAGTATACATCCCCAGTAAGCATTCATTCAT-TAATACTAA
*
83408 CCCTTTAAATTTCAAACTGTATGCATCCTGTGTACATATTTATTAATACCTATTATTTATTATAT
650 CCCTTTAAATTTCAAACTGTATGCATCCTCTGTACATATTTATTAATACCTATTATTTATTATAT
* *
83473 TACCATTTATCATTTATTATTTCGAAACTAGCCTTTAATGTGTAGTAGTTATAATGACTTTAATA
715 TACCATTTATCATTTATTATTTCGAAACTAGCCTTTAATGAGTAGTAATTATAATGACTTTAATA
83538 ATAATAATAATAATAATAATAATAATAATAATAATAATAAATATT
780 ATAATAATAATAATAATAATAATAATAATAATAATAATAAATATT
* *
83583 AATTTGAAATGGTTTTAAACTTAATATTAAATTAAATTTGAAAGTCCAAAATACAAACTCAAATA
1 AATTTGAAATGGTTTTAAACTTAATATTAAATTAAATTTGAAAGCCCAAAATACAAACTCAAACA
* *
83648 GAATGTTCATTTTTACAAACCCAAAAGCCCATTTTACAAACCCAGATTAGGGCCCAATTTTGATT
66 GAATGTACATTTTTACAAACCCAAAAGCCCATTTTACAAACCCAGATAAGGGCCCAATTTTGATT
* * * *
83713 TGACCTATTACACCCCAAACCCAATTAGGCCAATTTCAAATTGACCCAAACACTTAAAATCTAAA
131 TGACCCATTACACCCCAAACCCAATTAGGCCAATTCCAAATTGACCCAAACACCTAAAACCTAAA
* * *
83778 ACAAAAATATCAAACCCTAAAACCTACTACCATCTCAACTTATGCTGCTAGCACCTCTTCCCCGT
196 ACAAAAAGATCAAACCCTAAAACCTACTACCACCCCAACTTATGCTGCTAGCACCTCTTCCCCGT
* * * ** *
83843 CTAGCCAGAGGCCGCCACGTCAGTAACCAGTTGCACCA-TCGCCACTGTTACCACCAAGTTGCAC
261 CCAGCCAAAGGCCGCCACGTCAGCAACCAACTGCACCACT-GCCACTGCTACCACCAAGTTGCAC
*
83907 CACCGTCACTGGCACCTGCAAAAGGAAGAATAAGACAAGCATTAAATGGAAAAACAAATTGTAAT
325 CACCGTCACTGGCACCTGCAAAAGGAAGAATAAGACAAGCATTAAATAGAAAAACAAATTGTAAT
** *
83972 GATTGTAATTTAGGCTATAAAGCCAAAATTGAAAACAAAATGTAAGGTTACGAACTTTCTGTTAA
390 GATTGTAATTTAGGCTATAAAGCCAAAATTGAAAACAAAATGTAAAATTACGAACTTTCAGTTAA
*
84037 AACACTTGAGATTAATACAAAGACAGAAACAGTGCACTTATAAAGGAAGATATCAGTACTCAAAG
455 AACACTTGAGATTAATACAAAGACAGAAACAGTGCACTTATAAAGGAAGATATCAGCACTCAAAG
* * * *
84102 CAATAGGACACACAAGGCAATATTCAAAGTTAAGCAAACAAGTAATCAATATCTCGAGAAAGTTG
520 CAATAGGAAACACAAGGCAATATTCAAAGTCAAGCAAACAAGCAATCAACATCTCGAGAAAGTTG
* *
84167 AATACTAAACAGTTCACATCAGTCCAAGTATACATCCCTAGTAAGCATTCATTCATTAATATTAA
585 AATACTAAACAGTTCACATCAGTCCAAGTATACATCCCCAGTAAGCATTCATTCATTAATACTAA
*
84232 CCCTTTAAATTTCAAACTGTCTGCATCCTCTGTACATATTTATTAATACCTATTATTTATTATAT
650 CCCTTTAAATTTCAAACTGTATGCATCCTCTGTACATATTTATTAATACCTATTATTTATTATAT
* *
84297 TATCATTTTTCATTTATTATTTCGAAACTAGCCTTTAATGAGTAGTAATTATAATGACTTTAATA
715 TACCATTTATCATTTATTATTTCGAAACTAGCCTTTAATGAGTAGTAATTATAATGACTTTAATA
*
84362 ATAATATTAATAA
780 ATAATAATAATAA
84375 ATATTAATTT
Statistics
Matches: 733, Mismatches: 56, Indels: 5
0.92 0.07 0.01
Matches are distributed among these distances:
822 1 0.00
823 491 0.67
824 240 0.33
825 1 0.00
ACGTcount: A:0.40, C:0.20, G:0.12, T:0.28
Consensus pattern (824 bp):
AATTTGAAATGGTTTTAAACTTAATATTAAATTAAATTTGAAAGCCCAAAATACAAACTCAAACA
GAATGTACATTTTTACAAACCCAAAAGCCCATTTTACAAACCCAGATAAGGGCCCAATTTTGATT
TGACCCATTACACCCCAAACCCAATTAGGCCAATTCCAAATTGACCCAAACACCTAAAACCTAAA
ACAAAAAGATCAAACCCTAAAACCTACTACCACCCCAACTTATGCTGCTAGCACCTCTTCCCCGT
CCAGCCAAAGGCCGCCACGTCAGCAACCAACTGCACCACTGCCACTGCTACCACCAAGTTGCACC
ACCGTCACTGGCACCTGCAAAAGGAAGAATAAGACAAGCATTAAATAGAAAAACAAATTGTAATG
ATTGTAATTTAGGCTATAAAGCCAAAATTGAAAACAAAATGTAAAATTACGAACTTTCAGTTAAA
ACACTTGAGATTAATACAAAGACAGAAACAGTGCACTTATAAAGGAAGATATCAGCACTCAAAGC
AATAGGAAACACAAGGCAATATTCAAAGTCAAGCAAACAAGCAATCAACATCTCGAGAAAGTTGA
ATACTAAACAGTTCACATCAGTCCAAGTATACATCCCCAGTAAGCATTCATTCATTAATACTAAC
CCTTTAAATTTCAAACTGTATGCATCCTCTGTACATATTTATTAATACCTATTATTTATTATATT
ACCATTTATCATTTATTATTTCGAAACTAGCCTTTAATGAGTAGTAATTATAATGACTTTAATAA
TAATAATAATAATAATAATAATAATAATAATAATAATAAATATT
Found at i:85507 original size:29 final size:30
Alignment explanation
Indices: 85467--85662 Score: 199
Period size: 29 Copynumber: 6.7 Consensus size: 30
85457 CCTAAGAGGT
85467 CCTTAAACTTTCCAAAAATTACA-TTTGAC
1 CCTTAAACTTTCCAAAAATTACATTTTGAC
* * *
85496 CCCTAAATTTTCCAAAAATTGCATTTTGAC
1 CCTTAAACTTTCCAAAAATTACATTTTGAC
* *
85526 CCTTAAACTTTCC-AAAATTACATTTTTAA
1 CCTTAAACTTTCCAAAAATTACATTTTGAC
*
85555 CCTTAAA-TTTCTCAAAAATTACATTTTCAC
1 CCTTAAACTTTC-CAAAAATTACATTTTGAC
** * * *
85585 CCTCGAAC-TTCCAAAAATTCCCTTTTTAAC
1 CCTTAAACTTTCCAAAAATT-ACATTTTGAC
* *
85615 CC-TAAA-TTTCTCAAAAACTACATTTTCAC
1 CCTTAAACTTTC-CAAAAATTACATTTTGAC
85644 CCTTAAAC-TTCCAAAAATT
1 CCTTAAACTTTCCAAAAATT
85663 CCCTTTTTAA
Statistics
Matches: 136, Mismatches: 22, Indels: 18
0.77 0.12 0.10
Matches are distributed among these distances:
28 4 0.03
29 70 0.51
30 62 0.46
ACGTcount: A:0.36, C:0.26, G:0.02, T:0.36
Consensus pattern (30 bp):
CCTTAAACTTTCCAAAAATTACATTTTGAC
Found at i:85526 original size:30 final size:29
Alignment explanation
Indices: 85470--85932 Score: 198
Period size: 29 Copynumber: 15.8 Consensus size: 29
85460 AAGAGGTCCT
*
85470 TAAACTTTCCAAAAATTACA-TTTGACCCC
1 TAAA-TTTCCAAAAATTACATTTTCACCCC
* * *
85499 TAAATTTTCCAAAAATTGCATTTTGACCCT
1 TAAA-TTTCCAAAAATTACATTTTCACCCC
* * *
85529 TAAACTTTCC-AAAATTACATTTTTAACCT
1 TAAA-TTTCCAAAAATTACATTTTCACCCC
85558 TAAATTTCTCAAAAATTACATTTTCA-CCC
1 TAAATTTC-CAAAAATTACATTTTCACCCC
* * * * * *
85587 TCGAACTTCCAAAAATTCCCTTTTTAACCC
1 T-AAATTTCCAAAAATTACATTTTCACCCC
* *
85617 TAAATTTCTCAAAAACTACATTTTCACCCT
1 TAAATTTC-CAAAAATTACATTTTCACCCC
* * * * *
85647 TAAACTTCCAAAAATTCCCTTTTTA-ACC
1 TAAATTTCCAAAAATTACATTTTCACCCC
* * *
85675 TCGAACTTCC-AAAATTACCATTTT-ACCAC
1 T-AAATTTCCAAAAATTA-CATTTTCACCCC
* ** * * *
85704 -AGATGTT-TGAAAATTCCATTTTTGACCTC
1 TAAAT-TTCCAAAAATTACA-TTTTCACCCC
* * *
85733 GAAATTTTCTAAAATTACCATTTT-A-CCC
1 TAAATTTCCAAAAATTA-CATTTTCACCCC
** * * *
85761 TGGATGTCCAAAAATTTCATTTTTGA-CCC
1 TAAATTTCCAAAAATTACA-TTTTCACCCC
* *
85790 AAAACTTTCCAAAAATTACCATTTT-ACCCT
1 TAAA-TTTCCAAAAATTA-CATTTTCACCCC
* * *
85820 TGAATATCCAAAAATTCCATTTTTCACCCC
1 TAAATTTCCAAAAATTACA-TTTTCACCCC
* * *
85850 AAAATTTCAAAAAATTACCATTTT-ACGCC
1 TAAATTTCCAAAAATTA-CATTTTCACCCC
** * * *
85879 TGGATGTCCAAAAAATCCATTTTTCACCCC
1 TAAATTTCCAAAAATTACA-TTTTCACCCC
*
85909 -AAACTTTCCAAAAATCACCATTTT
1 TAAA-TTTCCAAAAATTA-CATTTT
85933 GCCCCAAGGG
Statistics
Matches: 323, Mismatches: 83, Indels: 55
0.70 0.18 0.12
Matches are distributed among these distances:
27 5 0.02
28 45 0.14
29 134 0.41
30 131 0.41
31 8 0.02
ACGTcount: A:0.35, C:0.25, G:0.04, T:0.35
Consensus pattern (29 bp):
TAAATTTCCAAAAATTACATTTTCACCCC
Found at i:85829 original size:29 final size:30
Alignment explanation
Indices: 85734--85932 Score: 103
Period size: 30 Copynumber: 6.8 Consensus size: 30
85724 TTTGACCTCG
* *
85734 AAATTTTCTAAAATTACCATTTT-ACCC-T
1 AAATTTCCAAAAATTACCATTTTCACCCTT
** * * * *
85762 GGATGTCCAAAAATT-TCATTTTTGACCC-A
1 AAATTTCCAAAAATTACCA-TTTTCACCCTT
85791 AAACTTTCCAAAAATTACCATTTT-ACCCTT
1 AAA-TTTCCAAAAATTACCATTTTCACCCTT
* * **
85821 GAATATCCAAAAATT-CCATTTTTCACCCCA
1 AAATTTCCAAAAATTACCA-TTTTCACCCTT
*
85851 AAATTTCAAAAAATTACCATTTT-ACGCC-T
1 AAATTTCCAAAAATTACCATTTTCAC-CCTT
** * * *
85880 GGATGTCCAAAAAAT-CCATTTTTCACCC-C
1 AAATTTCCAAAAATTACCA-TTTTCACCCTT
*
85909 AAACTTTCCAAAAATCACCATTTT
1 AAA-TTTCCAAAAATTACCATTTT
85933 GCCCCAAGGG
Statistics
Matches: 127, Mismatches: 31, Indels: 24
0.70 0.17 0.13
Matches are distributed among these distances:
27 2 0.02
28 20 0.16
29 43 0.34
30 54 0.43
31 8 0.06
ACGTcount: A:0.36, C:0.25, G:0.05, T:0.34
Consensus pattern (30 bp):
AAATTTCCAAAAATTACCATTTTCACCCTT
Found at i:85874 original size:59 final size:59
Alignment explanation
Indices: 85477--85932 Score: 343
Period size: 59 Copynumber: 7.8 Consensus size: 59
85467 CCTTAAACTT
* * * * *
85477 TCCAAAAATTACA--TTTGACCCCTAAATTTTCCAAAAATT-GCATTTTGACCCTTAAACTT
1 TCCAAAAATTCCATTTTTGACCCC-AAAATTTCCAAAAATTACCATTTT-ACCCTTGAA-TG
* * ** *
85536 TCC-AAAATTACATTTTT-AACCTTAAATTTCTCAAAAATTA-CATTTTCACCCTCGAACT-
1 TCCAAAAATTCCATTTTTGACCCCAAAATTTC-CAAAAATTACCATTTT-ACCCTTGAA-TG
* * * * *
85594 TCCAAAAATTCCCTTTTT-AACCCTAAATTTCTCAAAAACTA-CATTTTCACCCTTAAACT-
1 TCCAAAAATTCCATTTTTGACCCCAAAATTTC-CAAAAATTACCATTTT-ACCCTTGAA-TG
* * * * * *
85653 TCCAAAAATTCCCTTTTTAACCTC-GAACTTCC-AAAATTACCATTTTACCAC-AG-ATG
1 TCCAAAAATTCCATTTTTGACCCCAAAATTTCCAAAAATTACCATTTTACC-CTTGAATG
*** * * * * *
85709 TTTGAAAATTCCATTTTTGACCTCGAAATTTTCTAAAATTACCATTTTACCC-TGGATG
1 TCCAAAAATTCCATTTTTGACCCCAAAATTTCCAAAAATTACCATTTTACCCTTGAATG
* *
85767 TCCAAAAATTTCATTTTTGA-CCCAAAACTTTCCAAAAATTACCATTTTACCCTTGAATA
1 TCCAAAAATTCCATTTTTGACCCCAAAA-TTTCCAAAAATTACCATTTTACCCTTGAATG
* * *
85826 TCCAAAAATTCCATTTTTCACCCCAAAATTTCAAAAAATTACCATTTTACGCC-TGGATG
1 TCCAAAAATTCCATTTTTGACCCCAAAATTTCCAAAAATTACCATTTTAC-CCTTGAATG
* * * *
85885 TCCAAAAAATCCATTTTTCACCCCAAACTTTCCAAAAATCACCATTTT
1 TCCAAAAATTCCATTTTTGACCCCAAAATTTCCAAAAATTACCATTTT
85933 GCCCCAAGGG
Statistics
Matches: 333, Mismatches: 48, Indels: 32
0.81 0.12 0.08
Matches are distributed among these distances:
55 1 0.00
56 20 0.06
57 21 0.06
58 84 0.25
59 192 0.58
60 15 0.05
ACGTcount: A:0.35, C:0.25, G:0.04, T:0.35
Consensus pattern (59 bp):
TCCAAAAATTCCATTTTTGACCCCAAAATTTCCAAAAATTACCATTTTACCCTTGAATG
Found at i:88109 original size:25 final size:25
Alignment explanation
Indices: 88081--88129 Score: 98
Period size: 25 Copynumber: 2.0 Consensus size: 25
88071 TAAAAGGTGG
88081 TTTTTAGAACAAATAAAAAAAATGT
1 TTTTTAGAACAAATAAAAAAAATGT
88106 TTTTTAGAACAAATAAAAAAAATG
1 TTTTTAGAACAAATAAAAAAAATG
88130 ATAGGTCTAA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 24 1.00
ACGTcount: A:0.57, C:0.04, G:0.08, T:0.31
Consensus pattern (25 bp):
TTTTTAGAACAAATAAAAAAAATGT
Found at i:89179 original size:12 final size:12
Alignment explanation
Indices: 89162--89196 Score: 52
Period size: 12 Copynumber: 2.9 Consensus size: 12
89152 ACTAGACAGA
89162 CATGCATACATG
1 CATGCATACATG
* *
89174 CATGCATGCACG
1 CATGCATACATG
89186 CATGCATACAT
1 CATGCATACAT
89197 ATATGTATAT
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
12 19 1.00
ACGTcount: A:0.31, C:0.29, G:0.17, T:0.23
Consensus pattern (12 bp):
CATGCATACATG
Found at i:90359 original size:3 final size:3
Alignment explanation
Indices: 90351--90392 Score: 84
Period size: 3 Copynumber: 14.0 Consensus size: 3
90341 AAAGCATCAA
90351 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
90393 ATAAGATGAA
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 39 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TAT
Found at i:91447 original size:13 final size:13
Alignment explanation
Indices: 91415--91447 Score: 50
