genome.fa.s15318.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01015318.1 Kokia drynarioides strain JFW-HI SEQ_130363, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  231499

Tables:   1   

This is table  1  of  1  ( 83 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3349--3399	24	2.1	24	88	0	75	23	11	9	54	1.66
23756--23785	12	2.5	12	88	0	51	83	6	10	0	0.81
24684--24737	23	2.5	20	77	11	54	40	5	0	53	1.24
24687--24729	23	1.9	22	85	4	59	41	2	0	55	1.12
29809--29850	16	2.6	17	77	11	52	54	14	0	30	1.40
42631--42679	20	2.7	18	77	22	57	44	2	2	51	1.24
62544--62587	12	3.7	12	79	11	54	61	9	25	4	1.45
69699--69725	4	6.8	4	100	0	54	25	0	22	51	1.48
71827--71950	59	2.1	59	87	0	185	43	8	4	43	1.54
73168--73220	22	2.4	21	71	6	52	45	1	1	50	1.23
75368--75413	17	2.5	19	79	13	60	32	2	0	65	1.05
75511--75567	5	12.2	5	75	14	50	63	0	1	35	1.05
75511--75569	23	2.5	23	83	8	75	62	0	1	35	1.05
75985--76011	8	3.4	8	100	0	54	51	0	0	48	1.00
75985--76020	16	2.2	16	90	0	54	55	0	0	44	0.99
76952--77017	4	16.2	4	81	9	71	65	0	34	0	0.93
76952--77017	15	4.3	16	78	18	70	65	0	34	0	0.93
76951--77018	29	2.4	31	80	16	92	63	0	36	0	0.95
84816--85136	29	11.0	29	78	8	278	33	3	26	36	1.72
84819--85099	57	4.8	57	85	6	334	33	2	27	36	1.72
90046--90079	15	2.1	17	89	10	54	35	0	0	64	0.94
90047--90102	20	2.8	20	78	10	53	37	0	0	62	0.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
90299--90357	28	2.1	29	84	6	77	32	6	18	42	1.77
90299--90336	13	2.8	14	88	4	51	31	7	18	42	1.79
90311--90365	28	2.0	28	85	7	76	30	7	20	41	1.79
91046--91089	10	4.2	10	80	8	52	72	2	2	22	1.07
91351--91454	20	5.2	19	79	9	109	60	2	18	18	1.48
91328--91454	60	2.1	60	84	7	159	59	3	17	18	1.52
91351--91469	40	3.0	40	75	13	131	59	2	18	19	1.49
91370--91469	41	2.6	38	78	10	105	61	3	18	18	1.48
91413--91469	18	3.1	18	80	12	53	57	1	19	21	1.49
91746--91802	20	2.7	21	74	17	55	52	7	24	15	1.67
91758--91803	20	2.4	19	85	3	65	52	4	23	19	1.64
92817--92851	17	2.0	18	88	5	54	62	2	0	34	1.10
95545--95595	21	2.4	21	81	9	59	58	1	0	39	1.09
110557--110596	22	1.9	20	90	10	62	37	0	0	62	0.95
123525--123556	5	6.4	5	100	0	64	0	21	56	21	1.43
123734--123781	8	5.8	8	95	4	78	22	0	0	77	0.78
123734--123784	3	18.0	3	76	11	54	23	0	0	76	0.79
123736--123784	9	5.7	9	97	2	84	22	0	0	77	0.77
124559--124610	26	2.0	26	81	7	61	34	0	0	65	0.93
124340--125024	341	2.0	341	90	1	1070	33	7	9	49	1.63
147225--147257	17	1.9	17	88	11	50	33	15	0	51	1.43
152374--152400	5	5.4	5	100	0	54	40	0	0	59	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
153623--153751	64	2.0	64	98	0	249	31	27	10	31	1.89
154689--154723	3	11.7	3	100	0	70	34	0	0	65	0.93
154847--154876	15	1.9	16	93	6	53	46	0	0	53	1.00
154847--154876	8	3.9	8	91	8	53	46	0	0	53	1.00
166087--166137	25	2.2	24	83	13	63	43	0	1	54	1.11
166087--166128	21	2.0	21	85	4	57	45	0	0	54	0.99
166092--166144	26	2.2	24	86	10	72	47	0	1	50	1.12
170081--170119	19	2.1	19	85	9	53	41	2	2	53	1.28
173335--173380	18	2.6	18	86	13	53	54	6	2	36	1.39
173340--173380	18	2.4	17	92	8	66	60	7	0	31	1.24
173347--173387	18	2.2	20	86	13	68	58	4	0	36	1.20
174423--174467	22	2.0	22	100	0	90	31	4	33	31	1.78
174616--174682	22	3.0	22	88	2	89	14	25	23	35	1.94
177227--177253	2	13.5	2	100	0	54	48	0	0	51	1.00
177792--178108	30	10.9	27	74	17	174	35	3	24	36	1.73
177826--178153	88	3.7	87	82	8	328	36	3	24	35	1.73
177793--178173	29	13.0	29	73	12	237	34	4	24	35	1.75
179128--179172	24	1.9	24	86	4	65	28	8	0	62	1.25
179306--179393	46	1.9	46	95	0	158	25	15	21	37	1.93
179571--179626	28	2.0	28	100	0	112	10	10	57	21	1.63
179774--179830	28	2.2	25	87	9	78	19	5	21	54	1.63
179831--179958	18	7.4	17	81	9	152	53	3	0	42	1.22
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
179831--179958	6	22.2	6	70	16	92	53	3	0	42	1.22
180352--180725	173	2.2	173	94	0	676	22	23	16	37	1.93
193017--193423	88	4.6	88	76	11	314	35	3	25	35	1.72
193046--193397	59	5.9	59	76	9	288	35	2	26	35	1.70
192931--193423	29	16.8	30	73	14	228	35	4	25	35	1.76
194420--194506	3	29.3	3	90	2	140	34	1	0	64	1.01
195104--195158	28	2.0	28	85	3	76	20	7	20	52	1.69
195163--195258	17	5.8	17	76	14	92	50	2	1	46	1.20
195179--195256	6	13.0	6	77	10	79	50	2	0	47	1.15
202110--202142	16	2.1	16	94	0	57	48	15	6	30	1.69
203006--203069	27	2.4	27	94	0	110	32	4	43	18	1.71
209818--209868	25	2.0	25	100	0	102	15	45	0	39	1.47
214563--214621	22	2.7	22	100	0	118	37	13	8	40	1.75
214387--214821	232	1.9	232	99	0	852	31	15	10	42	1.81
216062--216099	17	2.2	18	85	4	51	44	0	2	52	1.14
217929--218354	212	2.0	211	95	0	771	38	18	11	31	1.86
226806--226854	23	2.1	23	88	0	71	59	16	14	10	1.61

Tables:   1

The End!