genome.fa.s1533.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01001533.1 Kokia drynarioides strain JFW-HI SEQ_113102, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  116383

Tables:   1   

This is table  1  of  1  ( 54 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2462--2595	30	4.5	29	78	12	121	36	3	21	38	1.72
2464--2595	59	2.2	59	82	14	164	36	3	21	37	1.72
3487--4182	206	3.4	205	86	3	914	22	22	18	35	1.96
4345--4562	39	5.6	39	69	6	154	24	17	31	26	1.97
4346--4551	78	2.6	77	87	5	290	24	18	31	25	1.97
5078--5281	49	4.2	48	72	12	130	15	27	19	37	1.92
5109--5238	49	2.7	48	83	5	147	14	28	19	37	1.91
4942--5189	97	2.5	98	77	4	250	17	22	18	41	1.91
5196--5436	100	2.4	99	82	4	288	17	25	19	37	1.93
6637--6728	10	8.9	10	73	13	53	7	10	0	81	0.87
6688--6728	16	2.6	16	88	3	66	0	14	0	85	0.60
12180--12349	59	2.9	58	72	10	150	36	8	25	29	1.86
12275--12422	58	2.6	57	80	6	147	35	5	27	31	1.79
12275--12432	29	5.5	28	76	10	115	35	5	25	34	1.78
13525--13577	3	17.3	3	88	3	79	35	0	0	64	0.94
14307--14399	17	5.4	17	78	5	87	53	3	1	41	1.24
14308--14399	35	2.6	35	84	0	112	54	3	1	41	1.24
23021--23429	83	5.0	83	91	2	630	28	4	14	52	1.62
23021--23429	165	2.5	166	91	2	675	28	4	14	52	1.62
27487--27900	138	3.0	137	92	3	699	39	13	25	21	1.90
30984--31043	29	2.1	29	100	0	120	51	6	16	25	1.68
39134--39193	31	2.0	29	83	6	75	48	10	6	35	1.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39687--39734	14	3.5	13	80	8	51	35	8	8	47	1.64
42777--42838	28	2.2	27	80	8	70	24	8	1	66	1.28
47202--47256	14	4.1	13	88	2	74	85	0	14	0	0.60
47202--47253	22	2.4	22	90	6	79	84	0	15	0	0.62
47205--47248	6	6.8	6	80	14	52	84	0	15	0	0.63
48230--48473	49	5.0	49	79	5	224	36	15	26	21	1.93
48544--48596	21	2.5	21	96	0	97	45	5	22	26	1.74
49006--49150	40	3.6	40	80	2	175	33	29	13	24	1.93
49006--49148	41	3.6	41	81	2	175	32	30	12	24	1.92
50882--50949	29	2.3	28	82	12	75	27	8	0	63	1.24
52581--52623	19	2.4	18	85	14	54	37	2	2	58	1.24
53987--54147	59	2.7	59	85	0	205	50	10	13	25	1.72
59257--59305	24	2.0	24	96	0	89	57	12	16	14	1.66
63449--63617	92	1.8	92	80	0	203	47	9	3	39	1.53
66279--66338	29	2.1	29	96	0	111	35	10	16	38	1.82
79135--79164	9	3.3	9	100	0	60	60	10	0	30	1.30
80206--80243	14	2.8	14	88	4	51	10	15	0	73	1.09
80851--80875	2	12.5	2	100	0	50	48	0	0	52	1.00
80853--80907	6	9.2	6	89	0	65	38	3	10	47	1.56
80851--80905	18	3.1	18	89	0	74	40	3	9	47	1.53
80865--80907	18	2.4	18	96	0	77	34	4	13	46	1.65
88746--88831	27	3.2	27	81	0	109	38	17	26	17	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
90434--90476	18	2.4	18	80	7	52	46	2	0	51	1.13
91590--91899	70	4.6	65	78	8	239	35	15	18	30	1.92
95734--95765	14	2.4	14	90	10	50	62	0	0	37	0.95
97210--97235	3	8.7	3	100	0	52	65	0	0	34	0.93
104292--104319	2	14.0	2	100	0	56	50	0	0	50	1.00
104884--104919	2	18.5	2	94	5	65	47	0	0	52	1.00
105621--105686	21	3.1	22	77	12	59	57	4	3	34	1.34
107991--108030	2	20.0	2	100	0	80	50	0	0	50	1.00
114098--114155	29	1.9	29	86	6	80	53	13	12	20	1.72
115929--115978	21	2.4	22	83	6	68	34	0	4	62	1.14

Tables:   1

The End!