Period size: 12 Copynumber: 2.6 Consensus size: 13
91405 ATAATTCAAA
91415 ATTCGAATTTTTT
1 ATTCGAATTTTTT
*
91428 -TTTGAATTTTTT
1 ATTCGAATTTTTT
91440 ATTCGAAT
1 ATTCGAAT
91448 CAAGTTTTTC
Statistics
Matches: 17, Mismatches: 2, Indels: 2
0.81 0.10 0.10
Matches are distributed among these distances:
12 11 0.65
13 6 0.35
ACGTcount: A:0.24, C:0.06, G:0.09, T:0.61
Consensus pattern (13 bp):
ATTCGAATTTTTT
Found at i:93334 original size:59 final size:58
Alignment explanation
Indices: 93251--93531 Score: 198
Period size: 59 Copynumber: 4.8 Consensus size: 58
93241 AGTTTAAAGT
* * *
93251 AAAAATGTAATTTTTGAAAAGTTCGAGGGTTAAA-GTGTAATTTTTGGTGAAATCGAGGTC
1 AAAAATG-AAATTTTGAAAAGTTCGAGGGTAAAATG-GTAATTTTTAGTGAAATCG-GGTC
* * *
93311 AAAAATGAAATTTTGGAACGTTCGAGGGTAAAATGGTAATTTTTAGTGAAATTGGGTC
1 AAAAATGAAATTTTGAAAAGTTCGAGGGTAAAATGGTAATTTTTAGTGAAATCGGGTC
* ** * * * * * *
93369 AAAAATGCAATTTTGTAAATTTTAGGGGGTAAAATGGTAACTTTTGGTAAAATCAAGGTC
1 AAAAATGAAATTTTG-AAAAGTTCGAGGGTAAAATGGTAATTTTTAGTGAAATC-GGGTC
** * * * *
93429 AAAAAT-AGTTTTTGGGAAAATTTTGA-GGTGAAATGGTAA-TTTTGGTGAAATCAGGGGTC
1 AAAAATGAAATTTT--GAAAAGTTCGAGGGTAAAATGGTAATTTTTAGTGAAATC--GGGTC
* * * *
93488 -AAAATGGAATTTTGGAAAGTT-TAAGGTAAAAAT-GTAATTTTTAG
1 AAAAATGAAATTTTGAAAAGTTCGAGGGT-AAAATGGTAATTTTTAG
93532 AAAGTTTAGG
Statistics
Matches: 176, Mismatches: 35, Indels: 22
0.76 0.15 0.09
Matches are distributed among these distances:
56 1 0.01
57 13 0.07
58 44 0.25
59 92 0.52
60 25 0.14
61 1 0.01
ACGTcount: A:0.37, C:0.04, G:0.25, T:0.34
Consensus pattern (58 bp):
AAAAATGAAATTTTGAAAAGTTCGAGGGTAAAATGGTAATTTTTAGTGAAATCGGGTC
Found at i:93351 original size:29 final size:28
Alignment explanation
Indices: 93192--93353 Score: 77
Period size: 29 Copynumber: 5.6 Consensus size: 28
93182 ATACCCGGGA
* *
93192 GTAAAATAGTAATTTTGGAAATTC-ATGGG
1 GTAAAATGGTAATTTTGGAAGTTCGA--GG
* **
93221 GTAAAATGGTAATTTTGGAAAGTT-TAAA
1 GTAAAATGGTAATTTTGG-AAGTTCGAGG
*
93249 GTAAAAAT-GTAATTTTTGAAAAGTTCGAGG
1 GT-AAAATGGTAA-TTTTG-GAAGTTCGAGG
* *
93279 GTTAAA-GTGTAATTTTTGGTGAA-ATCGA-G
1 GTAAAATG-GTAA-TTTT-G-GAAGTTCGAGG
*
93308 GTCAAAAAT-GAAATTTTGGAACGTTCGAGG
1 GT--AAAATGGTAATTTTGGAA-GTTCGAGG
93338 GTAAAATGGTAATTTT
1 GTAAAATGGTAATTTT
93354 TAGTGAAATT
Statistics
Matches: 101, Mismatches: 16, Indels: 32
0.68 0.11 0.21
Matches are distributed among these distances:
27 3 0.03
28 12 0.12
29 53 0.52
30 27 0.27
31 6 0.06
ACGTcount: A:0.38, C:0.04, G:0.24, T:0.35
Consensus pattern (28 bp):
GTAAAATGGTAATTTTGGAAGTTCGAGG
Found at i:93521 original size:58 final size:58
Alignment explanation
Indices: 93287--93529 Score: 217
Period size: 59 Copynumber: 4.2 Consensus size: 58
93277 GGGTTAAAGT
* * * *
93287 GTAATTTTTGGTGAAATCGAGGTCAAAAATGAAATTTTGGAACGTTCGAGGGTAAAATG
1 GTAATTTTTGGTGAAATCGAGGTCAAAAATGGAATTTTGGAAAGTT-TAAGGTAAAATG
* * * * * *
93346 GTAATTTTTAGTGAAATTG-GGTCAAAAATGCAATTTTGTAAATTTTAGGGGGTAAAATG
1 GTAATTTTTGGTGAAATCGAGGTCAAAAATGGAATTTTGGAAAGTTTA--AGGTAAAATG
* * * * * * * *
93405 GTAACTTTTGGTAAAATCAAGGTCAAAAATAG-TTTTTGGGAAAATTTTGAGGTGAAATG
1 GTAATTTTTGGTGAAATCGAGGTCAAAAATGGAATTTT-GG-AAAGTTTAAGGTAAAATG
*
93464 GTAA-TTTTGGTGAAATCAGGGGTC-AAAATGGAATTTTGGAAAGTTTAAGGTAAAAAT-
1 GTAATTTTTGGTGAAATC-GAGGTCAAAAATGGAATTTTGGAAAGTTTAAGGT-AAAATG
93521 GTAATTTTT
1 GTAATTTTT
93530 AGAAAGTTTA
Statistics
Matches: 148, Mismatches: 27, Indels: 19
0.76 0.14 0.10
Matches are distributed among these distances:
57 15 0.10
58 50 0.34
59 65 0.44
60 11 0.07
61 7 0.05
ACGTcount: A:0.36, C:0.05, G:0.25, T:0.35
Consensus pattern (58 bp):
GTAATTTTTGGTGAAATCGAGGTCAAAAATGGAATTTTGGAAAGTTTAAGGTAAAATG
Found at i:93569 original size:29 final size:28
Alignment explanation
Indices: 93483--93571 Score: 115
Period size: 29 Copynumber: 3.1 Consensus size: 28
93473 GTGAAATCAG
* *
93483 GGGTCAAAATGGAATTTTGGAAAGTTTA
1 GGGTCAAAATGTAATTTTAGAAAGTTTA
* *
93511 AGGTAAAAATGTAATTTTTAGAAAGTTTA
1 GGGTCAAAATGTAA-TTTTAGAAAGTTTA
*
93540 GGGTCAAAATGTAATTTCTAGATAGTTTA
1 GGGTCAAAATGTAATTT-TAGAAAGTTTA
93569 GGG
1 GGG
93572 ACCTCCAAGG
Statistics
Matches: 52, Mismatches: 7, Indels: 3
0.84 0.11 0.05
Matches are distributed among these distances:
28 14 0.27
29 38 0.73
ACGTcount: A:0.37, C:0.03, G:0.25, T:0.35
Consensus pattern (28 bp):
GGGTCAAAATGTAATTTTAGAAAGTTTA
Found at i:94239 original size:23 final size:23
Alignment explanation
Indices: 94213--94268 Score: 103
Period size: 23 Copynumber: 2.4 Consensus size: 23
94203 TTGTCGATGT
94213 ACGCACCGTCGACTCCGCCTGCC
1 ACGCACCGTCGACTCCGCCTGCC
94236 ACGCACCGTCGACTCCGCCTGCC
1 ACGCACCGTCGACTCCGCCTGCC
*
94259 ACGCGCCGTC
1 ACGCACCGTC
94269 CCCGGGGCCG
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
23 32 1.00
ACGTcount: A:0.12, C:0.52, G:0.23, T:0.12
Consensus pattern (23 bp):
ACGCACCGTCGACTCCGCCTGCC
Found at i:94906 original size:16 final size:17
Alignment explanation
Indices: 94879--94911 Score: 50
Period size: 16 Copynumber: 2.0 Consensus size: 17
94869 TGTTAGGATT
*
94879 TAAATCATGAATGATAA
1 TAAATCATGAATAATAA
94896 TAAAT-ATGAATAATAA
1 TAAATCATGAATAATAA
94912 ATATGCATTA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 10 0.67
17 5 0.33
ACGTcount: A:0.58, C:0.03, G:0.09, T:0.30
Consensus pattern (17 bp):
TAAATCATGAATAATAA
Found at i:94910 original size:13 final size:13
Alignment explanation
Indices: 94892--94916 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
94882 ATCATGAATG
94892 ATAATAAATATGA
1 ATAATAAATATGA
94905 ATAATAAATATG
1 ATAATAAATATG
94917 CATTAAGTAC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.60, C:0.00, G:0.08, T:0.32
Consensus pattern (13 bp):
ATAATAAATATGA
Found at i:95559 original size:6 final size:6
Alignment explanation
Indices: 95486--95603 Score: 75
Period size: 6 Copynumber: 20.0 Consensus size: 6
95476 ATGAACTTTG
* * * *
95486 AATTTA ATTTTA AAGTTTA AGTTTTA AAATT- -ATTTCA AATTTA AA-CTA
1 AATTTA AATTTA AA-TTTA A-ATTTA AATTTA AATTT-A AATTTA AATTTA
* ** ** *
95534 AATTGA AATTTA AA-ACA AATTTA AATTTA AAAATG AATTTA AATTTA
1 AATTTA AATTTA AATTTA AATTTA AATTTA AATTTA AATTTA AATTTA
*
95581 AATTTA AA-GTA AATTTA AATTTA
1 AATTTA AATTTA AATTTA AATTTA
95604 GAAATAAATC
Statistics
Matches: 82, Mismatches: 22, Indels: 16
0.68 0.18 0.13
Matches are distributed among these distances:
4 3 0.04
5 11 0.13
6 54 0.66
7 14 0.17
ACGTcount: A:0.50, C:0.03, G:0.04, T:0.43
Consensus pattern (6 bp):
AATTTA
Found at i:95577 original size:41 final size:41
Alignment explanation
Indices: 95527--95617 Score: 121
Period size: 41 Copynumber: 2.2 Consensus size: 41
95517 ATTTCAAATT
95527 TAAA-CTAAATTGAAATTTAAAACAAATTTAAATTTAAAAA
1 TAAATCTAAATTGAAATTTAAAACAAATTTAAATTTAAAAA
* * * ** *
95567 TGAATTTAAATTTAAATTTAAAGTAAATTTAAATTTAGAAA
1 TAAATCTAAATTGAAATTTAAAACAAATTTAAATTTAAAAA
95608 TAAATCTAAA
1 TAAATCTAAA
95618 ATAATTTAAA
Statistics
Matches: 42, Mismatches: 8, Indels: 1
0.82 0.16 0.02
Matches are distributed among these distances:
40 3 0.07
41 39 0.93
ACGTcount: A:0.56, C:0.03, G:0.04, T:0.36
Consensus pattern (41 bp):
TAAATCTAAATTGAAATTTAAAACAAATTTAAATTTAAAAA
Found at i:95617 original size:18 final size:17
Alignment explanation
Indices: 95508--95582 Score: 80
Period size: 17 Copynumber: 4.4 Consensus size: 17
95498 AAGTTTAAGT
*
95508 TTTAAAAT-TATTTCAAA
1 TTTAAAATAAATTT-AAA
* *
95525 TTTAAACTAAATTGAAA
1 TTTAAAATAAATTTAAA
*
95542 TTTAAAACAAATTTAAA
1 TTTAAAATAAATTTAAA
*
95559 TTTAAAAATGAATTTAAA
1 TTT-AAAATAAATTTAAA
95577 TTTAAA
1 TTTAAA
95583 TTTAAAGTAA
Statistics
Matches: 48, Mismatches: 8, Indels: 4
0.80 0.13 0.07
Matches are distributed among these distances:
17 30 0.62
18 18 0.38
ACGTcount: A:0.53, C:0.04, G:0.03, T:0.40
Consensus pattern (17 bp):
TTTAAAATAAATTTAAA
Found at i:96251 original size:49 final size:47
Alignment explanation
Indices: 96191--96400 Score: 156
Period size: 49 Copynumber: 4.6 Consensus size: 47
96181 ATTTGGTCTT
*
96191 CTTCTCAGTATCTCATCAGGAAGATGACTGCATCGTTTGTTTCAATCCG
1 CTTCTCTGTATCTCATCAGGAAGATGAC--CATCGTTTGTTTCAATCCG
* *
96240 CTTCTCTGTATCTCATCAGGAAGATGA--A-------TTT-AGTCCA
1 CTTCTCTGTATCTCATCAGGAAGATGACCATCGTTTGTTTCAATCCG
* ** * ** ** *
96277 CTTCTCAGTATCTCATCAGGAACCTAACCATTTTATTACTTCGA-CCTG
1 CTTCTCTGTATCTCATCAGGAAGATGACCATCGT-TTGTTTCAATCC-G
96325 CTTCT-TAGTATCTCATCAGGAAGATGACCGCATCGTTTGTTTCAATCCG
1 CTTCTCT-GTATCTCATCAGGAAGATGA-C-CATCGTTTGTTTCAATCCG
*
96374 CTTCTCTGTATCTCATCAAGAAGATGA
1 CTTCTCTGTATCTCATCAGGAAGATGA
96401 ATTTGGTCCA
Statistics
Matches: 123, Mismatches: 21, Indels: 34
0.69 0.12 0.19
Matches are distributed among these distances:
37 27 0.22
38 3 0.02
39 1 0.01
45 1 0.01
47 4 0.03
48 22 0.18
49 58 0.47
50 7 0.06
ACGTcount: A:0.25, C:0.25, G:0.16, T:0.35
Consensus pattern (47 bp):
CTTCTCTGTATCTCATCAGGAAGATGACCATCGTTTGTTTCAATCCG
Found at i:96431 original size:134 final size:134
Alignment explanation
Indices: 96191--96481 Score: 485
Period size: 134 Copynumber: 2.2 Consensus size: 134
96181 ATTTGGTCTT
* *
96191 CTTCTCAGTATCTCATCAGGAAGATGACTGCATCGTTTGTTTCAATCCGCTTCTCTGTATCTCAT
1 CTTCTTAGTATCTCATCAGGAAGATGACCGCATCGTTTGTTTCAATCCGCTTCTCTGTATCTCAT
*
96256 CAGGAAGATGAATTTAGTCCACTTCTCAGTATCTCATCAGGAACCTAACCATTTTATTACTTCGA
66 CAAGAAGATGAATTTAGTCCACTTCTCAGTATCTCATCAGGAACCTAACCATTTTATTACTTCGA
96321 CCTG
131 CCTG
96325 CTTCTTAGTATCTCATCAGGAAGATGACCGCATCGTTTGTTTCAATCCGCTTCTCTGTATCTCAT
1 CTTCTTAGTATCTCATCAGGAAGATGACCGCATCGTTTGTTTCAATCCGCTTCTCTGTATCTCAT
* * * * *
96390 CAAGAAGATGAATTTGGTCCACTTCTCGGTATCTTATCAGGAAGCTAATCATTTTATTACTTCGA
66 CAAGAAGATGAATTTAGTCCACTTCTCAGTATCTCATCAGGAACCTAACCATTTTATTACTTCGA
96455 CCTG
131 CCTG
*
96459 CTT-TTCGGTATCTCATCAGGAAG
1 CTTCTT-AGTATCTCATCAGGAAG
96482 CTGGGGTTCG
Statistics
Matches: 147, Mismatches: 9, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
133 2 0.01
134 145 0.99
ACGTcount: A:0.24, C:0.24, G:0.16, T:0.36
Consensus pattern (134 bp):
CTTCTTAGTATCTCATCAGGAAGATGACCGCATCGTTTGTTTCAATCCGCTTCTCTGTATCTCAT
CAAGAAGATGAATTTAGTCCACTTCTCAGTATCTCATCAGGAACCTAACCATTTTATTACTTCGA
CCTG
Found at i:96618 original size:340 final size:340
Alignment explanation
Indices: 95975--96687 Score: 1072
Period size: 340 Copynumber: 2.1 Consensus size: 340
95965 GGTTTCATTG
