genome.fa.s15320.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01015320.1 Kokia drynarioides strain JFW-HI SEQ_130366, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  252538

Tables:   1   

This is table  1  of  1  ( 71 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5796--5842	24	1.9	25	82	4	60	34	4	2	59	1.29
6224--6277	17	3.2	17	84	10	74	46	0	3	50	1.19
6223--6298	17	4.3	18	75	11	68	46	1	2	50	1.24
6223--6304	18	4.7	18	75	11	62	47	1	2	48	1.22
8142--8290	29	5.1	29	72	6	113	36	32	2	28	1.71
8356--8460	51	2.1	51	96	0	192	16	21	6	55	1.64
11503--11536	5	6.8	5	100	0	68	41	0	0	58	0.98
12463--12520	3	19.3	3	78	0	62	36	0	60	3	1.14
12463--12520	18	3.2	18	87	0	80	36	0	60	3	1.14
20232--20296	32	2.0	32	100	0	130	35	6	15	43	1.72
30174--30222	13	3.8	13	79	17	57	69	0	0	30	0.89
36495--36646	80	1.9	80	87	2	225	23	17	25	33	1.96
38605--38657	17	3.2	17	78	5	56	41	5	0	52	1.25
45312--45619	30	10.5	28	78	10	294	34	28	4	32	1.77
45312--45619	59	5.2	58	87	5	431	34	28	4	32	1.77
45312--45631	29	10.9	30	74	12	261	35	28	4	32	1.77
53616--53652	18	2.1	18	89	0	56	24	27	0	48	1.51
56076--56516	195	2.3	192	82	5	510	26	27	19	26	1.99
64052--64094	14	3.0	14	86	3	50	41	32	2	23	1.67
64146--64200	27	2.0	27	85	0	74	43	40	0	16	1.48
64252--64296	14	3.3	13	84	9	54	33	2	17	46	1.61
64263--64302	13	2.9	14	85	7	55	37	2	20	40	1.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64241--64310	27	2.6	28	77	4	72	28	1	22	47	1.60
79426--79457	16	2.1	16	88	11	50	56	12	0	31	1.37
79941--80744	364	2.2	365	90	4	1242	35	16	9	37	1.82
92936--93166	113	2.0	113	93	0	390	43	8	17	30	1.79
93242--93282	14	2.7	16	81	11	50	46	0	0	53	1.00
97118--97166	16	3.1	16	80	8	55	51	0	0	48	1.00
122475--122521	24	2.0	24	91	0	76	57	4	10	27	1.51
126103--126267	84	2.0	84	93	0	285	40	3	21	35	1.69
128698--128754	30	1.9	29	86	10	80	38	0	40	21	1.53
128703--128761	30	2.0	30	81	12	70	40	0	37	22	1.54
129496--129538	6	7.2	6	83	0	59	37	4	0	58	1.19
137078--137172	4	23.2	4	85	8	111	68	0	31	0	0.90
137078--137171	25	3.6	25	83	9	118	69	0	30	0	0.89
137077--137172	29	3.3	29	81	7	124	67	0	32	0	0.91
140013--140070	23	2.5	23	88	0	89	31	18	20	29	1.97
143032--143134	23	4.5	23	92	0	161	10	26	21	41	1.85
143128--143179	22	2.3	22	83	3	59	15	26	23	34	1.94
143124--143195	23	3.2	22	84	4	81	13	20	29	36	1.92
148969--149002	11	3.2	11	83	8	52	17	2	0	79	0.86
149831--149898	13	4.9	13	76	16	57	80	4	11	2	0.96
149831--149898	15	4.9	14	78	7	68	80	4	11	2	0.96
150652--150708	23	2.5	23	79	0	69	31	24	21	22	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
153230--153304	28	2.7	28	82	0	87	20	8	25	46	1.77
153264--153310	14	3.4	14	80	11	51	19	4	27	48	1.67
153529--153568	21	2.0	21	95	5	73	27	15	37	20	1.92
155604--155652	16	3.2	16	77	16	68	36	0	4	59	1.17
156306--156331	12	2.2	12	100	0	52	50	0	0	50	1.00
156522--156551	3	9.7	3	92	7	51	0	33	0	66	0.92
156519--156570	12	4.6	11	79	13	52	0	32	0	67	0.91
156547--156585	4	9.5	4	88	5	60	0	23	0	76	0.78
156522--156593	25	3.0	26	80	13	75	1	27	0	70	0.95
156497--156585	29	3.2	29	75	19	73	0	29	0	70	0.87
185520--185556	18	2.1	18	90	10	58	40	13	43	2	1.58
193750--193775	3	8.7	3	100	0	52	34	0	0	65	0.93
195779--195817	15	2.7	14	92	7	69	66	5	5	23	1.32
196064--196088	13	1.9	13	100	0	50	88	0	0	12	0.53
197748--197780	13	2.6	13	90	4	50	51	18	9	21	1.73
200425--200468	23	1.9	23	85	0	61	43	2	4	50	1.35
203522--203551	15	2.0	15	100	0	60	33	6	33	26	1.83
205827--205859	2	16.5	2	93	0	57	48	3	0	48	1.17
208535--208584	23	2.2	23	96	0	91	12	26	22	40	1.88
215257--215299	19	2.4	17	81	14	50	67	2	2	27	1.15
229607--229655	17	2.9	16	78	6	53	53	2	0	44	1.12
244185--244532	173	2.0	173	98	0	678	31	17	18	32	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
246383--246579	55	3.5	53	77	16	168	32	20	14	32	1.93
246347--246618	57	4.8	56	78	10	220	31	18	16	33	1.93
246406--246604	60	3.5	59	80	9	193	31	18	16	33	1.93
246406--246618	55	3.8	57	77	11	208	31	19	16	32	1.94
247508--247771	56	4.7	56	76	7	225	37	15	20	27	1.92

Tables:   1

The End!