genome.fa.s15330.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01015330.1 Kokia drynarioides strain JFW-HI SEQ_130377, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  537633

Tables:   1   

This is table  1  of  1  ( 112 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
948--995	24	1.9	26	84	16	66	45	0	22	31	1.53
1068--1203	23	6.0	22	77	13	98	13	24	23	38	1.90
1121--1200	23	3.5	22	86	5	106	12	22	28	36	1.91
7280--7509	123	1.8	126	86	6	335	36	11	14	38	1.82
7714--7746	14	2.4	14	85	5	50	51	9	0	39	1.34
14369--14420	21	2.5	21	96	0	95	28	13	46	11	1.78
19428--19539	4	28.0	4	88	7	102	49	33	0	16	1.47
19442--19539	38	2.6	38	91	0	160	48	35	0	15	1.45
20956--20997	15	2.6	17	82	17	63	26	4	0	69	1.08
20956--21004	16	3.1	16	82	5	64	28	6	0	65	1.16
24753--24811	18	3.3	18	79	9	66	52	5	6	35	1.50
31312--31338	3	9.0	3	100	0	54	0	66	0	33	0.92
31590--31622	2	16.5	2	93	0	57	48	3	0	48	1.17
45449--45672	61	3.7	60	79	5	234	33	15	13	37	1.87
45445--45672	122	1.9	121	84	2	305	32	15	13	38	1.86
45485--45730	122	2.0	122	81	4	284	29	14	13	41	1.85
45449--45730	61	4.7	60	78	9	180	32	15	12	39	1.85
48309--48347	17	2.3	17	91	8	62	43	2	5	48	1.38
79813--79893	42	1.9	42	82	9	103	41	13	8	35	1.75
84929--85243	156	2.0	158	91	1	508	45	20	6	28	1.76
86195--86234	22	1.9	22	85	10	57	50	0	2	47	1.14
93193--93245	16	3.5	15	79	10	54	64	5	0	30	1.17
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
93213--93251	15	2.6	14	80	11	51	69	5	0	25	1.09
96647--96694	26	1.9	24	87	8	69	54	4	2	39	1.32
97185--97243	31	1.9	31	83	10	77	28	18	1	50	1.56
112846--112881	12	3.0	12	95	0	63	8	38	27	25	1.84
124522--124568	19	2.6	18	83	6	58	74	4	2	19	1.09
124521--124569	18	2.7	17	79	14	53	71	4	2	22	1.13
126380--126438	30	2.0	29	87	9	84	42	10	1	45	1.48
126975--127023	2	24.5	2	100	0	98	48	0	0	51	1.00
127744--127781	19	2.0	19	100	0	76	26	10	31	31	1.90
144983--145052	28	2.5	28	80	17	74	48	2	0	48	1.16
153600--153648	21	2.4	22	80	13	59	36	2	2	59	1.21
179994--180180	96	1.9	97	83	3	243	49	13	11	24	1.76
180005--180209	96	2.1	96	81	3	234	49	15	11	23	1.77
183317--183390	38	1.9	38	94	5	132	45	17	8	28	1.77
191420--191457	16	2.4	16	87	12	60	36	0	2	60	1.11
192665--192704	20	2.1	19	85	4	53	17	10	5	67	1.37
206999--207024	12	2.2	12	100	0	52	42	7	11	38	1.70
218456--218491	3	12.0	3	100	0	72	33	0	0	66	0.92
223026--223091	34	1.9	34	93	0	114	40	4	4	50	1.43
233870--234057	96	2.0	96	82	6	229	37	14	19	29	1.91
234418--234674	29	8.8	30	78	12	243	31	3	29	35	1.74
234418--234674	59	4.4	59	89	4	353	31	3	29	35	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
235743--235767	3	8.3	3	100	0	50	36	0	0	64	0.94
236357--236427	15	4.7	15	81	6	90	19	14	26	39	1.90
236465--236519	17	3.4	17	80	10	69	52	1	1	43	1.22
238791--238830	2	20.5	2	94	5	73	50	0	0	50	1.00
249196--249224	4	7.2	4	100	0	58	0	72	0	27	0.85
263218--263253	19	2.0	17	89	10	54	61	2	0	36	1.11
268582--268646	32	2.0	33	85	11	91	41	26	9	23	1.84
270981--271039	2	29.5	2	96	0	109	50	1	0	47	1.11
278564--278774	105	2.0	105	98	0	404	19	2	25	52	1.60
278614--278775	51	3.1	51	64	26	131	19	2	26	51	1.59
280273--280340	32	2.1	32	97	0	127	30	22	19	27	1.97