* * * *
95975 ACTT-GACCTTCTTCTCAGTATCTTATCAAGAAGATGACTGCATCACTTGTTTCGATCCACTTCT
1 ACTTCGACCTGCTTCTCAGTATCTCATCAAGAAGATGACCGCATCACTTGTTTCAATCCACTTCT
* * * * * *
96039 CTGTGTTTCATTAGGAAGACGGATTAGGTTCACTTCTCCGTACCTCATCAGGAAGCTAACCACTT
66 CTGTATCTCATCAAGAAGACGAATTAGGTCCACTTCTCCGTACCTCATCAGGAAGCTAACCACTT
* * *
96104 TATTGCTTCGACCTGCTTCTCAGTATCTCATCAGGAAGCTAGGGTTTGAAGATTTGTTCATATCG
131 TATTACTTCGACCTGCTTCTCAGTATCTCATCAGGAAGCTAGGGTTCGAAGATTTGCTCATATCG
*
96169 AGCGTGGGTTTGATTTGGTCTTCTTCTCAGTATCTCATCAGGAAGATGACTGCATCGTTTGTTTC
196 AGCGTGAGTTTGATTTGGTCTTCTTCTCAGTATCTCATCAGGAAGATGACTGCATCGTTTGTTTC
** *
96234 AATCCGCTTCTCTGTATCTCATCAGGAAGATGAATTTAGTCCACTTCTC-AGTATCTCATCAGGA
261 AATCCGCTTCTCTGTATCTCATCAGGAAGACAAATTTAGTCCACTTCTCGA-TATCTCATCAGAA
96298 ACCTAACCATTTTATT
325 ACCTAACCATTTTATT
* * ** *
96314 ACTTCGACCTGCTTCTTAGTATCTCATCAGGAAGATGACCGCATCGTTTGTTTCAATCCGCTTCT
1 ACTTCGACCTGCTTCTCAGTATCTCATCAAGAAGATGACCGCATCACTTGTTTCAATCCACTTCT
* * * * * * *
96379 CTGTATCTCATCAAGAAGATGAATTTGGTCCACTTCTCGGTATCTTATCAGGAAGCTAATCATTT
66 CTGTATCTCATCAAGAAGACGAATTAGGTCCACTTCTCCGTACCTCATCAGGAAGCTAACCACTT
* * *
96444 TATTACTTCGACCTGCTTTTCGGTATCTCATCAGGAAGCTGGGGTTCGAAGATTTGCTCATATCG
131 TATTACTTCGACCTGCTTCTCAGTATCTCATCAGGAAGCTAGGGTTCGAAGATTTGCTCATATCG
*
96509 AGCGTGAGTTTGATTTGGTCTTCTTCTCAGTATCTCATCAGGAAGATGACCT-CCTCGTTTGTTT
196 AGCGTGAGTTTGATTTGGTCTTCTTCTCAGTATCTCATCAGGAAGATGA-CTGCATCGTTTGTTT
*
96573 CAATCCGCTTCTCTGTATCTCATCAGGAAGACAAATTTGGTCCACTTCTCGATATCTCATCAGAA
260 CAATCCGCTTCTCTGTATCTCATCAGGAAGACAAATTTAGTCCACTTCTCGATATCTCATCAGAA
*
96638 AGCTAACCATTTTATT
325 ACCTAACCATTTTATT
96654 ACTTCGACCTGCTTCTCAGTATCTCATCAAGAAG
1 ACTTCGACCTGCTTCTCAGTATCTCATCAAGAAG
96688 CTAAGGTTCG
Statistics
Matches: 334, Mismatches: 37, Indels: 5
0.89 0.10 0.01
Matches are distributed among these distances:
339 4 0.01
340 327 0.98
341 3 0.01
ACGTcount: A:0.23, C:0.23, G:0.18, T:0.36
Consensus pattern (340 bp):
ACTTCGACCTGCTTCTCAGTATCTCATCAAGAAGATGACCGCATCACTTGTTTCAATCCACTTCT
CTGTATCTCATCAAGAAGACGAATTAGGTCCACTTCTCCGTACCTCATCAGGAAGCTAACCACTT
TATTACTTCGACCTGCTTCTCAGTATCTCATCAGGAAGCTAGGGTTCGAAGATTTGCTCATATCG
AGCGTGAGTTTGATTTGGTCTTCTTCTCAGTATCTCATCAGGAAGATGACTGCATCGTTTGTTTC
AATCCGCTTCTCTGTATCTCATCAGGAAGACAAATTTAGTCCACTTCTCGATATCTCATCAGAAA
CCTAACCATTTTATT
Found at i:96698 original size:206 final size:206
Alignment explanation
Indices: 96325--96979 Score: 954
Period size: 206 Copynumber: 3.2 Consensus size: 206
96315 CTTCGACCTG
*
96325 CTTCTTAGTATCTCATCAGGAAGATGACCGCATCGTTTGTTTCAATCCGCTTCTCTGTATCTCAT
1 CTTCTCAGTATCTCATCAGGAAGATGACCGCATCGTTTGTTTCAATCCGCTTCTCTGTATCTCAT
* * * *
96390 CAAGAAGATGAATTTGGTCCACTTCTCGGTATCTTATCAGGAAGCTAATCATTTTATTACTTCGA
66 CAGGAAGATGAATTTGGTCCACTTCTCGATATCTCATCAGGAAGCTAACCATTTTATTACTTCGA
* * *
96455 CCTGCTTTTCGGTATCTCATCAGGAAGCTGGGGTTCGAAGATTTGCTCATATCGAGCGTGAGTTT
131 CCTGCTTCTCAGTATCTCATCAAGAAGCTGGGGTTCGAAGATTTGCTCATATCGAGCGTGAGTTT
96520 GATTTGGTCTT
196 GATTTGGTCTT
* *
96531 CTTCTCAGTATCTCATCAGGAAGATGACCTCCTCGTTTGTTTCAATCCGCTTCTCTGTATCTCAT
1 CTTCTCAGTATCTCATCAGGAAGATGACCGCATCGTTTGTTTCAATCCGCTTCTCTGTATCTCAT
** *
96596 CAGGAAGACAAATTTGGTCCACTTCTCGATATCTCATCAGAAAGCTAACCATTTTATTACTTCGA
66 CAGGAAGATGAATTTGGTCCACTTCTCGATATCTCATCAGGAAGCTAACCATTTTATTACTTCGA
** *
96661 CCTGCTTCTCAGTATCTCATCAAGAAGCTAAGGTTCGAATATTTGCTCATATCGAGCGTGAGTTT
131 CCTGCTTCTCAGTATCTCATCAAGAAGCTGGGGTTCGAAGATTTGCTCATATCGAGCGTGAGTTT
**
96726 GATTTTATCTT
196 GATTTGGTCTT
* * * *
96737 CTTCTCAGTATCTCATCAGGAAGACGACCGCATCGTTTGTTTCAATCCGTTTCTCTATATCTCTT
1 CTTCTCAGTATCTCATCAGGAAGATGACCGCATCGTTTGTTTCAATCCGCTTCTCTGTATCTCAT
*
96802 CAGGAAGATGAATTTGGTCCACTTCTC-AGTATCTCATCAGGAAGCTAACCATTTTATTGCTTCG
66 CAGGAAGATGAATTTGGTCCACTTCTCGA-TATCTCATCAGGAAGCTAACCATTTTATTACTTCG
* * * * * * *
96866 ACCTGCTTCTCAATATCTCATCAAGAAGCCGGGGTTCGAAGATTTGCTCGCT-TTGAGCCTTATT
130 ACCTGCTTCTCAGTATCTCATCAAGAAGCTGGGGTTCGAAGATTTGCTC-ATATCGAGCGTGA-G
*
96930 TCATTGATTTGGTCTA
193 T--TTGATTTGGTCTT
* *
96946 CTTCTCAATATCTCATCAGGAAGATGATCGCATC
1 CTTCTCAGTATCTCATCAGGAAGATGACCGCATC
96980 ATTGTTTGTG
Statistics
Matches: 400, Mismatches: 44, Indels: 7
0.89 0.10 0.02
Matches are distributed among these distances:
205 1 0.00
206 356 0.89
207 2 0.00
209 41 0.10
ACGTcount: A:0.23, C:0.23, G:0.18, T:0.36
Consensus pattern (206 bp):
CTTCTCAGTATCTCATCAGGAAGATGACCGCATCGTTTGTTTCAATCCGCTTCTCTGTATCTCAT
CAGGAAGATGAATTTGGTCCACTTCTCGATATCTCATCAGGAAGCTAACCATTTTATTACTTCGA
CCTGCTTCTCAGTATCTCATCAAGAAGCTGGGGTTCGAAGATTTGCTCATATCGAGCGTGAGTTT
GATTTGGTCTT
Found at i:97044 original size:39 final size:39
Alignment explanation
Indices: 97000--97074 Score: 105
Period size: 39 Copynumber: 1.9 Consensus size: 39
96990 GATAATCTCA
** *
97000 ATCTGCCCCGTGATCGAGGTAGGAGATTGGTTGACGGTG
1 ATCTGCCCCAAGATCGAGGTAAGAGATTGGTTGACGGTG
* *
97039 ATCTGCCCCAAGCTCGGGGTAAGAGATTGGTTGACG
1 ATCTGCCCCAAGATCGAGGTAAGAGATTGGTTGACG
97075 ATGTAACTTC
Statistics
Matches: 31, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
39 31 1.00
ACGTcount: A:0.20, C:0.20, G:0.36, T:0.24
Consensus pattern (39 bp):
ATCTGCCCCAAGATCGAGGTAAGAGATTGGTTGACGGTG
Found at i:98589 original size:3 final size:3
Alignment explanation
Indices: 98576--98614 Score: 51
Period size: 3 Copynumber: 12.7 Consensus size: 3
98566 CTTTCCCTTT
* *
98576 TTC TTC TTTC TTC TTT TTC TTT TTC TTC TTC TTC TTC TT
1 TTC TTC -TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TT
98615 TTTTTTTTGT
Statistics
Matches: 31, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
3 28 0.90
4 3 0.10
ACGTcount: A:0.00, C:0.26, G:0.00, T:0.74
Consensus pattern (3 bp):
TTC
Found at i:98592 original size:15 final size:16
Alignment explanation
Indices: 98550--98615 Score: 75
Period size: 15 Copynumber: 4.2 Consensus size: 16
98540 TATTTTTGTT
98550 TTTCTTCTTGTTT-TTGC
1 TTTCTTCTT-TTTCTT-C
*
98567 TTTC-CCTTTTTCTTC
1 TTTCTTCTTTTTCTTC
98582 TTTCTTCTTTTTCTT-
1 TTTCTTCTTTTTCTTC
*
98597 TTTCTTCTTCTTCTTC
1 TTTCTTCTTTTTCTTC
98613 TTT
1 TTT
98616 TTTTTTTGTA
Statistics
Matches: 43, Mismatches: 3, Indels: 7
0.81 0.06 0.13
Matches are distributed among these distances:
15 22 0.51
16 17 0.40
17 4 0.09
ACGTcount: A:0.00, C:0.24, G:0.03, T:0.73
Consensus pattern (16 bp):
TTTCTTCTTTTTCTTC
Found at i:98594 original size:9 final size:9
Alignment explanation
Indices: 98572--98619 Score: 50
Period size: 9 Copynumber: 5.7 Consensus size: 9
98562 TTTGCTTTCC
98572 CTTTTTCTT
1 CTTTTTCTT
98581 C--TTTCTT
1 CTTTTTCTT
98588 CTTTTTCTT
1 CTTTTTCTT
98597 -TTTCTTCTT
1 CTTT-TTCTT
*
98606 CTTCTTCTT
1 CTTTTTCTT
98615 -TTTTT
1 CTTTTT
98620 TTTGTATCTG
Statistics
Matches: 33, Mismatches: 2, Indels: 9
0.75 0.05 0.20
Matches are distributed among these distances:
7 7 0.21
8 7 0.21
9 17 0.52
10 2 0.06
ACGTcount: A:0.00, C:0.23, G:0.00, T:0.77
Consensus pattern (9 bp):
CTTTTTCTT
Found at i:98597 original size:6 final size:6
Alignment explanation
Indices: 98579--98622 Score: 54
Period size: 6 Copynumber: 7.3 Consensus size: 6
98569 TCCCTTTTTC
* *
98579 TTCTTT CTTCTTT TTCTTT TTCTTC TTCTTC TTCTTT TT-TTT TT
1 TTCTTT -TTCTTT TTCTTT TTCTTT TTCTTT TTCTTT TTCTTT TT
98623 GTATCTGAGT
Statistics
Matches: 35, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
5 5 0.14
6 24 0.69
7 6 0.17
ACGTcount: A:0.00, C:0.20, G:0.00, T:0.80
Consensus pattern (6 bp):
TTCTTT
Found at i:99895 original size:23 final size:23
Alignment explanation
Indices: 99865--99910 Score: 92
Period size: 23 Copynumber: 2.0 Consensus size: 23
99855 GAGTTTAAGT
99865 CAACAGCAGTGTTGCTCGTATCC
1 CAACAGCAGTGTTGCTCGTATCC
99888 CAACAGCAGTGTTGCTCGTATCC
1 CAACAGCAGTGTTGCTCGTATCC
99911 TTGATATCAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.22, C:0.30, G:0.22, T:0.26
Consensus pattern (23 bp):
CAACAGCAGTGTTGCTCGTATCC
Found at i:101929 original size:58 final size:57
Alignment explanation
Indices: 101817--102122 Score: 228
Period size: 58 Copynumber: 5.3 Consensus size: 57
101807 ACAAAATTGT
* * * *
101817 AATTTTGGGAAAGTTC-GTGGTCAAAAATGG-AATTTT-G-GAAATTTCAAGGGTAAAATGT
1 AATTTT-GGAAAGTTCAGGGGT--AAAATGGTAATTTTGGTGAAA--TCGAGGTTAAAATGG
** * * *
101875 AATTTTTTAAAGTTCAGGGGTTAAATTGTAATTTTTGGTGAAATCGAGGTTAAAAATGA
1 AATTTTGGAAAGTTCAGGGGTAAAATGGTAA-TTTTGGTGAAATCGAGGTT-AAAATGG
* * * *
101934 AATTTTTGAAAGTT-TGAGGGTAAAATGGTAATTTTTAGTGAAATCGGGGTTAAAATGG
1 AATTTTGGAAAGTTCAG-GGGTAAAATGGTAA-TTTTGGTGAAATCGAGGTTAAAATGG
* * *** * * *
101992 AATTTTGTAAAGTTTAGGGGTAAAACAATAATTTTGGAGAAATCAAGGTCAAAAATGG
1 AATTTTGGAAAGTTCAGGGGTAAAATGGTAATTTTGGTGAAATCGAGGT-TAAAATGG
* * * * * *
102050 AATTTTGGAAAATTTAGGAGT-GAATGGTAATTTTGGTGAAATTAGGGGTTAAAATGG
1 AATTTTGGAAAGTTCAGGGGTAAAATGGTAATTTTGGTGAAA-TCGAGGTTAAAATGG
102107 AATTTTGGAAAGTTCA
1 AATTTTGGAAAGTTCA
102123 TGTAAAAATG
Statistics
Matches: 198, Mismatches: 40, Indels: 21
0.76 0.15 0.08
Matches are distributed among these distances:
56 5 0.03
57 59 0.30
58 79 0.40
59 51 0.26
60 4 0.02
ACGTcount: A:0.37, C:0.03, G:0.25, T:0.35
Consensus pattern (57 bp):
AATTTTGGAAAGTTCAGGGGTAAAATGGTAATTTTGGTGAAATCGAGGTTAAAATGG
Found at i:102162 original size:30 final size:30
Alignment explanation
Indices: 101809--102180 Score: 132
Period size: 29 Copynumber: 12.8 Consensus size: 30
101799 TTCAAGGGAC
* * * *
101809 AAAATTGTAATTTTGGGAAAG-TTCGTGGTCA
1 AAAA-TGTAATTTTTGGAAAGTTTAGGGGT-T
* *
101840 AAAATGGAA-TTTTGGAAA-TTTCAAGGG-T
1 AAAATGTAATTTTTGGAAAGTTT-AGGGGTT
* *
101868 AAAATGTAATTTTT-TAAAGTTCAGGGGTT
1 AAAATGTAATTTTTGGAAAGTTTAGGGGTT
* * *
101897 AAATTGTAATTTTTGGTGAAA---TCGAGGTT
1 AAAATGTAATTTTT-G-GAAAGTTTAGGGGTT
*
101926 AAAAATGAAATTTTT-GAAAGTTT-GAGGG-T
1 -AAAATGTAATTTTTGGAAAGTTTAG-GGGTT
*
101955 AAAATGGTAATTTTTAGTGAAA---TCGGGGTT
1 AAAAT-GTAATTTTT-G-GAAAGTTTAGGGGTT
* *
101985 AAAATGGAA-TTTTGTAAAGTTTAGGGG-T
1 AAAATGTAATTTTTGGAAAGTTTAGGGGTT
** * * * *
102013 AAAACAATAA-TTTTGGAGAA-ATCA-AGGTCA
1 AAAA-TGTAATTTTTGGA-AAGTTTAGGGGT-T
* * *
102043 AAAATGGAA-TTTTGGAAAATTTAGGAG-T
1 AAAATGTAATTTTTGGAAAGTTTAGGGGTT
* *
102071 -GAATGGTAATTTTGGTGAAA--TTAGGGGTT
1 AAAAT-GTAATTTTTG-GAAAGTTTAGGGGTT
* * * *
102100 AAAATGGAA-TTTTGGAAAGTTCA--TGTA
1 AAAATGTAATTTTTGGAAAGTTTAGGGGTT
*
102127 AAAATGTAATTTTTAGAAAGTTTAGGGGTT
1 AAAATGTAATTTTTGGAAAGTTTAGGGGTT
