genome.fa.s15332.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01015332.1 Kokia drynarioides strain JFW-HI SEQ_130379, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  389104

Tables:   1   2   

This is table  1  of  2  ( 137 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
614--719	6	18.0	6	66	14	60	50	2	3	42	1.34
667--755	29	3.1	29	83	1	117	59	3	3	33	1.30
626--733	17	6.5	17	71	16	84	53	3	4	37	1.39
7651--8144	29	16.8	29	69	14	198	32	5	27	34	1.80
7606--7997	59	6.7	58	71	9	269	31	8	26	33	1.86
7561--8022	29	15.8	29	73	12	232	31	9	26	32	1.88
7893--8051	87	1.8	87	84	2	221	31	4	28	35	1.77
7893--8146	88	2.9	85	78	9	219	34	3	27	35	1.73
8068--8141	30	2.6	29	85	8	80	37	1	24	36	1.64
7917--8177	29	8.9	29	71	17	107	33	3	26	35	1.75
8008--8170	59	2.8	56	77	9	155	36	3	24	36	1.71
9692--9876	96	1.9	96	88	6	277	36	14	19	30	1.91
9998--10029	7	4.2	8	88	11	50	75	12	0	12	1.06
10223--10311	28	3.1	28	77	15	110	30	7	26	34	1.85
10237--10546	59	5.3	58	83	3	329	32	3	26	37	1.75
10235--10546	29	10.7	29	71	9	143	32	3	26	37	1.75
10270--10546	117	2.4	117	86	2	385	33	3	25	37	1.73
10241--10525	30	9.7	30	73	12	173	32	3	26	37	1.75
10270--10538	29	9.2	29	71	6	166	33	3	26	37	1.74
10416--10546	30	4.4	30	75	5	90	35	2	22	39	1.67
12443--12535	6	16.2	6	73	16	81	53	3	0	43	1.16
12443--12535	17	5.4	17	85	1	123	53	3	0	43	1.16
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12646--12756	56	2.0	55	96	1	204	48	11	7	32	1.67
13200--13283	17	4.9	17	88	0	114	55	3	1	39	1.25
13201--13283	34	2.4	34	89	0	130	56	3	1	38	1.24
17090--17124	2	17.5	2	93	0	61	48	0	2	48	1.16
19007--19031	4	6.2	4	100	0	50	48	0	0	52	1.00
32512--32536	10	2.5	10	100	0	50	36	0	0	64	0.94
38579--38628	15	3.6	14	76	10	50	36	0	4	60	1.16
38759--38792	17	2.0	17	94	0	59	44	0	0	55	0.99
40147--40205	24	2.4	25	80	11	77	42	6	1	49	1.39
40434--40464	15	2.0	16	93	6	55	12	0	9	77	0.99
45260--45300	15	2.5	17	80	11	59	65	0	0	34	0.93
45231--45309	24	3.0	25	78	10	70	56	0	0	43	0.99
45667--45705	20	2.0	19	85	5	51	48	2	10	38	1.51
67245--67292	25	2.0	25	92	8	82	68	0	2	29	1.01
69790--69816	6	4.5	6	100	0	54	48	14	37	0	1.45
71908--71934	2	13.5	2	100	0	54	51	0	0	48	1.00
75671--75712	6	7.0	6	100	0	84	16	66	0	16	1.25
101313--101386	34	2.2	34	88	7	107	20	36	0	43	1.52
106717--106775	17	3.5	16	70	25	50	18	33	5	42	1.72
106718--106792	34	2.2	34	90	0	114	18	34	4	42	1.69
114171--114198	3	9.3	3	100	0	56	0	0	64	35	0.94
119779--119847	27	2.5	26	81	13	68	52	8	5	33	1.56
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
120199--120305	54	2.0	53	87	1	151	26	19	12	42	1.86
121402--121450	16	3.0	16	82	5	62	36	0	0	63	0.95
141486--141519	17	2.0	17	94	0	59	20	17	20	41	1.91
148293--148320	6	4.7	6	100	0	56	32	0	67	0	0.91
151675--151710	3	13.0	3	83	16	51	30	0	0	69	0.89
153453--153661	59	3.5	56	77	10	184	41	2	22	33	1.67
153446--153591	30	4.9	30	73	11	120	39	3	23	32	1.72
153419--153591	60	2.9	59	78	5	172	39	2	24	32	1.70
153455--153620	90	1.8	90	81	0	206	40	1	23	34	1.65
153487--153654	29	5.6	29	79	6	131	41	2	21	34	1.66
153577--153672	30	3.2	29	82	5	111	43	2	15	38	1.59
177442--177474	12	2.8	12	86	4	50	84	0	12	3	0.72
182152--182176	2	12.5	2	100	0	50	52	0	0	48	1.00
183325--183405	42	2.0	40	81	13	94	39	6	3	50	1.45
185503--185564	31	2.1	30	84	6	81	35	4	12	46	1.64
