genome.fa.s15322.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01015322.1 Kokia drynarioides strain JFW-HI SEQ_130368, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  397318

Tables:   1   

This is table  1  of  1  ( 100 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
413--483	15	4.7	15	78	0	88	18	12	25	43	1.85
515--593	17	4.8	16	79	4	77	50	3	1	44	1.28
515--593	34	2.4	33	82	2	104	50	3	1	44	1.28
2279--3627	667	2.0	667	95	0	2434	34	12	12	40	1.81
12102--12173	16	4.6	15	71	8	54	52	9	6	30	1.60
12102--12176	15	4.8	15	72	8	60	54	9	6	29	1.58
31278--31322	23	1.9	24	90	4	74	42	0	2	55	1.12
31680--31817	69	2.0	69	100	0	276	39	17	5	37	1.74
36194--36221	2	14.0	2	100	0	56	50	0	0	50	1.00
49011--49054	22	1.9	24	86	9	65	40	13	2	43	1.57
58323--58349	2	13.5	2	100	0	54	0	51	0	48	1.00
63834--63895	3	20.7	3	93	0	70	58	0	9	32	1.31
64243--64273	3	10.3	3	92	0	53	64	32	0	3	1.09
65910--66012	33	3.0	33	68	21	77	28	0	6	65	1.18
74360--74483	64	1.9	64	96	0	230	35	16	10	37	1.83
87231--87297	29	2.3	29	84	0	89	35	13	1	49	1.51
87933--87984	27	2.0	27	84	3	70	36	0	3	59	1.16
113254--113290	17	2.2	17	90	0	56	16	13	24	45	1.83
116510--116539	3	10.0	3	100	0	60	33	0	0	66	0.92
117666--117690	4	6.2	4	100	0	50	24	52	0	24	1.48
133105--133160	23	2.2	27	72	27	75	57	5	3	33	1.39
133112--133160	23	2.1	23	100	0	98	61	4	4	30	1.33
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
153885--153930	24	1.9	24	82	8	58	63	2	10	23	1.38
160319--160367	24	2.0	25	84	4	64	6	2	38	53	1.38
161179--161213	18	1.9	18	88	0	52	48	8	8	34	1.64
161338--161382	18	2.3	21	85	11	60	75	2	0	22	0.91
166190--166232	6	7.2	6	92	7	70	0	67	0	32	0.91
168122--168210	16	5.0	17	71	24	60	66	2	1	30	1.11
176783--177205	210	2.0	211	88	2	627	34	15	18	31	1.92
181539--181576	20	1.9	20	88	0	58	34	5	5	55	1.45
191104--191310	100	2.1	100	100	0	414	29	20	12	37	1.89
193930--193954	12	2.1	12	100	0	50	32	20	32	16	1.94
195394--195480	43	2.0	43	100	0	174	34	11	18	35	1.87
196697--196727	14	2.2	14	94	0	53	12	6	3	77	1.08
202899--202927	8	3.8	8	90	9	51	10	0	0	89	0.48
202900--202929	7	4.1	7	95	4	51	13	0	0	86	0.57
203575--203610	2	18.0	2	100	0	72	50	0	0	50	1.00
222687--222763	39	2.0	39	92	0	127	50	15	10	23	1.74
233609--233659	21	2.4	22	93	6	88	13	7	3	74	1.18
233604--233659	22	2.4	23	85	14	80	14	7	3	75	1.16
234620--234670	22	2.4	22	86	3	68	5	21	0	72	1.05
236033--236225	87	2.2	87	81	4	221	39	18	7	34	1.79
236310--236362	19	2.7	19	82	8	63	67	3	1	26	1.17
236300--236362	20	3.2	20	78	13	67	65	3	1	30	1.18
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
236361--236476	28	4.2	27	71	15	76	61	2	6	30	1.34
236376--236419	18	2.5	19	85	10	58	63	2	2	31	1.19
236388--236488	48	2.2	45	77	8	103	63	1	5	28	1.29
236773--236814	19	2.3	18	80	15	50	38	2	0	59	1.10