*
102157 AAAATGTAATTTTTGGATAGTTTA
1 AAAATGTAATTTTTGGAAAGTTTA
102181 TGGACCTCTA
Statistics
Matches: 248, Mismatches: 55, Indels: 77
0.65 0.14 0.20
Matches are distributed among these distances:
26 3 0.01
27 22 0.09
28 58 0.23
29 88 0.35
30 66 0.27
31 4 0.02
32 7 0.03
ACGTcount: A:0.37, C:0.03, G:0.24, T:0.36
Consensus pattern (30 bp):
AAAATGTAATTTTTGGAAAGTTTAGGGGTT
Found at i:104122 original size:17 final size:17
Alignment explanation
Indices: 104100--104156 Score: 60
Period size: 17 Copynumber: 3.4 Consensus size: 17
104090 AAGTTTAAGT
* *
104100 TTTAAAATTATTTCAAA
1 TTTAAAATAATTTAAAA
* *
104117 TTTAAACTAAATTAAAA
1 TTTAAAATAATTTAAAA
* *
104134 TTTAAAACAATTTTAAA
1 TTTAAAATAATTTAAAA
104151 TTTAAA
1 TTTAAA
104157 TTTAAAGTAA
Statistics
Matches: 32, Mismatches: 8, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
17 32 1.00
ACGTcount: A:0.53, C:0.05, G:0.00, T:0.42
Consensus pattern (17 bp):
TTTAAAATAATTTAAAA
Found at i:104140 original size:34 final size:34
Alignment explanation
Indices: 104100--104173 Score: 87
Period size: 34 Copynumber: 2.2 Consensus size: 34
104090 AAGTTTAAGT
** *
104100 TTTAAAATTATTTCAAATTTAAA-CTAAATTAAAA
1 TTTAAAACAATTTCAAATTTAAATCTAAAGT-AAA
* *
104134 TTTAAAACAATTTTAAATTTAAATTTAAAGTAAA
1 TTTAAAACAATTTCAAATTTAAATCTAAAGTAAA
104168 TTTAAA
1 TTTAAA
104174 TTTAAAAATA
Statistics
Matches: 34, Mismatches: 5, Indels: 2
0.83 0.12 0.05
Matches are distributed among these distances:
34 29 0.85
35 5 0.15
ACGTcount: A:0.53, C:0.04, G:0.01, T:0.42
Consensus pattern (34 bp):
TTTAAAACAATTTCAAATTTAAATCTAAAGTAAA
Found at i:104151 original size:23 final size:23
Alignment explanation
Indices: 104124--104180 Score: 69
Period size: 23 Copynumber: 2.4 Consensus size: 23
104114 AAATTTAAAC
*
104124 TAAATTAAAATTTAAAACAATTT
1 TAAATTAAAATTTAAAACAAATT
* **
104147 TAAATTTAAATTTAAAGTAAATT
1 TAAATTAAAATTTAAAACAAATT
104170 TAAATTTAAAA
1 TAAA-TTAAAA
104181 ATAAATCTAA
Statistics
Matches: 28, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
23 23 0.82
24 5 0.18
ACGTcount: A:0.56, C:0.02, G:0.02, T:0.40
Consensus pattern (23 bp):
TAAATTAAAATTTAAAACAAATT
Found at i:104154 original size:6 final size:6
Alignment explanation
Indices: 104078--104179 Score: 61
Period size: 6 Copynumber: 17.3 Consensus size: 6
104068 ATGGACTTTT
* * * *
104078 AATTTA ATTTTA AAGTTTA AGTTTTA AAATT- -ATTTCA AATTTA AA-CTA
1 AATTTA AATTTA AA-TTTA A-ATTTA AATTTA AATTT-A AATTTA AATTTA
* ** * *
104126 AATTAA AATTTA AA-ACA ATTTTA AATTTA AATTTA AA-GTA AATTTA
1 AATTTA AATTTA AATTTA AATTTA AATTTA AATTTA AATTTA AATTTA
104172 AATTTA AA
1 AATTTA AA
104180 AATAAATCTA
Statistics
Matches: 70, Mismatches: 18, Indels: 16
0.67 0.17 0.15
Matches are distributed among these distances:
4 3 0.04
5 10 0.14
6 43 0.61
7 14 0.20
ACGTcount: A:0.50, C:0.03, G:0.03, T:0.44
Consensus pattern (6 bp):
AATTTA
Found at i:104167 original size:17 final size:17
Alignment explanation
Indices: 104147--104179 Score: 66
Period size: 17 Copynumber: 1.9 Consensus size: 17
104137 AAAACAATTT
104147 TAAATTTAAATTTAAAG
1 TAAATTTAAATTTAAAG
104164 TAAATTTAAATTTAAA
1 TAAATTTAAATTTAAA
104180 AATAAATCTA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.55, C:0.00, G:0.03, T:0.42
Consensus pattern (17 bp):
TAAATTTAAATTTAAAG
Found at i:104998 original size:21 final size:21
Alignment explanation
Indices: 104957--104998 Score: 50
Period size: 21 Copynumber: 2.0 Consensus size: 21
104947 TTAATTTCTA
* *
104957 GAAAATGAATGAAAAATATTG
1 GAAAATGAAGGAAAAAAATTG
104978 GAAAAT-AAGGAAAATAAATTG
1 GAAAATGAAGGAAAA-AAATTG
104999 ATTAACTTGA
Statistics
Matches: 18, Mismatches: 2, Indels: 2
0.82 0.09 0.09
Matches are distributed among these distances:
20 7 0.39
21 11 0.61
ACGTcount: A:0.60, C:0.00, G:0.19, T:0.21
Consensus pattern (21 bp):
GAAAATGAAGGAAAAAAATTG
Found at i:106818 original size:30 final size:30
Alignment explanation
Indices: 106744--106906 Score: 138
Period size: 30 Copynumber: 5.5 Consensus size: 30
106734 AAAATCGAGG
* *
106744 GTCAAAATGTAATTTT-GTAAAGTTTGGG-
1 GTCAAAATGTGATTTTGGAAAAGTTTGGGA
* * * * *
106772 GTTAAAATATGTTTTTGGGAAAGCTTGGGA
1 GTCAAAATGTGATTTTGGAAAAGTTTGGGA
* *
106802 GTAAAAATGTGATTTTGGGAAAA-TTT-GTA
1 GTCAAAATGTGATTTT-GGAAAAGTTTGGGA
* *
106831 GTCAAAATGTGATTTTCGAAAAGTTTAAGG-
1 GTCAAAATGTGATTTTGGAAAAGTTT-GGGA
* * *
106861 GTTAAAATGTGATTTTGGAAAAGTTAGAGA
1 GTCAAAATGTGATTTTGGAAAAGTTTGGGA
*
106891 GTCAAAATGTAATTTT
1 GTCAAAATGTGATTTT
106907 AAAGAAATTC
Statistics
Matches: 106, Mismatches: 22, Indels: 12
0.76 0.16 0.09
Matches are distributed among these distances:
28 17 0.16
29 31 0.29
30 52 0.49
31 6 0.06
ACGTcount: A:0.36, C:0.03, G:0.25, T:0.37
Consensus pattern (30 bp):
GTCAAAATGTGATTTTGGAAAAGTTTGGGA
Found at i:106921 original size:30 final size:30
Alignment explanation
Indices: 106864--106947 Score: 109
Period size: 30 Copynumber: 2.8 Consensus size: 30
106854 TTTAAGGGTT
* * *
106864 AAAATGTGATTTTGGAA-AAGTTAGAGAGTC
1 AAAATGTAATTTTAGAAGAA-TTCGAGAGTC
106894 AAAATGTAATTTTA-AAGAAATTCGAGAGTC
1 AAAATGTAATTTTAGAAG-AATTCGAGAGTC
106924 AAAATGTAATTTTAGAAGAATTCG
1 AAAATGTAATTTTAGAAGAATTCG
106948 GGAGCTCTTT
Statistics
Matches: 48, Mismatches: 3, Indels: 6
0.84 0.05 0.11
Matches are distributed among these distances:
29 2 0.04
30 41 0.85
31 5 0.10
ACGTcount: A:0.44, C:0.05, G:0.20, T:0.31
Consensus pattern (30 bp):
AAAATGTAATTTTAGAAGAATTCGAGAGTC
Found at i:111053 original size:85 final size:85
Alignment explanation
Indices: 110837--111089 Score: 292
Period size: 85 Copynumber: 3.0 Consensus size: 85
110827 TGCTTCATTT
* * * * * * * *
110837 GATTTGGTCTACTTCTATATATCTCAT-TAGAAAGATGACCACTTCATTGATTTAATCCACTTCT
1 GATTTGGTCTACTTCTCTATATCTCATCAAG-AAGACGACCTCTTTATCGATTTGACCCACTTCT
* * *
110901 CTATATCTAATCAGGAAGACA
65 TTGTATCTCATCAGGAAGACA
* * * * * *
110922 GATTTGGTCTACTTCTCTGTATCTCATCAGGAAGATGTCCTCTTTATCGCTTTGACTCACTTCTT
1 GATTTGGTCTACTTCTCTATATCTCATCAAGAAGACGACCTCTTTATCGATTTGACCCACTTCTT
*
110987 TGTATCTCATCAAGAAGACA
66 TGTATCTCATCAGGAAGACA
* * * *
111007 GATTTGGTCTACTTCTCTATATCTCATCAAGAAGACGAGCTTTTTATTGATTTGACCCAGTTCTT
1 GATTTGGTCTACTTCTCTATATCTCATCAAGAAGACGACCTCTTTATCGATTTGACCCACTTCTT
111072 TGTATCTCATCAGGAAGA
66 TGTATCTCATCAGGAAGA
111090 TGGGGTTTGA
Statistics
Matches: 140, Mismatches: 27, Indels: 2
0.83 0.16 0.01
Matches are distributed among these distances:
85 139 0.99
86 1 0.01
ACGTcount: A:0.26, C:0.21, G:0.15, T:0.38
Consensus pattern (85 bp):
GATTTGGTCTACTTCTCTATATCTCATCAAGAAGACGACCTCTTTATCGATTTGACCCACTTCTT
TGTATCTCATCAGGAAGACA
Found at i:111285 original size:207 final size:205
Alignment explanation
Indices: 110922--111453 Score: 572
Period size: 207 Copynumber: 2.6 Consensus size: 205
110912 CAGGAAGACA
* * * *
110922 GATTTGGTCTACTTCTCTGTATCTCATCAGGAAGATG-TCCTCTTTATCGCTTTGACTCACTTCT
1 GATTTGGTCTACTTCTCTGTATCTCAT-AGGAAGATGAT-CAC-TTATTG-TTTTAATCACTTCT
* * ** * **
110986 TTGTATCTCATCAAGAAGAC-AGATTTGG-TCTACTTCTCTATATCTCATCAAGAAGACGAGCTT
62 TTGTATCTTATCAAGAAGACGA-ATTTGGTTC-ACTTCTTTGCATCGCATCAAGAAGACGAGCAC
* * * * *
111049 TTTATTGATTTGACCCAGTTCTTTGTATCTCATCAGGAAGATGGGGTTTGAAGTCTCATTCGTAT
125 TTTATTGATTTGACCCACTTCTCTGTATCTCATCAGAAAGATGGGGTTTAAAGTCTCATTCATAT
*
111114 TGAGCTTCGCTTCATT
190 TGAGCTTCGCCTCATT
*
111130 GATTTGGTCTACTTCTCTATATCTCATAGGAAGATGATCACTTCATTGTTTTAATTCACTTCTTT
1 GATTTGGTCTACTTCTCTGTATCTCATAGGAAGATGATCACTT-ATTGTTTTAA-TCACTTCTTT
* * * * * *
111195 GTATCTTAT-AAGGAAGACGAATTTGGTTCACTTATTTGCATCGCGTTAGGAAGATGATCACTTT
64 GTATCTTATCAA-GAAGACGAATTTGGTTCACTTCTTTGCATCGCATCAAGAAGACGAGCACTTT
* **
111259 ATTGCTTTGGTCCACTTCTCTGTATCTCATCAGAAAGATGGGGTTTAAAGTCTCATTCATATTGA
128 ATTGATTTGACCCACTTCTCTGTATCTCATCAGAAAGATGGGGTTTAAAGTCTCATTCATATTGA
111324 GCTTCGCCTCATT
193 GCTTCGCCTCATT
* * * * * *
111337 -A-TTGGTCTACTTCCCTGTATCTCATCGAAAAGATGATCGCCTTATTGTTTCAATCAACTTCTC
1 GATTTGGTCTACTTCTCTGTATCTCATAG-GAAGATGATC-ACTTATTGTTTTAATC-ACTTCTT
* * * * *
111400 TGTATCTTATCAAGAAGACGGATTTGGTCCACTTCTTTGTATCTCATCAGGAAG
63 TGTATCTTATCAAGAAGACGAATTTGGTTCACTTCTTTGCATCGCATCAAGAAG
111454 TTGGCTTCAA
Statistics
Matches: 273, Mismatches: 41, Indels: 22
0.81 0.12 0.07
Matches are distributed among these distances:
205 25 0.09
206 77 0.28
207 141 0.52
208 30 0.11
ACGTcount: A:0.23, C:0.20, G:0.17, T:0.39
Consensus pattern (205 bp):
GATTTGGTCTACTTCTCTGTATCTCATAGGAAGATGATCACTTATTGTTTTAATCACTTCTTTGT
ATCTTATCAAGAAGACGAATTTGGTTCACTTCTTTGCATCGCATCAAGAAGACGAGCACTTTATT
GATTTGACCCACTTCTCTGTATCTCATCAGAAAGATGGGGTTTAAAGTCTCATTCATATTGAGCT
TCGCCTCATT
Found at i:111285 original size:292 final size:294
Alignment explanation
Indices: 110715--111290 Score: 720
Period size: 292 Copynumber: 2.0 Consensus size: 294
110705 ACTTCATCTC
* * * * *
110715 TTGGTCTACTTCTCTGTATCTCATCAGGAAGATGATTGCTTTATTGCTTTGACTCACTTCTTTGT
1 TTGGTCTACTTCTCTATATCTCATCAAGAAGACGATT-CTTTATTGATTTGACCCACTTCTTTGT
*
110780 ATCTCATCAAAAAGATAAGGGTTTGAAGCTTCACTCGCATTAAACTTTGCTTCATTTGATTTGGT
65 ATCTCATCAAAAAGATAAGGGTTTGAAGCTTCACTCGCATTAAACTTCGCTTCATTTGATTTGGT
110845 CTACTTCTATATATCTCATTAGAAAGATGACCACTTCATTGATTTAATCCACTTCTCTATATCTA
130 CTACTTCTATATATCTCATTAGAAAGATGACCACTTCATTGATTTAATCCACTTCTCTATATCTA
* * * * *
110910 ATCAGGAAGACAGATTTGGTCTACTTCTCTGTATCTCATCAGGAAGATGTCCTCTTTATCGCTTT
195 ATAAGGAAGACAGATTTGGTCTACTTATCTGCATCGCATCAGGAAGATGTCCACTTTATCGCTTT
*
110975 GACTCACTTCTTTGTATCTCATCAAGAAGACAGAT
260 GACTCACTTCTCTGTATCTCATCAAGAAGACAGAT
*
111010 TTGGTCTACTTCTCTATATCTCATCAAGAAGACGAGCTT-TTTATTGATTTGACCCAGTTCTTTG
1 TTGGTCTACTTCTCTATATCTCATCAAGAAGACGA--TTCTTTATTGATTTGACCCACTTCTTTG
** * * * * *
111074 TATCTCATCAGGAAGAT-GGGGTTTGAAG-TCTCATTCGTATTGAGCTTCGCTTCA-TTGATTTG
64 TATCTCATCAAAAAGATAAGGGTTTGAAGCT-TCACTCGCATTAAACTTCGCTTCATTTGATTTG
* * * * * * *
111136 GTCTACTTCTCTATATCTCA-TAGGAAGATGATCACTTCATTGTTTTAATTCACTTCTTTGTATC
128 GTCTACTTCTATATATCTCATTAGAAAGATGACCACTTCATTGATTTAATCCACTTCTCTATATC
* * * * *
111200 TTATAAGGAAGAC-GAATTTGGT-TCACTTATTTGCATCGCGTTAGGAAGATGAT-CACTTTATT
193 TAATAAGGAAGACAG-ATTTGGTCT-ACTTATCTGCATCGCATCAGGAAGATG-TCCACTTTATC
*
111262 GCTTTG-GTCCACTTCTCTGTATCTCATCA
255 GCTTTGACT-CACTTCTCTGTATCTCATCA
111291 GAAAGATGGG
Statistics