185500--185572	29	2.5	29	76	8	69	36	6	13	42	1.71
188794--188837	23	1.9	23	90	9	72	34	15	36	13	1.87
194094--194121	2	14.0	2	100	0	56	50	0	0	50	1.00
195229--195263	16	2.2	16	89	0	52	5	0	11	82	0.82
197567--197621	23	2.3	23	84	9	67	43	3	1	50	1.30
201569--201608	20	2.1	19	85	4	53	70	15	0	15	1.18
201616--201674	21	2.7	22	76	5	66	67	15	5	11	1.38
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
201593--201678	24	3.8	24	70	14	65	67	15	5	11	1.39
201642--201699	24	2.4	23	80	5	62	68	15	5	10	1.35
203838--203871	2	17.0	2	100	0	68	50	0	0	50	1.00
208385--208418	17	1.9	18	94	5	61	41	26	2	29	1.70
209817--209863	23	2.0	24	83	4	60	48	4	6	40	1.48
214028--214066	17	2.3	16	83	12	51	46	5	0	48	1.24
231072--231114	18	2.4	18	80	7	52	46	2	0	51	1.13
234764--234817	22	2.8	18	79	17	56	42	3	1	51	1.30
236134--236196	15	4.2	15	72	6	56	65	4	1	28	1.22
249220--249257	19	2.1	19	85	14	53	68	5	5	21	1.29
260326--260390	30	2.2	30	88	0	94	26	4	13	55	1.58
260509--260552	13	3.5	13	76	17	56	72	2	2	22	1.07
260509--260550	12	3.4	12	75	18	50	73	2	2	21	1.06
261373--261411	20	2.0	20	85	5	53	25	7	25	41	1.82
261667--261712	14	3.4	14	79	11	51	50	0	8	41	1.33
271986--272014	11	2.6	11	100	0	58	6	27	0	65	1.18
273082--273108	10	2.7	10	100	0	54	0	0	48	51	1.00
273619--273644	12	2.2	12	100	0	52	0	50	23	26	1.50
274845--275345	250	2.0	250	99	0	993	30	17	19	33	1.94
276301--276452	82	1.9	82	80	5	182	43	11	9	36	1.72
277455--278111	329	2.0	329	95	0	1188	34	20	15	29	1.94
287227--287259	6	5.5	6	92	0	57	3	15	48	33	1.60
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
290546--290596	25	2.1	24	82	13	61	43	0	1	54	1.11
293227--293308	23	3.4	23	74	17	78	40	21	26	10	1.87
300090--300165	38	2.0	37	97	2	143	26	23	7	42	1.81
301539--301596	31	1.9	30	86	10	82	41	5	3	50	1.42
314992--315022	3	10.3	3	92	0	53	61	0	3	35	1.12
315009--315055	9	5.2	9	89	0	67	44	2	21	31	1.64
317334--317364	14	2.3	14	94	5	55	35	6	0	58	1.24
317355--317393	16	2.3	18	82	13	55	25	7	0	66	1.18
317400--317510	18	6.2	17	70	17	66	35	3	3	57	1.33
317406--317643	36	6.6	39	65	26	107	31	3	5	59	1.35
317354--317643	71	4.0	72	78	10	304	33	3	4	58	1.35
317400--317643	71	3.4	71	80	12	318	32	3	4	59	1.35
317406--317661	142	1.8	142	91	3	426	31	3	5	60	1.34
317645--317685	19	2.2	18	86	8	55	36	2	2	58	1.24
321496--321656	62	2.7	61	87	3	229	36	8	11	42	1.72
323889--323917	2	14.5	2	100	0	58	51	48	0	0	1.00
328707--328748	21	2.0	20	86	4	57	61	0	2	35	1.09
329556--329611	25	2.2	25	84	12	71	21	0	7	71	1.09
330335--330389	17	3.2	17	66	19	51	30	3	21	43	1.70
330321--330389	34	2.0	34	100	0	138	28	2	23	44	1.67
331827--331872	21	2.2	21	92	0	74	19	39	17	23	1.92
332122--332171	21	2.5	20	86	3	64	48	28	0	24	1.52
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
332122--332178	21	2.8	21	83	2	53	45	31	0	22	1.53
332183--332214	14	2.3	14	94	0	55	53	15	0	31	1.43
332190--332243	21	2.5	22	80	14	60	53	18	0	27	1.45
332269--332305	7	5.4	7	90	3	58	56	27	0	16	1.40
332363--332469	42	2.5	42	79	11	112	50	21	0	27	1.55
335259--335296	16	2.5	15	88	12	60	65	0	0	34	0.93
335371--335401	12	2.6	12	94	0	53	67	0	0	32	0.91
335643--335684	19	2.2	19	83	8	50	0	28	0	71	0.86
337348--337403	22	2.8	20	72	15	53	39	1	0	58	1.08
349806--351819	811	2.6	775	80	7	2258	33	12	15	38	1.84

Tables:   1   2