293391--293426	18	2.0	18	88	0	54	44	8	5	41	1.58
295119--295155	2	18.5	2	100	0	74	48	0	0	51	1.00
306535--306573	15	2.6	15	95	0	69	33	15	30	20	1.94
307628--307670	21	2.0	21	82	8	52	39	18	23	18	1.92
308532--308570	20	1.9	20	84	5	51	48	5	2	43	1.38
312734--312796	30	2.1	30	84	3	81	26	3	6	63	1.34
312963--313034	30	2.4	30	100	0	144	47	12	15	25	1.80
320869--320894	5	5.2	5	100	0	52	57	0	0	42	0.98
321458--321528	32	2.2	31	82	9	81	16	5	18	59	1.56
322092--322117	6	4.3	6	100	0	52	50	19	0	30	1.48
323960--323984	5	5.0	5	100	0	50	0	20	0	80	0.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
326069--326106	2	19.0	2	100	0	76	50	0	0	50	1.00
326177--326216	18	2.2	18	90	0	62	50	2	2	45	1.28
328465--328501	18	2.0	19	85	15	51	48	5	16	29	1.68
328753--328783	7	4.6	7	96	4	55	74	9	0	16	1.07
335112--335138	13	2.1	13	100	0	54	7	14	37	40	1.74
381139--381199	29	2.1	30	81	3	70	49	8	1	40	1.42
384201--384258	25	2.3	26	82	8	66	46	5	1	46	1.35
386534--387849	663	2.0	665	82	7	1612	35	11	15	37	1.84
389562--389717	78	2.0	78	98	0	303	39	10	10	39	1.74
403847--403892	18	2.6	18	79	6	58	34	15	13	36	1.86
404343--404370	2	14.0	2	100	0	56	50	0	0	50	1.00
421367--421426	24	2.4	25	81	10	70	36	0	5	58	1.20
430434--430468	6	5.8	6	96	0	52	45	0	54	0	0.99
445185--445215	2	15.5	2	100	0	62	48	0	0	51	1.00
446051--448043	216	9.3	215	82	3	2193	41	13	17	27	1.87
446051--448043	429	4.6	431	86	2	2447	41	13	17	27	1.87
450300--450346	25	1.9	24	82	4	58	61	12	6	19	1.52
462153--462235	38	2.2	39	95	2	150	56	12	4	26	1.55
463152--463180	12	2.4	12	100	0	58	17	31	17	34	1.93
465320--465376	31	1.9	28	86	10	78	3	29	1	64	1.20
468546--468629	39	2.2	39	97	0	159	55	13	4	26	1.57
468795--468824	14	2.1	14	100	0	60	23	20	43	13	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
471809--471834	9	2.9	9	100	0	52	11	0	0	88	0.52
473595--476036	216	11.3	216	84	3	2942	41	13	17	27	1.86
473595--478576	433	11.6	432	83	3	5898	41	13	16	27	1.86
473591--478576	649	7.7	648	85	4	6039	41	13	16	27	1.86
476094--478576	431	5.8	429	84	3	2979	41	13	16	27	1.86
476060--478576	216	11.7	216	84	3	2977	41	13	16	27	1.86
479706--479825	50	2.4	52	82	4	147	35	10	15	38	1.82
480038--480070	17	1.9	17	88	11	50	66	6	0	27	1.15
480571--481811	216	5.8	215	83	5	1423	41	14	16	27	1.87
480204--481810	637	2.6	617	81	6	1835	41	14	16	27	1.87
484618--484662	21	2.1	21	91	0	72	8	15	2	73	1.18
486266--486303	20	2.0	20	89	5	60	10	13	0	76	1.02
487294--487350	18	2.8	21	75	22	59	50	15	5	28	1.65
488541--488589	25	2.0	25	88	8	73	53	12	14	20	1.73
489899--489946	25	2.0	24	84	12	62	52	10	12	25	1.71
490992--491038	24	2.0	24	100	0	94	4	12	6	76	1.12
490998--491039	12	3.5	12	75	12	50	4	14	4	76	1.12
490993--491045	24	2.2	24	93	0	88	3	16	7	71	1.24
494968--494998	16	1.9	16	93	0	53	51	12	19	16	1.76
498502--498635	67	2.0	67	97	0	250	51	14	17	17	1.77
501279--501316	17	2.2	17	86	9	51	5	18	2	73	1.14
506554--506586	14	2.3	15	89	5	50	66	0	9	24	1.20
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
519449--519547	50	2.0	50	82	7	121	29	10	14	46	1.77
531914--531950	19	1.9	19	89	10	58	75	2	13	8	1.13

Tables:   1

The End!