Matches: 241, Mismatches: 33, Indels: 17
0.83 0.11 0.06
Matches are distributed among these distances:
291 3 0.01
292 109 0.45
293 29 0.12
294 29 0.12
295 69 0.29
297 2 0.01
ACGTcount: A:0.24, C:0.20, G:0.16, T:0.40
Consensus pattern (294 bp):
TTGGTCTACTTCTCTATATCTCATCAAGAAGACGATTCTTTATTGATTTGACCCACTTCTTTGTA
TCTCATCAAAAAGATAAGGGTTTGAAGCTTCACTCGCATTAAACTTCGCTTCATTTGATTTGGTC
TACTTCTATATATCTCATTAGAAAGATGACCACTTCATTGATTTAATCCACTTCTCTATATCTAA
TAAGGAAGACAGATTTGGTCTACTTATCTGCATCGCATCAGGAAGATGTCCACTTTATCGCTTTG
ACTCACTTCTCTGTATCTCATCAAGAAGACAGAT
Found at i:111521 original size:45 final size:44
Alignment explanation
Indices: 111457--111763 Score: 268
Period size: 45 Copynumber: 7.0 Consensus size: 44
111447 CAGGAAGTTG
*
111457 GCTTCAATCTGCCCCTCTTGACTTATGGGGTAAAAGATTGGAATT
1 GCTTCAATCTACCCCTCTTGACTTA-GGGGTAAAAGATTGGAATT
** *
111502 GCTTCAATCTACCCCTCTTGA-TTAGTTGTAACAGATTGGAA-T
1 GCTTCAATCTACCCCTCTTGACTTAGGGGTAAAAGATTGGAATT
* ** * * *
111544 -CTTCAATCTGCCCCTCTTGA-TTAGGAATAAAACATTGAAATG
1 GCTTCAATCTACCCCTCTTGACTTAGGGGTAAAAGATTGGAATT
* * *
111586 GTTTCAATCTACTCCTCTTGACTTAAGGGTAAAAGATTGG-ATGAT
1 GCTTCAATCTACCCCTCTTGACTTAGGGGTAAAAGATTGGAAT--T
* * *
111631 GGTTCAATCTACCCCTCTTAACTTAGGGGTAAAAGATTGGAAAGTG
1 GCTTCAATCTACCCCTCTTGACTTAGGGGTAAAAGATTGG-AA-TT
* ** * **
111677 GCTTCAATATGTCCCTCTTGACTTAAGGGTAAAAGATTGGAAAG
1 GCTTCAATCTACCCCTCTTGACTTAGGGGTAAAAGATTGGAATT
* ** *
111721 GTCTTCAATTTGTCCCTCTGGAC-TAGGGGTAACAA-ATTGGAAT
1 G-CTTCAATCTACCCCTCTTGACTTAGGGGTAA-AAGATTGGAAT
111764 GACTGCAGTT
Statistics
Matches: 215, Mismatches: 37, Indels: 21
0.79 0.14 0.08
Matches are distributed among these distances:
41 33 0.15
42 1 0.00
43 33 0.15
44 33 0.15
45 79 0.37
46 34 0.16
47 1 0.00
48 1 0.00
ACGTcount: A:0.29, C:0.19, G:0.21, T:0.32
Consensus pattern (44 bp):
GCTTCAATCTACCCCTCTTGACTTAGGGGTAAAAGATTGGAATT
Found at i:111699 original size:91 final size:86
Alignment explanation
Indices: 111458--111762 Score: 309
Period size: 91 Copynumber: 3.5 Consensus size: 86
111448 AGGAAGTTGG
*
111458 CTTCAATCTGCCCCTCTTGACTTATGGGGTAAAAGATTGG-AATTGCTTCAATCTACCCCTCTTG
1 CTTCAATCTGCCCCTCTTGACTTA-GGGGTAAAAGATTGGAAATGGCTTCAATCTA-CCCTCTTG
* *
111522 A-TT-AGTTGTAACAGATTGGAAT
64 ACTTAAG-GGTAAAAGATTGGAAT
** * *
111544 CTTCAATCTGCCCCTCTTGA-TTAGGAATAAAACATT-GAAATGGTTTCAATCTACTCCTCTTGA
1 CTTCAATCTGCCCCTCTTGACTTAGGGGTAAAAGATTGGAAATGGCTTCAATCTAC-CCTCTTGA
111607 CTTAAGGGTAAAAGATTGGATGAT
65 CTTAAGGGTAAAAGATTGGA--AT
* * * * *
111631 GGTTCAATCTACCCCTCTTAACTTAGGGGTAAAAGATTGGAAAGTGGCTTCAATATGTCCCTCTT
1 -CTTCAATCTGCCCCTCTTGACTTAGGGGTAAAAGATTGGAAA-TGGCTTCAATCT-ACCCTCTT
111696 GACTTAAGGGTAAAAGATTGGAAAGGT
63 GACTTAAGGGTAAAAGATTGG-AA--T
* * *
111723 CTTCAATTTGTCCCTCTGGAC-TAGGGGTAACAA-ATTGGAA
1 CTTCAATCTGCCCCTCTTGACTTAGGGGTAA-AAGATTGGAA
111763 TGACTGCAGT
Statistics
Matches: 182, Mismatches: 22, Indels: 26
0.79 0.10 0.11
Matches are distributed among these distances:
83 2 0.01
84 31 0.17
85 17 0.09
86 22 0.12
87 2 0.01
88 17 0.09
89 13 0.07
90 21 0.12
91 54 0.30
92 3 0.02
ACGTcount: A:0.29, C:0.19, G:0.20, T:0.32
Consensus pattern (86 bp):
CTTCAATCTGCCCCTCTTGACTTAGGGGTAAAAGATTGGAAATGGCTTCAATCTACCCTCTTGAC
TTAAGGGTAAAAGATTGGAAT
Found at i:112067 original size:49 final size:49
Alignment explanation
Indices: 112022--112148 Score: 139
Period size: 50 Copynumber: 2.6 Consensus size: 49
112012 GTCGTTGCGA
** *
112022 CCTCAACCTTTCCTTTCATATCTTCATGGTACTGGATTTACCGTTGTGG
1 CCTCAACCTTTCCCATCATATCTTCATGGTACCGGATTTACCGTTGTGG
* * * * *
112071 CATCAATCC-TTCCCATCACATCTTCTAAGGTACCGGGTTTGCCGTTGTGG
1 CCTCAA-CCTTTCCCATCATATCTTC-ATGGTACCGGATTTACCGTTGTGG
* *
112121 CCTCAACCTTTCCCCTCATATGTTCATG
1 CCTCAACCTTTCCCATCATATCTTCATG
112149 TTTCCTTGGT
Statistics
Matches: 62, Mismatches: 13, Indels: 6
0.77 0.16 0.07
Matches are distributed among these distances:
49 22 0.35
50 40 0.65
ACGTcount: A:0.17, C:0.31, G:0.16, T:0.36
Consensus pattern (49 bp):
CCTCAACCTTTCCCATCATATCTTCATGGTACCGGATTTACCGTTGTGG
Found at i:112134 original size:50 final size:50
Alignment explanation
Indices: 111994--112134 Score: 151
Period size: 49 Copynumber: 2.8 Consensus size: 50
111984 CCCGTCATGT
* * * * ** *
111994 TTCTAAGGTATCGGGTTTGTCGTTGCGACCTCAACCTTTCCTTTCATATC
1 TTCTAAGGTACCGGGTTTGCCGTTGTGGCCTCAACCTTTCCCATCACATC
* * * * *
112044 TTC-ATGGTACTGGATTTACCGTTGTGGCATCAATCC-TTCCCATCACATC
1 TTCTAAGGTACCGGGTTTGCCGTTGTGGCCTCAA-CCTTTCCCATCACATC
112093 TTCTAAGGTACCGGGTTTGCCGTTGTGGCCTCAACCTTTCCC
1 TTCTAAGGTACCGGGTTTGCCGTTGTGGCCTCAACCTTTCCC
112135 CTCATATGTT
Statistics
Matches: 71, Mismatches: 17, Indels: 6
0.76 0.18 0.06
Matches are distributed among these distances:
49 36 0.51
50 35 0.49
ACGTcount: A:0.16, C:0.28, G:0.19, T:0.36
Consensus pattern (50 bp):
TTCTAAGGTACCGGGTTTGCCGTTGTGGCCTCAACCTTTCCCATCACATC
Found at i:112960 original size:22 final size:22
Alignment explanation
Indices: 112929--112985 Score: 64
Period size: 22 Copynumber: 2.7 Consensus size: 22
112919 TCTTGACCTC
*
112929 TCCTTTT-TTTCTTTTCTT-CT
1 TCCTTTTCTTTTTTTTCTTGCT
* * *
112949 TCTTTTTCTTTTTTTTTTTGTT
1 TCCTTTTCTTTTTTTTCTTGCT
112971 TCCTTTTCTTTTTTT
1 TCCTTTTCTTTTTTT
112986 AGGTAAAATG
Statistics
Matches: 30, Mismatches: 5, Indels: 2
0.81 0.14 0.05
Matches are distributed among these distances:
20 6 0.20
21 9 0.30
22 15 0.50
ACGTcount: A:0.00, C:0.18, G:0.02, T:0.81
Consensus pattern (22 bp):
TCCTTTTCTTTTTTTTCTTGCT
Found at i:112983 original size:6 final size:6
Alignment explanation
Indices: 112934--112983 Score: 52
Period size: 6 Copynumber: 8.8 Consensus size: 6
112924 ACCTCTCCTT
* * *
112934 TTTTTC -TTTTC TTCTTC TTTTTC TTTTT- TTTTT- TGTTTC CTTTTC
1 TTTTTC TTTTTC TTTTTC TTTTTC TTTTTC TTTTTC TTTTTC TTTTTC
112979 TTTTT
1 TTTTT
112984 TTAGGTAAAA
Statistics
Matches: 36, Mismatches: 6, Indels: 4
0.78 0.13 0.09
Matches are distributed among these distances:
5 14 0.39
6 22 0.61
ACGTcount: A:0.00, C:0.16, G:0.02, T:0.82
Consensus pattern (6 bp):
TTTTTC
Found at i:113851 original size:5 final size:5
Alignment explanation
Indices: 113841--113880 Score: 55
Period size: 5 Copynumber: 8.0 Consensus size: 5
113831 TGACTTTTAC
*
113841 TTCTT TTCTT TACTT TTCTTT TTCTT TT-TT TTCTT TTCTT
1 TTCTT TTCTT TTCTT TTC-TT TTCTT TTCTT TTCTT TTCTT
113881 GGGTTTTAAG
Statistics
Matches: 31, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
4 4 0.13
5 22 0.71
6 5 0.16
ACGTcount: A:0.03, C:0.17, G:0.00, T:0.80
Consensus pattern (5 bp):
TTCTT
Found at i:113858 original size:10 final size:10
Alignment explanation
Indices: 113841--113880 Score: 55
Period size: 9 Copynumber: 4.0 Consensus size: 10
113831 TGACTTTTAC
113841 TTCTTTTCTT
1 TTCTTTTCTT
*
113851 TACTTTTCTTT
1 TTCTTTTC-TT
113862 TTCTTTT-TT
1 TTCTTTTCTT
113871 TTCTTTTCTT
1 TTCTTTTCTT
113881 GGGTTTTAAG
Statistics
Matches: 26, Mismatches: 2, Indels: 4
0.81 0.06 0.12
Matches are distributed among these distances:
9 9 0.35
10 9 0.35
11 8 0.31
ACGTcount: A:0.03, C:0.17, G:0.00, T:0.80
Consensus pattern (10 bp):
TTCTTTTCTT
Found at i:113954 original size:26 final size:25
Alignment explanation
Indices: 113925--113979 Score: 76
Period size: 24 Copynumber: 2.2 Consensus size: 25
113915 ATCTTGACCC
*
113925 TTTTCTTTTTCTTTCTTTTTTCT-TTT
1 TTTTC-TTTT-TTTCTTTTTCCTCTTT
113951 TTTTCTTTTTTTCTTTTTCCTCTTT
1 TTTTCTTTTTTTCTTTTTCCTCTTT
113976 TTTT
1 TTTT
113980 GACCTCTTTT
Statistics
Matches: 27, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
24 11 0.41
25 11 0.41
26 5 0.19
ACGTcount: A:0.00, C:0.16, G:0.00, T:0.84
Consensus pattern (25 bp):
TTTTCTTTTTTTCTTTTTCCTCTTT
Found at i:113968 original size:16 final size:17
Alignment explanation
Indices: 113925--113979 Score: 76
Period size: 17 Copynumber: 3.2 Consensus size: 17
113915 ATCTTGACCC
113925 TTTTCTTTTTCTT-TCTT
1 TTTTCTTTTTCTTCT-TT
*
113942 TTTTCTTTTTTTTCTTT
1 TTTTCTTTTTCTTCTTT
*
113959 TTTTCTTTTTCCTCTTT
1 TTTTCTTTTTCTTCTTT
113976 TTTT
1 TTTT
113980 GACCTCTTTT
Statistics
Matches: 34, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
17 33 0.97
18 1 0.03
ACGTcount: A:0.00, C:0.16, G:0.00, T:0.84
Consensus pattern (17 bp):
TTTTCTTTTTCTTCTTT
Found at i:118136 original size:29 final size:29
Alignment explanation
Indices: 118104--118168 Score: 80
Period size: 29 Copynumber: 2.3 Consensus size: 29
118094 ATAATTTTTA
* *
118104 GAAAGTTT-AGGGTTAGAATATGGTTTTGG
1 GAAAGTTTAAGGG-TACAATATGATTTTGG
*
118133 GAAAGTTTAAGGGTACAATGTGATTTTGG
1 GAAAGTTTAAGGGTACAATATGATTTTGG
118162 G-AAGTTT
1 GAAAGTTT
118169 GGTGGTCAAA
Statistics
Matches: 32, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
28 6 0.19
29 22 0.69
30 4 0.12
ACGTcount: A:0.29, C:0.02, G:0.32, T:0.37
Consensus pattern (29 bp):
GAAAGTTTAAGGGTACAATATGATTTTGG
Found at i:118212 original size:30 final size:30
Alignment explanation
Indices: 118099--118283 Score: 141
Period size: 30 Copynumber: 6.3 Consensus size: 30
118089 AAAATATAAT
* * *
118099 TTTTA-GAAAGTTTA-GGGTTAGAATATGG
1 TTTTAGGAAAGTTTAGGGGTTAAAATGTGA
* * *
118127 TTTTGGGAAAGTTTAAGGG-TACAATGTGA
1 TTTTAGGAAAGTTTAGGGGTTAAAATGTGA
* *
118156 TTTT-GGGAAGTTT-GGTGGTCAAAATGTGA
1 TTTTAGGAAAGTTTAGG-GGTTAAAATGTGA
*
118185 TTTTAGGAAAGATTAGGGGTTAAAATGTGA
1 TTTTAGGAAAGTTTAGGGGTTAAAATGTGA
* * * * *
118215 TTTTTGAAAAGTTAAAGGGTTAAAATGTAA
1 TTTTAGGAAAGTTTAGGGGTTAAAATGTGA
* * *
118245 TTTTTTAAG-AAGTTTAGGTGTTAAAATGTAA
1 --TTTTAGGAAAGTTTAGGGGTTAAAATGTGA
118276 TTTT-GGAA
1 TTTTAGGAA
118284 GAATTTGGGG
Statistics
Matches: 124, Mismatches: 24, Indels: 17
0.75 0.15 0.10
Matches are distributed among these distances:
27 1 0.01
28 15 0.12
29 37 0.30
30 46 0.37
31 21 0.17
32 4 0.03
ACGTcount: A:0.34, C:0.01, G:0.27, T:0.38
Consensus pattern (30 bp):
TTTTAGGAAAGTTTAGGGGTTAAAATGTGA
Found at i:118258 original size:31 final size:29
Alignment explanation
Indices: 118056--118279 Score: 114
Period size: 30 Copynumber: 7.6 Consensus size: 29
118046 AAGAATTTGA
* *
118056 GGTTAAAATGTAA-TTTTGTAAAAATTCAG
1 GGTTAAAATGTAATTTTTG-AAAAGTTAAG
* * * *
118085 GATCAAAATATAATTTTT-AGAAAGTTTAG
1 GGTTAAAATGTAATTTTTGA-AAAGTTAAG
* * ** * *
118114 GGTTAGAATATGGTTTTGGGAAAGTTTAAG
1 GGTTAAAATGTAATTTTTGAAAAG-TTAAG
* * ** **
118144 GG-TACAATGTGA-TTTTGGGAAGTTTGG