246764--246901	74	1.9	74	87	0	204	34	13	22	29	1.92
250950--250978	3	9.7	3	100	0	58	68	0	0	31	0.89
254623--254672	26	2.0	26	88	4	75	42	4	2	52	1.31
262621--262655	17	2.1	17	94	0	61	17	2	31	48	1.61
265542--265637	47	2.0	47	97	0	183	37	8	11	42	1.71
273721--273750	5	6.2	5	92	7	53	83	0	0	16	0.65
275694--275721	3	9.3	3	100	0	56	0	32	0	67	0.91
283071--283228	78	2.0	78	100	0	316	27	16	11	44	1.81
288896--289129	113	2.0	117	90	5	377	23	7	29	40	1.81
293565--293607	15	2.6	16	82	14	52	62	0	2	34	1.08
295774--295836	31	2.1	31	96	3	119	57	3	0	39	1.15
298933--298968	11	3.3	11	88	0	54	27	5	2	63	1.30
301969--301998	7	4.3	7	95	0	51	36	0	0	63	0.95
312923--312952	10	3.1	10	90	9	53	50	0	0	50	1.00
312920--312953	9	3.7	9	92	7	59	52	0	0	47	1.00
317976--318017	19	2.2	20	83	12	52	35	0	2	61	1.09
318132--318172	20	2.0	20	85	0	55	21	9	9	58	1.59
322119--322152	16	2.2	16	89	5	52	76	2	0	20	0.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
322700--322759	20	3.0	19	83	9	66	43	3	1	51	1.28
326899--326974	27	2.8	27	78	7	75	72	2	9	15	1.21
326918--326967	13	3.8	13	78	2	55	76	4	6	14	1.13
327103--327155	25	2.1	25	89	0	79	60	3	15	20	1.50
327783--327817	16	2.2	16	89	0	52	60	0	14	25	1.35
328662--328701	19	2.1	19	85	4	53	22	0	2	75	0.93
329363--329432	21	3.0	24	71	14	65	41	0	4	54	1.20
334303--334340	17	2.4	17	86	8	53	65	0	18	15	1.27
337625--337679	29	1.9	28	92	3	92	41	3	30	23	1.72
339136--339286	76	2.0	76	100	0	302	26	10	19	43	1.84
340097--340166	20	3.6	20	76	18	67	65	8	0	25	1.21
340266--340309	20	2.2	20	84	12	54	68	22	0	9	1.18
340288--340416	12	11.3	12	77	8	103	69	17	5	6	1.30
340292--340416	23	5.5	22	69	17	60	69	17	5	7	1.31
340287--340416	65	2.0	66	86	1	181	70	17	5	6	1.30
340339--340369	9	3.4	9	100	0	62	77	22	0	0	0.77
340359--340471	36	3.2	36	83	7	117	68	16	6	8	1.37
340452--340487	17	2.1	17	94	0	63	75	16	2	5	1.12
340421--340553	51	2.7	48	80	6	142	69	19	4	6	1.29
340464--340521	22	2.7	21	76	7	62	74	18	1	5	1.10
346364--346440	39	2.0	39	89	0	118	51	5	2	40	1.38
350265--350306	17	2.6	16	77	7	50	33	0	2	64	1.07
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
351297--351337	22	1.9	21	85	5	55	51	7	0	41	1.30
357348--357403	8	6.6	9	79	20	59	7	8	1	82	0.92
370012--370073	6	10.3	6	96	0	115	51	16	0	32	1.44
378766--378851	38	2.3	38	86	8	113	56	5	2	34	1.36
386459--386656	95	2.1	95	88	3	292	40	11	10	37	1.74
394553--394629	17	4.4	17	72	21	52	25	1	3	68	1.14
394572--394619	18	2.8	17	81	18	55	18	0	4	77	0.93
394553--394638	18	4.8	18	73	13	54	25	2	3	68	1.17
394538--394627	26	3.5	26	73	10	78	23	2	3	71	1.13
395972--396121	41	3.7	40	84	7	178	27	28	22	22	1.99
396188--396329	41	3.5	41	87	3	189	26	21	25	26	2.00
397255--397294	17	2.3	17	91	4	62	67	5	2	25	1.23

Tables:   1

The End!