1 GGTTAAAATGTAATTTTTGAAAAGTTAAG
* * * * *
118171 TGGTCAAAATGTGATTTTAGGAAAGATTAGG
1 -GGTTAAAATGTAATTTTTGAAAAG-TTAAG
*
118202 GGTTAAAATGTGATTTTTGAAAAGTTAAAG
1 GGTTAAAATGTAATTTTTGAAAAGTT-AAG
* *
118232 GGTTAAAATGTAATTTTTTAAGAAGTTTAG
1 GGTTAAAATGTAATTTTTGAA-AAGTTAAG
118262 GTGTTAAAATGTAATTTT
1 G-GTTAAAATGTAATTTT
118280 GGAAGAATTT
Statistics
Matches: 152, Mismatches: 32, Indels: 20
0.75 0.16 0.10
Matches are distributed among these distances:
27 3 0.02
28 11 0.07
29 50 0.33
30 63 0.41
31 25 0.16
ACGTcount: A:0.36, C:0.02, G:0.24, T:0.38
Consensus pattern (29 bp):
GGTTAAAATGTAATTTTTGAAAAGTTAAG
Found at i:129749 original size:21 final size:21
Alignment explanation
Indices: 129721--129767 Score: 87
Period size: 21 Copynumber: 2.3 Consensus size: 21
129711 ATTTTTTTTA
129721 ATTT-TGAGTTAGTTTAATTG
1 ATTTATGAGTTAGTTTAATTG
129741 ATTTATGAGTTAGTTTAATTG
1 ATTTATGAGTTAGTTTAATTG
129762 ATTTAT
1 ATTTAT
129768 TTGGTTTTTC
Statistics
Matches: 26, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
20 4 0.15
21 22 0.85
ACGTcount: A:0.28, C:0.00, G:0.17, T:0.55
Consensus pattern (21 bp):
ATTTATGAGTTAGTTTAATTG
Found at i:130054 original size:20 final size:21
Alignment explanation
Indices: 129999--130054 Score: 62
Period size: 20 Copynumber: 2.8 Consensus size: 21
129989 ATTATATATT
*
129999 GAAACATATAAATA-CTAGTA
1 GAAACATATAAATATTTAGTA
* *
130019 GAAAGATATTAATATTTA-TA
1 GAAACATATAAATATTTAGTA
*
130039 GAAATATATAAATATT
1 GAAACATATAAATATT
130055 AATATATAAA
Statistics
Matches: 30, Mismatches: 5, Indels: 2
0.81 0.14 0.05
Matches are distributed among these distances:
20 28 0.93
21 2 0.07
ACGTcount: A:0.54, C:0.04, G:0.09, T:0.34
Consensus pattern (21 bp):
GAAACATATAAATATTTAGTA
Found at i:130067 original size:16 final size:16
Alignment explanation
Indices: 130042--130075 Score: 59
Period size: 16 Copynumber: 2.1 Consensus size: 16
130032 ATTTATAGAA
*
130042 ATATATAAATATTAAT
1 ATATAAAAATATTAAT
130058 ATATAAAAATATTAAT
1 ATATAAAAATATTAAT
130074 AT
1 AT
130076 TCTTTCTACT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (16 bp):
ATATAAAAATATTAAT
Found at i:131584 original size:18 final size:19
Alignment explanation
Indices: 131545--131585 Score: 57
Period size: 18 Copynumber: 2.2 Consensus size: 19
131535 ATTATTTAGA
* *
131545 TATTGTATAATTTTTATTT
1 TATTGTATAATTTTGATAT
131564 TATTGT-TAATTTTGATAT
1 TATTGTATAATTTTGATAT
131582 TATT
1 TATT
131586 TTAGAGATAT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
18 14 0.70
19 6 0.30
ACGTcount: A:0.27, C:0.00, G:0.07, T:0.66
Consensus pattern (19 bp):
TATTGTATAATTTTGATAT
Found at i:132251 original size:25 final size:25
Alignment explanation
Indices: 132217--132269 Score: 106
Period size: 25 Copynumber: 2.1 Consensus size: 25
132207 TATTATAACT
132217 GATGAGTCTCAAATTCGATCGATGA
1 GATGAGTCTCAAATTCGATCGATGA
132242 GATGAGTCTCAAATTCGATCGATGA
1 GATGAGTCTCAAATTCGATCGATGA
132267 GAT
1 GAT
132270 TGATATCAAT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 28 1.00
ACGTcount: A:0.32, C:0.15, G:0.25, T:0.28
Consensus pattern (25 bp):
GATGAGTCTCAAATTCGATCGATGA
Found at i:132278 original size:25 final size:25
Alignment explanation
Indices: 132217--132278 Score: 90
Period size: 25 Copynumber: 2.5 Consensus size: 25
132207 TATTATAACT
*
132217 GATGAGTCTCAAATTCGATCGATGA
1 GATGAGTATCAAATTCGATCGATGA
*
132242 GATGAGTCTCAAATTCGATCGATGA
1 GATGAGTATCAAATTCGATCGATGA
132267 GATTGA-TATCAA
1 GA-TGAGTATCAA
132279 TTGGGGTCAA
Statistics
Matches: 35, Mismatches: 1, Indels: 2
0.92 0.03 0.05
Matches are distributed among these distances:
25 32 0.91
26 3 0.09
ACGTcount: A:0.34, C:0.15, G:0.23, T:0.29
Consensus pattern (25 bp):
GATGAGTATCAAATTCGATCGATGA
Found at i:135020 original size:21 final size:20
Alignment explanation
Indices: 134994--135044 Score: 59
Period size: 21 Copynumber: 2.5 Consensus size: 20
134984 GGAGTTTTTG
134994 GTATCGATAG-ATGCATGACTT
1 GTATCGATAGAAT-CAT-ACTT
*
135015 GTATCGGTAGAAATCATACTT
1 GTATCGATAG-AATCATACTT
135036 GTATCGATA
1 GTATCGATA
135045 AAGCTAGCAC
Statistics
Matches: 26, Mismatches: 2, Indels: 4
0.81 0.06 0.12
Matches are distributed among these distances:
21 21 0.81
22 3 0.12
23 2 0.08
ACGTcount: A:0.31, C:0.14, G:0.22, T:0.33
Consensus pattern (20 bp):
GTATCGATAGAATCATACTT
Found at i:140104 original size:2 final size:2
Alignment explanation
Indices: 140097--140136 Score: 80
Period size: 2 Copynumber: 20.0 Consensus size: 2
140087 ATGAAATGTT
140097 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
140137 ATTGATGATA
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 38 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:140843 original size:29 final size:28
Alignment explanation
Indices: 140810--140878 Score: 66
Period size: 30 Copynumber: 2.4 Consensus size: 28
140800 ATGCAATTAA
*
140810 TTAATTTTTTAAAAATTAAAAATATTTTT
1 TTAATTTTTT-AAAATTAAAAATAATTTT
* * *
140839 TTAATAATTTTTATATTTTAAAATAATTTT
1 TTAAT--TTTTTAAAATTAAAAATAATTTT
*
140869 TAAATTTTTT
1 TTAATTTTTT
140879 TAGAATTTAA
Statistics
Matches: 33, Mismatches: 5, Indels: 5
0.77 0.12 0.12
Matches are distributed among these distances:
28 5 0.15
29 5 0.15
30 18 0.55
31 5 0.15
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (28 bp):
TTAATTTTTTAAAATTAAAAATAATTTT
Found at i:140857 original size:19 final size:19
Alignment explanation
Indices: 140835--140878 Score: 61
Period size: 19 Copynumber: 2.3 Consensus size: 19
140825 TTAAAAATAT
*
140835 TTTTTTAATAATTTTTATA
1 TTTTTTAATAATTTTTAAA
**
140854 TTTTAAAATAATTTTTAAA
1 TTTTTTAATAATTTTTAAA
140873 TTTTTT
1 TTTTTT
140879 TAGAATTTAA
Statistics
Matches: 20, Mismatches: 5, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (19 bp):
TTTTTTAATAATTTTTAAA
Found at i:140879 original size:29 final size:30
Alignment explanation
Indices: 140823--140890 Score: 75
Period size: 30 Copynumber: 2.3 Consensus size: 30
140813 ATTTTTTAAA
* * * *
140823 AATTAAAAATATTTTTTTAATAATTTTTAT
1 AATTTAAAATAATTTTTAAATAATTTTTAG
* *
140853 ATTTTAAAATAATTTTTAAAT-TTTTTTAG
1 AATTTAAAATAATTTTTAAATAATTTTTAG
140882 AATTTAAAA
1 AATTTAAAA
140891 CTTTTAAAAA
Statistics
Matches: 31, Mismatches: 7, Indels: 1
0.79 0.18 0.03
Matches are distributed among these distances:
29 14 0.45
30 17 0.55
ACGTcount: A:0.44, C:0.00, G:0.01, T:0.54
Consensus pattern (30 bp):
AATTTAAAATAATTTTTAAATAATTTTTAG
Found at i:141286 original size:48 final size:48
Alignment explanation
Indices: 141233--141914 Score: 569
Period size: 48 Copynumber: 13.4 Consensus size: 48
141223 TACGAGTCCC
* * *
141233 TCCTTGGTTTGAACTCCCAATGAAAAGCTGTTGTGGATTTGTATCCAT
1 TCCTTGGCTTGAACTCCCAGTGAAAAACTGTTGTGGATTTGTATCCAT
* * ** *
141281 CCCTTGGATTGAACTCCCAGTGAAAAACTGTTGCAGATTTGCATCCAT
1 TCCTTGGCTTGAACTCCCAGTGAAAAACTGTTGTGGATTTGTATCCAT
* * *
141329 TCCTTGGCTTGAACTTCCGGTGAAGAACTGTGGTGGATGTTGTGGATTTGTATCCAT
1 TCCTTGGCTTGAACTCCCAGTGAAAAAC---------TGTTGTGGATTTGTATCCAT
* * * *
141386 CCCTTGGATTGAACTCCCAATGAAGAACTGCGGTGGATGTTGTGGATTTGTATCCAT
1 TCCTTGGCTTGAACTCCCAGTGAA-AA--AC------TGTTGTGGATTTGTATCCAT
* * * * * *
141443 CCCTTGGATTGAACTCCTAGTGAAAAGCTGTGGTGGATTTGTATCCGT
1 TCCTTGGCTTGAACTCCCAGTGAAAAACTGTTGTGGATTTGTATCCAT
* * *
141491 TCCTTGGCTTGAACTCCCAGTGAAGAGCTGTGGTGGATGTTGTGGATTTGTATCCAA
1 TCCTTGGCTTGAACTCCCAGTGAAAAAC---------TGTTGTGGATTTGTATCCAT
*
141548 CCCTTGGCTTGAACTCCCAGTGAAAAACTGTTGTGGATTTGTATCCAT
1 TCCTTGGCTTGAACTCCCAGTGAAAAACTGTTGTGGATTTGTATCCAT
* * *
141596 TCCTTGGGTTGAACTCCCAGTGAAAAACTGTTGTGGATTTGCACCCAT
1 TCCTTGGCTTGAACTCCCAGTGAAAAACTGTTGTGGATTTGTATCCAT
* *
141644 TCCTTGGGTTGAACTCCCAGTGAAGAACTGTGGTGGATGTGGATTTGTATCCAT
1 TCCTTGGCTTGAACTCCCAGTGAAAAAC--T-GT---TGTGGATTTGTATCCAT
* *
141698 CCCTTGGCTTGAACTCCCCGTGAAAAACTGTTGTGGATTTGTAT---T
1 TCCTTGGCTTGAACTCCCAGTGAAAAACTGTTGTGGATTTGTATCCAT
* * *
141743 TACTTGCCTTGAACTCCCAGTGAAAAACTGTTGTGGATTTGCATCCAT
1 TCCTTGGCTTGAACTCCCAGTGAAAAACTGTTGTGGATTTGTATCCAT
* *
141791 TCCTCGGCTTGAACTCCCAGTGAAGAACTGTGGTGGGTGTTGTGGATTTGTATCCAT
1 TCCTTGGCTTGAACTCCCAGTGAAAAAC---------TGTTGTGGATTTGTATCCAT
* * * * * * *
141848 CCCTCGGCTTGAACTCCCAGTGAAAAACTGTTTTGAATTTGTGTTCGT
1 TCCTTGGCTTGAACTCCCAGTGAAAAACTGTTGTGGATTTGTATCCAT
141896 TCCTTGGCTTGAACTCCCA
1 TCCTTGGCTTGAACTCCCA
141915 AGGAAGAACT
Statistics
Matches: 528, Mismatches: 67, Indels: 78
0.78 0.10 0.12
Matches are distributed among these distances:
45 40 0.08
48 266 0.50
50 1 0.00
51 4 0.01
52 1 0.00
54 41 0.08
56 2 0.00
57 171 0.32
58 1 0.00
60 1 0.00
ACGTcount: A:0.21, C:0.21, G:0.24, T:0.34
Consensus pattern (48 bp):
TCCTTGGCTTGAACTCCCAGTGAAAAACTGTTGTGGATTTGTATCCAT
Found at i:141479 original size:105 final size:104
Alignment explanation
Indices: 141366--141931 Score: 596
Period size: 105 Copynumber: 5.5 Consensus size: 104
141356 CTGTGGTGGA
* * *
141366 TGTTGTGGATTTGTATCCATCCCTTGGATTGAACTCCCAATGAAGAACTGCGGTGGATGTTGTGG
1 TGTTGTGGATTTGTATCCATTCCTTGGCTTGAACTCCCAGTGAAGAACTGCGGTGG-TGTTGTGG
* * *
141431 ATTTGTATCCATCCCTTGGATTGAACTCCTAGTGAAAAGC
65 ATTTGTATCCATCCCTTGGCTTGAACTCCCAGTGAAAAAC
* * * *
141471 TGTGGTGGATTTGTATCCGTTCCTTGGCTTGAACTCCCAGTGAAGAGCTGTGGTGGATGTTGTGG
1 TGTTGTGGATTTGTATCCATTCCTTGGCTTGAACTCCCAGTGAAGAACTGCGGTGG-TGTTGTGG
*
141536 ATTTGTATCCAACCCTTGGCTTGAACTCCCAGTGAAAAAC
65 ATTTGTATCCATCCCTTGGCTTGAACTCCCAGTGAAAAAC
* *
141576 TGTTGTGGATTTGTATCCATTCCTTGGGTTGAACTCCCAGTGAA-AA--AC-----TGTTGTGGA
1 TGTTGTGGATTTGTATCCATTCCTTGGCTTGAACTCCCAGTGAAGAACTGCGGTGGTGTTGTGGA
* * * * *
141633 TTTGCACCCATTCCTTGGGTTGAACTCCCAGTGAAGAAC
66 TTTGTATCCATCCCTTGGCTTGAACTCCCAGTGAAAAAC
* * *
141672 TGTGGTGGATGTGGATTTGTATCCATCCCTTGGCTTGAACTCCCCGTGAA-AA--AC-----TGT
1 --T-GT---TGTGGATTTGTATCCATTCCTTGGCTTGAACTCCCAGTGAAGAACTGCGGTGGTGT
** *
141729 TGTGGATTTGTAT---TTACTTGCCTTGAACTCCCAGTGAAAAAC
60 TGTGGATTTGTATCCATCCCTTGGCTTGAACTCCCAGTGAAAAAC
* * *
141771 TGTTGTGGATTTGCATCCATTCCTCGGCTTGAACTCCCAGTGAAGAACTGTGGTGGGTGTTGTGG
1 TGTTGTGGATTTGTATCCATTCCTTGGCTTGAACTCCCAGTGAAGAACTGCGGT-GGTGTTGTGG
*
141836 ATTTGTATCCATCCCTCGGCTTGAACTCCCAGTGAAAAAC
65 ATTTGTATCCATCCCTTGGCTTGAACTCCCAGTGAAAAAC
* * * * *
141876 TGTTTTGAATTTGTGTTCGTTCCTTGGCTTGAACTCCCAAG-GAAGAACTGCTGGTG
1 TGTTGTGGATTTGTATCCATTCCTTGGCTTGAACTCCC-AGTGAAGAACTGC-GGTG
141932 ATTTGAATTC
Statistics
Matches: 391, Mismatches: 50, Indels: 40
0.81 0.10 0.08
Matches are distributed among these distances:
93 37 0.09
94 2 0.01
96 44 0.11
97 1 0.00
98 1 0.00
99 27 0.07
102 72 0.18
104 1 0.00
105 201 0.51
106 5 0.01
ACGTcount: A:0.21, C:0.20, G:0.25, T:0.33
Consensus pattern (104 bp):
TGTTGTGGATTTGTATCCATTCCTTGGCTTGAACTCCCAGTGAAGAACTGCGGTGGTGTTGTGGA
TTTGTATCCATCCCTTGGCTTGAACTCCCAGTGAAAAAC
Found at i:141835 original size:150 final size:151
Alignment explanation
Indices: 141423--141914 Score: 668
Period size: 150 Copynumber: 3.2 Consensus size: 151
141413 CTGCGGTGGA
** ** * * * *
141423 TGTTGTGGATTTGTATCCATCCCTTGGATTGAACTCCTAGTGAAAAGCTGTGGTGGATTTGTATC
1 TGTTGTGGATTTGTAT-C-TTACTTGCCTTGAACTCCCAGTGAAAAACTGTTGTGGATTTGCATC
* * * *
141488 CGTTCCTTGGCTTGAACTCCCAGTGAAGAGCTGTGGTGGATGTTGTGGATTTGTATCCAACCCTT
64 CATTCCTTGGCTTGAACTCCCAGTGAAGAACTGTGGTGGGTGTTGTGGATTTGTATCCATCCCTT
141553 GGCTTGAACTCCCAGTGAAAAAC
129 GGCTTGAACTCCCAGTGAAAAAC
* ** *
141576 TGTTGTGGATTTGTATCCATTCCTTGGGTTGAACTCCCAGTGAAAAACTGTTGTGGATTTGCACC
1 TGTTGTGGATTTGTAT-C-TTACTTGCCTTGAACTCCCAGTGAAAAACTGTTGTGGATTTGCATC
* *
141641 CATTCCTTGGGTTGAACTCCCAGTGAAGAACTGTGGT--G-GATGTGGATTTGTATCCATCCCTT
64 CATTCCTTGGCTTGAACTCCCAGTGAAGAACTGTGGTGGGTGTTGTGGATTTGTATCCATCCCTT
*
141703 GGCTTGAACTCCCCGTGAAAAAC
129 GGCTTGAACTCCCAGTGAAAAAC
141726 TGTTGTGGATTTGTAT-TTACTTGCCTTGAACTCCCAGTGAAAAACTGTTGTGGATTTGCATCCA
1 TGTTGTGGATTTGTATCTTACTTGCCTTGAACTCCCAGTGAAAAACTGTTGTGGATTTGCATCCA
* *
141790 TTCCTCGGCTTGAACTCCCAGTGAAGAACTGTGGTGGGTGTTGTGGATTTGTATCCATCCCTCGG
66 TTCCTTGGCTTGAACTCCCAGTGAAGAACTGTGGTGGGTGTTGTGGATTTGTATCCATCCCTTGG
141855 CTTGAACTCCCAGTGAAAAAC
131 CTTGAACTCCCAGTGAAAAAC
* * * * *
141876 TGTTTTGAATTTGTGTTCGTTCCTTGGCTTGAACTCCCA
1 TGTTGTGGATTTGT-ATC-TTACTTGCCTTGAACTCCCA
141915 AGGAAGAACT
Statistics
Matches: 305, Mismatches: 28, Indels: 12
0.88 0.08 0.03
Matches are distributed among these distances:
147 77 0.25
149 1 0.00
150 116 0.38
151 1 0.00
153 110 0.36
ACGTcount: A:0.21, C:0.21, G:0.25, T:0.34
Consensus pattern (151 bp):
TGTTGTGGATTTGTATCTTACTTGCCTTGAACTCCCAGTGAAAAACTGTTGTGGATTTGCATCCA
TTCCTTGGCTTGAACTCCCAGTGAAGAACTGTGGTGGGTGTTGTGGATTTGTATCCATCCCTTGG
CTTGAACTCCCAGTGAAAAAC
Found at i:141878 original size:57 final size:57
Alignment explanation
Indices: 141771--141878 Score: 189
Period size: 57 Copynumber: 1.9 Consensus size: 57
141761 AGTGAAAAAC
* *
141771 TGTTGTGGATTTGCATCCATTCCTCGGCTTGAACTCCCAGTGAAGAACTGTGGTGGG
1 TGTTGTGGATTTGCATCCATCCCTCGGCTTGAACTCCCAGTGAAAAACTGTGGTGGG
*
141828 TGTTGTGGATTTGTATCCATCCCTCGGCTTGAACTCCCAGTGAAAAACTGT
1 TGTTGTGGATTTGCATCCATCCCTCGGCTTGAACTCCCAGTGAAAAACTGT
141879 TTTGAATTTG
Statistics
Matches: 48, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
57 48 1.00
ACGTcount: A:0.19, C:0.22, G:0.26, T:0.32
Consensus pattern (57 bp):
TGTTGTGGATTTGCATCCATCCCTCGGCTTGAACTCCCAGTGAAAAACTGTGGTGGG
Found at i:145886 original size:3 final size:3
Alignment explanation
Indices: 145880--145922 Score: 86
Period size: 3 Copynumber: 14.3 Consensus size: 3
145870 CATTATCACC
145880 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT A
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT A
145923 GGGTTTCATT
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 40 1.00
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (3 bp):
ATT
Found at i:146493 original size:19 final size:18
Alignment explanation
Indices: 146452--146494 Score: 50
Period size: 19 Copynumber: 2.3 Consensus size: 18
146442 AAAAATCTGT
*
146452 TTTTTTAGAAAAGTTTAA
1 TTTTTTAAAAAAGTTTAA
* *
146470 ATTTTTAAACAAAGTTTTA
1 TTTTTTAAA-AAAGTTTAA
146489 TTTTTT
1 TTTTTT
146495 TAATTATTTC
Statistics
Matches: 20, Mismatches: 4, Indels: 1
0.80 0.16 0.04
Matches are distributed among these distances:
18 7 0.35
19 13 0.65
ACGTcount: A:0.35, C:0.02, G:0.07, T:0.56
Consensus pattern (18 bp):
TTTTTTAAAAAAGTTTAA
Found at i:146570 original size:136 final size:135
Alignment explanation
Indices: 146348--146592 Score: 343
Period size: 136 Copynumber: 1.8 Consensus size: 135
146338 AAAAATTTTT
*
146348 GTTTTTTTTTTAAATAATTTCAAAATAAAAACTTTGATTTTTAAGTAAAATAGTGATTTTCGATG
1 GTTTTTTTTTTAAATAATTTCAAAATAAAAACTTTGATTTTTAAGTAAAATAGTGATTTTCGATA
*
146413 AAAAAGAGAAAGTTTAGATTTTTAAAAATAAAAATCTGTTTTTTTAGAAAAGTTTAAATTTTTAA
66 AAAAAGAGAAAGTTTAGATTTTTAAAAATAAAAATATGTTTTTTTAGAAAAGTTTAAATTTTTAA
146478 ACAAA
131 ACAAA
* * * * *
146483 GTTTTATTTTTTTAATTATTTCGAAAT-AAAAGTTTAGATTTTTAAG-AAAGTAGTGATTTTC-A
1 GTTTT-TTTTTTAAATAATTTCAAAATAAAAACTTT-GATTTTTAAGTAAAATAGTGATTTTCGA
* * *
146545 TTAAAAAAGGGGAAATTTTATATTTTTAAAAATAAAAATATGTTTTTT
64 -TAAAAAA-GAGAAAGTTTAGATTTTTAAAAATAAAAATATGTTTTTT
146593 AGTTATTTTA
Statistics
Matches: 96, Mismatches: 10, Indels: 7
0.85 0.09 0.06
Matches are distributed among these distances:
134 1 0.01
135 32 0.33
136 63 0.66
ACGTcount: A:0.42, C:0.03, G:0.11, T:0.44
Consensus pattern (135 bp):
GTTTTTTTTTTAAATAATTTCAAAATAAAAACTTTGATTTTTAAGTAAAATAGTGATTTTCGATA
AAAAAGAGAAAGTTTAGATTTTTAAAAATAAAAATATGTTTTTTTAGAAAAGTTTAAATTTTTAA
ACAAA
Found at i:146841 original size:51 final size:51
Alignment explanation
Indices: 146607--146843 Score: 143
Period size: 51 Copynumber: 4.7 Consensus size: 51
146597 ATTTTAAAGA
*
146607 AAAAGTTTAAATTTTTAAATAAAACTT-TTGATTTTTTTTAACTATTTCGAAAT
1 AAAAGTTTAAATTTTTAAAT-AAA-TTAATGA-TTTTTTTAACTATTTCGAAAT
** * * * ***
146660 AAAAGTTTGGATTTTTAAGTAAAGTAATGATTTTCATTAA--A-AAAGAAA-
1 AAAAGTTTAAATTTTTAAATAAATTAATGATTTT-TTTAACTATTTCGAAAT
* * * ** * *
146708 GAAAGTTTATATTTTTAAAAATAAA--AAT-CTATTTTTTAGTTATTT-TAAAGA
1 AAAAGTTTAAATTTTT--AAATAAATTAATGAT-TTTTTTAACTATTTCGAAA-T
* *
146759 AAAAGTTTAAAATTTTAAATAATATT-TTGATTTTTTTAACTATTTCGAAAT
1 AAAAGTTTAAATTTTTAAATAA-ATTAATGATTTTTTTAACTATTTCGAAAT
* *
146810 AAAAGTTTAGATTTTTAAGTAAATTAATGATTTT
1 AAAAGTTTAAATTTTTAAATAAATTAATGATTTT
146844 CATTAAAAAA
Statistics
Matches: 136, Mismatches: 32, Indels: 34
0.67 0.16 0.17
Matches are distributed among these distances:
47 4 0.03
48 19 0.14
49 14 0.10
50 11 0.08
51 57 0.42
52 14 0.10
53 17 0.12
ACGTcount: A:0.43, C:0.03, G:0.09, T:0.46
Consensus pattern (51 bp):
AAAAGTTTAAATTTTTAAATAAATTAATGATTTTTTTAACTATTTCGAAAT
Found at i:146849 original size:150 final size:151
Alignment explanation
Indices: 146460--147149 Score: 965
Period size: 150 Copynumber: 4.6 Consensus size: 151
146450 GTTTTTTTAG
*
146460 AAAAGTTTAAATTTTTAAACAAAGTTTT-A-TTTTTTTAATTATTTCGAAATAAAAGTTTAGATT
1 AAAAGTTTAAATTTTTAAACAAAGTTTTGATTTTTTTTAACTATTTCGAAATAAAAGTTTAGATT
** *
146523 TTTAAG-AAAGTAGTGATTTTCATTAAAAAAG-GGGAAATTTTATATTTTTAAAAATAAAAATAT
66 TTTAAGTAAAGTAGTGATTTTCATTAAAAAAGAAAGAAA-TTTATATTTTTAAAAATAAAAATCT
*
146586 GTTTTTTAGTTATTTTAAAG-A
130 GTTTTTTAGTGATTTTAAAGAA
* * *
146607 AAAAGTTTAAATTTTTAAATAAAACTTTTGATTTTTTTTAACTATTTCGAAATAAAAGTTTGGAT
1 AAAAGTTTAAATTTTTAAA-CAAAGTTTTGATTTTTTTTAACTATTTCGAAATAAAAGTTTAGAT
*
146672 TTTTAAGTAAAGTAATGATTTTCATTAAAAAAGAAAGAAAGTTTATATTTTTAAAAATAAAAATC
65 TTTTAAGTAAAGTAGTGATTTTCATTAAAAAAGAAAGAAA-TTTATATTTTTAAAAATAAAAATC
* *
146737 TATTTTTTAGTTATTTTAAAG-A
129 TGTTTTTTAGTGATTTTAAAGAA
* *
146759 AAAAGTTTAAAATTTTAAATAATA-TTTTGA-TTTTTTTAACTATTTCGAAATAAAAGTTTAGAT
1 AAAAGTTTAAATTTTTAAACAA-AGTTTTGATTTTTTTTAACTATTTCGAAATAAAAGTTTAGAT
* * * *
146822 TTTTAAGTAAATTAATGATTTTCATTAAAAAAAAAAGAAAATTTAGATTTTTAAAAAATAAAAAT
65 TTTTAAGTAAAGTAGTGATTTTCATTAAAAAAGAAAG-AAATTTATATTTTT-AAAAATAAAAAT
146887 CTGTTTTTTAGTGATTTTAAAGAAA
128 CTGTTTTTTAGTGATTTTAAAG-AA
*
146912 AAAAGTTTAAATTTTTAAACAAAGTTTTGATTTTTTTTTTTAACTATTTCAAAATAAAAGTTTAG
1 AAAAGTTTAAATTTTTAAACAAAGTTTTGA---TTTTTTTTAACTATTTCGAAATAAAAGTTTAG
**
146977 ATTTTTAAGTAAAGTAGTGATTTTCATT-AAAAA-AAAGTTTAAATTTA-A--AATAAAAATAAA
63 ATTTTTAAGTAAAGTAGTGATTTTCATTAAAAAAGAAAG---AAATTTATATTTTTAAAAATAAA
147037 AATCTGTTTTTTAGTGATTTTAAAGAA
125 AATCTGTTTTTTAGTGATTTTAAAGAA
* *
147064 AAAAGTTTAAATTTTTAAACAAAGTTTTGATTTTTTTTAACTATTTCAAAATAAAAGTTTTGATT
1 AAAAGTTTAAATTTTTAAACAAAGTTTTGATTTTTTTTAACTATTTCGAAATAAAAGTTTAGATT
*
147129 TTGAAGTAAAGTAGTGATTTT
66 TTTAAGTAAAGTAGTGATTTT
147150 GTTTTAATCA
Statistics
Matches: 498, Mismatches: 28, Indels: 32
0.89 0.05 0.06
Matches are distributed among these distances:
147 19 0.04
148 7 0.01
149 55 0.11
150 115 0.23
151 67 0.13
152 100 0.20
153 61 0.12
154 1 0.00
155 4 0.01
156 6 0.01
157 63 0.13
ACGTcount: A:0.43, C:0.03, G:0.10, T:0.44
Consensus pattern (151 bp):
AAAAGTTTAAATTTTTAAACAAAGTTTTGATTTTTTTTAACTATTTCGAAATAAAAGTTTAGATT
TTTAAGTAAAGTAGTGATTTTCATTAAAAAAGAAAGAAATTTATATTTTTAAAAATAAAAATCTG
TTTTTTAGTGATTTTAAAGAA
Found at i:148610 original size:239 final size:242
Alignment explanation
Indices: 148182--148665 Score: 715
Period size: 239 Copynumber: 2.0 Consensus size: 242
148172 TTCATAATAA
*
148182 TGATAAAAGATCGAATAAGTTGTAGATGAATTTTAATATTTCTCTTAATTCATTAGTAACTTTTA
1 TGATAAAAGATCGAATAAATTGTAGATGAATTTTAATATTTCTCTTAATTCATTAGTAA---TT-
* * * *
148247 GGTTTTTTTAGGTTTTTTTTAGGATTCTAAAATAGAATTAATTTTAAGAATTGAAGGTATTTTAT
62 -GTTTTTTTAGG-TTTTGTTAGGATTCTAAAATAGAATTAATTTTAAGAATTGAAAGCATTTTAC
* *
148312 TAGAATTATTTAAGTATCTTTTAGGATTCTCGTTAGAAATAAAAATCTCTAATTTAAGTTTTAAA
125 TAGAATTATTTAAGTATCCTTTAGGATTCTCATTAGAAATAAAAATCTCTAATTTAAGTTTTAAA
* *
148377 TTAGATAAGTTTAGTGAATACGTGATAGTCAAGTTACAAGTAAATCGGAGTAT
190 TTAGATAAGTTTAGTGAACACGTCATAGTCAAGTTACAAGTAAATCGGAGTAT
*
148430 TGATAAATGATCGAATAAATTGTAGATGAATTTTAATATTTCTCTTAATTCATTAGTAA-T-TTT
1 TGATAAAAGATCGAATAAATTGTAGATGAATTTTAATATTTCTCTTAATTCATTAGTAATTGTTT
148493 TTTTAGG-TTTGTTAGGATTCTAAAATAGAATTAATTTTAAGAATTGAAAGCATTTTACTAGAAT
66 TTTTAGGTTTTGTTAGGATTCTAAAATAGAATTAATTTTAAGAATTGAAAGCATTTTACTAGAAT
* * * * *
148557 TATTTAGGTATCCTTTAGGGTTCTTATTA-AGAGTAAAAATCTTTAATTTAAGTTTTAAATTAGA
131 TATTTAAGTATCCTTTAGGATTCTCATTAGA-AATAAAAATCTCTAATTTAAGTTTTAAATTAGA
* * *
148621 TAAGTTTGGTGAACACGTCTTAGTCAAGTTACAAGTAAATTGGAG
195 TAAGTTTAGTGAACACGTCATAGTCAAGTTACAAGTAAATCGGAG
148666 GCATTTTTTA
Statistics
Matches: 217, Mismatches: 18, Indels: 11
0.88 0.07 0.04
Matches are distributed among these distances:
238 1 0.00
239 148 0.68
241 10 0.05
244 1 0.00
248 57 0.26
ACGTcount: A:0.36, C:0.06, G:0.15, T:0.42
Consensus pattern (242 bp):
TGATAAAAGATCGAATAAATTGTAGATGAATTTTAATATTTCTCTTAATTCATTAGTAATTGTTT
TTTTAGGTTTTGTTAGGATTCTAAAATAGAATTAATTTTAAGAATTGAAAGCATTTTACTAGAAT
TATTTAAGTATCCTTTAGGATTCTCATTAGAAATAAAAATCTCTAATTTAAGTTTTAAATTAGAT
AAGTTTAGTGAACACGTCATAGTCAAGTTACAAGTAAATCGGAGTAT
Found at i:153263 original size:124 final size:124
Alignment explanation
Indices: 152947--153276 Score: 385
Period size: 125 Copynumber: 2.6 Consensus size: 124
152937 GGCTTCATCT
* * * * *
152947 TTTGGTCTACTTCTCTGTATCTCATCAGGAAA-ATGATCGTTTTATTGCTTCAACCCACTTCTCT
1 TTTGGTCTACTTCTCTGTATCTCATCA-GAAAGATGACCG-CTTATTGTTTTAATCCACTTCTCT
* * **
153011 ATATCTCATCAGGAAGATAAGGGTTTGAAGCTTCACTCGCATTGAACTTTGCTTCATTTGA
64 GTATCTCATCAGGAAGATAAGGGTTTGAAGCTTCACTCACATTGAACTTCACTTCATTTGA
* * * * * * *
153072 TTTGGTCTACTTCTTTGTATCTCATCAGGAAGATGACCGCTTCATTATTGTGATTCATTTCTCTG
1 TTTGGTCTACTTCTCTGTATCTCATCAGAAAGATGACCGCTT-ATTGTTTTAATCCACTTCTCTG
* * * *
153137 TATCCCATCAGGAAGATGAGGGTTTGAAGTTTCACTCACATTGAGCTTCACTTCA-TTGA
65 TATCTCATCAGGAAGATAAGGGTTTGAAGCTTCACTCACATTGAACTTCACTTCATTTGA
* * * *
153196 TTTGGTTTACTTCTCTGTATATCATCAGAAAGATAACCGCCTTATTGTTTTAATCCACTTCTTTG
1 TTTGGTCTACTTCTCTGTATCTCATCAGAAAGATGACCG-CTTATTGTTTTAATCCACTTCTCTG
*
153261 TATCTCATAAGGAAGA
65 TATCTCATCAGGAAGA
153277 CGAATTTAGT
Statistics
Matches: 169, Mismatches: 33, Indels: 7
0.81 0.16 0.03
Matches are distributed among these distances:
124 73 0.43
125 96 0.57
ACGTcount: A:0.24, C:0.20, G:0.16, T:0.39
Consensus pattern (124 bp):
TTTGGTCTACTTCTCTGTATCTCATCAGAAAGATGACCGCTTATTGTTTTAATCCACTTCTCTGT
ATCTCATCAGGAAGATAAGGGTTTGAAGCTTCACTCACATTGAACTTCACTTCATTTGA
Found at i:153500 original size:71 final size:71
Alignment explanation
Indices: 153389--153578 Score: 283
Period size: 71 Copynumber: 2.7 Consensus size: 71
153379 ACTCACATTA
* * * * *
153389 AGCTTCACTTTATCGATTTGTTCTACTTCTCTGTATCTCATCAGGAAGACTAATTTGATACACTT
1 AGCTTCACTTCATCGGTTTGGTCTACTTCTCTGTATCTCATCAGGAAGACGAATTCGATACACTT
153454 CTATTG
66 CTATTG
* * * *
153460 AGCTTCGCTTCATCGGTTTGGTCTACTTCTCAGTATCTCATTAGGAAGACGGATTCGATACACTT
1 AGCTTCACTTCATCGGTTTGGTCTACTTCTCTGTATCTCATCAGGAAGACGAATTCGATACACTT
*
153525 TTATTG
66 CTATTG
153531 AGCTTCACTTCATCGGTTTGGTC-ACTTCTCTGTATCTCATCAGGAAGA
1 AGCTTCACTTCATCGGTTTGGTCTACTTCTCTGTATCTCATCAGGAAGA
153579 TGGATCGCCT
Statistics
Matches: 106, Mismatches: 13, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
70 23 0.22
71 83 0.78
ACGTcount: A:0.22, C:0.22, G:0.17, T:0.39
Consensus pattern (71 bp):
AGCTTCACTTCATCGGTTTGGTCTACTTCTCTGTATCTCATCAGGAAGACGAATTCGATACACTT
CTATTG
Found at i:153898 original size:85 final size:85
Alignment explanation
Indices: 153753--153915 Score: 200
Period size: 85 Copynumber: 1.9 Consensus size: 85
153743 TCGCTTCATT
* * * * *
153753 GATTTGGTCTACTTCTCTGTATCTCATCAGGAAGATGACCGCCTCATTATTTTAATCCACTTCTC
1 GATTTGGTCTACTTCTCTATATCTCATCAAGAAGATGACCACCTCATTACTTTAACCCACTTCTC
153818 TATATCTCATCAGGAAGGCG
66 TATATCTCATCAGGAAGGCG
* * * * * * * *
153838 GATTTGGTTTACTTTTCTATATCTCATCAAGAAGATGACTACTTTATTGCTTTGACCCACTTCTT
1 GATTTGGTCTACTTCTCTATATCTCATCAAGAAGATGACCACCTCATTACTTTAACCCACTTCTC
*
153903 TGTATCTCATCAG
66 TATATCTCATCAG
153916 TAAGATGGGG
Statistics
Matches: 64, Mismatches: 14, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
85 64 1.00
ACGTcount: A:0.23, C:0.23, G:0.15, T:0.39
Consensus pattern (85 bp):
GATTTGGTCTACTTCTCTATATCTCATCAAGAAGATGACCACCTCATTACTTTAACCCACTTCTC
TATATCTCATCAGGAAGGCG
Found at i:153911 original size:208 final size:207
Alignment explanation
Indices: 153526--154459 Score: 1153
Period size: 208 Copynumber: 4.5 Consensus size: 207
153516 GATACACTTT
* * * * *
153526 TATTGAGCTTCACTTCATCGGTTTGGTC-ACTTCTCTGTATCTCATCAGGAAGATGGATCGCCTC
1 TATTGAGCTTCGCTTCATTGATTTGGTCTACTTCTCTATATCTCATCAGGAAGAT-GACCGCCTC
* * *
153590 ATTGA-TTTAATCCACTTCTCTGTATCTCATCAGGAAGATGGATTTGGT-CAATTTCTTTGTATC
65 ATT-ATTTTAATCCACTTCTCTGTATCTCATCAGGAAGACGGATTTGGTCCACTTT-TCTGTATC
* * * *
153653 TTATCAAGAAGATGACCT-CTTTATTGCTTTGACCCATTTCTTTCTATCTCATTAGGAAGATAGG
128 TCATCAAGAAGATGA-CTACTTTATTGCTTTGACCCACTT-TTTGTATCTCATCAGGAAGATAGG
*
153717 GTTTGAAGTCCCATTCG
191 GTTTGAAGTCTCATTCG
*
153734 TATT-ATGCTTCGCTTCATTGATTTGGTCTACTTCTCTGTATCTCATCAGGAAGATGACCGCCTC
1 TATTGA-GCTTCGCTTCATTGATTTGGTCTACTTCTCTATATCTCATCAGGAAGATGACCGCCTC
* * ** *
153798 ATTATTTTAATCCACTTCTCTATATCTCATCAGGAAGGCGGATTTGGTTTACTTTTCTATATCTC
65 ATTATTTTAATCCACTTCTCTGTATCTCATCAGGAAGACGGATTTGGTCCACTTTTCTGTATCTC
* *
153863 ATCAAGAAGATGACTACTTTATTGCTTTGACCCACTTCTTTGTATCTCATCAGTAAGATGGGGTT
130 ATCAAGAAGATGACTACTTTATTGCTTTGACCCACTT-TTTGTATCTCATCAGGAAGATAGGGTT
*
153928 TGAAGTTTCATTCG
194 TGAAGTCTCATTCG
* * * * *
153942 TATTGAGCTTCACTTTATTGATTTGGTTTACTTCTCTATATCTCATCAGGAAGATGACTGCTTCA
1 TATTGAGCTTCGCTTCATTGATTTGGTCTACTTCTCTATATCTCATCAGGAAGATGACCGCCTCA
*
154007 TTGA-TTTAATCCACTTCTCCGTATCTCATCAGGAAGACGGATTTGGTCCACTTCTT-TGTATCT
66 TT-ATTTTAATCCACTTCTCTGTATCTCATCAGGAAGACGGATTTGGTCCACTT-TTCTGTATCT
* * ** * *
154070 CATCAAGAAGATGACCACTTTATTACTTTGAGTCACCTTTCTGTATCTCATCAAGAAGATAGGGT
129 CATCAAGAAGATGACTACTTTATTGCTTTGACCCA-CTTTTTGTATCTCATCAGGAAGATAGGGT
*
154135 TTGAAGTCTCAATCG
193 TTGAAGTCTCATTCG
* * * *
154150 TATTGAGTTTCGCTTCATTGATTTGATCTACTTTTCTATATTTCATCAGGAAGATGACCGCCTCA
1 TATTGAGCTTCGCTTCATTGATTTGGTCTACTTCTCTATATCTCATCAGGAAGATGACCGCCTCA
* * * * * * * *
154215 TTGTTTCAATCCACTTTTCTGTATTTGATCAGAAAGACAGATTTGGTCCACTTCTCTGTATCTCA
66 TTATTTTAATCCACTTCTCTGTATCTCATCAGGAAGACGGATTTGGTCCACTTTTCTGTATCTCA
* * * * *
154280 TCAAAAAGATGACTACTTTATTGCTTTAACTCACTTTTCTGTATCTCATTAGGAAGATGGGGTTT
131 TCAAGAAGATGACTACTTTATTGCTTTGACCCACTTTT-TGTATCTCATCAGGAAGATAGGGTTT
* * *
154345 GAAGTTTTATTCA
195 GAAGTCTCATTCG
* * * * * *
154358 AATTAAACTTCGCTTCATTGATTTAGTCTACTTCTCTATATCTTATCAGAAAGATGACCGCCTCA
1 TATTGAGCTTCGCTTCATTGATTTGGTCTACTTCTCTATATCTCATCAGGAAGATGACCGCCTCA
* *
154423 TTATTTCAATCCACTTCTTTGTATCTCATCAGGAAGA
66 TTATTTTAATCCACTTCTCTGTATCTCATCAGGAAGA
154460 TTGGGTTTGA
Statistics
Matches: 626, Mismatches: 88, Indels: 24
0.85 0.12 0.03
Matches are distributed among these distances:
207 9 0.01
208 580 0.93
209 37 0.06
ACGTcount: A:0.24, C:0.20, G:0.16, T:0.40
Consensus pattern (207 bp):
TATTGAGCTTCGCTTCATTGATTTGGTCTACTTCTCTATATCTCATCAGGAAGATGACCGCCTCA
TTATTTTAATCCACTTCTCTGTATCTCATCAGGAAGACGGATTTGGTCCACTTTTCTGTATCTCA
TCAAGAAGATGACTACTTTATTGCTTTGACCCACTTTTTGTATCTCATCAGGAAGATAGGGTTTG
AAGTCTCATTCG
Found at i:154479 original size:123 final size:123
Alignment explanation
Indices: 154254--154581 Score: 392
Period size: 123 Copynumber: 2.7 Consensus size: 123
154244 CAGAAAGACA
* * * * * * * *
154254 GATTTGGTCCACTTCTCTGTATCTCATCAAAAAGATGACTACTTTATTGCTTT-AACTCACTT-T
1 GATTTAGTCTACTTCTCTATATCTCATCAGAAAGATGACCACCTCATT-ATTTCAACTCACTTCT
* **
154317 TCTGTATCTCATTAGGAAGATGGGGTTTGAAGTTTTATTCAAATTAAACTTCGCTTCATT
65 T-TGTATCTCATCAGGAAGATGGGGTTTGAAGTCCTATTCAAATTAAACTTCGCTTCATT
* *
154377 GATTTAGTCTACTTCTCTATATCTTATCAGAAAGATGACCGCCTCATTATTTCAA-TCCACTTCT
1 GATTTAGTCTACTTCTCTATATCTCATCAGAAAGATGACCACCTCATTATTTCAACT-CACTTCT
* ** * *
154441 TTGTATCTCATCAGGAAGATTGGGTTTGAAGTCCTATTCGTATTGAGCTTCGCTTCATT
65 TTGTATCTCATCAGGAAGATGGGGTTTGAAGTCCTATTCAAATTAAACTTCGCTTCATT
* * * * *
154500 GATTTGGTCTACTTCTCTGTATCTCATCAGAAAGATGACCACCTCATTGTTTTAACTCACTTCTC
1 GATTTAGTCTACTTCTCTATATCTCATCAGAAAGATGACCACCTCATTATTTCAACTCACTTCTT
*
154565 TGTATCTCATCAAGAAG
66 TGTATCTCATCAGGAAG
154582 GTGAATTTGA
Statistics
Matches: 175, Mismatches: 26, Indels: 8
0.84 0.12 0.04
Matches are distributed among these distances:
122 4 0.02
123 168 0.96
124 3 0.02
ACGTcount: A:0.25, C:0.21, G:0.15, T:0.40
Consensus pattern (123 bp):
GATTTAGTCTACTTCTCTATATCTCATCAGAAAGATGACCACCTCATTATTTCAACTCACTTCTT
TGTATCTCATCAGGAAGATGGGGTTTGAAGTCCTATTCAAATTAAACTTCGCTTCATT
Found at i:154513 original size:331 final size:331
Alignment explanation
Indices: 154109--154790 Score: 881
Period size: 331 Copynumber: 2.1 Consensus size: 331
154099 GAGTCACCTT
* *
154109 TCTGTATCTCATCAAGAAGATAGGGTTTGAAGTCTCAATCGTATTGAGTTTCGCTTCATTGATTT
1 TCTGTATCTCATCAGGAAGATAGGGTTTGAAGTCTCAATCGTATTGAGCTTCGCTTCATTGATTT
* * * * *
154174 GATCTACTTTTCTATATTTCATCAGGAAGATGACCGCCTCATTGTTTCAA-TCCACTTTTCTGTA
66 GATCTACTTCTCTATATCTCATCAGAAAGATGACCACCTCATTGTTTCAACT-CACTTCTCTGTA
* * * * * *
154238 TTTGATC-AGAAAGACAGATTTGGTCCACTTCTCTGTATCTCATCAAAAAGATGACTACTTTATT
130 TCTCATCAAGAAAGACA-ATTTGATCCACTTCTCTATATCTCATCAAAAAGATGACCACTGTATT
* * * *
154302 GCTTTAACTCACTT-TTCTGTATCTCATTAGGAAGATGGGGTTTGAAGTTTTATTCAAATTAAAC
194 GCTTTAACCCACTTCTT-TGTATCTCATCAGGAAGATGGGGTTTGAAGTCTCATTCAAATTAAAC
*
154366 TTCGCTTCATTGATTTAGTCTACTTCTCTATATCTTATC-AGAAAGATGACCGCCTCATT-ATTT
258 TTCGCTTCATTGATTTAGTCTACTTCTCTATATCTCATCAAG-AAGATGACCGCCTCATTGA-TT
154429 CAATCCACTTC
321 CAATCCACTTC
* * *
154440 TTTGTATCTCATCAGGAAGATTGGGTTTGAAGTC-CTATTCGTATTGAGCTTCGCTTCATTGATT
1 TCTGTATCTCATCAGGAAGATAGGGTTTGAAGTCTC-AATCGTATTGAGCTTCGCTTCATTGATT
* * *
154504 TGGTCTACTTCTCTGTATCTCATCAGAAAGATGACCACCTCATTGTTTTAACTCACTTCTCTGTA
65 TGATCTACTTCTCTATATCTCATCAGAAAGATGACCACCTCATTGTTTCAACTCACTTCTCTGTA
* ** ** * * **
154569 TCTCATCAAGAAGGTGAATTTGATTTACTTCTCTATATTTCATTAGGAAGATGACCACTGTATTG
130 TCTCATCAAGAAAGACAATTTGATCCACTTCTCTATATCTCATCAAAAAGATGACCACTGTATTG
* * ** * *
154634 CTTTGACCCACTTCTTTGTATCTCATCAGTAAGATGGGGTTTGAAGTCTCATTCGTATTGAGCTT
195 CTTTAACCCACTTCTTTGTATCTCATCAGGAAGATGGGGTTTGAAGTCTCATTCAAATTAAACTT
* * * *
154699 CGCTTCATTGATTTGGTCTACTTCTCTGTATCTCATCAAGAAGATGATCGCTTCATTGATTCAAT
260 CGCTTCATTGATTTAGTCTACTTCTCTATATCTCATCAAGAAGATGACCGCCTCATTGATTCAAT
154764 CCACTTC
325 CCACTTC
154771 TCTGTATCTCATCAGGAAGA
1 TCTGTATCTCATCAGGAAGA
154791 CAGATTTGGT
Statistics
Matches: 301, Mismatches: 44, Indels: 12
0.84 0.12 0.03
Matches are distributed among these distances:
330 1 0.00
331 288 0.96
332 12 0.04
ACGTcount: A:0.25, C:0.20, G:0.16, T:0.39
Consensus pattern (331 bp):
TCTGTATCTCATCAGGAAGATAGGGTTTGAAGTCTCAATCGTATTGAGCTTCGCTTCATTGATTT
GATCTACTTCTCTATATCTCATCAGAAAGATGACCACCTCATTGTTTCAACTCACTTCTCTGTAT
CTCATCAAGAAAGACAATTTGATCCACTTCTCTATATCTCATCAAAAAGATGACCACTGTATTGC
TTTAACCCACTTCTTTGTATCTCATCAGGAAGATGGGGTTTGAAGTCTCATTCAAATTAAACTTC
GCTTCATTGATTTAGTCTACTTCTCTATATCTCATCAAGAAGATGACCGCCTCATTGATTCAATC
CACTTC
Done.